Score E
Sequences producing significant alignments: (bits) Value
sp|O05241|YUGS_BACSU HYPOTHETICAL 49.5 KD PROTEIN IN TGL-PG... 335 6e-91
sp|O07589|YHDT_BACSU HYPOTHETICAL 51.5 KD PROTEIN IN CITA-S... 324 1e-87
sp|P54428|YRKA_BACSU HYPOTHETICAL 49.0 KD PROTEIN IN BLTD-T... 324 1e-87
sp|O07585|YHDP_BACSU HYPOTHETICAL 49.9 KD PROTEIN IN CITA-S... 322 4e-87
sp|P54505|YQHB_BACSU HYPOTHETICAL 50.0 KD PROTEIN IN SODA-C... 314 7e-85
gi|4155992 (AE001560) putative [Helicobacter pylori J99] 279 3e-74
gb|AAD08525.1| (AE000647) conserved hypothetical protein [H... 277 1e-73
emb|CAB72666.1| (AL139074) putative integral membrane prote... 277 2e-73
gb|AAF11725.1|AE002051_1 (AE002051) conserved hypothetical ... 238 7e-62
sp|P74409|Y260_SYNY3 HYPOTHETICAL 49.2 KD PROTEIN SLL0260 >... 211 8e-54
gb|AAC05772.1| (AF051356) putative hemolysin [Streptococcus... 201 7e-51
gb|AAF12560.1|AE001826_29 (AE001826) hemolysin, putative [D... 187 2e-46
emb|CAB53286.1| (AL109972) putative integral membrane prote... 176 4e-43
gb|AAF12559.1|AE001826_28 (AE001826) hemolysin, putative [D... 174 1e-42
emb|CAB61655.1| (AL133213) putative integral membrane prote... 165 7e-40
emb|CAB61656.1| (AL133213) putative integral membrane prote... 149 5e-35
sp|Q50592|YI42_MYCTU HYPOTHETICAL 48.1 KD PROTEIN RV1842C >... 142 6e-33
emb|CAA15138| (AJ235273) unknown [Rickettsia prowazekii] 141 1e-32
gb|AAD35927.1|AE001751_7 (AE001751) hemolysin-related prote... 140 2e-32
sp|O05832|YN66_MYCTU HYPOTHETICAL 47.2 KD PROTEIN RV2366C >... 136 4e-31
gi|2688091 (AE001130) hemolysin, putative [Borrelia burgdor... 131 2e-29
gi|2687942 (AE001119) hemolysin (tlyC) [Borrelia burgdorferi] 131 2e-29
sp|Q57017|YFJD_HAEIN HYPOTHETICAL PROTEIN HI0107 129 5e-29
gi|2984334 (AE000774) hemolysin homolog protein [Aquifex ae... 129 5e-29
sp|P39319|YTFL_ECOLI HYPOTHETICAL 49.8 KD PROTEIN IN CYSQ-M... 129 5e-29
sp|Q50593|YI41_MYCTU HYPOTHETICAL 36.7 KD PROTEIN RV1841C >... 127 2e-28
gi|3322947 (AE001239) hemolysin (tlyC) [Treponema pallidum] 126 4e-28
sp|P44717|YTFL_HAEIN HYPOTHETICAL PROTEIN HI0452 >gi|107440... 125 5e-28
emb|CAB66428.1| (AL136534) putative membrane protein (fragm... 125 9e-28
pir||H64142 hypothetical protein HI0107 - Haemophilus influ... 125 9e-28
gb|AAD18650| (AE001636) CBS Domains (Hemolysin homolog) [Ch... 123 3e-27
gi|2982841 (AE000673) hemolysin [Aquifex aeolicus] 123 3e-27
gb|AAF30477.1|AE002107_1 (AE002107) hemolysin [Ureaplasma u... 122 8e-27
emb|CAB53285.1| (AL109972) putative integral membrane prote... 119 4e-26
sp|P74078|YC54_SYNY3 HYPOTHETICAL 38.3 KD PROTEIN SLL1254 >... 119 4e-26
gb|AAC68020.1| (AE001316) (CBS Domain) [Chlamydia trachomatis] 117 2e-25
sp|P77392|YBEX_ECOLI HYPOTHETICAL 33.3 KD PROTEIN IN CUTE-A... 116 3e-25
sp|P37908|YFJD_ECOLI HYPOTHETICAL 46.4 KD PROTEIN IN FFH-GR... 114 1e-24
sp|Q54318|HLYC_TREHY HEMOLYSIN C >gi|511148|emb|CAA51657| (... 114 1e-24
gi|4191604 (AF116773) magnesium efflux protein CorC [Salmon... 113 3e-24
sp|Q57368|YBEX_HAEIN HYPOTHETICAL PROTEIN HI0301 >gi|107419... 111 9e-24
gi|3322283 (AE001188) hemolysin, putative [Treponema pallidum] 111 1e-23
sp|O05961|Y740_RICPR HYPOTHETICAL PROTEIN RP740 >gi|2073494... 110 3e-23
gi|3639065 (AF085347) integral membrane protein CorC [Salmo... 109 3e-23
dbj|BAA16497| (D90888) similar to [SwissProt Accession Numb... 109 4e-23
dbj|BAA12353| (D84432) YrkA [Bacillus subtilis] 109 6e-23
sp|Q49399|Y146_MYCGE HYPOTHETICAL PROTEIN MG146 >gi|1361538... 107 2e-22
dbj|BAA35309| (D90705) Hemolysin (tlyC) homolog [Escherichi... 107 2e-22
gb|AAC62436.1| (U97482) hemolysin [Rickettsia typhi] 106 3e-22
gb|AAD18537| (AE001623) CBS Domain protein (Hemolysin Homol... 100 4e-20
sp|P75586|Y146_MYCPN HYPOTHETICAL PROTEIN MG146 HOMOLOG >gi... 96 7e-19
emb|CAA10144| (AJ012716) hypothetical protein [Erwinia chry... 92 8e-18
sp|P76389|YEGH_ECOLI HYPOTHETICAL 59.5 KD PROTEIN IN WZA-AS... 89 5e-17
gi|1788377 (AE000296) putative transport protein [Escherich... 89 5e-17
dbj|BAA15916| (D90844) ORF_ID:o355#2; similar to [SwissProt... 89 5e-17
sp|Q48445|YC19_KLEPN HYPOTHETICAL PROTEIN IN CPS REGION (OR... 87 4e-16
gb|AAC67849.1| (AE001298) Hypothetical protein containing C... 66 5e-10
gb|AAD15464.1| (AC006067) hypothetical protein [Arabidopsis... 65 1e-09
sp|P76262|YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN SDAA-M... 62 7e-09
gi|1788966 (AE000347) putative transport protein [Escherich... 61 2e-08
emb|CAA20583.1| (AL031394) putative protein [Arabidopsis th... 61 3e-08
gb|AAD31439.1|AF130857_3 (AF130857) CorB [Salmonella typhim... 59 8e-08
gb|AAC67850.1| (AE001298) hypothetical protein [Chlamydia t... 58 1e-07
gi|1788965 (AE000347) orf, hypothetical protein [Escherichi... 58 2e-07
gb|AAD18538| (AE001623) CT257 hypothetical protein [Chlamyd... 54 2e-06
gb|AAF33142.1|AF196836_1 (AF196836) putative hemolysin [Can... 52 1e-05
gb|AAD31438.1|AF130857_2 (AF130857) CorF [Salmonella typhim... 50 4e-05
gi|3323257 (AE001262) hemolysin, putative [Treponema pallidum] 50 4e-05
gi|1109915 (U41548) weak similarity to hemolysins [Caenorha... 47 3e-04
pir||S72589 B1937_F1_22 protein - Mycobacterium leprae >gi|... 47 3e-04
sp|Q57837|Y392_METJA HYPOTHETICAL PROTEIN MJ0392 >gi|212800... 46 6e-04
ref|NP_014581.1|AMI3| Ami3p >gi|2132836|pir||S61717 probabl... 44 0.002
gi|3322284 (AE001188) hemolysin, putative [Treponema pallidum] 42 0.008
sp|O05241|YUGS_BACSU HYPOTHETICAL 49.5 KD PROTEIN IN TGL-PGI INTERGENIC REGION
>gi|1934796|emb|CAB07925| (Z93935) unknown [Bacillus
subtilis] >gi|2635626|emb|CAB15119| (Z99120) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 434
Score = 335 bits (849), Expect = 6e-91
Identities = 180/430 (41%), Positives = 268/430 (61%), Gaps = 6/430 (1%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
+IL L I ++I +TA FVAAEF++VKIR S++ L + + RA A I+++LD YLSA
Sbjct: 7 LILQLIAIFVLIGITAVFVAAEFAIVKIRGSKINQLIESGDSRALAAHKIISNLDEYLSA 66
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGEL 120
CQLGIT+T+L +GW+GE T L PL + TF+HVV+GEL
Sbjct: 67 CQLGITITALGLGWLGEPTFERFLHPLFTMTGIPEPFNHIVTFVVAFIIVTFLHVVMGEL 126
Query: 121 IPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSE 180
PK++SI K E V L +A PL +FYK+TYPF+ LN SAS + KLF E + SE
Sbjct: 127 APKTVSIQKAEAVSLWIAKPLIWFYKITYPFIKALNGSASFLVKLFGFHSVKEHQVVISE 186
Query: 181 EELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKF 240
EEL LI ++S+ KGEIN+ E+ Y+N +FEFD+ +A++IM+ R ++ I ++ S+EEA+
Sbjct: 187 EELRLILSESYEKGEINQSEFRYVNKIFEFDNRVAREIMIPRTEIAVISLEQSLEEAIHH 246
Query: 241 AIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLL 300
I + +TR+P+I KD ILG + +++ K Y ++ +IM+ I I++IPV+ LL
Sbjct: 247 IINERYTRYPVIKDDKDHILGIINSKDMFKAYFLGQPIKLNQIMRPVIRVIESIPVQQLL 306
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDH-EKELVIKLSPTTYQVD 359
MQKE H AIL+DEYGGT+GLVT+EDI+EE+VG+I+DE D E ++K Y +D
Sbjct: 307 IRMQKERIHMAILVDEYGGTAGLVTVEDIIEEIVGEIRDEYDQDETPHILKKGEHHYVMD 366
Query: 360 GKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMDK 419
GK L+ E +L +I + +N TI+G++ L Q L+ G + + I++ +
Sbjct: 367 GKALIDEVNDLLDIAI-ENEEIDTIAGWL----LTQKMELKAGDVIHAEGCEFKILDAED 421
Query: 420 ITPHILEVKR 429
+E+K+
Sbjct: 422 HHIRFVEIKK 431
sp|O07589|YHDT_BACSU HYPOTHETICAL 51.5 KD PROTEIN IN CITA-SSPB INTERGENIC REGION
>gi|2226215|emb|CAA74504.1| (Y14082) hypothetical
protein [Bacillus subtilis] >gi|2633294|emb|CAB12798|
(Z99109) similar to hemolysin [Bacillus subtilis]
Length = 461
Score = 324 bits (821), Expect = 1e-87
Identities = 174/421 (41%), Positives = 261/421 (61%), Gaps = 12/421 (2%)
Query: 4 NLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQL 63
+L +I ++I LTAFFVA+EF++V++R+SR++ L E NKRA LA ++ LD YLSA QL
Sbjct: 6 SLILIGVLIALTAFFVASEFAIVRVRRSRIDQLITEGNKRAILARRVITDLDEYLSASQL 65
Query: 64 GITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPK 123
GITLTS+ +G +GE +L PL + TF+HVV+GEL PK
Sbjct: 66 GITLTSIGLGVLGEPAFERLLHPLFEPLGLPDSVSHAVSFAVAYGLITFLHVVVGELAPK 125
Query: 124 SLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEEL 183
+++I K E + L +A PL FY L +PF+W+LN SA + +F L A+E D HSEEEL
Sbjct: 126 TVAIQKAEQLTLLIAGPLRLFYLLLFPFIWILNGSARLLCGMFGLKPASEHDGSHSEEEL 185
Query: 184 ILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIK 243
++ ++S GEIN EY+Y+N +FEFD+ IAK+IM+ R +M + ++++ E L+ +K
Sbjct: 186 RMLLSESLKNGEINPSEYKYVNKIFEFDNRIAKEIMIPRKEMAAVSTEMTMAEMLEVMLK 245
Query: 244 KGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPII-----FIDTIPVKL 298
+ +TR+P+ KD +LG V ++L + L +E K+ P + I+TIPV
Sbjct: 246 EKYTRWPVTDGDKDSVLGLVNTKHLFSDLLFMTEEERMKMTIHPYVRPVIEVIETIPVHD 305
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDE-EDHEKELVIKLSPTTYQ 357
LL +MQ+E H AIL DEYGGTSGLVT EDILEE+VG+I+DE ++ E+ L+ KL Y
Sbjct: 306 LLIKMQRERIHMAILSDEYGGTSGLVTTEDILEEIVGEIRDEFDEDEQPLIQKLGDGHYV 365
Query: 358 VDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEM 417
+DGK+ + + L + ++ TI G I L++N +E G++ + I +++M
Sbjct: 366 MDGKVRIDQVNSLLGASIQED--VDTIGGLI----LKENIDIEAGESIRIGSYTIKVLKM 419
Query: 418 D 418
D
Sbjct: 420 D 420
sp|P54428|YRKA_BACSU HYPOTHETICAL 49.0 KD PROTEIN IN BLTD-TRKA INTERGENIC REGION
>gi|1934660 (U93876) hypothetical protein YrkA [Bacillus
subtilis] >gi|2635106|emb|CAB14602| (Z99117) similar to
hemolysin-like [Bacillus subtilis]
Length = 434
Score = 324 bits (821), Expect = 1e-87
Identities = 180/434 (41%), Positives = 262/434 (59%), Gaps = 13/434 (2%)
Query: 3 LNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQ 62
+NL I L+I LTAFFVA EF++VKIR S+++ L E K A A ++ HLD YLSACQ
Sbjct: 4 INLIIFTLLIVLTAFFVATEFAIVKIRSSKIDQLILEGKKGAISAKKVITHLDEYLSACQ 63
Query: 63 LGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIP 122
LGIT+T+L IGWVGEST IL PL ++ TF+HVV+GEL P
Sbjct: 64 LGITVTALGIGWVGESTFEVILHPLFAHFHVSETVSHVLILVIAFVMATFLHVVVGELAP 123
Query: 123 KSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEE 182
K+L+I K E + L A P+ +FY++ +PF+W LN SA I LF L A+E + HSEEE
Sbjct: 124 KTLAIQKAETITLLTAKPIIWFYRILFPFIWFLNGSARFIVGLFGLKPASEHELAHSEEE 183
Query: 183 LILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAI 242
L ++ ++S+ GEIN+ E +Y+NN+FEFD+ IAK+IM+ R ++ I + S E +K
Sbjct: 184 LRILLSESYKSGEINQNELKYVNNIFEFDERIAKEIMIPRREIVAISSEDSYETIVKIIK 243
Query: 243 KKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQ-----EPII-FIDTIPV 296
+ +TR+P++ KD I+G++ + + Y+ Q+IK+ + P+I I+++P+
Sbjct: 244 TESYTRYPVLNGDKDSIIGFINAKEFLSAYIDT-DQKIKEDFKLENHINPVIHVIESVPI 302
Query: 297 KLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED-HEKELVIKLSPTT 355
