BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ytjH (2000 kb reverse) BIO15.01
(235 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P42096|LAXC_LACLA LACX PROTEIN, CHROMOSOMAL >gi|581298|e... 146 2e-34
pir||S25782 hypothetical protein, 35K - Lactococcus lactis ... 145 4e-34
sp|P23496|LAXP_LACLA LACX PROTEIN, PLASMID >gi|97946|pir||D... 145 5e-34
dbj|BAA17544| (D90907) hypothetical protein [Synechocystis ... 71 9e-12
sp|P39840|YOXA_BACSU HYPOTHETICAL 37.2 KD PROTEIN IN PBP-GG... 43 0.002
gb|AAD20257| (AF092042) mutarotase [Lactococcus lactis subs... 43 0.002
gb|AAD20245| (AF092040) mutarotase [Lactococcus lactis subs... 43 0.003
sp|P42096|LAXC_LACLA LACX PROTEIN, CHROMOSOMAL >gi|581298|emb|CAA42987| (X60456) 35 kD
protein,identical with protein X [Lactococcus lactis]
Length = 299
Score = 146 bits (365), Expect = 2e-34
Identities = 90/243 (37%), Positives = 132/243 (54%), Gaps = 12/243 (4%)
Query: 1 MNYTLKNDHLNVVVDTFGAEMHSIQHDD-IEYLWQADAKFWGRHAPVLFPIVGKLKN--G 57
M LKN++L V T G ++ SI+ D +EYLWQAD ++W AP+LFPI G L+N
Sbjct: 1 MTIELKNEYLTVQFKTLGGQLTSIKDKDGLEYLWQADPEYWNGQAPILFPICGSLRNDWA 60
Query: 58 EYRYNDKTYKMG---GHGFARDNDFELIKKSADELVFELRDNEDSLNHYPFHFVFRVSYK 114
YR D+ + G HGF R +F L + + + + F ++ N + L++Y + F RV Y
Sbjct: 61 IYRPQDRPFFTGLIRRHGFVRKEEFTLEEVNENSVTFSIKPNAEMLDNYLYQFELRVVYT 120
Query: 115 LVDNKIRVRYEVKN-EDEKFMSFGVGAHPAFNVPLKNG-TFEDYQLTISPDEKRTFIPLD 172
L IR ++V N E EK M + +GAHPAFN PL G +EDY L S E +
Sbjct: 121 LNGKSIRTEFQVTNLETEKTMPYFIGAHPAFNCPLVEGEKYEDYSLEFSEVESCSIPKSF 180
Query: 173 PPSGTLKLDER---VESQVSQLPLTRALFDKDALVYTSSKEMKVSLTNKLDDHGVSLTWK 229
P +G L L +R +E+Q S L L +LF DA+ K V+L ++ G+ + +
Sbjct: 181 PETGLLDLQDRTPFLENQKS-LDLDYSLFSHDAITLDRLKSRSVTLRSRKSGKGLRVDFD 239
Query: 230 NMP 232
+ P
Sbjct: 240 DFP 242
pir||S25782 hypothetical protein, 35K - Lactococcus lactis
>gi|1093221|prf||2103190B pbg downstream ORF 2
[Lactococcus lactis]
Length = 299
Score = 145 bits (362), Expect = 4e-34
Identities = 89/239 (37%), Positives = 131/239 (54%), Gaps = 12/239 (5%)
