BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yweD (2247 kb reverse) BIO15.01
(281 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P39315|YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN RPLI-C... 158 4e-38
gb|AAF09604.1|AE001865_1 (AE001865) conserved hypothetical ... 139 2e-32
dbj|BAA10687| (D64005) hypothetical protein [Synechocystis ... 66 5e-10
emb|CAB60186.1| (AL132824) hypothetical protein SCAH10.32 [... 47 1e-04
emb|CAA07626| (AJ007731) hypothetical protein [Streptomyces... 47 1e-04
emb|CAB66272.1| (AL136519) hypothetical protein SCC57A.04c.... 45 6e-04
gi|2624954 (AF007101) unknown [Streptomyces hygroscopicus] 43 0.003
emb|CAA74532.1| (Y14083) hypothetical protein [Bacillus sub... 41 0.009
sp|P39315|YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN RPLI-CPDB INTERGENIC REGION (F286)
>gi|1361080|pir||S56436 hypothetical protein f286 -
Escherichia coli >gi|537052 (U14003) ORF_f286
[Escherichia coli] >gi|1790656 (AE000492) putative
oxidoreductase [Escherichia coli]
Length = 286
Score = 158 bits (396), Expect = 4e-38
Identities = 97/263 (36%), Positives = 136/263 (50%), Gaps = 3/263 (1%)
Query: 20 LKALVPISDIAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAP-G 78
L VP S I + R KA L A G VR ADY D AL A G+++LL +S + G
Sbjct: 19 LMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVG 78
Query: 79 NRQAEHQNVVDAAKSAGISYIAYTSFPQAERATSDLAADHIYTEKAIEKSGIAHTFLRNN 138
R +H+NV++AAK+AG+ +IAYTS A+ + LA +HI TEK + SGI +T LRN
Sbjct: 79 QRAPQHRNVINAAKAAGVKFIAYTSLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNG 138
Query: 139 WYFENEMPIIAAALSTGKFVYNAPTGKVGWALKREYAEVGAKALAGADFP-EVLELSG-K 196
WY EN + AAL G F+ A GK+ A + +YA A+ ++ A +V EL+G
Sbjct: 139 WYSENYLASAPAALEHGVFIGAAGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDS 198
Query: 197 ILTYAELAQALKAVSDKEFEVVAADDKTFVSHLVETGLPDFVAELFLGFQKDIEAKDLDV 256
T +LA L S K+ + F + L GLPD +A++ L
Sbjct: 199 AWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFD 258
Query: 257 ESKDFEKALGHSLTDTKEALKEL 279
+SK K +GH T E++ L
Sbjct: 259 DSKTLSKLIGHPTTTLAESVSHL 281
gb|AAF09604.1|AE001865_1 (AE001865) conserved hypothetical protein [Deinococcus radiodurans]
Length = 293
Score = 139 bits (348), Expect = 2e-32
Identities = 89/261 (34%), Positives = 138/261 (52%), Gaps = 5/261 (1%)
Query: 24 VPISDIAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAPGNRQAE 83
VP I + R KA L A G +R ADY+ ++A G+ RLL +S + N +A+
Sbjct: 31 VPADHIVAIVRNPAKAQGLFAPGVQIRQADYNSPEGWDRALAGVQRLLLISSSDLNDRAD 90
Query: 84 -HQNVVDAAKSAGISYIAYTSFPQAERATSDLAADHIYTEKAIEKSGIAHTFLRNNWYFE 142
H+ V++AA +AG+ +AYTS +A+ A LAADH TEK + +SG+ LRN WY E
Sbjct: 91 QHRTVIEAASAAGVELLAYTSLLKADTARMSLAADHQATEKLLTESGVPFVLLRNGWYLE 150
Query: 143 NEMPIIAAALSTGKFVYNAPTGKVGWALKREYAEVGAKALA-GADFPEVLELSG-KILTY 200
N +A AL TG + A TG++ A +++ AE A AL +V EL+G + +
Sbjct: 151 NY--DLAQALQTGSVLGAAGTGRISAASRKDLAEAAAAALTRDGQAGKVYELAGDEAFSL 208
Query: 201 AELAQALKAVSDKEFEVVAADDKTFVSHLVETGLPDFVAELFLGFQKDIEAKDLDVESKD 260
+ELA L S K+ + + + L GLP VA++ + + + +L++ + D
Sbjct: 209 SELAAELSKQSGKDVQYRNFAPEDYQRTLEGFGLPAPVAQMLVSSDEGVARGELELPNSD 268
Query: 261 FEKALGHSLTDTKEALKELLA 281
+ +G T KEA+ LA
Sbjct: 269 LRELIGRPSTSLKEAVASQLA 289
dbj|BAA10687| (D64005) hypothetical protein [Synechocystis sp.]