+L +MQKE H AIL+DEYGGTSGLVT EDILEE+VG+I+DE D E + K++
Sbjct: 303 HDVLVKMQKERTHIAILVDEYGGTSGLVTAEDILEEIVGEIRDEFDKDEVPNIRKVNDNH 362
Query: 356 YQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITII 415
Y +D K+L+ + +L LA + + TI G+ + Q VG E D +
Sbjct: 363 YILDSKVLIEDVNDLLGTTLASDEVD-TIGGWF----MTQQIDAAVGSVIEADGYIFKVH 417
Query: 416 EMDKITPHILEVKR 429
E + LE+ R
Sbjct: 418 ETVGRHINYLEIVR 431
sp|O07585|YHDP_BACSU HYPOTHETICAL 49.9 KD PROTEIN IN CITA-SSPB INTERGENIC REGION
>gi|2226211|emb|CAA74500.1| (Y14082) hypothetical
protein [Bacillus subtilis] >gi|2633290|emb|CAB12794|
(Z99109) similar to hemolysin [Bacillus subtilis]
Length = 444
Score = 322 bits (816), Expect = 4e-87
Identities = 177/429 (41%), Positives = 269/429 (62%), Gaps = 11/429 (2%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
I+NL ++ ++I LTAFFVA+EF++++IR SR++ L E NK A + HLD YLSAC
Sbjct: 3 IVNLILVAVLIALTAFFVASEFAIIRIRGSRIDQLIAEGNKAAIAVKKVTTHLDEYLSAC 62
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
QLGITLTS+ +G +GEST+ +L PL + TF+HVV+GEL
Sbjct: 63 QLGITLTSIGLGVLGESTIERLLHPLFVQMNVPGSLSHVISFIFAYAIITFLHVVVGELA 122
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK+++I K E V + A PL +FY++ +PF+WLLN SA + K F L +E + HSEE
Sbjct: 123 PKTVAIQKAEAVSMLFAKPLIWFYRIAFPFIWLLNNSARLLTKAFGLETVSENELAHSEE 182
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
EL +I ++S+ GEIN+ E++Y+N +FEFDD +AK+IM+ R ++ ++P D+ I E +
Sbjct: 183 ELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEIVSLPHDIKISEMMDII 242
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQ--EPII-FIDTIPVKL 298
+ +TR+P+ KD+I+G + ++ ++ ++ I Q PII I++ P++
Sbjct: 243 QIEKYTRYPVEEGDKDNIIGVINIKEVLTACISGEVSVDSTISQFVNPIIHVIESAPIQD 302
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED-HEKELVIKLSPTTYQ 357
LL +MQKE H AIL DEYGGT+GLVT+EDI+EE+VG+I+DE D E + K+ Y
Sbjct: 303 LLVKMQKERVHMAILSDEYGGTAGLVTVEDIIEEIVGEIRDEFDIDEISEIRKIGEGHYI 362
Query: 358 VDGKLLLSEFEELFNIDLAQNNLSKTISG-FIT-NYSLEQNEP-LEVGQTF---EFDNLK 411
+DGK+L+ + +L I L +N TI G F+T Y +E+++ +E G F E D
Sbjct: 363 LDGKVLIDQVNDLLGIHL-ENEEVDTIGGWFLTQKYDVEKDDSIIEEGCEFIINEIDGHH 421
Query: 412 ITIIEMDKI 420
+ IE+ K+
Sbjct: 422 VAYIEVKKL 430
sp|P54505|YQHB_BACSU HYPOTHETICAL 50.0 KD PROTEIN IN SODA-COMGA INTERGENIC REGION
>gi|1303875|dbj|BAA12531| (D84432) YqhB [Bacillus
subtilis] >gi|2634909|emb|CAB14406| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 442
Score = 314 bits (797), Expect = 7e-85
Identities = 169/433 (39%), Positives = 264/433 (60%), Gaps = 11/433 (2%)
Query: 3 LNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQ 62
+NL + ++I LT FFVA EFS+VK+R+S+++ L + K AK A +++ HLD YLSACQ
Sbjct: 13 INLLAVAILILLTGFFVAVEFSIVKVRRSKIDQLVAKGKKGAKAAKHVITHLDEYLSACQ 72
Query: 63 LGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIP 122
LGIT+ +L +GW+GE T+ ++L PL T+++VVIGEL P
Sbjct: 73 LGITVAALGLGWLGEPTVQTLLRPLFHKAGLNESLTHLLSLVIAFLVVTYLNVVIGELAP 132
Query: 123 KSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEE 182
KS +I K E + L A PL +FYK+ +PF+WLLN SA I +F L A+E + ++EEE
Sbjct: 133 KSFAIQKAESITLLFAKPLIWFYKIMFPFIWLLNHSARLITGVFGLKPASEHELAYTEEE 192
Query: 183 LILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAI 242
L ++ +S+ GEI + E +Y+NN+F FD +AK+IMV R +M ++ +D L+ +
Sbjct: 193 LRVLLAESYKSGEIRKSELKYMNNIFTFDKRMAKEIMVPRNEMVSLSLDEDSISNLQETV 252
Query: 243 KK-GHTRFPIIAKTKDDILGYVTLQNLIKEYLT----APGQEIKKIMQEPIIFIDTIPVK 297
K+ +TR+P++ + KD+++G + ++ ++ LT +I+ +Q I I+TIP+
Sbjct: 253 KQTKYTRYPVVREDKDNVIGVINMKEVLFSMLTKDFSIKKHQIEPFVQPVIHVIETIPIY 312
Query: 298 LLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED-HEKELVIKLSPTTY 356
LL +MQKE H AIL+DEYGGTSGLVT+EDI+EE+VG+I+DE D E + +L Y
Sbjct: 313 KLLLKMQKERTHMAILIDEYGGTSGLVTVEDIIEEIVGEIRDEFDADEVPHIRELGKDHY 372
Query: 357 QVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIE 416
++ KLL+S+ L DL++ + T+ G+ L QN E E+D + +
Sbjct: 373 LLNAKLLISDVNSLLGTDLSEAEVD-TLGGWF----LTQNIDAEPESAIEYDGYSFKVKD 427
Query: 417 MDKITPHILEVKR 429
++ +EVK+
Sbjct: 428 INSHHILFIEVKK 440
gi|4155992 (AE001560) putative [Helicobacter pylori J99]
Length = 441
Score = 279 bits (706), Expect = 3e-74
Identities = 161/420 (38%), Positives = 247/420 (58%), Gaps = 7/420 (1%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
IL L + L++ L AFFV +EF+LVK+RK+RLE L K N AKLAL + LD+YLSA
Sbjct: 7 ILMLMVAFLLVLLNAFFVLSEFALVKVRKTRLEELVKIGNSNAKLALEMSQRLDTYLSAT 66
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXX--XXXXXXXXXXXXXXXTFVHVVIGE 119
QLGITL+SLA+GWVGE + +LA L + TF+HVV+GE
Sbjct: 67 QLGITLSSLALGWVGEPAIAKLLAALFESMDLRENPIFIHSMSVVIAFLSITFLHVVLGE 126
Query: 120 LIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHS 179
++PKSL+I K+E L A PLH F+ + YP V L + A K ++ E + +HS
Sbjct: 127 IVPKSLAIAKSEKATLFAARPLHVFWVVFYPVVRLFDVIAHFFLKKMGVN-PKEHEGMHS 185
Query: 180 EEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALK 239
EEEL +I +S +G I+ E E + N +F D AK+IM R DM + + S EE +
Sbjct: 186 EEELKIIVGESLREGIIDSVEGEIIKNAVDFSDTSAKEIMTPRKDMVCLDEENSYEENID 245
Query: 240 FAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPG-QEIKKIMQEPIIFIDTIPVKL 298
+K TR+P +KD+I+G V +++L+ + P + K+I+++ II ++ +
Sbjct: 246 IVLKSHFTRYPYCKGSKDNIIGMVHIRDLLSRSIFTPKMHDFKQIVRKMIIVPESASISQ 305
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQV 358
+L +M+KE H A+++DEYGGT+GL+T+EDI+EE++G+I DE D ++E V KL +++
Sbjct: 306 ILIKMKKEQIHTALVIDEYGGTAGLLTMEDIIEEIMGEISDEYDLKQEGVNKLEEGVFEL 365
Query: 359 DGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMD 418
+G L L EE+ +I + T+ G++ +SL + P+E G T ++ +D
Sbjct: 366 EGMLDLESVEEVLHIQFDKECEQVTLGGYV--FSLLERMPIE-GDTIVSHGYAFEVLSVD 422
gb|AAD08525.1| (AE000647) conserved hypothetical protein [Helicobacter pylori
26695]
Length = 449
Score = 277 bits (702), Expect = 1e-73
Identities = 160/420 (38%), Positives = 245/420 (58%), Gaps = 7/420 (1%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
IL L + L++ L AFFV +EF+LVK+RK+RLE L K N AKLAL + LD+YLSA
Sbjct: 15 ILMLMVAFLLVLLNAFFVLSEFALVKVRKTRLEELVKIGNSNAKLALKMSQRLDTYLSAT 74
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXX--XXXXXXXXXXXXXXXTFVHVVIGE 119
QLGITL+SLA+GWVGE + +LA L + TF+HVV+GE
Sbjct: 75 QLGITLSSLALGWVGEPAIAKLLAALFESMDLRENPIFIHSMSVVIAFLSITFLHVVLGE 134
Query: 120 LIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHS 179
++PKSL+I K+E L A PLH F+ + YP V L + A K ++ E D HS
Sbjct: 135 IVPKSLAIAKSEKATLFAARPLHVFWVVFYPVVRLFDVIAHFFLKKMGIN-PKEHDGTHS 193
Query: 180 EEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALK 239
EEEL +I +S +G I+ E E + N +F D AK+IM R DM + + S EE +
Sbjct: 194 EEELKIIVGESLREGIIDSVEGEIIKNAXDFSDTSAKEIMTPRKDMVCLDEENSYEENID 253
Query: 240 FAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPG-QEIKKIMQEPIIFIDTIPVKL 298
+K TR+P +KD+I+G V +++L+ + P + +I+++ II ++ +
Sbjct: 254 IVLKGHFTRYPYCKGSKDNIIGMVHIRDLLSRSIFTPKMHDFNQIVRKMIIVPESASISQ 313
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQV 358
+L +M+KE H A+++DEYGGT+GL+T+EDI+EE++G+I DE D ++E + KL +++
Sbjct: 314 ILIKMKKEQIHTALVIDEYGGTAGLLTMEDIIEEIMGEISDEYDLKQEGINKLEEGVFEL 373
Query: 359 DGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMD 418
+G L L EE +I+ + T+ G++ +SL + P+E G T ++ +D
Sbjct: 374 EGMLDLESVEEALHIEFDKECEQVTLGGYV--FSLLERMPME-GDTIVSHGYSFEVLSVD 430
emb|CAB72666.1| (AL139074) putative integral membrane protein with haemolysin
domain [Campylobacter jejuni]
Length = 452
Score = 277 bits (700), Expect = 2e-73
Identities = 146/389 (37%), Positives = 233/389 (59%), Gaps = 2/389 (0%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
IL + + + ++FL FFV +EFS+VK+R+S+LE + KE AK AL + + LD+YLSAC
Sbjct: 23 ILMVVVALALVFLNGFFVLSEFSIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSAC 82
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
QLGITL+SLA+GW+GE + +L L + T +HVV+GEL+
Sbjct: 83 QLGITLSSLALGWIGEPAIAKMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELV 142
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PKS++I + VL +A PLH+F+ L P + + + A+ KLF + A E + HSEE
Sbjct: 143 PKSIAIAVADKAVLFIARPLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEE 202
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
E+ +IA++S G ++E E E + N +F D +AK+IM R DM + S EE ++
Sbjct: 203 EIKIIASESQKGGVLDEFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQII 262
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLS 301
+ HTRFP I +KD ILG + ++++I+ L Q + ++ I+ + I + +L
Sbjct: 263 CEHKHTRFPYIDGSKDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLV 322
Query: 302 EMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGK 361
M KE H A+++DEYGGT+G++T+EDI+EE++G+I+ E HE++ KL+ Y+ G+
Sbjct: 323 MMNKERSHTALVVDEYGGTAGILTMEDIMEEIIGEIKSE--HEEDSYKKLAENIYEFQGR 380
Query: 362 LLLSEFEELFNIDLAQNNLSKTISGFITN 390
+ EE+ I+ ++ TI G++ N
Sbjct: 381 CDIETVEEMLVINYDEDLEQVTIGGYVFN 409
gb|AAF11725.1|AE002051_1 (AE002051) conserved hypothetical protein [Deinococcus radiodurans]
Length = 446
Score = 238 bits (601), Expect = 7e-62
Identities = 139/421 (33%), Positives = 233/421 (55%), Gaps = 7/421 (1%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
I LF + ++ + FFVAAEFSLV +R++R++ L +E N A+ A + +LD Y++A
Sbjct: 4 IFGLFAMFFLVLMNGFFVAAEFSLVSVRRTRIDQLAEEGNATAQAAQGALQNLDLYIAAT 63
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
QLGIT+ SLAIG+V E + +L PLL T +H+V GEL
Sbjct: 64 QLGITMASLAIGFVAEPAIEHLLEPLLHQTDLSESSRKAIAFGVAFAISTTLHIVFGELA 123
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PKS ++ + E VVL + PL F + + LNA + + +LF L T +SEE
Sbjct: 124 PKSWALQRPEQVVLMITRPLLAFAGVFKWAIRGLNALGNGVVRLFGLKAVTGHHTAYSEE 183
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
E+ +I + S +G + + E E + NVF+ D +++M R+DM T+ + + L+
Sbjct: 184 EIRMIVSASSQEGVLEDSEKELVYNVFDLSDTTVREVMRPRVDMVTVDSALPLRRLLELN 243
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFI-DTIPVKLLL 300
+ G++R P+ T D+I+G + ++++ I IM+ P+ F+ + + +K LL
Sbjct: 244 DEHGYSRVPVYQDTGDNIVGIAHIGDVLRHLGELDHLTIADIMR-PVFFVPEAMKIKDLL 302
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEE-DHEKELVIKLSPTTYQVD 359
++M+ + H +I++DE+GGT GLVT+ED +EE+VG+I DE + E++ +I ++ Y +D
Sbjct: 303 AKMRAKKSHMSIVVDEFGGTMGLVTLEDAIEEIVGEIYDETVEEEEQPIIVIAEGIYLMD 362
Query: 360 GKLLLSEFEELFNIDLAQNNLS-KTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMD 418
L + E EE +L T++GF+T++ + EVGQ+F T+ E D
Sbjct: 363 ASLTVHEVEERLGSNLEDGEAEYDTLAGFMTSHF---GDIPEVGQSFVHGGWSFTVEEAD 419
Query: 419 K 419
+
Sbjct: 420 Q 420
sp|P74409|Y260_SYNY3 HYPOTHETICAL 49.2 KD PROTEIN SLL0260 >gi|1653594|dbj|BAA18507|
(D90914) hemolysin [Synechocystis sp.]
