BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yxdF (2339 kb forward) BIO15.01
(177 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1405403 (U60336) orfX [Lactococcus lactis cremoris] 79 2e-14
gb|AAD32389.1|AAD32389 (AF065404) pXO1-85 [Bacillus anthracis] 57 1e-07
dbj|BAA18426| (D90914) hypothetical protein [Synechocystis ... 56 2e-07
dbj|BAA19725| (D88802) transmembrane [Bacillus subtilis] >g... 54 9e-07
dbj|BAA11325| (D78257) ORF8 [Enterococcus faecalis] 47 9e-05
sp|P45613|YPH1_MYCCA HYPOTHETICAL 37.9 KD PROTEIN IN PTSH 3... 47 9e-05
gb|AAF13651.1|AF188935_49 (AF188935) pXO2-46 [Bacillus anth... 43 0.002
gb|AAD18544| (AE001624) CT254 hypothetical protein [Chlamyd... 43 0.002
gi|1405403 (U60336) orfX [Lactococcus lactis cremoris]
Length = 232
Score = 79.2 bits (192), Expect = 2e-14
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 1/168 (0%)
Query: 1 MTLVLILIFIIAWKLGYLKNTLKNWDLKRIFWLMGIVFFTLATNYLVTVLVLKTQIISSV 60
M++ L L +I +KLGY KNT+ + +K + +L+ I L Y + + I+
Sbjct: 57 MSISLFLGILICYKLGYYKNTISIFKIKNLLFLL-ITTIILFVIYFFSYTYYNSHFITPG 115
Query: 61 TSDTGMSDILGQLPILCQKYILGIIVPLSEELLFRSYIFGSITNKKVAFLISSVLFALVH 120
+ T + + + Q + I P+ EE FR+ I+ N K+A+++S V FA +H
Sbjct: 116 IAKTQAAFSIQIVFPFVQFITIAICAPIFEEASFRTTIYSFFKNDKIAYIVSCVGFAWMH 175
Query: 121 TGFSWYLLPYLILSFIITWVYSKRNNFIESAIVHSSVNLFGGSAIKLL 168
TG + L+ YL +S ++T +Y +R ES +VH N I LL
Sbjct: 176 TGPNPILIVYLPMSIVLTSIYHRRRVLGESILVHGVFNALLPIVIPLL 223
gb|AAD32389.1|AAD32389 (AF065404) pXO1-85 [Bacillus anthracis]
Length = 227
Score = 56.6 bits (134), Expect = 1e-07
Identities = 48/164 (29%), Positives = 82/164 (49%), Gaps = 10/164 (6%)
Query: 2 TLVLILIFIIAWK--LGYLKNTLKNWDLKRIFWLMGIVFFTLATNYLVTVLVLKTQIISS 59
+L+LI+IF+I K + K ++K I+ L+GI+F LA + +L I
Sbjct: 60 SLMLIIIFLIYGKEIINDPKLSIKLSRNSFIWILVGIIFVFLAQ---IVGSMLDKSIFQL 116
Query: 60 VTSDTGMSDILGQLPILCQKYI-LGIIVPLSEELLFRSYIFGSITNK---KVAFLISSVL 115
T S+I+ I I + ++ PL EE +FR + +K + LISS
Sbjct: 117 TTQSANTSNIVAAAAISPVALISIVLLAPLVEEFVFRYAAINILMSKFKQTWSILISSSF 176
Query: 116 FALVHTGFSWYLLPYLILSFIITWVYSKRNNFIESAIVHSSVNL 159
F+++H F ++ Y ++ I+ VY + N + S +VH+S+NL
Sbjct: 177 FSIMHFDFP-FIFGYFLIGVILALVYVRTNRLLVSFVVHASMNL 219
dbj|BAA18426| (D90914) hypothetical protein [Synechocystis sp.]