Length = 287
Score = 65.6 bits (157), Expect = 5e-10
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 3/215 (1%)
Query: 29 IAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAPGNRQAEHQNVV 88
+ + R ++A + +V ++ L +A +DR ++ + +A+ V
Sbjct: 29 VRAMVRDFDRAKKIAFPNVEVVEGNFDRPETLLEALAEVDRAFLLTNSTERAEAQQLAFV 88
Query: 89 DAAKSAGISYIAYTS-FPQAERATSDLAADHIYTEKAIEKSGIAHTFLRNNWYFENEMPI 147
DAA+ G+ +I S F + H E AI+ SG+ +TFLR N + + +
Sbjct: 89 DAARQNGVKHIVKLSQFAADAHSPVRFLRYHAAVEAAIQGSGMTYTFLRPNLFMQGLLNF 148
Query: 148 IAAALSTGKFVYNAPTGKVGWALKREYAEVGAKALAGADFP-EVLELSG-KILTYAELAQ 205
+ S F KV R+ A+V AL + ++ L+G + LT+AE+A+
Sbjct: 149 QSTITSQNAFYAAISDAKVSVVDVRDIADVAVVALTETEHEGKIYNLTGPQALTHAEMAE 208
Query: 206 ALKAVSDKEFEVVAADDKTFVSHLVETGLPDFVAE 240
L A +++ V + L+ G+P + A+
Sbjct: 209 QLSAALNRQIAFVDIPSEVMRDQLLNIGMPPWQAD 243
emb|CAB60186.1| (AL132824) hypothetical protein SCAH10.32 [Streptomyces coelicolor
A3(2)]
Length = 284
Score = 47.3 bits (110), Expect = 1e-04
Identities = 41/160 (25%), Positives = 68/160 (41%), Gaps = 13/160 (8%)
Query: 29 IAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAPGNRQAEHQNVV 88
+ VLAR E+ + +V +Y+D L++A G+ V+ + + + +
Sbjct: 25 VRVLARRPERVT-VTGPNVEVCAGEYADRPGLDRALNGVRAAFLVTNSA--TEPDDERFA 81
Query: 89 DAAKSAGISYIAYTSFPQAERATSDLAADHIYT------EKAIEKSGIAHTFLRNNWYFE 142
AA+ AG+ ++ S A + AD T E+A+ +SG+ TFLR +
Sbjct: 82 AAAREAGVRHLVKLSM----LAVGEPGADDFITRRQRENERAVRESGLDWTFLRARTFMS 137
Query: 143 NEMPIIAAALSTGKFVYNAPTGKVGWALKREYAEVGAKAL 182
N + A S G T V R+ AEV +AL
Sbjct: 138 NTLSWAPAIRSDGVVRALYGTSPVACVDPRDIAEVAVRAL 177
emb|CAA07626| (AJ007731) hypothetical protein [Streptomyces coelicolor]
Length = 284
Score = 47.3 bits (110), Expect = 1e-04
Identities = 41/160 (25%), Positives = 68/160 (41%), Gaps = 13/160 (8%)
Query: 29 IAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAPGNRQAEHQNVV 88
+ VLAR E+ + +V +Y+D L++A G+ V+ + + + +
Sbjct: 25 VRVLARRPERVT-VTGPNVEVCAGEYADRPGLDRALNGVRAAFLVTNSA--TEPDDERFA 81
Query: 89 DAAKSAGISYIAYTSFPQAERATSDLAADHIYT------EKAIEKSGIAHTFLRNNWYFE 142
AA+ AG+ ++ S A + AD T E+A+ +SG+ TFLR +
Sbjct: 82 AAAREAGVRHLVKLSM----LAVGEPGADDFITRRQRENERAVRESGLDWTFLRARTFMS 137
Query: 143 NEMPIIAAALSTGKFVYNAPTGKVGWALKREYAEVGAKAL 182
N + A S G T V R+ AEV +AL
Sbjct: 138 NTLSWAPAIRSDGVVRALYGTSPVACVDPRDIAEVAVRAL 177
emb|CAB66272.1| (AL136519) hypothetical protein SCC57A.04c. [Streptomyces
coelicolor A3(2)]
Length = 279
Score = 45.3 bits (105), Expect = 6e-04
Identities = 53/206 (25%), Positives = 88/206 (41%), Gaps = 36/206 (17%)
Query: 53 DYSDLTALEQAFTGIDRL-------LFVSGAPGNRQAEHQNVVDAAKSAGISYIAYTSFP 105