Length = 448
Score = 211 bits (532), Expect = 8e-54
Identities = 125/423 (29%), Positives = 223/423 (52%), Gaps = 8/423 (1%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
V L LF I +++ L F +E ++V RK RLE L K N++AKLAL + +++LSA
Sbjct: 6 VELELFFIFVLVVLNGIFSGSEIAIVSARKVRLEQLAKRGNRKAKLALKLATAPNNFLSA 65
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGEL 120
Q+GITL + G VG +T+ LA L + T++ +V+GEL
Sbjct: 66 VQIGITLIGILTGAVGGATVALRLAEFLDDIPLLAPYAGPLSISLLVGFITYLSLVVGEL 125
Query: 121 IPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSE 180
+PK ++++ E + VA +H +LT P V+LL S ++ +LF ++ + E I +E
Sbjct: 126 VPKRIALSHPEHIACGVAPAMHLVAQLTAPLVYLLGVSTDAVLRLFGIT-SKEASPI-TE 183
Query: 181 EELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKF 240
EE+ ++ Q G I+E E E + VF D K +M R + + V+ EE +
Sbjct: 184 EEIRVMIEQGAQAGMIDEAEQEMVERVFRLGDRPVKTLMTPRTAIAWLDVESDWEENQQE 243
Query: 241 AIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLL 300
+ ++RFP+ + D+ LG+V +++++ + +++I+Q P+ + +L
Sbjct: 244 ILDTPYSRFPVGRDSLDECLGFVRVKDILNSQWSGQKINLEEIVQPPLFVAENTRSLHVL 303
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDG 360
+ H A++ DEYGG GLVT+ D++E +VG I ++++ ++ +I+ +Y +DG
Sbjct: 304 EMFRASGTHLALITDEYGGIEGLVTLNDLIEAIVGSIPNDDEIQEPQIIQREDGSYLLDG 363
Query: 361 KLLLSEFEELFNIDLAQNNLS---KTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEM 417
L + EF+E+F+I+ N T+ GF+ + + G F D L++ +++M
Sbjct: 364 LLPIDEFKEIFDIETLSNEEEGHYHTLGGFVIE---SLGKIPQSGDYFVSDTLRVEVVDM 420
Query: 418 DKI 420
D I
Sbjct: 421 DGI 423
gb|AAC05772.1| (AF051356) putative hemolysin [Streptococcus mutans]
Length = 445
Score = 201 bits (507), Expect = 7e-51
Identities = 127/438 (28%), Positives = 228/438 (51%), Gaps = 18/438 (4%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
+IL +++++ AFF A E +LV + ++R+E +E K+ L ++ + +++LS
Sbjct: 9 LILQFLLLLILTLCNAFFSATEMALVSLNRARVEQKAEEGEKKYIRLLKVLENPNNFLST 68
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGEL 120
Q+GITL +L G +++ L ++ T++ +V+GEL
Sbjct: 69 IQVGITLITLLSG----ASLADSLGREIAVWFGNSATARTAGSLISLAFLTYISIVLGEL 124
Query: 121 IPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSE 180
PK +++ E + + A + + K+ PFVWLL+ S + + +L ++ +++ +
Sbjct: 125 YPKRIAMNLKENLAVLSAPVIIFLGKVVSPFVWLLSVSTNLLSRLTPMTFDDADEKMTRD 184
Query: 181 EELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKF 240
E ++ N + ++ E E L VF D+L+A+++MV R D + ++ + ++
Sbjct: 185 EIEYMLTNS---EETLDADEIEMLQGVFSLDELMAREVMVPRTDAFMVDINDDSSDIIQT 241
Query: 241 AIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEI--KKIMQEPIIFIDTIPVKL 298
+ + +R P+ KD I+G + +NL+ I ++I+QEP+ +TI V
Sbjct: 242 ILNERFSRIPVYDDDKDKIIGIIHTKNLLNAGFKEGFDHINLRRILQEPLFVPETIVVND 301
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQV 358
LL+ ++ AILLDEYGG +GLVT+ED+LEE+VG+I DE D V +++ TY V
Sbjct: 302 LLTALKNTQNQMAILLDEYGGVAGLVTLEDLLEEIVGEIDDETDKTAISVREIADNTYIV 361
Query: 359 DGKLLLSEFEELFNIDLAQNNLSKTISGFI-----TNYSLEQNEPLEV---GQTFEFDNL 410
G + L++F E F DL +N+ TI+GF T S E+ E EV G+ E N
Sbjct: 362 LGTMTLNDFNEYFETDLESDNVD-TIAGFYLTGVGTIPSQEEKEHFEVESNGKHLELIND 420
Query: 411 KITIIEMDKITPHILEVK 428
K+ + K+ + EV+
Sbjct: 421 KVKDGRVTKLKILVSEVE 438
gb|AAF12560.1|AE001826_29 (AE001826) hemolysin, putative [Deinococcus radiodurans]
Length = 433
Score = 187 bits (470), Expect = 2e-46
Identities = 119/390 (30%), Positives = 205/390 (52%), Gaps = 13/390 (3%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVN---HLDSYL 58
++ L +I++M+ + A +VAAEF+ V R+SR++ + N A L+I+ LD+Y+
Sbjct: 4 LVPLLVILVMVAVNALYVAAEFATVGSRRSRVQEAAEAGNSAAGRLLHILKDPKRLDNYV 63
Query: 59 SACQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIG 118
+ACQ GITL+SL G G++ + +L P T + VV+G
Sbjct: 64 AACQTGITLSSLVAGSYGQAQLTPLLTPYFG------EAGQAVAVLVVLVLITILQVVLG 117
Query: 119 ELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIH 178
EL+PK++++ E + L P+ L P + L N +A ++ K LS IH
Sbjct: 118 ELLPKTVALRYPERLALATLVPMQLSQWLFTPLIALFNGTAFALMKGLKLSADHSHAHIH 177
Query: 179 SEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEAL 238
S EEL + +S G I+ +E + L V ++ I ++IM +R + T+PV+V + +AL
Sbjct: 178 SPEELEGLYRESAAGGLIDAEERDMLAGVLNVENRIVREIMSARTKLLTVPVNVPVADAL 237
Query: 239 KFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKL 298
+ ++RFP+ D+I+G V L+ L P + +M P+I + + V
Sbjct: 238 RSLAGSPYSRFPV--TQGDEIVGVVHLRRLYLAAQRTPLAPVSSVMVSPLIVAEVMSVPD 295
Query: 299 LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQV 358
L + +++ +H A++++EYG G+VT+ED LEE+ G++QDE D E+E I +S V
Sbjct: 296 LWTHLRESGRHSALVVNEYGTVIGMVTLEDALEEIFGELQDEFDQEEE-PITVSGGRVSV 354
Query: 359 DGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
G +LL ++ L + + T+SG +
Sbjct: 355 RGDVLLETLNSRLSLKLPTDEVD-TVSGLL 383
emb|CAB53286.1| (AL109972) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 445
Score = 176 bits (441), Expect = 4e-43
Identities = 111/391 (28%), Positives = 197/391 (49%), Gaps = 14/391 (3%)
Query: 9 VLMIFL----TAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
VL +F+ T +FVA EF+ V + L +E +K+A AL ++ L LS QLG
Sbjct: 10 VLAVFVLTAGTGYFVAQEFAYVSADRLALARQAEEGDKKAARALRVLERLSFMLSGAQLG 69
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
IT+T L +G++ E ++ ++L P+LS V T V +V+GEL PK+
Sbjct: 70 ITVTGLVVGFIAEPSVSALLRPVLSGVGIPDGAVTGISVVLAFVLATVVQMVLGELAPKN 129
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
L+I E + +A + K+ P V + + +A+ + + + E + EEL
Sbjct: 130 LAIAVPERLAKALAGSTLGYLKVVGPVVRIFDGAANRLLRGVGIEPVEELHHGATLEELG 189
Query: 185 LIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKK 244
+ +S +GE+ + L++ EF + ++MV R D + D + EA+ +
Sbjct: 190 HLIGESHEQGELPRGTAQLLDHALEFSERTLHEVMVPRADAVFVRKDATAAEAVTLIARH 249
Query: 245 GHTRFPIIAKTKDDILGYVTLQNLI-----KEYLTAPGQEIKKIMQEPIIFIDTIPVKLL 299
GH+ +P++ DD+ G + ++ L+ + T G ++ P++ DT+P+
Sbjct: 250 GHSNYPVLGDHPDDVAGVLGVRELMGLPAGQFTATTAGAAARR----PLLLPDTLPLPDA 305
Query: 300 LSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVD 359
+ M+++ FA++LDE+GG +G+VT EDI EELVGDI DE D + + + VD
Sbjct: 306 VERMREDDDEFAVVLDEHGGVAGVVTYEDIAEELVGDIADESDTVTAVAV-ADGEGWLVD 364
Query: 360 GKLLLSEFEELFNIDLAQNNLSKTISGFITN 390
L E E ++L + + +T++G + +
Sbjct: 365 AGRRLDEVAEATGVELPEEDDYETVAGLVVD 395
gb|AAF12559.1|AE001826_28 (AE001826) hemolysin, putative [Deinococcus radiodurans]
Length = 437
Score = 174 bits (437), Expect = 1e-42
Identities = 113/435 (25%), Positives = 219/435 (49%), Gaps = 14/435 (3%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNH---LDSY 57
V L + II+ ++ L FVAAEF+LV ++SRL+TL + N A+ L + + D Y
Sbjct: 5 VFLPVVIILALVVLNGLFVAAEFALVGAKRSRLQTLAEGGNGAARWLLGVFDRPTGKDGY 64
Query: 58 LSACQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVI 117
++ QLGITL S+ +G GE + L TF+HVV
Sbjct: 65 IAVAQLGITLASIGLGMYGEPAVARWLYGPFEKWGLSHDTAHTVGFVVALSSITFMHVVF 124
Query: 118 GELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEI 177
GE+IPK+L++ E + L+V + F + PFV +LN A + +L + + +
Sbjct: 125 GEMIPKALALQAPEQMSLSVNPLMRVFGLIFRPFVAVLNFLALGLMRLLRIPEPDKSATL 184
Query: 178 HSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEA 237
++ +EL ++ + G++ + + + ++N+FE ++ A+++M SR ME + V ++
Sbjct: 185 YTSKELAIVTEEVADSGQLGDVQRDLIHNIFELEERTAEELMTSRSRMEVLSVRALSQDV 244
Query: 238 LKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVK 297
+R+P+ D I+G + +++ ++ + ++ ++++ T +
Sbjct: 245 ATRIAASPRSRYPVFEDNLDHIIGVLHIKDFMRAQASGRVPDLSRLVRPLPSVAATAKAE 304
Query: 298 LLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLS-PTTY 356
LLS ++E H A++ DE+GGT G VT++D L+ D+ DEE+ I+ + +
Sbjct: 305 ELLSMFKRERVHAALVADEFGGTLGFVTMDD----LIADVMDEEEESDGFWIQENGDGSL 360
Query: 357 QVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEV-GQTFEFDNLKITII 415
+DG++ LSE + + + L ++S T++G I L Q + G T + +T+
Sbjct: 361 TLDGEVTLSELRDDYGLPLGSMDVS-TVAGLI----LAQTGTVPASGVTVHVQGVDLTVE 415
Query: 416 EMDKITPHILEVKRV 430
E+ ++ + ++R+
Sbjct: 416 EVSELKITRVRLRRI 430
emb|CAB61655.1| (AL133213) putative integral membrane protein. [Streptomyces
coelicolor A3(2)]
Length = 443
Score = 165 bits (413), Expect = 7e-40
Identities = 101/345 (29%), Positives = 175/345 (50%), Gaps = 8/345 (2%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
+L L L+I FFVAAEF LV + + E ++RA + + L LS
Sbjct: 5 LLLLAAAFLLILANGFFVAAEFGLVTVERPDAEQAAAAGDRRAHRVVESLKELSFQLSGT 64
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
QLGIT+TSL +G + E + +L + V + V +VIGEL+
Sbjct: 65 QLGITITSLVVGMLAEPALARLLDGPFTAVGVPDGAVSGVSVVVGMLLASAVQMVIGELV 124
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK+ +++K V VA P H F +L +P + LN A+ + + + A E +
Sbjct: 125 PKNWAVSKPLQVARFVAGPQHAFARLFHPVIAALNTVANRLVRTLGIEPAEELASARTPG 184
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
EL+ +A S G + + + +L A+ +M R+ + + + E+ +
Sbjct: 185 ELVSLARHSARAGALEQDTADLFVRTLSLGELTAQHVMTPRVKVSALHSSATAEDVVNLT 244
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNL----IKEYLTAPGQEIKKIMQEPIIFIDTIPVK 297
G +RFP+ + D+I+G V L++ + + L P +I + ++ +T+PV+
Sbjct: 245 RATGLSRFPVYREKIDEIVGMVHLKDALAVPVHDRLRTPA---GRIARPALLVPETLPVR 301
Query: 298 LLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED 342
LL+ ++ E + A+++DEYGGT+G+VT+EDI+EE+VG+++DE D
Sbjct: 302 PLLTRLRSE-QPIAVVVDEYGGTAGVVTLEDIVEEIVGEVRDEHD 345
emb|CAB61656.1| (AL133213) putative integral membrane protein. [Streptomyces
coelicolor A3(2)]
Length = 347
Score = 149 bits (372), Expect = 5e-35
Identities = 95/349 (27%), Positives = 174/349 (49%), Gaps = 7/349 (2%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
+L L L++ FFV AEF+LV +R+S++E L RA+ L + L ++A
Sbjct: 3 VLQLLFAALLVLANGFFVGAEFALVSVRRSQIEPL---GTTRARQVLYGLERLPQMMAAA 59
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
Q GIT+ SL +G V E T+ +L P+ ++ F H+VIGE++
Sbjct: 60 QFGITVCSLTLGAVAEPTVAHLLEPVFEWIHLPHGMIHPLGYVIALAVVVFCHLVIGEMV 119
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK+L++ E L ++ L F +L P L A A I +LF++ E + + + E
Sbjct: 120 PKNLAMAAPEKAALWLSPGLVAFARLCRPITVALGACAQGILRLFHVEPKDEVEAVFTSE 179
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
+L + + G ++ +E E L + E D+++ R + T+ V+ E +
Sbjct: 180 QLNRLVEDAGQAGLLDPEEQERLEDALELGSHPVTDVLLPRESLVTVSPSVTPGEIVALT 239
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFI-DTIPVKLLL 300
+ G++RFP IA + +GY+ +++++ L + + + + P+ + +P+ L
Sbjct: 240 ARTGYSRFP-IAADQGAFMGYLHVKDVLD--LEESDRAVPQHLWRPMTTLRPELPLDDAL 296
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVI 349
+ M++ H A + D G GLV +ED+LE LVG+++D +E+ +
Sbjct: 297 TVMRRAATHLAQVTDPSGRILGLVALEDVLELLVGEVRDPAHRNREVTL 345
sp|Q50592|YI42_MYCTU HYPOTHETICAL 48.1 KD PROTEIN RV1842C >gi|1781205|emb|CAB06112|
(Z83859) hypothetical protein Rv1842c [Mycobacterium
tuberculosis]
Length = 455
Score = 142 bits (354), Expect = 6e-33
Identities = 96/369 (26%), Positives = 177/369 (47%), Gaps = 8/369 (2%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
+ + I+ + T FVAAEFSL + +S +E + R + + L LS
Sbjct: 7 VATILAILALTAGTGVFVAAEFSLTALDRSTVEANARGGTSRDRFIQRAHHRLSFQLSGA 66
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
QLGI++T+LA G++ E + + P L V T + +V GEL+
Sbjct: 67 QLGISITTLATGYLTEPLVAELPHPGLVAVGMSDRVADGLITFFALVIVTSLSMVFGELV 126
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK L++ + +V A F L P + L N +A+ I + + A E + +
Sbjct: 127 PKYLAVARPLRTARSVVAGQVLFSLLLTPAIRLTNGAANWIVRRLGIEPAEELRSARTPQ 186
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
EL+ + S G +++ + +F L A+++M R + + D +I + + A
Sbjct: 187 ELVSLVRSSARSGALDDATAWLMRRSLQFGALTAEELMTPRSKIVALQTDDTIADLVAAA 246
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIM---QEPIIFI-DTIPVK 297
G +RFP++ D +G V ++ + + PG ++ EP+ + T+
Sbjct: 247 AASGFSRFPVVEGDLDATVGIVHVKQVFE---VPPGDRAHTLLTTVAEPVAVVPSTLDGD 303
Query: 298 LLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQ 357
++++++ A+++DEYGGT+G+VT+ED++EE+VGD++DE D V+ + ++
Sbjct: 304 AVMAQVRASALQTAMVVDEYGGTAGMVTLEDLIEEIVGDVRDEHDDATPDVV-AAGNGWR 362
