BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yweA (2240 kb reverse) BIO13.08
(406 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S58131 integral membrane protein LmrP - Lactococcus la... 287 1e-76
gb|AAF12588.1|AE001826_57 (AE001826) integral membrane prot... 159 3e-38
sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-A... 75 9e-13
gb|AAF04096.1|AF188291_2 (AF188291) 12-TMS multidrug efflux... 61 3e-08
emb|CAA15134| (AJ235272) BICYCLOMYCIN RESISTANCE PROTEIN (b... 47 3e-04
sp|P51564|TCR8_PASMU TETRACYCLINE RESISTANCE PROTEIN, CLASS... 45 0.002
emb|CAA15047| (AJ235272) BICYCLOMYCIN RESISTANCE PROTEIN (b... 44 0.003
emb|CAA76069| (Y16103) tetracycline resistance efflux prote... 43 0.005
emb|CAA75663| (Y15510) tetracycline resistance efflux prote... 43 0.005
gi|3860032 (AF090987) drug efflux protein TetA [Agrobacteri... 43 0.005
pir||S58131 integral membrane protein LmrP - Lactococcus lactis
>gi|1052754|emb|CAA61918| (X89779) LmrP integral
membrane protein [Lactococcus lactis]
Length = 408
Score = 287 bits (726), Expect = 1e-76
Identities = 145/403 (35%), Positives = 228/403 (55%)
Query: 1 MKDFFGLHPTLKIRLIMNFFGTLCFSTVGGSMTIYYNKYMGAGITGLLLVISSVMVFLVG 60
MK+F+ L L++RL + F G + TV SMTIYYN+Y+G+ ITG+LL +S+V F+ G
Sbjct: 1 MKEFWNLDKNLQLRLGIVFLGAFSYGTVFSSMTIYYNQYLGSAITGILLALSAVATFVAG 60
Query: 61 LYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTXXXXXXXXXXXXXXXT 120
+ AG +D GR+PVM+F T I G ALA +N + NPW T T
Sbjct: 61 ILAGFFADRNGRKPVMVFGTIIQLLGAALAIASNLPGHVNPWSTFIAFLLISFGYNFVIT 120
Query: 121 ASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWFFRDYLVWLLLAITIEEIVSC 180
A AMI+D + +ENR+VV+ + YW N ++++G+ L W FR LL+ + + +VS
Sbjct: 121 AGNAMIIDASNAENRKVVFMLDYWAQNLSVILGAALGAWLFRPAFEALLVILLLTVLVSF 180
Query: 181 LVVIFWIDESFNPDTQQHKQESNIIKAYFTVAKDRIFMYYLFASVFIAMIFNQIDYYLPV 240
+ F + E+F P + ++ NI +AY TV +D+ +M ++ A++ I Q D +LPV
Sbjct: 181 FLTTFVMTETFKPTVKVDEKAENIFQAYKTVLQDKTYMIFMGANIATTFIIMQFDNFLPV 240
Query: 241 HLSDSFRTARIFGIEVYGQRMLTIFLMVNTLVIVLFMGRVNKLTKNWXXXXXXXXXXXXX 300
HLS+SF+T +G E+YGQRMLTI+L++ +++VL M +N+LTK+W
Sbjct: 241 HLSNSFKTITFWGFEIYGQRMLTIYLILACVLVVLLMTTLNRLTKDWSHQKGFIWGSLFM 300
Query: 301 XXXFMIAFLGRDLTWELIAALVATIGEMILVPFSQALRADLMDGDQVGTYTGAFSVTQPI 360
+ +FL T IA +V T+GE++ P Q L ADLM+ +++G+Y G ++ PI
Sbjct: 301 AIGMIFSFLTTTFTPIFIAGIVYTLGEIVYTPSVQTLGADLMNPEKIGSYNGVAAIKMPI 360
Query: 361 AXXXXXXXXXXXXXYGNIGMTIFMFFIIVLGVLPSLRAIRMHE 403
A IG+++ + VL ++ L A+ H+
Sbjct: 361 ASILAGLLVSISPMIKAIGVSLVLALTEVLAIILVLVAVNRHQ 403
