BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ytdE (1937 kb reverse) BIO15.01
(196 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA75618| (Y15422) hypothetical protein [Lactococcus la... 338 2e-92
gi|4009494 (AF068904) YlmF [Staphylococcus aureus] 72 3e-12
emb|CAB13413| (Z99112) similar to hypothetical proteins [Ba... 66 2e-10
gi|4009472 (AF068901) YlmF [Streptococcus pneumoniae] 64 9e-10
emb|CAB51988.1| (AL109663) hypothetical protein [Streptomyc... 60 2e-08
sp|P73376|Y50L_SYNY3 YCF50-LIKE PROTEIN >gi|1652485|dbj|BAA... 52 3e-06
emb|CAB08646| (Z95388) hypothetical protein Rv2147c [Mycoba... 48 4e-05
emb|CAA83229| (Z31012) Neurofilament protein, high molecula... 41 0.007
sp|P19246|NFH_MOUSE NEUROFILAMENT TRIPLET H PROTEIN (200 KD... 41 0.007
pir||A43778 neurofilament triplet H protein - mouse >gi|200... 41 0.007
emb|CAA75618| (Y15422) hypothetical protein [Lactococcus lactis subsp. cremoris]
Length = 196
Score = 338 bits (858), Expect = 2e-92
Identities = 167/196 (85%), Positives = 172/196 (87%)
Query: 1 MAFKDWMNNLRDYFVEDDEEFNEPARPVQESRPTVASTPKPKVEERKAQPEYQTRRPAQS 60
MAFKDWMNNLRDYFVEDDEEFNEP RPVQESRPTVASTPKPKVEERK Q +YQ+RRPAQ+
Sbjct: 1 MAFKDWMNNLRDYFVEDDEEFNEPTRPVQESRPTVASTPKPKVEERKVQADYQSRRPAQT 60
Query: 61 TSKAQTQTAAPKRAGSTFTKPMPEKIXXXXXXXXXXXXXXXXXXIAIKEPRAYADIMESA 120
T K QTQTAAPKR+ STF+KPMPEKI IAIKEPRAYADIMESA
Sbjct: 61 TPKPQTQTAAPKRSASTFSKPMPEKIVQQQTVSQAQSLAATVSTIAIKEPRAYADIMESA 120
Query: 121 RIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPANITVDAAK 180
RIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPANITVDAAK
Sbjct: 121 RIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPANITVDAAK 180
Query: 181 EMSILAGQNFESYDIY 196
EMSILAGQNFESYDIY
Sbjct: 181 EMSILAGQNFESYDIY 196
gi|4009494 (AF068904) YlmF [Staphylococcus aureus]
Length = 184
Score = 72.2 bits (174), Expect = 3e-12
Identities = 50/176 (28%), Positives = 78/176 (43%), Gaps = 8/176 (4%)
Query: 1 MAFKDWMNNLRDYFVEDDEEFNEPARPVQESRPTVASTPKPKVEERKAQPEYQTRRPAQS 60
MA KD + +FV DDEE E V + + V P + ++ + P +S
Sbjct: 1 MALKDLFSG---FFVIDDEEEVE----VPDKQQQVNEAPAKEQSQQTTKQNAIKSVPQKS 53
Query: 61 TSKAQTQTAAPKRAGSTFTKPMPEKIXXXXXXXXXXXXXXXXXXIAIKEPRAYADIMESA 120
S+ T + S ++K + + + EPR ++D + A
Sbjct: 54 ASRYTTTSEERNNRMSNYSKNNSRNVVTMNNATPNNASQESSK-MCLFEPRVFSDTQDIA 112
Query: 121 RIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPANITV 176