Query: 358 VDGKLLLSE 366
V G L + E
Sbjct: 363 VSGLLRIDE 371
emb|CAA15138| (AJ235273) unknown [Rickettsia prowazekii]
Length = 424
Score = 141 bits (351), Expect = 1e-32
Identities = 100/433 (23%), Positives = 197/433 (45%), Gaps = 34/433 (7%)
Query: 5 LFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
+ +I++MI L+A F A E ++ ++ L+ NKRAK L ++ + + +G
Sbjct: 6 VIVIIIMISLSALFAATETAITASSPGKIHKLKIAGNKRAKTVLEVLKKKEKVIGTLLIG 65
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
+L + + + S+L + V F+ +V E++PK+
Sbjct: 66 NSLINTICTTIATTLFISLLGNNGTIVASGVMA--------------FIIIVFAEVVPKA 111
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
+++ K E + L +++ + F KL P L+ +F ++L +I EE+
Sbjct: 112 IAVAKPEQLTLKMSSTIVIFLKLFKPINIALDYITKIFCFIFRINL---NPQISGTEEVR 168
Query: 185 LIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKK 244
+ +G + + E L + + ++ +IM R ++ + +D+ E +K +
Sbjct: 169 GVIEHYHQEGGVYKSERNMLGGILDIRNMTVSEIMTHRSNIIALNIDLPYELIIKTLLSG 228
Query: 245 GHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQE----IKKIMQEPIIFIDTIPVKLLL 300
HTR P+ +D+I+G + L++L+K + I ++ P D V L
Sbjct: 229 AHTRIPLWQDNRDNIIGILNLKDLLKALYENNNDDKKVDINTLLTPPWFIPDNALVVDQL 288
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDG 360
++ + HFA ++DEYG G++T+ED++EE+VG I DE D +I+ S T + + G
Sbjct: 289 HAFRERNNHFACVVDEYGTLLGIITLEDVIEEIVGPITDEHDRLNNEIIQESNTEFIIKG 348
Query: 361 KLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEF------------D 408
+ + + +L+ + + TI+G I + EV + F F D
Sbjct: 349 TTTIRDINRELDWNLSDED-ANTIAGLIIHKIARIPNQGEVIKIFNFKIIILKKIANKID 407
Query: 409 NLKITIIEMDKIT 421
++KIT++ M + T
Sbjct: 408 SVKITVLPMTEET 420
gb|AAD35927.1|AE001751_7 (AE001751) hemolysin-related protein [Thermotoga maritima]
Length = 455
Score = 140 bits (350), Expect = 2e-32
Identities = 107/425 (25%), Positives = 207/425 (48%), Gaps = 26/425 (6%)
Query: 3 LNLFIIVLMIFLTAFFVAAEFSLVKIRKSRL-ETLEKENNKRAKLALNIVNHLDSYLSAC 61
L ++V++I+L+ FF ++E +L + K ++ E LE++ K AK + ++ + YL+
Sbjct: 13 LESLLLVILIYLSNFFSSSETALTLMSKVKIKEFLEEKEEKSAKESY--IHLFNKYLTTI 70
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
+ L +L + ++L + T + ++ GE+
Sbjct: 71 LISNNLVNLLASSISTLIFLNLLRNM----------SEEFVAVVSTLFITTILLIFGEIT 120
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK L+ + E V + + ++ P LL A I L + +E D +EE
Sbjct: 121 PKVLARSDPERVFRRSIGVIRFLTRVLDPIGRLLVKIADGIISLRHGKKVSE-DLFITEE 179
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
+++ I G I E+E + FE + K+IM R+D+ I + ++++ ++
Sbjct: 180 DIVSIVQVGGEMGVIEEEEERIIKRAFEMKQIAVKEIMTPRVDIVAIEENQTVKDLIELV 239
Query: 242 IKKGHTRFPIIAKTKDDILGYVTLQNLI-----KEYLTAPGQEIKKIMQEPIIFIDTIPV 296
+G++R P+ +T D+I+G ++++ K+ ++K IM+E + +T+ +
Sbjct: 240 EDEGYSRIPVYKETIDNIVGICYAKDVLSMLAEKDCEEVKSMKVKDIMREALYVPETMNI 299
Query: 297 KLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEK-ELVIKLSPTT 355
LL ++ H AI++DEYGGT+G+VT+EDI+EEL G+I DE D+++ + K+ T
Sbjct: 300 DELLKILKARKIHIAIVVDEYGGTAGIVTLEDIIEELFGNIMDEYDYDEISGIRKIDERT 359
Query: 356 YQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPL-EVGQTFEFDNLKITI 414
Y VDG +++ E + + +TI+G Y LE + + VG+ NL +
Sbjct: 360 YIVDGATPINDIEMELRVQFPETEY-ETIAG----YLLEHFKRIPNVGEEAVIGNLYFKV 414
Query: 415 IEMDK 419
+ + K
Sbjct: 415 LAVGK 419
sp|O05832|YN66_MYCTU HYPOTHETICAL 47.2 KD PROTEIN RV2366C >gi|2078033|emb|CAB08473|
(Z95208) hypothetical protein Rv2366c [Mycobacterium
tuberculosis]
Length = 435
Score = 136 bits (339), Expect = 4e-31
Identities = 88/283 (31%), Positives = 147/283 (51%), Gaps = 12/283 (4%)
Query: 111 TFVHVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSL 170
+FV V +G P++L + L A PL L P LL +G
Sbjct: 103 SFVVVGVG---PRTLGRQNAYSISLATALPLRLISWLLMPISRLLVL----LGNALTPGR 155
Query: 171 ATEGDEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPV 230
SE EL + + + +G + E + +VFE D A+++MV R +M I
Sbjct: 156 GFRNGPFASEIELREVVDLAQQRGVVAADERRMIESVFELGDTPAREVMVPRTEMIWIES 215
Query: 231 DVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYL--TAPGQE--IKKIMQE 286
D + +A+ A++ GH+R P+I + DDI+G V L++L+++ T G+E + ++M+
Sbjct: 216 DKTAGQAMTLAVRSGHSRIPVIGENVDDIVGVVYLKDLVEQTFCSTNGGRETTVARVMRP 275
Query: 287 PIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDH-EK 345
+ D+ P+ LL EMQ++ H A+L+DEYG +GLV+IED+LEE+VG+I DE D E
Sbjct: 276 AVFVPDSKPLDALLREMQRDRNHMALLVDEYGAIAGLVSIEDVLEEIVGEIADEYDQAET 335
Query: 346 ELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
V L ++V +L + + EL+ ++ + T+ G +
Sbjct: 336 APVEDLGDKRFRVSARLPIEDVGELYGVEFDDDLDVDTVGGLL 378
gi|2688091 (AE001130) hemolysin, putative [Borrelia burgdorferi]
Length = 412
Score = 131 bits (325), Expect = 2e-29
Identities = 89/390 (22%), Positives = 189/390 (47%), Gaps = 22/390 (5%)
Query: 2 ILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSAC 61
+L L II+L I L+A F A+E + + +++ + K + K +++ N + S
Sbjct: 1 MLELIIILLFIILSAIFSASETAYTSLSIIQIQDIRK----KGKSGISVYNLVQSPSKL- 55
Query: 62 QLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELI 121
+T++ IG + + +I+A L+ T + ++ E++
Sbjct: 56 -----ITTILIG----NNISNIVASTLT-TKFVLEKYGNSALAISTGLITIIVLIFAEIL 105
Query: 122 PKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEE 181
PK ++I E + L+ + L + P ++++N I LF + +++ + +
Sbjct: 106 PKQIAILNNEIIALSTSFFLKPLIFIFTPLIYIINKIIKKILNLFKVKTSSQMTKESIKN 165
Query: 182 ELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFA 241
L L + +K + ++ + + D + A +IM R + ++ +++ +K
Sbjct: 166 MLSLAGSLGILKNDSRI----FMQKMLDIDQVRASEIMTHRTGVFSLSSSSKLKDVIKLI 221
Query: 242 IKKGHTRFPII-AKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLL 300
++G++R PI ++++ I+G + ++LI+ + + + ++ + +K +L
Sbjct: 222 KEEGYSRIPIYKGQSREQIIGILIAKDLIEVNKKDMNKNVSQFIKPAVFVQQNKRIKDIL 281
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED--HEKELVIKLSPTTYQV 358
M+K+ K AI++DEYGG SG++TIEDI+E++ G I DE D EK L+ +++ TY +
Sbjct: 282 DIMRKKQKIMAIVIDEYGGFSGILTIEDIVEKIFGAISDEYDIKEEKPLITQINDNTYSI 341
Query: 359 DGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
G+ E EE I + + TI G++
Sbjct: 342 LGETTFDEIEEAIGISIKHKEYTNTIGGYL 371
gi|2687942 (AE001119) hemolysin (tlyC) [Borrelia burgdorferi]
Length = 259
Score = 131 bits (325), Expect = 2e-29
Identities = 75/230 (32%), Positives = 128/230 (55%), Gaps = 6/230 (2%)
Query: 200 EYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDI 259
E + N + + K+IM+ R+ + + S +E LK H+RFP+ T D+I
Sbjct: 28 ETSLIKNFNALKETVVKEIMIPRIGVIFVDYAKSKDELLKVVTSSSHSRFPVYHGTIDNI 87
Query: 260 LGYVTLQNLIKEYLTAPGQEI--KKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEY 317
+G + ++++ EI K IM++ + ++ LL E Q+ H H AI++DEY
Sbjct: 88 VGIIHTRDILLHMCKKDFYEIDLKDIMRKVMFVPESKKTDSLLKEFQENHVHIAIVVDEY 147
Query: 318 GGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQ 377
GG SGLVT+EDILEE+VGDIQDE D+E + +++L +Y D ++L+ + E N++L
Sbjct: 148 GGVSGLVTLEDILEEIVGDIQDEFDNELDEIVRLDDGSYLCDARILIEDLNEKLNLNLPN 207
Query: 378 NNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMDKITPHILEV 427
+ T+ GF+ Y L PL+ + E++NL +I M + ++++
Sbjct: 208 GDFD-TLGGFV--YDLFGRIPLK-NEKVEYNNLVFSIKNMHQRNIKVIKI 253
sp|Q57017|YFJD_HAEIN HYPOTHETICAL PROTEIN HI0107
Length = 420
Score = 129 bits (321), Expect = 5e-29
Identities = 108/418 (25%), Positives = 196/418 (46%), Gaps = 29/418 (6%)
Query: 7 IIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGIT 66
I+++ + L+A+F +E L+ + K RL L ++ NK AK A ++ D+ LS +
Sbjct: 12 ILIICLVLSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPDTLLSFILIFNN 71
Query: 67 LTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLS 126
L +++ S + +++ L TFV +V E+ PK+++
Sbjct: 72 LVNISA-----SAIATVIGMRL---------YGDAGVAIATGLLTFVMLVFSEIFPKTVA 117
Query: 127 ITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELILI 186
E V + L K+ YP VWL+N S+ ++ L L + I SEE ++
Sbjct: 118 AMHAEKVSFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLKLDMQKQVISSEELRSIV 177
Query: 187 ANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGH 246
+ + NE+ + L ++ + + + DIMV R ++ I +D ++ H
Sbjct: 178 SEAG--EATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAH 235
Query: 247 TRFPIIAKTKDD-ILGYVTLQN---LIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSE 302
R + + D+ +LG + ++ L+ E + + + E ++ P+K L+
Sbjct: 236 NRVVLYKGSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLAN 295
Query: 303 MQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDI--QDEEDHEKELVIKLSPTTYQVDG 360
+ + +++DEYG GLVT+EDILEE+VGD +KE VI+ S + +DG
Sbjct: 296 FRTNKERIGLVVDEYGDIKGLVTLEDILEEIVGDFTTSTAPSIDKE-VIQQSDGSMIIDG 354
Query: 361 KLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPL-EVGQTFEFDNLKITIIEM 417
L + ++FN +L + ++T +G I LE E + + G E D L ITI+E+
Sbjct: 355 SANLRDLNKMFNWELDTED-ARTFNGLI----LEHLEEIPDEGTICEIDGLLITILEV 407
gi|2984334 (AE000774) hemolysin homolog protein [Aquifex aeolicus]
Length = 422
Score = 129 bits (321), Expect = 5e-29
Identities = 90/417 (21%), Positives = 190/417 (44%), Gaps = 22/417 (5%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
+ + + + ++F + FF ++E + K L ++ N+ KL + +++ L +
Sbjct: 8 IYTDFLVFLFLLFASGFFSSSEVVFFSVSKPVL--MKFSGNRFFKLLMKLLSKPKELLIS 65
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGEL 120
+G L ++ I G T + + + + GE
Sbjct: 66 ILIGNELVNVLIASYGTKTFVELFGDKGALLAVAVSSTLIF--------------IFGET 111
Query: 121 IPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSE 180
IPK++ + + + L A + F+ + P +L ++ K + + E E+ +E
Sbjct: 112 IPKNVVLPIADRLALVYAPVFYLFHVVITPLRIILILPVQTLLKKMGVEIKEETFEL-TE 170
Query: 181 EELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKF 240
E+L+ + Q GE +E + V E D+++ +++M R + +P D + E ++
Sbjct: 171 EKLLSLIEQGIESGEFEIQEKSMIEKVLEMDEVLVREVMTPRPKIFALPEDKRVGEVVEE 230
Query: 241 AIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLL 300
++ H++ P+ D++ G V ++ L+ + +K+ + +I + + L
Sbjct: 231 IKRRAHSKIPLYKDVLDNVSGIVHVKELLPIQHNRE-RALKEFATDVLIIPEVTTLSNFL 289
Query: 301 SEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDG 360
E++K A+++DE+G SG+VT+ D+L+ +VG+I +E + EKE + K+S TY+V G
Sbjct: 290 REIKKYKIKLAVVIDEHGAVSGVVTLYDVLKWIVGEIPEEYEEEKE-IEKISADTYRVGG 348
Query: 361 KLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEM 417
+ + E E ++L + T+SGF+ + G F FD K + E+
Sbjct: 349 SVSIEELAEKIGLELPEEYDYDTVSGFV---MANLGRIPKKGDEFTFDGFKFIVNEV 402
sp|P39319|YTFL_ECOLI HYPOTHETICAL 49.8 KD PROTEIN IN CYSQ-MSRA INTERGENIC REGION
>gi|1361108|pir||S56443 hypothetical protein f447 -
Escherichia coli >gi|537059 (U14003) ORF_f447
[Escherichia coli] >gi|1790664 (AE000493) putative
transport protein [Escherichia coli]
Length = 447
Score = 129 bits (321), Expect = 5e-29
Identities = 85/392 (21%), Positives = 181/392 (45%), Gaps = 16/392 (4%)
Query: 4 NLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQL 63
++ +I+ +I ++AFF +E SL RK +L+ L E N A+ LN+ + + + Q+
Sbjct: 4 SILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQI 63
Query: 64 GITLTSLAIGWVGES----TMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGE 119
G+ ++ G VG++ HS+ + +S T + ++ +
Sbjct: 64 GLNAVAILGGIVGDAAFSPAFHSLFSRYMS-----AELSEQLSFILSFSLVTGMFILFAD 118
Query: 120 LIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHS 179
L PK + + E V L + P+ + + P VW N A+ I ++F L + + D +
Sbjct: 119 LTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDD--IT 176
Query: 180 EEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALK 239
+++ + + G + ++E+E + NVFE + M R ++ + +
Sbjct: 177 SDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKN 236
Query: 240 FAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQ--EPIIFIDTIPVK 297
+ H++F + + D I+GYV ++L+ L + +Q +I DT+ +
Sbjct: 237 KVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLALNSGVQIRNTLIVPDTLTLS 296
Query: 298 LLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQ 357
L + + FA++++EY G++T+ D++ L+GD+ + E+ ++ ++
Sbjct: 297 EALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQ--IVARDENSWL 354