Length = 529
Score = 55.8 bits (132), Expect = 2e-07
Identities = 38/127 (29%), Positives = 67/127 (51%), Gaps = 14/127 (11%)
Query: 45 YLVTV--LVLKTQIISSVTSDTGMSDILGQLPILCQKYIL--------GIIVPLSEELLF 94
YLV + +VL + + + G S+ L L + Q +++ ++ P+ EE++F
Sbjct: 391 YLVALPLVVLVSLVNQEIWQGQGGSNPLLSLALDSQNWLVLGIFFFTAAVLAPVFEEIIF 450
Query: 95 RSYIFGSITNK---KVAFLISSVLFALVHTGFSWYLLPYLILSFIITWVYSKRNNFIESA 151
R ++ ++T VA ++SS+LFA+ H S +LP +L I+ VYS+ N + S
Sbjct: 451 RGFLLPALTRYFPVSVAIILSSLLFAIAHLNVS-EILPLFVLGSILGLVYSRSRNLLSSM 509
Query: 152 IVHSSVN 158
I+HS N
Sbjct: 510 ILHSLWN 516
dbj|BAA19725| (D88802) transmembrane [Bacillus subtilis]
>gi|2632914|emb|CAB12420| (Z99107) ydiL [Bacillus
subtilis]
Length = 244
Score = 53.9 bits (127), Expect = 9e-07
Identities = 42/162 (25%), Positives = 76/162 (45%), Gaps = 7/162 (4%)
Query: 3 LVLILIFIIAWKLGYLKNTLKNWDLKRIFWLMGIVFFTLATNYLVTVLVLKTQIISSVTS 62
LV++L+ + L+N K+ I W + F L + + + I +
Sbjct: 57 LVVVLLILRTVPKETLRNGQKDSIGLSILWAIAGFFIALFSQGIAGSIEYYVFGIGRESE 116
Query: 63 DT-GMSDILGQLPILCQKYILGIIVPLSEELLFRSYIFGSI---TNKKVAFLISSVLFAL 118
+T + D++ +P++ + I+ P+ EE++FR IFG++ TN A LISSV+F +
Sbjct: 117 NTQAILDVIQAVPLMI--IVSSIVGPILEEIIFRKIIFGALYEKTNFFFAGLISSVIFGI 174
Query: 119 VHTGFSWYLLPYLILSFIITWVYSKRNNFIESAIVHSSVNLF 160
VH +LL Y + F ++Y++ H +N F
Sbjct: 175 VHADLK-HLLLYTAMGFTFAFLYARTKRIWVPIFAHLMMNTF 215
dbj|BAA11325| (D78257) ORF8 [Enterococcus faecalis]
Length = 120
Score = 47.3 bits (110), Expect = 9e-05
Identities = 32/89 (35%), Positives = 47/89 (51%), Gaps = 5/89 (5%)
Query: 81 ILGIIVPLSEELLFRSYIFGSI--TNKKVAFLISSVLFALVH--TGFSWYLLPYLILSFI 136
+LGI P+ EE++FR I G + N +A LISS LF ++H T F + + Y + I
Sbjct: 28 LLGIAAPIMEEIVFRGGIIGYLVENNALLAILISSFLFGIIHGPTNFISFGM-YFFMGII 86
Query: 137 ITWVYSKRNNFIESAIVHSSVNLFGGSAI 165
++ Y K + S +H NLF AI
Sbjct: 87 LSVSYYKTKDLRVSISIHFLNNLFPAIAI 115
sp|P45613|YPH1_MYCCA HYPOTHETICAL 37.9 KD PROTEIN IN PTSH 3'REGION (ORF1)
>gi|1076128|pir||B49683 ptsH 3'-region protein 1 -
Mycoplasma capricolum (SGC3) >gi|435098 (L22432) orf1
[Mycoplasma capricolum]
Length = 336
Score = 47.3 bits (110), Expect = 9e-05
Identities = 42/171 (24%), Positives = 83/171 (47%), Gaps = 16/171 (9%)
Query: 4 VLILIFIIAWKLGYLKNTLKNW--DLKRIFWLMGIVFFTLA-----TNYLVTVLVLKTQI 56
+L++IF + K+ LK+ +K + K++ + I F +A T Y + + LK +