gb|AAF12588.1|AE001826_57 (AE001826) integral membrane protein LmrP [Deinococcus radiodurans]
Length = 432
Score = 159 bits (399), Expect = 3e-38
Identities = 106/404 (26%), Positives = 190/404 (46%), Gaps = 15/404 (3%)
Query: 7 LHPTLKIRLIMNFFGTLCFSTVGGSMTIYYNKYMGAGITGLLLVISSVMVFLVGLYAGHL 66
LHP +K+R+I +F + + M +Y+ Y+GAG+ GLLL+ + F+ GLY G L
Sbjct: 19 LHPNIKVRIINSFLTRMVGGAIFPFMAVYFAHYLGAGLAGLLLMALVAVQFVAGLYGGGL 78
Query: 67 SDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTXXXXXXXXXXXXXXXTASQAMI 126
+D GRR ++ + A A + + PWVT A++AM+
Sbjct: 79 ADAWGRRRTLLAGEVLKLLAFA-ALLLGNLWTPLPWVTFAALAVINVANGLINPAAEAML 137
Query: 127 VDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWFFRDYLVWLLLAITIEEIVSCLVVIFW 186
VD++T + R +Y + YW +N ++++G+ L GW ++D+ LL + V+ + +
Sbjct: 138 VDVSTPDTRTFMYVVNYWAVNASLLLGTLLGGWLYQDHFAALLAGLLGMSFVTLFLAWRF 197
Query: 187 IDESFN--PDTQQHKQES----NIIKAYFTVAKDRIFMYYLFASVFIAMIFNQIDYYLPV 240
+ E+ T +ES ++++Y V DR ++ + V + I ++PV
Sbjct: 198 MSETLGGLRRTAAQVRESVGVRPLLRSYAQVMTDRPYVLFTLGFVLLMTIEFGRQNFIPV 257
Query: 241 HLSDSFRTARIFGIEVYGQRMLTIFLMVNTLVIVLFMGRVNKLTKNWXXXXXXXXXXXXX 300
HL+ SF ++G+ + G +++++ +NTL+IV+ V+ +W
Sbjct: 258 HLAQSFPAQVLWGVNLTGIKVMSLVTAINTLLIVVLTLPVS----HWVGKRELRPVMALG 313
Query: 301 XXXFMIAF---LGRDLTWELIA-ALVATIGEMILVPFSQALRADLMDGDQVGTYTGAFSV 356
F + F G W L+A ++V +IGE++ VP Q L ADL+ ++ G+Y
Sbjct: 314 FLLFAVGFAALYGSLNLWALVAGSVVLSIGELLYVPARQTLLADLIPEEKRGSYLAVNGQ 373
Query: 357 TQPIAXXXXXXXXXXXXXYGNIGMTIFMFFIIVLGVLPSLRAIR 400
+A G M + + VL V+ SLR +R
Sbjct: 374 VFTLAKWLATLGVPLGAQIGGPWMGVLIVLFGVLAVVLSLRGLR 417
sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
>gi|1303973|dbj|BAA12628| (D84432) YqjV [Bacillus
subtilis] >gi|2634808|emb|CAB14305| (Z99116) similar to
multidrug resistance protein [Bacillus subtilis]
Length = 410
Score = 75.3 bits (182), Expect = 9e-13
Identities = 78/362 (21%), Positives = 139/362 (37%), Gaps = 18/362 (4%)
Query: 1 MKDFFGLHPTLKIRLIMNFFGTLCFSTVGGSMTIYYNKYMGAGIT--GLLLVISSVMVFL 58
MK + +HP +I FG + S + IY GA + GL++ SS + L
Sbjct: 1 MKKWKDIHPISWTIIIGTIFGRMATSMSIPFLAIYLTAVQGASASYAGLVIAASSSVGIL 60
Query: 59 VGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTXXXXXXXXXXXXXX 118
Y G++SD GR+ +M+ S I G+ A FA +S N WV
Sbjct: 61 ASFYGGYISDKFGRKNMMLVS--IFGWMLVFAGFAAAS---NLWVFFVVNALNGLCKSLF 115
Query: 119 XTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWFFRDYLVWLLLAITIEEIV 178
AS+A++ D+T + R +V++++Y IN ++ G L +F L + I
Sbjct: 116 EPASKALLSDMTEEKTRLLVFNLRYAAINIGVVFGPVLGLYFGSSQSTTPFLVPAV--IY 173