Query: 358 VDGKLLLSEFEELFNID-LAQNNLSKTISGFI 388
+DG + + + +ID Q+ +TI GF+
Sbjct: 355 IDGGTPIDDVMRVLDIDEFPQSGNYETIGGFM 386
sp|Q50593|YI41_MYCTU HYPOTHETICAL 36.7 KD PROTEIN RV1841C >gi|1781206|emb|CAB06113|
(Z83859) hypothetical protein Rv1841c [Mycobacterium
tuberculosis]
Length = 345
Score = 127 bits (315), Expect = 2e-28
Identities = 89/351 (25%), Positives = 169/351 (47%), Gaps = 24/351 (6%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
V+ + + +L+I AFFV AEF+L+ R+ RLE L ++ A + L + L+
Sbjct: 3 VLSAVLLALLLIGANAFFVGAEFALISARRDRLEALAEQGKATAVTVIRAGEQLPAMLTG 62
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGEL 120
QLG+T++S+ +G VGE + LL +HV++GE+
Sbjct: 63 AQLGVTVSSILLGRVGEPA----VVKLLQLSFGLSGVPPALLHTLSLAIVVALHVLLGEM 118
Query: 121 IPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSE 180
+PK++++ E + + P + +L PF+ N A++I +L + E D S
Sbjct: 119 VPKNIALAGPERTAMLLVPPYLVYVRLARPFIAFYNNCANAILRLVGVQPKDELDIAVST 178
Query: 181 EELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDV-------- 232
EL + +S +G ++ +E+ L + D+ V +++ + V
Sbjct: 179 AELSEMIAESLSEGLLDHEEHTRLTRALRIRTRLVADVAVPLVNIRAVQVSAVGSGPTIG 238
Query: 233 SIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTA---PGQEIKKIMQEPII 289
+E+AL + G++RFP++ + +GY+ IK+ LT P I + P+
Sbjct: 239 GVEQAL---AQTGYSRFPVVDR-GGRFIGYLH----IKDVLTLGDNPQTVIDLAVVRPLP 290
Query: 290 FI-DTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQD 339
+ ++P+ LS M++ + H A++ + G G+V +ED++E+LVG ++D
Sbjct: 291 RVPQSLPLADALSRMRRINSHLALVTADNGSVVGMVALEDVVEDLVGTMRD 341
gi|3322947 (AE001239) hemolysin (tlyC) [Treponema pallidum]
Length = 265
Score = 126 bits (313), Expect = 4e-28
Identities = 58/195 (29%), Positives = 115/195 (58%), Gaps = 1/195 (0%)
Query: 196 INEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKT 255
+NE++ + + + + D +++M+ R+D++ + + +S E ++ + GH+RFP+ +T
Sbjct: 21 LNEEKQDMIRGIVDLSDTSVREVMIPRIDVDFLELSMSGETLVEKVTESGHSRFPVYEQT 80
Query: 256 KDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLD 315
D+++G + +++LIK + +++++++P ++ + LL E ++ H H AI +D
Sbjct: 81 IDNVVGVLYVKDLIKLFGRPQEVRLERLLRKPFFVPESKRIDSLLREFKRRHVHIAIAVD 140
Query: 316 EYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDL 375
EYGG SG+ +EDI+EE+VGDIQDE DHE+E + L + D ++ L + E +
Sbjct: 141 EYGGVSGIACMEDIIEEIVGDIQDEFDHEREDIEPLGQGVWLCDARVDLEDLSECLHTVF 200
Query: 376 AQNNLSKTISGFITN 390
T+ GF+ N
Sbjct: 201 PSQEFG-TLGGFVFN 214
sp|P44717|YTFL_HAEIN HYPOTHETICAL PROTEIN HI0452 >gi|1074408|pir||H64152 hypothetical
protein HI0452 - Haemophilus influenzae (strain Rd KW20)
>gi|1573427 (U32728) conserved hypothetical protein
[Haemophilus influenzae Rd]
Length = 432
Score = 125 bits (312), Expect = 5e-28
Identities = 86/387 (22%), Positives = 182/387 (46%), Gaps = 9/387 (2%)
Query: 5 LFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
+ IV +I +A +AE SL RK +L++L + + R L + H +++ Q+
Sbjct: 9 ILAIVALILSSAVVSSAEISLASPRKLKLQSLANKGDVRPLQVLKLQEHPGRFITVVQIL 68
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
+ + ++ G +GES + +A +L+ T + ++ +LIPK
Sbjct: 69 LNMVAILGGGIGESALSPYIADILNR-SFEGSWIAPTASTIAFILVTCLFILFADLIPKR 127
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
++IT E V L+V +++ + P VW + A+ +LF +S T ++ + E++
Sbjct: 128 IAITYPEMVALSVVGIMNFSMYVFKPLVWFFDTIANVFFRLFRIS--TVREDGMTSEDIF 185
Query: 185 LIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKK 244
+ G + +E+ + N+F+ M +R ++ + S +E + +
Sbjct: 186 AVVEAGAEAGVLKTQEHYLIENIFDMQARTVTSTMTTRENIVYLDRTFSRQEVMDTLSRD 245
Query: 245 GHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEI--KKIMQEPIIFIDTIPVKLLLSE 302
H++ I D ILGY+ L+ YL + K++++ + DT+ + +L
Sbjct: 246 SHSKIVICDNGLDKILGYIESHTLLTMYLQNENVVLTDPKLLRKALFVPDTLSLYEVLEL 305
Query: 303 MQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKL 362
+ + FAI+++EY G+VT+ D++ ++G++ +E+E ++ ++ +DG
Sbjct: 306 FKSTGEDFAIIVNEYALVVGIVTLNDVMSIVMGEL---VSNEEEYIVSRDENSWLIDGAT 362
Query: 363 LLSEFEELFNIDLAQNNLS-KTISGFI 388
L E + +I + + +TISGF+
Sbjct: 363 PLEEVTRVLDIAYFPDEENYETISGFM 389
emb|CAB66428.1| (AL136534) putative membrane protein (fragment). [Streptomyces
coelicolor A3(2)]
Length = 358
Score = 125 bits (310), Expect = 9e-28
Identities = 72/195 (36%), Positives = 114/195 (57%), Gaps = 3/195 (1%)
Query: 179 SEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEAL 238
SE EL + + + + I +E +++VFE D + +++MV R D+ I +I +AL
Sbjct: 164 SEAELRALVDYAEKESLIEAEERRMVHSVFELGDTLVREVMVPRTDLVVIERYKTIRQAL 223
Query: 239 KFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQE--IKKIMQEPIIFI-DTIP 295
A++ G +R P+ ++DDI+G V L++L++ + E + P F+ DT
Sbjct: 224 TLALRSGFSRIPVTGDSEDDIVGIVYLKDLVRRTHISRDAESDLVSTAMRPASFVPDTKN 283
Query: 296 VKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTT 355
LL EMQKE H A+++DEYGGT+G+VTIEDILEE+VG+I DE D E V +L
Sbjct: 284 AGDLLREMQKERNHVAVVIDEYGGTAGIVTIEDILEEIVGEITDEYDRELPPVEELGGDR 343
Query: 356 YQVDGKLLLSEFEEL 370
++V +L + + EL
Sbjct: 344 FRVTARLDIGDLGEL 358
pir||H64142 hypothetical protein HI0107 - Haemophilus influenzae (strain Rd
KW20) >gi|1573060 (U32696) conserved hypothetical
protein [Haemophilus influenzae Rd]
Length = 403
Score = 125 bits (310), Expect = 9e-28
Identities = 107/411 (26%), Positives = 191/411 (46%), Gaps = 29/411 (7%)
Query: 14 LTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGITLTSLAIG 73
L+A+F +E L+ + K RL L ++ NK AK A ++ D+ LS + L +++
Sbjct: 2 LSAYFSGSETGLLSLNKYRLRFLSEQGNKGAKKAEKLLEKPDTLLSFILIFNNLVNISA- 60
Query: 74 WVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLSITKTEGV 133
S + +++ L TFV +V E+ PK+++ E V
Sbjct: 61 ----SAIATVIGMRL---------YGDAGVAIATGLLTFVMLVFSEIFPKTVAAMHAEKV 107
Query: 134 VLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELILIANQSFIK 193
+ L K+ YP VWL+N S+ ++ L L + I SEE +++ +
Sbjct: 108 SFFSSHILTSLLKIFYPLVWLMNIFTKSLMQIVGLKLDMQKQVISSEELRSIVSEAG--E 165
Query: 194 GEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIA 253
NE+ + L ++ + + + DIMV R ++ I +D ++ H R +
Sbjct: 166 ATPNEQHPQMLLSILDMETVTVDDIMVPRNEIGGINIDDDWRAIMRQLNHAAHNRVVLYK 225
Query: 254 KTKDD-ILGYVTLQN---LIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKH 309
+ D+ +LG + ++ L+ E + + + E ++ P+K L+ + +
Sbjct: 226 GSLDEQVLGILRVREAFRLLLEKNEFTKETLIRAADEVYFIPESTPLKTQLANFRTNKER 285
Query: 310 FAILLDEYGGTSGLVTIEDILEELVGDI--QDEEDHEKELVIKLSPTTYQVDGKLLLSEF 367
+++DEYG GLVT+EDILEE+VGD +KE VI+ S + +DG L +
Sbjct: 286 IGLVVDEYGDIKGLVTLEDILEEIVGDFTTSTAPSIDKE-VIQQSDGSMIIDGSANLRDL 344
Query: 368 EELFNIDLAQNNLSKTISGFITNYSLEQNEPL-EVGQTFEFDNLKITIIEM 417
++FN +L + ++T +G I LE E + + G E D L ITI+E+
Sbjct: 345 NKMFNWELDTED-ARTFNGLI----LEHLEEIPDEGTICEIDGLLITILEV 390
gb|AAD18650| (AE001636) CBS Domains (Hemolysin homolog) [Chlamydia pneumoniae]
Length = 387
Score = 123 bits (306), Expect = 3e-27
Identities = 57/181 (31%), Positives = 112/181 (61%), Gaps = 2/181 (1%)
Query: 210 FDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLI 269
FD+LI +++M+ ++D+ +P + +++EAL ++G++R P+ K D+I G + +++L+
Sbjct: 161 FDNLIVREVMIPKVDIFALPEETTLQEALVLVSEEGYSRVPVYKKNLDNITGILLVKDLL 220
Query: 270 KEYLTAP--GQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIE 327
Y ++ Q I + + P + LL E +++H+H AI+++EYG T G+ T+E
Sbjct: 221 LLYTSSHDLSQPISSVAKPPFYAPEIKKASSLLQEFRQKHRHLAIIVNEYGFTEGIATME 280
Query: 328 DILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGF 387
DI+EE++G+I DE D ++ K +++ VDG++ +S+ EE FN+ + N T+ G
Sbjct: 281 DIIEEIIGEIADEHDVQENTPYKKIGSSWIVDGRMNISDAEEYFNLKIDHENSYDTLGGH 340
Query: 388 I 388
+
Sbjct: 341 V 341
gi|2982841 (AE000673) hemolysin [Aquifex aeolicus]
Length = 416
Score = 123 bits (306), Expect = 3e-27
Identities = 104/412 (25%), Positives = 194/412 (46%), Gaps = 29/412 (7%)
Query: 8 IVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGITL 67
+ I L FF +E +LV K L+ + K+ K+ + ++ + Y++ LG T+
Sbjct: 10 VFFFIILEGFFAGSEIALVNADKGFLKAVYKK--KKYSFLKHFLDSPEEYITLTMLGYTV 67
Query: 68 TSLAIGWVGESTMHSI-LAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLS 126
+ V S ++++ L L YV +++GE+IPKSL
Sbjct: 68 SI-----VFASALYTLFLMNLSKYVPEIKGKEVLLAETLVIFT-----IILGEIIPKSLF 117
Query: 127 ITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELILI 186
+ VV+ L + PF+ L A + I F +G+ E++I +
Sbjct: 118 QHYADKVVIPSLYILDKLRIVLKPFLVLAKAVSRFISSRF-----AKGESKVRREDIIKL 172
Query: 187 ANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGH 246
+ K +E ++N+ F + +I+ ++ IP ++ +A++ K G+
Sbjct: 173 LRE---KKSFSESLGYVISNILSFKERRIGEIVRPLYEVVMIPDTATVLQAIEQIKKSGY 229
Query: 247 TRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKE 306
R P+ K DDI+GYV+ +LI + L P IK ++ +IF + P+ +L +++
Sbjct: 230 ARIPVYRKRVDDIIGYVSAYDLIDKPLDEP---IKSFIRRILIFSEFTPLPKVLEVFKEK 286
Query: 307 HKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSE 366
+H A+++DE G G+VT+EDI E++GD E+ E+ LV ++S T+ DGK+ ++E
Sbjct: 287 KEHIALVVDERGVILGIVTLEDIFREILGDFISEKG-EEPLVREVSKDTWVADGKVEINE 345
Query: 367 FEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMD 418
+ I++ + T+SGFI Y L + + G +D +++ D
Sbjct: 346 LRRITGINIPDGPYN-TLSGFIA-YQLGRIP--KKGDVVSYDGYNFKVVDGD 393
gb|AAF30477.1|AE002107_1 (AE002107) hemolysin [Ureaplasma urealyticum]
Length = 442
Score = 122 bits (302), Expect = 8e-27
Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 26/369 (7%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSA 60
VIL + ++L+ F + FF AAE ++ + + +T + N ++K N+V Y
Sbjct: 21 VILAIITLILICF-SVFFSAAETAITSVTTVKWKT--ESNKIKSKTITNVV-----YKMI 72
Query: 61 CQLGITLTSLAIGWVGESTMHSILAPL----LSYVXXXXXXXXXXXXXXXXXXXTFVHVV 116
ITL ++ IG +T S +A L + T + ++
Sbjct: 73 NNYTITLATILIGNTLVNTASSTIAGLFFAGIMKSFSTTSNAEAIGTGIATGIITLIVLI 132
Query: 117 IGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDE 176
GE IPK+ + V+ VA PL+ FY L +P W LN + K N+ AT
Sbjct: 133 FGEFIPKNFAKKNPIKVLKLVAYPLNCFYILFWPLTWSLNRIFNK--KSQNIITAT---- 186
Query: 177 IHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEE 236
EEEL + +G ++ +E +N FDD++ K MV + I + ++ +
Sbjct: 187 ---EEELKSLIEVIRHEGTLDSQEALIINKAILFDDILIKQKMVPWTQVVKINENKTVLQ 243
Query: 237 ALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPV 296
+ + G +R ++ K D+++G + L+ +IK L P + I+ IMQ P++ +
Sbjct: 244 SFEIFNSTGFSRLVVVNK-NDEVVGIIYLKKIIKYLLNEPNKIIRTIMQTPLLINQKDTL 302
Query: 297 KLLLSEMQKEHKHFAILLDEYGGTS--GLVTIEDILEELVGDIQDEEDHEKEL--VIKLS 352
L MQ + H I++D + G++T+E+I EEL G++ DE D+E E+ + ++
Sbjct: 303 YDGLRTMQFQRIHLGIVVDNITEKNPIGIITLENITEELTGNVYDETDNENEIKEIQIVN 362
Query: 353 PTTYQVDGK 361
TT++VD K
Sbjct: 363 ETTWRVDAK 371
emb|CAB53285.1| (AL109972) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 339
Score = 119 bits (296), Expect = 4e-26
Identities = 79/328 (24%), Positives = 152/328 (46%), Gaps = 2/328 (0%)
Query: 3 LNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQ 62
L LF+ VL++ + FFVAAEF+LV ++ R+E + + AK AL + L L+ Q
Sbjct: 5 LALFVTVLLLVGSGFFVAAEFALVAAKRHRMEKAVADGQRGAKAALAGMRELSLMLAGAQ 64
Query: 63 LGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIP 122
LGIT+ +L +G V + + L PLL + F+H+V+GE+ P
Sbjct: 65 LGITVCTLGLGSVSKPAISHELDPLLHELGLPAALSYGVAFALAMIVVVFLHMVLGEMAP 124
Query: 123 KSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEE 182
KS +I E + +A P P + +LN ++++ +L ++ E +H+ ++
Sbjct: 125 KSWAIAHPERSAMLLAPPFRAVTTAVRPLIRVLNRISNALVRLCRVAPRDELASVHNRDQ 184
Query: 183 LILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAI 242
L + +S G I+E + + L + +D+M + + EE L A+
Sbjct: 185 LTHLVEESERLGLISETDSDLLTRSLTEPETPVRDLMAPAAGIVAVDAGAEAEEIL--AL 242
Query: 243 KKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSE 302
H R ++ + +D ILG V ++++ + + + + V +
Sbjct: 243 AAAHDRTRLLVRQEDAILGSVHARDVLVARAQGRATGARALARPVPELAEDATVAEAIEV 302
Query: 303 MQKEHKHFAILLDEYGGTSGLVTIEDIL 330
+++ A++ D G +G+V+++D+L
Sbjct: 303 LRRRRASLAVVRDGAGRLTGIVSLDDLL 330
sp|P74078|YC54_SYNY3 HYPOTHETICAL 38.3 KD PROTEIN SLL1254 >gi|1653241|dbj|BAA18156|
(D90912) hemolysin [Synechocystis sp.]