Query: 5 LKNDHLNVVVDTFGAEMHSIQHDD-IEYLWQADAKFWGRHAPVLFPIVGKLKN--GEYRY 61
LKN++L V T G ++ SI+ D +EYLWQAD ++W AP+LFPI G L+N YR
Sbjct: 5 LKNEYLTVQFKTLGGQLTSIKDKDGLEYLWQADPEYWNGQAPILFPICGSLRNDWAIYRP 64
Query: 62 NDKTYKMG---GHGFARDNDFELIKKSADELVFELRDNEDSLNHYPFHFVFRVSYKLVDN 118
D+ + G HGF R +F L + + + + F ++ N + L++Y + F RV Y L
Sbjct: 65 QDRPFFTGLIRRHGFVRKEEFTLEEVNENSVTFSIKPNAEMLDNYLYQFELRVVYTLNGK 124
Query: 119 KIRVRYEVKN-EDEKFMSFGVGAHPAFNVPLKNG-TFEDYQLTISPDEKRTFIPLDPPSG 176
IR ++V N E EK M + +GAHPAFN PL G +EDY L S E + P +G
Sbjct: 125 SIRTEFQVTNLETEKTMPYFIGAHPAFNCPLVEGEKYEDYSLEFSEVESCSIPKSFPETG 184
Query: 177 TLKLDER---VESQVSQLPLTRALFDKDALVYTSSKEMKVSLTNKLDDHGVSLTWKNMP 232
L L +R +E+Q S L L +LF DA+ K V+L ++ G+ + + + P
Sbjct: 185 LLDLQDRTPFLENQKS-LDLDYSLFSHDAITLDRLKSRSVTLRSRKSGKGLRVDFDDFP 242
sp|P23496|LAXP_LACLA LACX PROTEIN, PLASMID >gi|97946|pir||D23696 lacX protein -
Lactococcus lactis >gi|149413 (M60447) ORF [Lactococcus
lactis]
Length = 299
Score = 145 bits (361), Expect = 5e-34
Identities = 89/243 (36%), Positives = 132/243 (53%), Gaps = 12/243 (4%)
Query: 1 MNYTLKNDHLNVVVDTFGAEMHSIQHDD-IEYLWQADAKFWGRHAPVLFPIVGKLKN--G 57
M LKN++L V T G ++ SI+ D +EYLWQAD ++W AP+LFPI G L+N
Sbjct: 1 MTIELKNEYLTVQFKTLGGQLTSIKDKDGLEYLWQADPEYWNGQAPILFPICGSLRNDWA 60
Query: 58 EYRYNDKTYKMG---GHGFARDNDFELIKKSADELVFELRDNEDSLNHYPFHFVFRVSYK 114
YR ++ + G HGF R +F L + + + + F ++ N + L++Y + F RV Y
Sbjct: 61 IYRPQERPFFTGLIRRHGFVRKEEFTLEEVNENSVTFSIKPNAEMLDNYLYQFELRVVYT 120
Query: 115 LVDNKIRVRYEVKN-EDEKFMSFGVGAHPAFNVPLKNG-TFEDYQLTISPDEKRTFIPLD 172
L IR ++V N E EK M + +GAHPAFN PL G +EDY L S E +
Sbjct: 121 LNGKSIRTEFQVTNLETEKTMPYFIGAHPAFNCPLVEGEKYEDYSLEFSEVESCSIPKSF 180
Query: 173 PPSGTLKLDER---VESQVSQLPLTRALFDKDALVYTSSKEMKVSLTNKLDDHGVSLTWK 229
P +G L L +R +E+Q S L L +LF DA+ K V+L ++ G+ + +
Sbjct: 181 PETGLLDLQDRTPFLENQKS-LDLDYSLFSHDAITLDRLKSRSVTLRSRKSGKGLRVDFD 239
Query: 230 NMP 232
+ P
Sbjct: 240 DFP 242
dbj|BAA17544| (D90907) hypothetical protein [Synechocystis sp.]