Query: 179 SCLVVIFWIDESFNPDTQQHKQESN--IIKAYFTVAKDRIFMYYLFASVFIAMIFNQIDY 236
++ + +P Q N + +A+ KD +F L ++Q
Sbjct: 174 GLYGIVLALQFKKHPSLSAPAQSRNMSVREAFMVTQKDYLFTIALVGITLCTFGYSQFSS 233
Query: 237 YLPVHLSDSFRTARIFGIEVYGQRMLTIFLMVNTLVIVLFMGRVNKLTKNWXXXXXXXXX 296
P +++ + G ++YG + L +N +V++ + K +
Sbjct: 234 TFPQYMAQNPLIGN--GTKLYG-----LMLTLNAIVVLATQFPIVHFAKRFSPLCSLMLG 286
Query: 297 XXXXXXXFMIAFLGRDLTWELIAALVATIGEMILVPFSQALRADLMDGDQVGTYTGAFSV 356
I + + ++ + TIGE++L + GTY GA
Sbjct: 287 NVMVSISMAIFTVSHGVPSIVMIVITFTIGEVLLFSMMDLYVDQIAKPGLKGTYFGAIGF 346
Query: 357 TQ 358
Q
Sbjct: 347 PQ 348
gb|AAF04096.1|AF188291_2 (AF188291) 12-TMS multidrug efflux protein homolog [Salmonella
typhi]
Length = 413
Score = 60.5 bits (144), Expect = 3e-08
Identities = 62/258 (24%), Positives = 102/258 (39%), Gaps = 19/258 (7%)
Query: 31 SMTIYYNKYMGAG--ITGLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGA 88
S+ +Y + MG I G+++ + F GHLSD GR+ ++I + AI
Sbjct: 41 SVLPFYIREMGGSPLIIGIIIATEAFSQFCAAPLIGHLSDRVGRKRILIVTLAIAAISLL 100
Query: 89 LATFANSSFYFNPWVTXXXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINF 148
L A + +A+ A I D T NRR I I
Sbjct: 101 LLANAQCILFI------LLARTLFGISAGNLSAAAAYIADCTHVRNRRQAIGILTGCIGL 154
Query: 149 AIMIGSGLSGWFFRDYLVWLLLAITIEEIVSCLVVIFWIDESFNPDTQQHKQESNIIKAY 208
++G+G+SGW R L + A I + + LV I+ + + K S +A
Sbjct: 155 GGIVGAGVSGWLSRISLGAPIYAAFILVLGAALVAIWGLKDPSTTSRTTDKIASFSARAI 214
Query: 209 FTVAKDRIFMYYLFASVFIAMIFNQIDYYLPVHLSDSFRTARIFGIEVYGQRMLTIFLM- 267
+ R+ + + F + LPV LSD+F I+ +G + L+ LM
Sbjct: 215 LKMPVLRVLIIVMLCHFF---AYGMYSSQLPVFLSDTF----IWNGLPFGPKALSYLLMA 267
Query: 268 ---VNTLVIVLFMGRVNK 282
+N V + +G V++
Sbjct: 268 DGVINIFVQLFLLGWVSQ 285
emb|CAA15134| (AJ235272) BICYCLOMYCIN RESISTANCE PROTEIN (bcr2) [Rickettsia
prowazekii]
Length = 391
Score = 46.9 bits (109), Expect = 3e-04
Identities = 53/232 (22%), Positives = 101/232 (42%), Gaps = 22/232 (9%)
Query: 44 ITGLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWV 103
+T LLL ++ + + L G+L D GRRP++I I G FAN N +
Sbjct: 38 MTELLLGVNLISYCITSLIVGNLGDKYGRRPIIIIGLLIFNLGSLFCVFAN-----NYEI 92
Query: 104 TXXXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAI----MIGSGLS-G 158
++ D+ + + ++ + I I ++ +IGS ++
Sbjct: 93 ILFGRFFQGCGIAPVAVLVYVVLADIYSIQEQQKLMGILNGTIALSMAVAPVIGSYVNLF 152
Query: 159 WFFRDYLVWLLLAITIEEIVSCLVVIFWIDESFNPDTQQHKQESNIIKAYFTVAKDRIFM 218
W +R + LLL++ ++S ++ IF+I P Q +K+ S +K Y + K +
Sbjct: 153 WGWRANFI-LLLSV---GLISLILGIFFI-----PKGQINKKISVSLKEYIPIFKSPKAI 203
Query: 219 YYLFASVFIAMIFNQIDYYLPV-HLSDSFRTARIFGIEVYGQRMLTIFLMVN 269