Length = 346
Score = 119 bits (296), Expect = 4e-26
Identities = 89/357 (24%), Positives = 169/357 (46%), Gaps = 43/357 (12%)
Query: 1 VILNLFIIVLMIFLTAFFVAAEFS--LVKIRKSRLETLEKENNKRAKLALNIVNH----- 53
++ +FI++L + + AA FS LVK+R+ L + NN A +AL + H
Sbjct: 4 IVAAIFIVLLGSGICSCAEAALFSVPLVKVRQ-----LSQSNNPSA-IALQAIRHRMNRP 57
Query: 54 LDSYLSACQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFV 113
+ + + + + S+ IG + + + S + T +
Sbjct: 58 IGTIVVLNNIFNIVGSITIGALATKHLQDAWMGVFSGIL------------------TLL 99
Query: 114 HVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATE 173
+V GE+IPK+L + L +A P+ + + P VWL+ + T
Sbjct: 100 IIVFGEIIPKTLGERYATNIALLIAIPVRFLTLIFTPLVWLIEQITNPF---------TH 150
Query: 174 GDEIHS--EEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVD 231
G + S E E+ +A + +G I E + + VF+ +DL+A D+M R+ + + +
Sbjct: 151 GKRVPSTNEAEIKFLATLGYKEGVIEGDEEQMIQRVFQLNDLMAVDLMTPRVIITYLLGE 210
Query: 232 VSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFI 291
+++ E + I+ HTR I+ + D++LG Q+L+ + G + + P F+
Sbjct: 211 LTLAECQQDIIQSQHTRILIVDEYIDEVLGIALKQDLLTALIQGEGYKTIAELARPAQFV 270
Query: 292 -DTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKEL 347
+ + LL + Q++ +H +++DEYGG +G++T+ED++E L G+I DE D +L
Sbjct: 271 PEGMRADKLLKQFQEKREHLMVVIDEYGGVAGVITLEDVVEVLTGEIVDETDKNIDL 327
gb|AAC68020.1| (AE001316) (CBS Domain) [Chlamydia trachomatis]
Length = 369
Score = 117 bits (290), Expect = 2e-25
Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 12/234 (5%)
Query: 198 EKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKD 257
E E N+ D +IA++IM + D+ + D I +A I +G++R P+ K+ D
Sbjct: 132 EPPNELSTNISCLDHMIAREIMTPKADIFALQGDTPISQAFPLIIDEGYSRIPLFTKSID 191
Query: 258 DILGYVTLQNLIKEYLTAP--GQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLD 315
DI G V +++L Y P Q + I P+ + LLL E +++ H AI+++
Sbjct: 192 DITGMVLVKDLSPVYYKDPHTSQPLSSIAYPPLYTPEIRRASLLLQEFRQKRCHLAIVVN 251
Query: 316 EYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDL 375
EYG T GLV++EDI+EE+ G+I DE D+++++ K + VDG++ +S+ EE F + +
Sbjct: 252 EYGFTEGLVSMEDIIEEIFGEIADEYDNQEDVHHKKIGNAWIVDGRMNISDAEECFGLHI 311
Query: 376 AQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITI-------IEMDKITP 422
+ T+ G++ + + E G +++ I I +E KITP
Sbjct: 312 EHESSYDTLGGYVFH---KLGAVPEKGMKIYYEDFAIDILSCSDRSVEKMKITP 362
sp|P77392|YBEX_ECOLI HYPOTHETICAL 33.3 KD PROTEIN IN CUTE-ASNB INTERGENIC REGION
>gi|1778577 (U82598) similar to H. influenzae
[Escherichia coli] >gi|1786879 (AE000170) putative
transport protein [Escherichia coli]
Length = 292
Score = 116 bits (288), Expect = 3e-25
Identities = 68/215 (31%), Positives = 119/215 (54%), Gaps = 3/215 (1%)
Query: 176 EIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIE 235
E + +EL+ + S I+E + L V + D +DIM+ R M T+ + +++
Sbjct: 30 EPKNRDELLALIRDSGQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD 89
Query: 236 EALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLT-APGQEIKKIMQEPIIFIDTI 294
E L I+ H+RFP+I++ KD I G + ++L+ + A + K++++ ++ ++
Sbjct: 90 ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESK 149
Query: 295 PVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIK-LSP 353
V +L E + + H AI++DE+GG SGLVTIEDILE +VG+I+DE D E ++ + LS
Sbjct: 150 RVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSR 209
Query: 354 TTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
T+ V + +F E F + + TI G +
Sbjct: 210 HTWTVRALASIEDFNEAFGTHFSDEEVD-TIGGLV 243
sp|P37908|YFJD_ECOLI HYPOTHETICAL 46.4 KD PROTEIN IN FFH-GRPE INTERGENIC REGION
Length = 428
Score = 114 bits (283), Expect = 1e-24
Identities = 95/404 (23%), Positives = 182/404 (44%), Gaps = 25/404 (6%)
Query: 5 LFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
+ I+++M+ ++A+F +E ++ + + RL + K+ N+ AK ++ D +S +G
Sbjct: 10 IIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIG 69
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
L ++ +G +I+ L TFV +V E++PK+
Sbjct: 70 NNLVNILASALG-----TIVGMRL---------YGDAGVAIATGVLTFVVLVFAEVLPKT 115
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
++ E V + L L P VWLLNA + ++ + S+EEL
Sbjct: 116 IAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELR 175
Query: 185 LIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKK 244
I ++S + +I+ + + L +V + + + DIMV R ++ I ++ + L+
Sbjct: 176 TIVHES--RSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHS 233
Query: 245 GHTRFPIIAKTKDDILGYVTLQN---LIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLS 301
H R + + DD + + ++ L+ E + + + E + P+ L
Sbjct: 234 PHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLV 293
Query: 302 EMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHE-KELVIKLSPTTYQVDG 360
+ Q+ K ++++EYG GLVT+EDILEE+VGD E V + + +DG
Sbjct: 294 KFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDG 353
Query: 361 KLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQT 404
+ E + FN L +++ ++T++G I LE E + V T
Sbjct: 354 TANVREINKAFNWHLPEDD-ARTVNGVI----LEALEEIPVAGT 392
sp|Q54318|HLYC_TREHY HEMOLYSIN C >gi|511148|emb|CAA51657| (X73141) hemolysin
[Brachyspira hyodysenteriae]
Length = 268
Score = 114 bits (283), Expect = 1e-24
Identities = 60/196 (30%), Positives = 112/196 (56%), Gaps = 2/196 (1%)
Query: 196 INEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKT 255
+ E E E + N E ++IMV R+D+ IP++ S ++ +K + ++R P+
Sbjct: 29 LTEAEREIITNTIELKSKSVREIMVPRVDVVMIPMESSYDKVIKAFNRDRNSRIPVYKDG 88
Query: 256 KDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLD 315
DDI+G + +++LI +KKI+ +P+ +I + LL +++ H A+++D
Sbjct: 89 IDDIVGVLYVKDLIDA--EEKNFSLKKILHKPLFVPISISLMELLKNFREKQIHIAMVVD 146
Query: 316 EYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDL 375
EYGG SG+V++ED+LE+++GDI+DE D E E + TY VD + + +F + +
Sbjct: 147 EYGGFSGIVSMEDVLEQIIGDIRDEYDEEDEEIKSNDDGTYLVDARTRIDDFNKYEILPP 206
Query: 376 AQNNLSKTISGFITNY 391
++ + T+ GF+ +Y
Sbjct: 207 IPDDEADTVGGFLFSY 222
gi|4191604 (AF116773) magnesium efflux protein CorC [Salmonella typhimurium]
Length = 273
Score = 113 bits (280), Expect = 3e-24
Identities = 66/215 (30%), Positives = 118/215 (54%), Gaps = 3/215 (1%)
Query: 176 EIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIE 235
E + +EL+ + S I+E + L V + D +DIM+ R M T+ + +++
Sbjct: 11 EPKNRDELLALIRDSGQNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD 70
Query: 236 EALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLT-APGQEIKKIMQEPIIFIDTI 294
E L I+ H+RFP+I++ KD I G + ++L+ + A + K+++ ++ ++
Sbjct: 71 ECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESK 130
Query: 295 PVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIK-LSP 353
V +L E + + H AI++DE+GG SGLVTIEDILE +VG+I+DE D E ++ + LS
Sbjct: 131 RVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSR 190
Query: 354 TTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
T+ + + +F + F + + TI G +
Sbjct: 191 HTWTIRALASIEDFNDAFGTHFSDEEVD-TIGGLV 224
sp|Q57368|YBEX_HAEIN HYPOTHETICAL PROTEIN HI0301 >gi|1074190|pir||G64060 hemolysin
(tlyC) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573270 (U32716) hemolysin, putative [Haemophilus
influenzae Rd]
Length = 299
Score = 111 bits (276), Expect = 9e-24
Identities = 72/218 (33%), Positives = 118/218 (54%), Gaps = 7/218 (3%)
Query: 176 EIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIE 235
E+ + EEL+ + S I++ E + V E +L +DIM+ R + I +
Sbjct: 30 ELKNREELVEVIRDSEQNDLIDQNTREMIEGVMEIAELRVRDIMIPRSQIIFIEDQQDLN 89
Query: 236 EALKFAIKKGHTRFPIIAKT--KDDILGYVTLQNLIKEYLTAPGQ--EIKKIMQEPIIFI 291
L I+ H+RFP+IA +D+I+G + ++L+K +L + ++ +++ +I
Sbjct: 90 TCLNTIIESAHSRFPVIADADDRDNIVGILHAKDLLK-FLREDAEVFDLSSLLRPVVIVP 148
Query: 292 DTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIK- 350
++ V +L + + E H AI++DE+G SGLVTIEDILE++VGDI+DE D E+ I+
Sbjct: 149 ESKRVDRMLKDFRSERFHMAIVVDEFGAVSGLVTIEDILEQIVGDIEDEFDEEEIADIRQ 208
Query: 351 LSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
LS TY V + +F FN D + TI G I
Sbjct: 209 LSRHTYAVRALTDIDDFNAQFNTDFDDEEVD-TIGGLI 245
gi|3322283 (AE001188) hemolysin, putative [Treponema pallidum]
Length = 407
Score = 111 bits (274), Expect = 1e-23
Identities = 105/429 (24%), Positives = 193/429 (44%), Gaps = 41/429 (9%)
Query: 14 LTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGITLTSLAIG 73
L+ F AAE + + RL L ++ + RA++A+ I+ + YL+A +G TL S A+
Sbjct: 2 LSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSAL- 60
Query: 74 WVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLSITKTEGV 133
S + ++ A L + T + ++ GE+IPKSL++ + V
Sbjct: 61 ----SAVIALFARALFGI---------HAVGWSIGAGTVLTLLFGEIIPKSLALCRPNAV 107
Query: 134 VLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNL-----SLATEGDEIHSEEELILIAN 188
L A L + + PFV + + S++ +L + SL D++H+ +L A
Sbjct: 108 ALHTARFLQWSALMLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHT----VLYAG 163
Query: 189 QSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTR 248
++ G + +E + L A+DIM R + +P S+ EA+ A K +R
Sbjct: 164 EA--DGTVTSRERALYQRILHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSR 221
Query: 249 FPIIAKTKDDILGYVTLQNLI--KEYLTAPGQEIKKIMQE---PIIFIDTIPVKLLLSEM 303
P+ ++ D I+G ++ + +E +E +MQ P+ + + + ++
Sbjct: 222 VPVYERSVDWIIGIFDVKKFLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKL 281
Query: 304 QKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDE--EDHEKELVIKLSPTTYQVDGK 361
+ + AI+LDEYGGT+GLVT +I + E + V + Y G
Sbjct: 282 RAHSRAVAIVLDEYGGTAGLVTKHNIYQAFFKSSAHEFPVNSTGPQVTRAGVRAYIFPGS 341
Query: 362 LLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEMDKIT 421
L L E +L D + + S+T++G I Y+ +P G T F + + ++++
Sbjct: 342 LRLDEINDLLGTDFS-SCTSETLAGLIMEYTGCIPDP---GTTVVFGSWRCVVLQL---- 393
Query: 422 PHILEVKRV 430
H+ + RV
Sbjct: 394 -HVRRIVRV 401
sp|O05961|Y740_RICPR HYPOTHETICAL PROTEIN RP740 >gi|2073494|emb|CAA72456| (Y11778)
hemolysin [Rickettsia prowazekii]
>gi|3861269|emb|CAA15168| (AJ235273) HEMOLYSIN C (tlyC)
[Rickettsia prowazekii]
Length = 303
Score = 110 bits (272), Expect = 3e-23
Identities = 57/148 (38%), Positives = 96/148 (64%), Gaps = 5/148 (3%)
Query: 200 EYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEE---ALKFAIKKGHTRFPIIAKTK 256
E+ L N+ + +D I +DIMV R D+ I + ++EE ++K A+ HTR I T
Sbjct: 62 EFNILANLLKLEDKIVEDIMVPRSDIIAIKLTTNLEELSESIKIAVP--HTRTLIYDGTL 119
Query: 257 DDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDE 316
D+++G++ +++L K T +K+++++ II ++ + LL++M++E H AI++DE
Sbjct: 120 DNVVGFIHIKDLFKALATKQNSPLKRLIRKHIIAAPSMKLLDLLAKMRRERTHIAIVVDE 179
Query: 317 YGGTSGLVTIEDILEELVGDIQDEEDHE 344
YGGT GLVTIED++EE+VG I DE D +
Sbjct: 180 YGGTDGLVTIEDLIEEIVGRIDDEHDQQ 207
gi|3639065 (AF085347) integral membrane protein CorC [Salmonella typhimurium]
Length = 292
Score = 109 bits (271), Expect = 3e-23
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 3/215 (1%)
Query: 176 EIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIE 235
E + +EL+ + S I+E + L V + D +DIM+ R M T+ + +++
Sbjct: 30 EPKNRDELLALIRDSGQNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD 89
Query: 236 EALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLT-APGQEIKKIMQEPIIFIDTI 294
E L I+ H+RFP+I++ KD I G + ++ + + A + K+++ ++ ++
Sbjct: 90 ECLDVIIESAHSRFPVISEDKDHIEGILMAKDFLPFMRSDAEAFSMDKVLRTAVVVPESK 149
Query: 295 PVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIK-LSP 353
V +L E + + H AI++DE+GG SGLVTIEDILE +VG I+DE D E ++ + LS
Sbjct: 150 RVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGVIEDEYDEEDDIDFRQLSR 209
Query: 354 TTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
T+ + + +F + F + + TI G +
Sbjct: 210 HTWTIRALASIEDFNDAFGTHFSDEEVD-TIGGLV 243
dbj|BAA16497| (D90888) similar to [SwissProt Accession Number P37908]
[Escherichia coli]
Length = 413
Score = 109 bits (270), Expect = 4e-23
Identities = 94/398 (23%), Positives = 177/398 (43%), Gaps = 25/398 (6%)
Query: 11 MIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGITLTSL 70
M+ ++A+F +E ++ + + RL + K+ N+ AK ++ D +S +G L ++
Sbjct: 1 MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNI 60
Query: 71 AIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLSITKT 130
+G +I+ L TFV +V E++PK+++
Sbjct: 61 LASALG-----TIVGMRL---------YGDAGVAIATGVLTFVVLVFAEVLPKTIAALYP 106