+KN LVN + + A+R IDF++G V+ + GDIQ VG IFL TP N+ V
Sbjct: 113 DELKNRRATLVNLQRIDKVSAKRIIDFLSGTVYAIGGDIQRVGTDIFLCTPDNVEV 168
emb|CAB13413| (Z99112) similar to hypothetical proteins [Bacillus subtilis]
Length = 149
Score = 66.3 bits (159), Expect = 2e-10
Identities = 30/72 (41%), Positives = 45/72 (61%)
Query: 105 IAIKEPRAYADIMESARIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGG 164
+ + EPR YA+ E A +KN +VN + + QA+R +DF++G V+ + GDIQ +G
Sbjct: 62 VVLSEPRVYAEAQEIADHLKNRRADVVNLQRIQHDQAKRIVDFLSGTVYAIGGDIQRIGS 121
Query: 165 QIFLMTPANITV 176
IFL TP N+ V
Sbjct: 122 DIFLCTPDNVDV 133
gi|4009472 (AF068901) YlmF [Streptococcus pneumoniae]
Length = 179
Score = 64.0 bits (153), Expect = 9e-10
Identities = 42/177 (23%), Positives = 82/177 (45%), Gaps = 23/177 (12%)
Query: 1 MAFKDWMNNLRDYFVEDDEEFNEPARPVQESRPTVASTPKPKVEERKAQPEYQTRRPAQS 60
M+ KD + DYF ED++ + + +V S+ +P A P Q + A +
Sbjct: 1 MSLKDRFDRFIDYFTEDEDSSLPYEKRDEPVFTSVNSSQEP------ALPMNQPSQSAGT 54
Query: 61 TSKAQTQTAAPKRAGSTFTKPMPEKIXXXXXXXXXXXXXXXXXXIAIKEPRAYADIMESA 120
T+ A ++ + ++ +K+ I ++ PR Y D E
Sbjct: 55 KENNITRLHARQQELANQSQRATDKVI-----------------IDVRYPRKYEDATEIV 97
Query: 121 RIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPANITVD 177
++ E +L++F++M + QARR +D++ G L G+++ V ++L+TP N+ V+
Sbjct: 98 DLLAGNESILIDFQYMTEVQARRCLDYLDGACHVLAGNLKKVASTMYLLTPVNVIVN 154
emb|CAB51988.1| (AL109663) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 213
Score = 59.7 bits (142), Expect = 2e-08
Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 24/198 (12%)
Query: 15 VEDDEEFNEPARPVQESRPTVASTPKPKVEERKAQPEYQTRRPAQSTSKAQTQTAAP--- 71
VEDD P + P + P+P+ + R+ +P +Q+ QS + + P
Sbjct: 15 VEDDGYDGRGFDPDDDFEPEL--DPEPERDHRRHEPAHQSHGAHQSQRDEEVRVVQPPAQ 72
Query: 72 -----KRAGSTFTKPMPEKIXXXXXXXXXXXXXXXXXXIAIKE--------------PRA 112
+ A P +I + + + PR
Sbjct: 73 REPMPRAASLAAESSRPARIAPVASITQERASLEKSAPVIMPKVVSEREPYRITTLHPRT 132
Query: 113 YADIMESARIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGGQIFLMTPA 172
Y + + G V++N M D A+R +DF G+VF L G I+ V ++FL++PA
Sbjct: 133 YNEARTIGEHFREGTPVIMNLTEMDDTDAKRLVDFAAGLVFGLHGSIERVTQKVFLLSPA 192
Query: 173 NITVDAAKEMSILAGQNF 190
N+ V A + I G F
Sbjct: 193 NVDVTAEDKARIAEGGFF 210
sp|P73376|Y50L_SYNY3 YCF50-LIKE PROTEIN >gi|1652485|dbj|BAA17407| (D90905) hypothetical
protein [Synechocystis sp.]