YY+ +F+A + P+ ++ D T FG+ Y M +F +++
Sbjct: 204 YYILTMIFLAQGYWIFIGIAPILYMQDLGVTLEYFGL--YQGAMAALFSIMS 253
sp|P51564|TCR8_PASMU TETRACYCLINE RESISTANCE PROTEIN, CLASS H (TETA(H)) >gi|392873
(U00792) tetracycline resistance protein [Pasteurella
multocida]
Length = 400
Score = 44.5 bits (103), Expect = 0.002
Identities = 42/196 (21%), Positives = 81/196 (40%), Gaps = 19/196 (9%)
Query: 46 GLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTX 105
G+LL + + M + G LSD GR+P+++FS GA + +F W+
Sbjct: 44 GVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLL-----GAALDYLLMAFSTTLWMLY 98
Query: 106 XXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWF--FRD 163
+ AM D+T ++NR + + ++IG L G
Sbjct: 99 IGRIIAGITGATGAVCASAM-SDVTPAKNRTRYFGFLGGVFGVGLIIGPMLGGLLGDISA 157
Query: 164 YLVWLLLAITIEEIVSCLVVIFWIDESFNP-----DTQQHKQESNIIKAYFTVAKDRIFM 218
++ ++ AI+ I+ L ++F+ + T +++ SN + +F + +
Sbjct: 158 HMPFIFAAIS-HSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKS-----L 211
Query: 219 YYLFASVFIAMIFNQI 234
Y+ A+ FI + QI
Sbjct: 212 YFWLATYFIIQLIGQI 227
emb|CAA15047| (AJ235272) BICYCLOMYCIN RESISTANCE PROTEIN (bcr1) [Rickettsia
prowazekii]
Length = 407
Score = 43.8 bits (101), Expect = 0.003
Identities = 48/200 (24%), Positives = 81/200 (40%), Gaps = 20/200 (10%)
Query: 44 ITGLLLVISSVMVFL---VGLYA-GHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYF 99
I G + ++S + FL VG+ + G LSD+ GRRP+++ I + + S F F
Sbjct: 39 IDGCITQMTSTLYFLGFAVGILSLGRLSDIYGRRPIVLLGLFI-----YIVSSIISIFSF 93
Query: 100 NPWVTXXXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGW 159
N + Q+M D VY+I + F +GS + G+
Sbjct: 94 NIEMLMIARFIQAFGVSVGSVIGQSMARDSYQGAELSYVYAILSPWLLFIPALGSYIGGY 153
Query: 160 FFRDYLVWLLLAITIEEIVSCLVVIFWIDESFNPDTQQH---KQESNIIKAYFTVAKDRI 216
+YL W + I + L+ +++ P+T + Q S + + + KD++
Sbjct: 154 II-EYLSWHYVFIFFSLAGTILLALYY---QILPETNYYIAFSQSSKYFEVFNIIIKDKM 209
Query: 217 FMYYLFASVFIAMIFNQIDY 236
Y FI FN I Y
Sbjct: 210 LWLY----AFIIGAFNGIYY 225
emb|CAA76069| (Y16103) tetracycline resistance efflux protein of class H
[Pasteurella haemolytica]
Length = 400
Score = 43.0 bits (99), Expect = 0.005
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 46 GLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTX 105
G+LL + + M + G LSD GR+P+++FS GA + +F W+
Sbjct: 44 GVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLL-----GAALDYLLMAFSTTLWMLY 98
Query: 106 XXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWF--FRD 163
+ AM D+T ++NR + ++IG L G