D++D T + A TG+D + L V GAP A + V + + ++ P
Sbjct: 43 DWNDSTTWQPALTGVDAVYVSYQPDLAVPGAPEAIGAFAELAVRTG-ARRLVLLSGRGEP 101
Query: 106 QAERATSDLAADHIYTEKAIEKSGIAHTFLRNNWYFENEM------PIIAAALSTGKFVY 159
+AE EKA+ SG T LR +++ +N P++ L+
Sbjct: 102 EAEAC-----------EKALAASGAQWTVLRASFFAQNFSEGDFLGPVLEGELAL----- 145
Query: 160 NAPTGKVG--WALKREYAEVGAKALA-GADFPEVLELSG-KILTYAELAQALKAVSDKEF 215
P G V + + AEV A LA G +L+G ++LT+A+ A+ A + +E
Sbjct: 146 --PVGDVQEPFVDADDIAEVAATVLAEGGHTGRTYDLTGPRLLTFAQATAAIGAATGREI 203
Query: 216 EVVAADDKTFVSHLVETGLPDFVAEL 241
V + + + L G+PD V +L
Sbjct: 204 GYVTVPAEAYAAELAAHGVPDTVTDL 229
gi|2624954 (AF007101) unknown [Streptomyces hygroscopicus]
Length = 282
Score = 43.0 bits (99), Expect = 0.003
Identities = 35/119 (29%), Positives = 55/119 (45%), Gaps = 4/119 (3%)
Query: 29 IAVLARTEEKAAPLKAAGFDVRLADYSDLTALEQAFTGIDRLLFVSGAPGNRQAEHQNVV 88
+ VL R E A A DV D +D +L A G++R + PG QA +V
Sbjct: 26 VRVLTRNPEGARRW-AKAVDVVTGDLADPGSLGAALDGVERAFLLLVLPGVPQA--GPIV 82
Query: 89 DAAKSAGISYIAYTSFPQAERA-TSDLAADHIYTEKAIEKSGIAHTFLRNNWYFENEMP 146
A + AG+ ++A S +A A S + ++ E ++ SG+ T LR + N +P
Sbjct: 83 AAVRDAGVRHVALLSSIRAGSARDSAIKQVNLAAEAVVQGSGLDWTVLRGGTFMSNTLP 141
emb|CAA74532.1| (Y14083) hypothetical protein [Bacillus subtilis]
>gi|2633362|emb|CAB12866| (Z99109) similar to
hypothetical proteins [Bacillus subtilis]
Length = 214
Score = 41.4 bits (95), Expect = 0.009
Identities = 38/129 (29%), Positives = 56/129 (42%), Gaps = 18/129 (13%)
Query: 25 PISDIAVLARTEEKAAPLKAAGFDVRLADY-SDLTALEQAFTGIDRLLFVSGAPGNRQAE 83
P I + R EE+ A L+AAG + LA+ + A G D ++F +G+ G+ +
Sbjct: 24 PDHSIRAMVRKEEQKASLEAAGAEAVLANLEGSPEEIAAAAKGCDAIIFTAGSGGSTGYD 83
Query: 84 HQNVVD---------AAKSAGISYIAYTSFPQA-------ERATSDLAADHIYTEKAIEK 127
+VD AA AGI S QA E A H Y +K +E
Sbjct: 84 KTLLVDLDGAAKAIEAAAIAGIKRFIMVSALQAHNRENWNEALKPYYVAKH-YADKILEA 142
Query: 128 SGIAHTFLR 136
SG+ +T +R
Sbjct: 143 SGLTYTIIR 151
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.316 0.132 0.364
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65485189
Number of Sequences: 457798
Number of extensions: 2654537
Number of successful extensions: 6917
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6908
Number of HSP's gapped (non-prelim): 8
length of query: 281
length of database: 140,871,481
effective HSP length: 60
effective length of query: 221
effective length of database: 113,403,601
effective search space: 25062195821
effective search space used: 25062195821
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 95 (41.4 bits)