Length = 186
Score = 52.3 bits (123), Expect = 3e-06
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 6/88 (6%)
Query: 105 IAIKEPRAYADIMESARIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGG 164
+ + EP ++ ++ + + ++ + V++N M +A+R++DF+ G F +DG + +G
Sbjct: 81 VVVVEPHSFDEMPQVIQTLRERKSVVLNLNVMDPEEAQRAVDFVAGGTFAMDGHQERIGE 140
Query: 165 QIFLMTPANITVDAAKEMSILAGQNFES 192
IFL TP + V S LAG++ ES
Sbjct: 141 SIFLFTPNCVKV------SSLAGRSQES 162
emb|CAB08646| (Z95388) hypothetical protein Rv2147c [Mycobacterium tuberculosis]
Length = 241
Score = 48.4 bits (113), Expect = 4e-05
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 105 IAIKEPRAYADIMESARIVKNGECVLVNFKFMGDAQARRSIDFMTGVVFTLDGDIQNVGG 164
I P+ Y++ ++G V+++ M +A A+R +DF G+ F L G V
Sbjct: 153 ITTLRPKDYSEARTIGERFRDGSPVIMDLVSMDNADAKRLVDFAAGLAFALRGSFDKVAT 212
Query: 165 QIFLMTPANITVDAAKEMSILAGQNFESY 193
++FL++PA++ V + +E +A F +Y
Sbjct: 213 KVFLLSPADVDV-SPEERRRIAETGFYAY 240
emb|CAA83229| (Z31012) Neurofilament protein, high molecular weight subunit
(NF-H) [Mus musculus]
Length = 1071
Score = 41.0 bits (94), Expect = 0.007
Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 5/74 (6%)
Query: 15 VEDDEEFNEPARPVQESRPTVA--STPKPKVEERKAQPEYQTRRPAQSTSKAQTQTAAPK 72
VE+++ P +ES+ A PKPKVEE+K P T +P ST++A+ + A K
Sbjct: 884 VEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETP---TEKPKDSTAEAKKEEAGEK 940
Query: 73 RAGSTFTKPMPEKI 86
+ + P K+
Sbjct: 941 KKAVASEEETPAKL 954
sp|P19246|NFH_MOUSE NEUROFILAMENT TRIPLET H PROTEIN (200 KD NEUROFILAMENT PROTEIN)
(NF-H) >gi|71550|pir||QFMSH neurofilament triplet H
protein - mouse >gi|387493 (M24496) neurofilament
largest subunit [Mus musculus]
Length = 1087
Score = 41.0 bits (94), Expect = 0.007
Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 5/74 (6%)
Query: 15 VEDDEEFNEPARPVQESRPTVA--STPKPKVEERKAQPEYQTRRPAQSTSKAQTQTAAPK 72
VE+++ P +ES+ A PKPKVEE+K P T +P ST++A+ + A K
Sbjct: 900 VEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETP---TEKPKDSTAEAKKEEAGEK 956
Query: 73 RAGSTFTKPMPEKI 86
+ + P K+
Sbjct: 957 KKAVASEEETPAKL 970
pir||A43778 neurofilament triplet H protein - mouse >gi|200022 (M35131)
neurofilament protein [Mus musculus]
>gi|226537|prf||1601423A neurofilament protein NF-H [Mus
musculus]
Length = 1072
Score = 41.0 bits (94), Expect = 0.007
Identities = 24/74 (32%), Positives = 38/74 (50%), Gaps = 5/74 (6%)
Query: 15 VEDDEEFNEPARPVQESRPTVA--STPKPKVEERKAQPEYQTRRPAQSTSKAQTQTAAPK 72
VE+++ P +ES+ A PKPKVEE+K P T +P ST++A+ + A K
Sbjct: 885 VEEEKTLPTPKTEAKESKKDEAPKEAPKPKVEEKKETP---TEKPKDSTAEAKKEEAGEK 941
Query: 73 RAGSTFTKPMPEKI 86
+ + P K+
Sbjct: 942 KKAVASEEETPAKL 955
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48686128
Number of Sequences: 457798
Number of extensions: 1769737
Number of successful extensions: 9342
Number of sequences better than 1.0e-02: 10
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9322
Number of HSP's gapped (non-prelim): 28
length of query: 196
length of database: 140,871,481
effective HSP length: 57
effective length of query: 139
effective length of database: 114,776,995
effective search space: 15954002305
effective search space used: 15954002305
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 93 (40.6 bits)