Sbjct: 99 IGRIIAGITGATGAVCASAM-SDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISA 157
Query: 164 YLVWLLLAITIEEIVSCLVVIFWIDESFNP-----DTQQHKQESNIIKAYFTVAKDRIFM 218
++ ++ AI+ I+ L ++F+ + T +++ SN + +F + +
Sbjct: 158 HMPFIFAAIS-HSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKS-----L 211
Query: 219 YYLFASVFIAMIFNQI 234
Y+ A+ FI + QI
Sbjct: 212 YFWLATYFIIQLIGQI 227
emb|CAA75663| (Y15510) tetracycline resistance efflux protein of class H
[Pasteurella multocida]
Length = 400
Score = 43.0 bits (99), Expect = 0.005
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 46 GLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTX 105
G+LL + + M + G LSD GR+P+++FS GA + +F W+
Sbjct: 44 GVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLL-----GAALDYLLMAFSTTLWMLY 98
Query: 106 XXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWF--FRD 163
+ AM D+T ++NR + ++IG L G
Sbjct: 99 IGRIIAGITGATGAVCASAM-SDVTPAKNRTRYFGFLGGAFGVGLIIGPMLGGLLGDISA 157
Query: 164 YLVWLLLAITIEEIVSCLVVIFWIDESFNP-----DTQQHKQESNIIKAYFTVAKDRIFM 218
++ ++ AI+ I+ L ++F+ + T +++ SN + +F + +
Sbjct: 158 HMPFIFAAIS-HSILLILSLLFFRETQKREALVANRTPENQTASNTVTVFFKKS-----L 211
Query: 219 YYLFASVFIAMIFNQI 234
Y+ A+ FI + QI
Sbjct: 212 YFWLATYFIIQLIGQI 227
gi|3860032 (AF090987) drug efflux protein TetA [Agrobacterium tumefaciens]
Length = 394
Score = 43.0 bits (99), Expect = 0.005
Identities = 38/145 (26%), Positives = 61/145 (41%), Gaps = 6/145 (4%)
Query: 46 GLLLVISSVMVFLVGLYAGHLSDVQGRRPVMIFSTAITGFGGALATFANSSFYFNPWVTX 105
G++L + +VM F+ G LSD GRRPV++ S A G L + +F WV
Sbjct: 44 GVMLGVFAVMQFVFSPILGALSDRFGRRPVLLLSLA-----GTLLDYLVMAFSPLGWVLV 98
Query: 106 XXXXXXXXXXXXXXTASQAMIVDLTTSENRRVVYSIQYWIINFAIMIGSGLSGWFFRDYL 165
AS A I D+T +E R + +++ +IG + G +L
Sbjct: 99 VGRAMAGITSANMAVAS-AYITDITPAEQRAQRFGTVGAVMSLGFIIGPVIGGVIGAWWL 157
Query: 166 VWLLLAITIEEIVSCLVVIFWIDES 190
L + ++ V +F + ES
Sbjct: 158 RAPFLVAALFNGLNLFVALFVLPES 182
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.331 0.144 0.439
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93069729
Number of Sequences: 457798
Number of extensions: 3360870
Number of successful extensions: 10151
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10143
Number of HSP's gapped (non-prelim): 10
length of query: 406
length of database: 140,871,481
effective HSP length: 51
effective length of query: 355
effective length of database: 117,523,783
effective search space: 41720942965
effective search space used: 41720942965
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 97 (42.2 bits)