Query: 131 EGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELILIANQS 190
E V + L L P VWLLNA + ++ + S+EEL I ++S
Sbjct: 107 EKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHES 166
Query: 191 FIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFP 250
+ +I+ + + L +V + + + DIMV R ++ I ++ + L+ H R
Sbjct: 167 --RSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIV 224
Query: 251 IIAKTKDDILGYVTLQN---LIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEH 307
+ + DD + + ++ L+ E + + + E + P+ L + Q+
Sbjct: 225 LYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNK 284
Query: 308 KHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHE-KELVIKLSPTTYQVDGKLLLSE 366
K ++++EYG GLVT+EDILEE+VGD E V + + +DG + E
Sbjct: 285 KKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVRE 344
Query: 367 FEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQT 404
+ FN L +++ ++T++G I LE E + V T
Sbjct: 345 INKAFNWHLPEDD-ARTVNGVI----LEALEEIPVAGT 377
dbj|BAA12353| (D84432) YrkA [Bacillus subtilis]
Length = 217
Score = 109 bits (269), Expect = 6e-23
Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 13/204 (6%)
Query: 233 SIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQ-----EP 287
S E +K + +TR+P++ KD I+G++ + + Y+ Q+IK+ + P
Sbjct: 17 SYETIVKIIKTESYTRYPVLNGDKDSIIGFINAKEFLSAYIDTD-QKIKEDFKLENHINP 75
Query: 288 IIF-IDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED-HEK 345
+I I+++P+ +L +MQKE H AIL+DEYGGTSGLVT EDILEE+VG+I+DE D E
Sbjct: 76 VIHVIESVPIHDVLVKMQKERTHIAILVDEYGGTSGLVTAEDILEEIVGEIRDEFDKDEV 135
Query: 346 ELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTF 405
+ K++ Y +D K+L+ + +L LA + + TI G+ + Q VG
Sbjct: 136 PNIRKVNDNHYILDSKVLIEDVNDLLGTTLASDEVD-TIGGWF----MTQQIDAAVGSVI 190
Query: 406 EFDNLKITIIEMDKITPHILEVKR 429
E D + E + LE+ R
Sbjct: 191 EADGYIFKVHETVGRHINYLEIVR 214
sp|Q49399|Y146_MYCGE HYPOTHETICAL PROTEIN MG146 >gi|1361538|pir||B64216 hemolysin tlyC
homolog - Mycoplasma genitalium (SGC3) >gi|3844739
(U39695) conserved hypothetical protein [Mycoplasma
genitalium]
Length = 424
Score = 107 bits (265), Expect = 2e-22
Identities = 82/349 (23%), Positives = 163/349 (46%), Gaps = 31/349 (8%)
Query: 3 LNLFIIVLMIFLTAFFV----AAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYL 58
L L +I+L I L AF A E ++ + R + K NNK+ KL+ I+NH ++
Sbjct: 8 LTLTVIILSIILLAFISTVVSAYETAITSLTPYRWKNYIKTNNKQDKLSTKIINHFQNHY 67
Query: 59 SACQLGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVI- 117
S+C + I +T+ +I+A ++S + V V+
Sbjct: 68 SSCLITILITN------------NIVAIMVSNILFLALEQTIKNELLSSVLNLVVSGVLI 115
Query: 118 ---GELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEG 174
E++PK+L ++ A +++FY + +P L S I K + L
Sbjct: 116 VSFCEILPKTLGRINVIRTLVLFAYLVYFFYLIFWPITKL----TSLILKKYENPLPV-- 169
Query: 175 DEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSI 234
S +++ ++ G ++++ + FD ++ K +M+ + ++ SI
Sbjct: 170 ----SRKDVYYFIDEIEQNGLFSKEDSLLIKKTLIFDQVLVKKVMIKWKKVAYCYLNDSI 225
Query: 235 EEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQ-EIKKIMQEPIIFIDT 293
K +++ +R P++ KT + I+G++ L++ P ++ +++ ++ D+
Sbjct: 226 NLIAKQFLQRQFSRMPVVDKTTNKIVGFIHLKDFFTAKEANPKSLDLNQLLYPVVLVQDS 285
Query: 294 IPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEED 342
P+K L +M+ H A++ D++ T G+V++EDI+EELVG+I DE D
Sbjct: 286 TPIKQALRQMRLNRAHLAVVNDKHEKTIGIVSMEDIIEELVGEIYDEHD 334
dbj|BAA35309| (D90705) Hemolysin (tlyC) homolog [Escherichia coli]
>gi|4062277|dbj|BAA35313| (D90706) Hemolysin (tlyC)
homolog [Escherichia coli]
Length = 231
Score = 107 bits (264), Expect = 2e-22
Identities = 60/179 (33%), Positives = 104/179 (57%), Gaps = 3/179 (1%)
Query: 212 DLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKE 271
D +DIM+ R M T+ + +++E L I+ H+RFP+I++ KD I G + ++L+
Sbjct: 5 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 64
Query: 272 YLT-APGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDIL 330
+ A + K++++ ++ ++ V +L E + + H AI++DE+GG SGLVTIEDIL
Sbjct: 65 MRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDIL 124
Query: 331 EELVGDIQDEEDHEKELVIK-LSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFI 388
E +VG+I+DE D E ++ + LS T+ V + +F E F + + TI G +
Sbjct: 125 ELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFSDEEVD-TIGGLV 182
gb|AAC62436.1| (U97482) hemolysin [Rickettsia typhi]
Length = 303
Score = 106 bits (263), Expect = 3e-22
Identities = 55/146 (37%), Positives = 92/146 (62%), Gaps = 1/146 (0%)
Query: 200 EYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALK-FAIKKGHTRFPIIAKTKDD 258
E L N+ + +D +DIMV R D+ I + ++EE + I+ HTR I T D+
Sbjct: 62 ECNILANLLQLEDKTVEDIMVPRSDIVAIKLTTNLEELSESIKIEVPHTRTLIYDGTLDN 121
Query: 259 ILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYG 318
++G++ +++L K T +K+++++ II ++ + LL++M++E H AI++DEYG
Sbjct: 122 VVGFIHIKDLFKALATKQNSPLKRLIRKHIIAAPSMKLLDLLAKMRRERTHIAIVVDEYG 181
Query: 319 GTSGLVTIEDILEELVGDIQDEEDHE 344
GT GLVTIED++EE+VG I DE D +
Sbjct: 182 GTDGLVTIEDLIEEIVGRIDDEHDQQ 207
gb|AAD18537| (AE001623) CBS Domain protein (Hemolysin Homolog) [Chlamydia
pneumoniae]
Length = 411
Score = 99.8 bits (245), Expect = 4e-20
Identities = 75/306 (24%), Positives = 142/306 (45%), Gaps = 10/306 (3%)
Query: 113 VHVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLAT 172
+ +++GE++PK++++ + +VA + K+ P LL+ I + L+
Sbjct: 98 ITLILGEILPKAVALPFNTQIASSVAPLILCVTKIFKP---LLHWGIVGINYVVQWILSK 154
Query: 173 EGDEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDV 232
+ +I +EL + G +N++E L D K+ M R D+ +
Sbjct: 155 QQIDIIQPQELKEVLQSCKDFGVVNQEESRLLYGYLSLSDCSVKERMQPRQDILFYDIQT 214
Query: 233 SIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLI-KEYLTAPGQEIKKIMQEPIIFI 291
+E K+ +R PI ++LG T ++L+ + ++ ++++P
Sbjct: 215 PLENLYLLFSKQHCSRVPICNDNLQNLLGICTARSLLLHDKPLQSSDDLLPLLKKPYYMP 274
Query: 292 DTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKL 351
+TI K+ L +M E + +++DEYG GL+T ED+ E + G+I D+ D+ K L
Sbjct: 275 ETISAKMALCQMAAEDETLGMIIDEYGSIEGLITQEDLFEIVAGEIVDQRDN-KILYTTS 333
Query: 352 SPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPL-EVGQTFEFDNL 410
G L L EF E+F+I+L NN TI G++ +EQ + G ++NL
Sbjct: 334 GADVIIASGTLELREFSEIFDINLPTNNNIATIGGWL----IEQIGTIPTTGMKLSWNNL 389
Query: 411 KITIIE 416
+++
Sbjct: 390 LFQVLD 395
sp|P75586|Y146_MYCPN HYPOTHETICAL PROTEIN MG146 HOMOLOG >gi|2146150|pir||S73998
hemolysin hlyC homolog VXpSPT7_orf424 - Mycoplasma
pneumoniae (SGC3) (ATCC 29342) >gi|1674378 (AE000062)
Mycoplasma pneumoniae, hemolysin (hlyC) homolog protein;
similar to GenBank Accession Number G64060, from H.
influenzae [Mycoplasma pneumoniae]
Length = 424
Score = 95.6 bits (234), Expect = 7e-19
Identities = 86/366 (23%), Positives = 164/366 (44%), Gaps = 38/366 (10%)
Query: 3 LNLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQ 62
L + I+L+ ++A A E ++ I + K +NK+ KL IVNH SAC
Sbjct: 12 LIIISIILLACISAVVSAYETAITSITSYKWSNYVKTHNKQKKLTTKIVNHFQKNYSACL 71
Query: 63 LGITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVH----VVIG 118
+ I + + +I+A L+S + + +++
Sbjct: 72 ITILVAN------------NIVAILVSNILFLALDQSIKNPAISSALNLLISGVLLLMLC 119
Query: 119 ELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLAT-EGDEI 177
E+ PK+L+ V++ A +++FY L +P I KL ++ A E
Sbjct: 120 EITPKTLARINIIRVLVYFAVVVYFFYILFWP-----------ITKLASIIFAKYEKAPP 168
Query: 178 HSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDM----ETIPVDVS 233
S ++ ++ G +++ + + FD ++ IM+ + E PV
Sbjct: 169 VSRRDVYFFIDEIEQNGLFTKEDGQLIKRTLIFDQVLVDQIMIKWNRVVYCYEGDPVKTI 228
Query: 234 IEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFI-D 292
E+ L +R P++ +T ++++G++ L++L + + + + P + + +
Sbjct: 229 KEKFLHGQF----SRMPVLDQTSNEVVGFIHLKDLFSSLEKSNEPFVLQELLYPAVLVSN 284
Query: 293 TIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLS 352
T P+K L +M+ H A++ D++ T G+V++EDI+EELVG+I DE D E E V L
Sbjct: 285 TTPIKQALRQMRLHRAHLAVVQDKHHHTIGIVSMEDIIEELVGEIYDEHD-EVEAVQTLD 343
Query: 353 PTTYQV 358
T+ V
Sbjct: 344 NNTWLV 349
emb|CAA10144| (AJ012716) hypothetical protein [Erwinia chrysanthemi]
Length = 264
Score = 92.1 bits (225), Expect = 8e-18
Identities = 59/260 (22%), Positives = 116/260 (43%), Gaps = 3/260 (1%)
Query: 4 NLFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQL 63
+L II+ +I ++AFF +E SL RK +L+ + E + A L L + + Q+
Sbjct: 4 SLLIILFLIAISAFFSLSEISLAASRKIKLKLMADEGDLNAALVLKFQETPGIFFTVIQI 63
Query: 64 GITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPK 123
G+ ++ G +G++ S +L T + ++ G+L PK
Sbjct: 64 GLNAVAILAGIIGDAAF-SPYFEMLFASFLPQDMVARASFICSFVLVTSLFILFGDLTPK 122
Query: 124 SLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEEL 183
+ + E + + + P+ + + P VWL N A+ I +LF L + + D + +++
Sbjct: 123 RIGMIAPEAIAIRIINPMRFCLLVFRPLVWLFNGLANLIFRLFKLPMVRKED--ITPDDI 180
Query: 184 ILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIK 243
+ + G + ++E+E + NVFE + M SR + + + +
Sbjct: 181 YAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTSRESVVYFDLHEDETQIKEKIAH 240
Query: 244 KGHTRFPIIAKTKDDILGYV 263
+ H++F + T D I+GYV
Sbjct: 241 QPHSKFLVCNGTIDQIVGYV 260
sp|P76389|YEGH_ECOLI HYPOTHETICAL 59.5 KD PROTEIN IN WZA-ASMA INTERGENIC REGION
Length = 527
Score = 89.3 bits (218), Expect = 5e-17
Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 9/245 (3%)
Query: 168 LSLATEGDEIHSEEELILI--ANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDM 225
LS E E+ +E +L+ NQ N +E + V + IM SR D+
Sbjct: 257 LSGQKEDAELDAETASMLVDHGNQQIF----NPQERRMIERVLNLNQRTVSSIMTSRHDI 312
Query: 226 ETIPVDVSIEEALKFAIKKGHTRFPII-AKTKDDILGYVTLQNLIKEYLTAPGQEIKKIM 284
E I ++ EE + + HTR + +D+LG V + +L+++ L ++ ++
Sbjct: 313 EHIDLNAPEEEIRQLLERNQHTRLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLI 372
Query: 285 QEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQD--EED 342
++P++F +T+P+ L + + HFA ++DE+G G+VT+ D+ E + G++ + EE
Sbjct: 373 RQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEI 432
Query: 343 HEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVG 402
+ + K + ++ +G + L + + + L + TI+G + Y +P E
Sbjct: 433 DARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEV 492
Query: 403 QTFEF 407
Q ++
Sbjct: 493 QVGDY 497
gi|1788377 (AE000296) putative transport protein [Escherichia coli]
Length = 549
Score = 89.3 bits (218), Expect = 5e-17
Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 9/245 (3%)
Query: 168 LSLATEGDEIHSEEELILI--ANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDM 225
LS E E+ +E +L+ NQ N +E + V + IM SR D+
Sbjct: 279 LSGQKEDAELDAETASMLVDHGNQQIF----NPQERRMIERVLNLNQRTVSSIMTSRHDI 334
Query: 226 ETIPVDVSIEEALKFAIKKGHTRFPII-AKTKDDILGYVTLQNLIKEYLTAPGQEIKKIM 284
E I ++ EE + + HTR + +D+LG V + +L+++ L ++ ++
Sbjct: 335 EHIDLNAPEEEIRQLLERNQHTRLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLI 394
Query: 285 QEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQD--EED 342
++P++F +T+P+ L + + HFA ++DE+G G+VT+ D+ E + G++ + EE
Sbjct: 395 RQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEI 454
Query: 343 HEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVG 402
+ + K + ++ +G + L + + + L + TI+G + Y +P E
Sbjct: 455 DARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEV 514
Query: 403 QTFEF 407
Q ++
Sbjct: 515 QVGDY 519
dbj|BAA15916| (D90844) ORF_ID:o355#2; similar to [SwissProt Accession Number
P43932] [Escherichia coli]
Length = 540
Score = 89.3 bits (218), Expect = 5e-17
Identities = 59/245 (24%), Positives = 118/245 (48%), Gaps = 9/245 (3%)
Query: 168 LSLATEGDEIHSEEELILI--ANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDM 225
LS E E+ +E +L+ NQ N +E + V + IM SR D+
Sbjct: 270 LSGQKEDAELDAETASMLVDHGNQQIF----NPQERRMIERVLNLNQRTVSSIMTSRHDI 325
Query: 226 ETIPVDVSIEEALKFAIKKGHTRFPII-AKTKDDILGYVTLQNLIKEYLTAPGQEIKKIM 284
E I ++ EE + + HTR + +D+LG V + +L+++ L ++ ++
Sbjct: 326 EHIDLNAPEEEIRQLLERNQHTRLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLI 385
Query: 285 QEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQD--EED 342
++P++F +T+P+ L + + HFA ++DE+G G+VT+ D+ E + G++ + EE
Sbjct: 386 RQPLVFPETLPLLPALEQFRNARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEI 445
Query: 343 HEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVG 402
+ + K + ++ +G + L + + + L + TI+G + Y +P E