Length = 289
Score = 71.0 bits (171), Expect = 9e-12
Identities = 35/103 (33%), Positives = 57/103 (54%), Gaps = 3/103 (2%)
Query: 45 PVLFPIVGKLKNGEYRYNDKTYKMGGHGFARDNDFELIKKSADE---LVFELRDNEDSLN 101
P+LFPI G L ++ + K+Y++ HGFARD +E+I + + L L N+ +L
Sbjct: 65 PILFPICGNLPQDQFNHAGKSYRLKQHGFARDLPWEVIGQQTQDNARLDLRLSHNDATLE 124
Query: 102 HYPFHFVFRVSYKLVDNKIRVRYEVKNEDEKFMSFGVGAHPAF 144
+PF F SY+L + +R+ + N ++ M F +G HP F
Sbjct: 125 AFPFAFELVFSYQLQGHSLRIEQRIANLGDQRMPFSLGFHPYF 167
sp|P39840|YOXA_BACSU HYPOTHETICAL 37.2 KD PROTEIN IN PBP-GGT INTERGENIC REGION
>gi|2634219|emb|CAB13719| (Z99113) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 325
Score = 43.4 bits (100), Expect = 0.002
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 45 PVLFPIVGKLKNGEYRYNDKTYKMGG---------HGFARDNDFELI--KKSADELVFEL 93
P+LFP ++ +G + + +TY HGF + ++ K++ + ++ E
Sbjct: 67 PILFP-PNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVIVET 125
Query: 94 RDNEDSLNH----YPFHFVFRVSYKLVDNKIRVRYEVKNEDEKFMSFGVGAHPAFNVPLK 149
+ L H +P H V R++Y + +N + V N+ ++ +G+G H F P +
Sbjct: 126 EIDLSELPHVQKQFPHHAVVRMTYTIKENTLFKHATVMNKGKEAFPWGIGYHTTFIFPAE 185
Query: 150 NGTF 153
+ F
Sbjct: 186 SSLF 189
gb|AAD20257| (AF092042) mutarotase [Lactococcus lactis subsp. lactis]
Length = 334
Score = 43.0 bits (99), Expect = 0.002
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 24/179 (13%)
Query: 4 TLKNDHLNVVVDTFGAEMHSIQHDDIEYLW----------QADAKFWGRHAPVLFPIVGK 53
TL N+ L +VV +GA +H + D + + A G + + P+ G+
Sbjct: 22 TLSNERLTIVVHDYGARVHQLLTPDKNGTFENILLSKNNSETYANDGGYYGVICGPVAGR 81
Query: 54 LKNGEY-------RYNDKTYKMGGHGFARDN-DFELIKKSAD-ELVFELRDNEDSLNHYP 104
+ Y G HG+ R +E + ++ + LRD E +P
Sbjct: 82 ISGATYDSVSLEANEGKNNLHSGSHGWERQFWSYETFETASSLGIKLSLRDEESG---FP 138
Query: 105 FHFVFRVSYKLVDNKIRVRYEVKNEDEKFMSFGVGAHPAFNVPLKNGTFEDYQLTISPD 163
V+YKL DNK+ V + + F HP FN+ + T ++ + + D
Sbjct: 139 GQIQAEVTYKLTDNKLEVTISGLSVTDTV--FNPAWHPYFNLSAELSTTHEHFIQANVD 195
gb|AAD20245| (AF092040) mutarotase [Lactococcus lactis subsp. lactis]
Length = 334
Score = 42.6 bits (98), Expect = 0.003
Identities = 41/179 (22%), Positives = 71/179 (38%), Gaps = 24/179 (13%)
Query: 4 TLKNDHLNVVVDTFGAEMHSIQHDDIE------YLWQADAKFW----GRHAPVLFPIVGK 53
TL N+ L +VV +GA H + D L + D++ + G + + P+ G+
Sbjct: 22 TLSNERLTIVVHDYGARAHQLLTPDKNGTFENILLSKNDSETYANDGGYYGVICGPVAGR 81
Query: 54 LKNGEY-------RYNDKTYKMGGHGFARDN-DFELIKKSAD-ELVFELRDNEDSLNHYP 104
+ Y G HG+ R +E + ++ + LRD E +P
Sbjct: 82 ISGATYDSVSLEANEGKNNLHSGSHGWERQFWSYETFETASSLGIKLSLRDEESG---FP 138
Query: 105 FHFVFRVSYKLVDNKIRVRYEVKNEDEKFMSFGVGAHPAFNVPLKNGTFEDYQLTISPD 163
V+YKL DNK+ V + + F HP FN+ + T ++ + + D
Sbjct: 139 GQIQAEVTYKLTDNKLEVTISGLSVTDTV--FNPAWHPYFNLSAELSTTHEHFIQANVD 195
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.319 0.138 0.415
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71931980
Number of Sequences: 457798
Number of extensions: 3134150
Number of successful extensions: 6664
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6641
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 140,871,481
effective HSP length: 52
effective length of query: 183
effective length of database: 117,065,985
effective search space: 21423075255
effective search space used: 21423075255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 94 (41.0 bits)