Sbjct: 154 ILVIIFAFS-KINNLKSKVKKTFKENKKLLIPIAIAFAIVAFFVGNTLYSLIITELKLNL 212
Query: 57 ISS-----VTSDTGMSDILGQLPILCQKYILGIIVPLSEELLFRSYIFGSITNKKVAFLI 111
S + S + I + ++ + I PL EE++ R +F ++NK ++ ++
Sbjct: 213 GESKNQEGLVSPFKVQGITKYIYMVLFIILTVFIAPLCEEIVARQALFTGVSNKVLSIIV 272
Query: 112 SSVLFALVH--TGFSWYLLPYLILSFIITWVYS-KRNNFIESAIVHSSVNL 159
SS+ F ++H +G + + PY+I F + +S + N + HS NL
Sbjct: 273 SSLYFGILHISSGDVYNIFPYVIGGFFFSLAFSFSKGNLSYCWLSHSFYNL 323
gb|AAF13651.1|AF188935_49 (AF188935) pXO2-46 [Bacillus anthracis]
Length = 221
Score = 43.0 bits (99), Expect = 0.002
Identities = 30/126 (23%), Positives = 58/126 (45%), Gaps = 7/126 (5%)
Query: 36 IVFFTLATNYLVTVLVLKTQIISSVTSDTGMSDILGQLPILCQKYILGIIVPLSEELLFR 95
+V FT+ +V +V++ + + + ++P++ + GI+ P+ EE++FR
Sbjct: 89 VVLFTV----IVEQIVMRLLATGQPENQEQLLETGAEIPLILTLLVFGILSPILEEIIFR 144
Query: 96 SYIFGSITN---KKVAFLISSVLFALVHTGFSWYLLPYLILSFIITWVYSKRNNFIESAI 152
I +N +A +IS ++F L HT + YL + I+T Y N + I
Sbjct: 145 HIILNRFSNYIGTAIASIISIIIFTLFHTSQLSDIAIYLPGAVILTAAYLISNRSLAYVI 204
Query: 153 VHSSVN 158
+N
Sbjct: 205 AIHVLN 210
gb|AAD18544| (AE001624) CT254 hypothetical protein [Chlamydia pneumoniae]
Length = 257
Score = 42.6 bits (98), Expect = 0.002
Identities = 35/122 (28%), Positives = 55/122 (44%), Gaps = 16/122 (13%)
Query: 50 LVLKTQIISSVTSDTGMSDILGQLPILCQKYI-----LGIIVPLSEELLFRSYIFGSITN 104
LVL TQ + + ++ LPI YI LG++ P EE+ FR + + N
Sbjct: 131 LVLPTQ---EIHTQEVTQEVQNSLPITGH-YISMILNLGVLTPFGEEVFFRGILQTFLKN 186
Query: 105 KK---VAFLISSVLFALVHTGF---SWYLLPYL-ILSFIITWVYSKRNNFIESAIVHSSV 157
K A L SS++F+ +H SW +P L + S ++Y K + + +H
Sbjct: 187 KMTRIAAVLCSSIIFSFIHIEHSLGSWVFVPVLFVFSLSAGFLYEKDRHILSPIALHGLF 246
Query: 158 NL 159
NL
Sbjct: 247 NL 248
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.331 0.146 0.441
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46745952
Number of Sequences: 457798
Number of extensions: 1786862
Number of successful extensions: 9697
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9690
Number of HSP's gapped (non-prelim): 8
length of query: 177
length of database: 140,871,481
effective HSP length: 48
effective length of query: 129
effective length of database: 118,897,177
effective search space: 15337735833
effective search space used: 15337735833
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 93 (40.6 bits)