Sbjct: 446 DARHDIQKNADGSWTANGHMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEV 505
Query: 403 QTFEF 407
Q ++
Sbjct: 506 QVGDY 510
sp|Q48445|YC19_KLEPN HYPOTHETICAL PROTEIN IN CPS REGION (ORF19)
>gi|4433266|dbj|BAA21009| (D21242) ORF19 [Klebsiella
pneumoniae]
Length = 320
Score = 86.6 bits (211), Expect = 4e-16
Identities = 48/198 (24%), Positives = 99/198 (49%), Gaps = 3/198 (1%)
Query: 197 NEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIA-KT 255
N +E + V + IM SR D+E I + EE K HTR + K
Sbjct: 99 NPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVVTGGKD 158
Query: 256 KDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLD 315
+D+LG V + +L+++ L +++ ++++P++F + +P+ L + ++ HFA ++D
Sbjct: 159 NEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVD 218
Query: 316 EYGGTSGLVTIEDILEELVGDIQD--EEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNI 373
E+G G+VT+ D++E + G++ + EE + + ++ V+G + L + + +
Sbjct: 219 EFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPL 278
Query: 374 DLAQNNLSKTISGFITNY 391
L T++G + Y
Sbjct: 279 PLDDKREYHTVAGLLMEY 296
gb|AAC67849.1| (AE001298) Hypothetical protein containing CBS domains [Chlamydia
trachomatis]
Length = 414
Score = 66.3 bits (159), Expect = 5e-10
Identities = 66/311 (21%), Positives = 133/311 (42%), Gaps = 22/311 (7%)
Query: 115 VVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEG 174
+V+GE++PK ++I + + P+ + T F + + + S I + LA +
Sbjct: 100 LVLGEIVPKVIAIPYNARIA-KIVTPI--IFASTKSFRPIFDWAISGINFIVQKMLARQE 156
Query: 175 DEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSI 234
+ +EL + G +N +E L ++ K+ M + ++ V I
Sbjct: 157 SDFIQPQELKEVLRSCKDFGVVNHEESRLLFGYLSMEEGSIKERMTPKQEIIFYDVLTPI 216
Query: 235 EEALKF--AIKKGHTRFPIIAKTKDDILGYVTLQNLI--KEYLTAPGQEIKKIMQEPIIF 290
E K K+ +++ + ++LG + + L+ KE L + +E+ ++++P
Sbjct: 217 ENLYKLFSGPKQSYSKVLVCKGGLQNLLGVCSAKLLLLYKEKLQS-AEELLPLLRKPHYI 275
Query: 291 IDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELV-- 348
+T+ K L + E I++DEYG GL+T D+ + + + K+
Sbjct: 276 PETVSAKTALYHLAGEDCGLGIIIDEYGSIEGLITQNDLFKIVSDGVAHNRPSFKQFAHS 335
Query: 349 ---IKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTF 405
+ ++ TY+ LS+F +LF +DL TI G++T + E E G F
Sbjct: 336 DKNVVIAAGTYE------LSDFYDLFGVDLPTTANCVTIGGWLTE---QLGEIPETGTKF 386
Query: 406 EFDNLKITIIE 416
+ I++
Sbjct: 387 AWGQFVFQILD 397
gb|AAD15464.1| (AC006067) hypothetical protein [Arabidopsis thaliana]
Length = 408
Score = 64.8 bits (155), Expect = 1e-09
Identities = 52/236 (22%), Positives = 106/236 (44%), Gaps = 32/236 (13%)
Query: 115 VVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEG 174
++ GE+IP+S+ + TVA + + P W ++ + + F A +G
Sbjct: 116 LLFGEIIPQSVCSRHGLAIGATVAPFVRVLVWICLPVAWPISKPNNVACQFFQ---AGKG 172
Query: 175 DEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSI 234
E+ +E I+ E + +AKD M D I ++ +
Sbjct: 173 GELTHDETTIIAG-------------------ALELSEKMAKDAMTPISDTFVIDINAKL 213
Query: 235 E-EALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLI----KEYLTAPGQEIKKIMQEPII 289
+ + + + KGH+R P+ + + +I+G V ++NL+ E + I++I + P
Sbjct: 214 DRDLMNLILDKGHSRVPVYYEQRTNIIGLVLVKNLLTINPDEEIQVKNVTIRRIPRVP-- 271
Query: 290 FIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEK 345
+T+P+ +L+E QK H H A+++ + L + D E V +++ + D+E+
Sbjct: 272 --ETLPLYDILNEFQKGHSHMAVVVRQCDKIHPLQS-NDAANETVNEVRVDVDYER 324
sp|P76262|YOAE_ECOLI HYPOTHETICAL 56.5 KD PROTEIN IN SDAA-MANX INTERGENIC REGION
>gi|1736453|dbj|BAA15623| (D90825) ORF_ID:o334#8;
similar to [SwissProt Accession Number P43932]
[Escherichia coli] >gi|1736460|dbj|BAA15628| (D90826)
ORF_ID:o334#8; similar to [SwissProt Accession Number
P43932] [Escherichia coli] >gi|1788119 (AE000276)
putative transport protein [Escherichia coli]
Length = 518
Score = 62.5 bits (149), Expect = 7e-09
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 11/227 (4%)
Query: 193 KGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPII 252
+G E+E +N V + IM R ++ + ++ ++E + + H+ FP+
Sbjct: 278 EGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPVC 337
Query: 253 AKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEP--IIFIDTIPVKLLLSEMQKEHKHF 310
D+I+G V + L+ G ++ I II +T+ LL +++ F
Sbjct: 338 RGELDEIIGIVRAKELL--VALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGSF 395
Query: 311 AILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEEL 370
I+ +E+G GLVT D+LE + G+ D ++ + I + V G L ++
Sbjct: 396 VIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPE---IITDGDGWLVKGGTDLHALQQA 452
Query: 371 FNID-LAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIE 416
+++ LA ++ T++G + S + P VG + L ITIIE
Sbjct: 453 LDVEHLADDDDIATVAGLV--ISANGHIP-RVGDVIDVGPLHITIIE 496
gi|1788966 (AE000347) putative transport protein [Escherichia coli]
Length = 227
Score = 60.9 bits (145), Expect = 2e-08
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 9/192 (4%)
Query: 217 DIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQN---LIKEYL 273
DIMV R ++ I ++ + L+ H R + + DD + + ++ L+ E
Sbjct: 5 DIMVPRSEIIGIDINDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKK 64
Query: 274 TAPGQEIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEEL 333
+ + + E + P+ L + Q+ K ++++EYG GLVT+EDILEE+
Sbjct: 65 EFTKETMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEI 124
Query: 334 VGDIQDEEDHE-KELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYS 392
VGD E V + + +DG + E + FN L +++ ++T++G I
Sbjct: 125 VGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDD-ARTVNGVI---- 179
Query: 393 LEQNEPLEVGQT 404
LE E + V T
Sbjct: 180 LEALEEIPVAGT 191
emb|CAA20583.1| (AL031394) putative protein [Arabidopsis thaliana]
Length = 411
Score = 60.5 bits (144), Expect = 3e-08
Identities = 51/235 (21%), Positives = 102/235 (42%), Gaps = 20/235 (8%)
Query: 115 VVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEG 174
++ GE+IP+S+ + TVA + + P W I KL + L
Sbjct: 96 LLFGEIIPQSICSRYGLAIGATVAPFVRVLVFICLPVAW-------PISKLLDFLLGHRR 148
Query: 175 DEIHSEEELILIA----NQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPV 230
+ EL + N++ GE+ E + E + + KD M D+ I +
Sbjct: 149 AALFRRAELKTLVDFHGNEAGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDI 208
Query: 231 DVSIE-EALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLI----KEYLTAPGQEIKKIMQ 285
+ ++ + + ++KGH+R P+ + +I+G V ++NL+ E + I++I +
Sbjct: 209 NAKLDRDLMNLILEKGHSRVPVYYEQPTNIIGLVLVKNLLTINPDEEIPVKNVTIRRIPR 268
Query: 286 EPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDE 340
P + +P+ +L+E QK H A+++ + L + ++E D+ E
Sbjct: 269 VP----EILPLYDILNEFQKGLSHMAVVVRQCDKIHPLPSKNGSVKEARVDVDSE 319
gb|AAD31439.1|AF130857_3 (AF130857) CorB [Salmonella typhimurium]
Length = 227
Score = 58.9 bits (140), Expect = 8e-08
Identities = 54/210 (25%), Positives = 99/210 (46%), Gaps = 14/210 (6%)
Query: 217 DIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAP 276
DIMV R ++ I ++ + + H R + + DD + + ++ + L A
Sbjct: 5 DIMVPRNEIIGIDINDDWKSIERQLTHSPHGRIVLYRDSLDDAISMLRVREAWR--LMAE 62
Query: 277 GQEIKKIMQ----EPIIFI-DTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILE 331
+E K M + I ++ + P+ L + Q+ K ++++EYG GLVT+EDILE
Sbjct: 63 KKEFTKEMMLRAADEIYYVPEGTPLSTQLIKFQRNKKKVGLVVNEYGDIQGLVTVEDILE 122
Query: 332 ELVGDIQDEEDHE-KELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITN 390
E+VGD E V + + +DG + E + FN L +++ ++T++G I
Sbjct: 123 EIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDD-ARTVNGVI-- 179
Query: 391 YSLEQNEPLEV-GQTFEFDNLKITIIEMDK 419
LE E + V G + I I+++ +
Sbjct: 180 --LEALEEIPVAGTRVRIEQYDIDILDVQE 207
gb|AAC67850.1| (AE001298) hypothetical protein [Chlamydia trachomatis]
Length = 404
Score = 58.2 bits (138), Expect = 1e-07
Identities = 80/417 (19%), Positives = 157/417 (37%), Gaps = 40/417 (9%)
Query: 5 LFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
L + +L IF+ FF E + + + RL+ ++NK+A +V LG
Sbjct: 10 LGVNLLCIFVQGFFSMMEMACISFNRVRLQYYLTKSNKKASYINFLVRRPYRLFGTVMLG 69
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
+ + +L IG T + +L Y + V+ ELIP +
Sbjct: 70 VNI-ALQIGSESSRTCYKLLGISPEYAPATQI---------------ILVVIFAELIPLA 113
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
+S E + L A L++ + L YP + + + I + N+ T + S +EL
Sbjct: 114 ISRKIPEKIALKGAPILYFAHYLFYPLIQCVGGITNMIYFILNIKEETLHSTL-SRDEL- 171
Query: 185 LIANQSFIKGEINEKEYEYL-NNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIK 243
Q ++ E ++ + N+F + + + + S+ + + +
Sbjct: 172 ----QKTLETHHEEHDFNVIATNIFSLSATSVEQVCQYLDQIPILSATASVRDVCQLVRR 227
Query: 244 KGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPIIFIDTIPVKLLLSEM 303
P+ K K +++G +NLI P + + P + + E
Sbjct: 228 HRLDFVPVYHKVKKNVVGIAFPKNLINR---NPSDPVVPYLSSPWFITAKSKLIHAIQEF 284
Query: 304 QKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTTY---QVDG 360
+K + AI+L+ G G++ + + + L + +K PT+ G
Sbjct: 285 RKNSSNVAIVLNNNGEPMGVLGLHTVFKTLFNTRNIAQ-------LKPKPTSLIERTFSG 337
Query: 361 KLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITIIEM 417
LSE E +I N+ + TI + + P EVG + ++L + + E+
Sbjct: 338 NTPLSEIENELDIIFMDNDCT-TIEQLMLKL---LDTPPEVGASIIINDLLLEVKEI 390
gi|1788965 (AE000347) orf, hypothetical protein [Escherichia coli]
Length = 196
Score = 57.8 bits (137), Expect = 2e-07
Identities = 45/205 (21%), Positives = 91/205 (43%), Gaps = 16/205 (7%)
Query: 5 LFIIVLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLG 64
+ I+++M+ ++A+F +E ++ + + RL + K+ N+ AK ++ D +S +G
Sbjct: 2 IIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIG 61
Query: 65 ITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKS 124
L ++ +G +I+ L TFV +V E++PK+
Sbjct: 62 NNLVNILASALG-----TIVGMRL---------YGDAGVAIATGVLTFVVLVFAEVLPKT 107
Query: 125 LSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELI 184
++ E V + L L P VWLLNA + ++ + S+EEL
Sbjct: 108 IAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELR 167
Query: 185 LIANQSFIKGEINEKEYEYLNNVFE 209
I ++S + +I+ + + L +V +
Sbjct: 168 TIVHES--RSQISRRNQDMLLSVLD 190
gb|AAD18538| (AE001623) CT257 hypothetical protein [Chlamydia pneumoniae]
Length = 404
Score = 54.3 bits (128), Expect = 2e-06
Identities = 79/422 (18%), Positives = 163/422 (37%), Gaps = 58/422 (13%)
Query: 9 VLMIFLTAFFVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQLGITLT 68
++ I L F+ E + V + RL+ +++K+A+ ++ LG+ +
Sbjct: 13 IICIVLQGFYSMMEMACVSFNRVRLQYYLTKDHKKARYINFLIRRPYRLFGTVMLGVNI- 71
Query: 69 SLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPKSLSIT 128
+L +G + L Y F+ V+ EL+P ++S
Sbjct: 72 ALQVGSESSRNCYRALGITPDYAPFTQI---------------FIVVIFAELLPLTISRK 116
Query: 129 KTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEELILIAN 188
E + L A L+Y + + YP + L+ + + L N I E+ ++
Sbjct: 117 IPEKLALWGAPILYYSHYIFYPLIQLIGSLTEGLYYLLN---------IRKEKLNSTLSR 167
Query: 189 QSFIKG-EINEKEYEY---LNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKK 244
F K E + +E ++ N+F A + + +P ++++ + IK
Sbjct: 168 DEFQKALETHHEEQDFNTIATNIFSLSATCADQVCQPLEQVTMLPSSANVKDFCR-TIKN 226
Query: 245 GHTRF-PIIAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQEPII------FIDTIPVK 297
F P+ K + +++G + P + K + EP+I + T K
Sbjct: 227 TDINFIPVYHKARKNVIG-----------IAHPKDFVNKALDEPLINNLHSPWFITAKSK 275
Query: 298 L--LLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEELVGDIQDEEDHEKELVIKLSPTT 355
L +L E + A++L+ G G++++ I + L H K I + T
Sbjct: 276 LIRILKEFRDNRSSVAVVLNASGEPIGILSLNAIFKILFNTTNIA--HLKPKTISVIERT 333
Query: 356 YQVDGKLLLSEFEELFNIDLAQNNLSKTISGFITNYSLEQNEPLEVGQTFEFDNLKITII 415
+ G + + ++ +I Q + +T++ + + P EVG + +NL + +
Sbjct: 334 F--PGNSRIKDLQKELDIQFPQYPV-ETLAQLVLQL---LDSPAEVGTSVIINNLLLEVK 387
Query: 416 EM 417
EM
Sbjct: 388 EM 389
gb|AAF33142.1|AF196836_1 (AF196836) putative hemolysin [Candida glabrata]
Length = 508
Score = 51.5 bits (121), Expect = 1e-05
Identities = 58/244 (23%), Positives = 113/244 (45%), Gaps = 23/244 (9%)
Query: 111 TFVHVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSL 170
T + VV GE+IP+S+ + L V A +F ++L+ A I L + L
Sbjct: 148 TILIVVFGEIIPQSICVKYG----LEVGA---FFAPFVLVLMYLMYPVAYPIALLLDYIL 200
Query: 171 ATEGDEIHSEEEL--ILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETI 228
+ ++ + L ++ +Q+ + E ++ V + D K+IM ++ T+
Sbjct: 201 GEDHGTVYKKSGLKTLVTLHQTMGVERLTTDEVTIISAVLDLKDKKVKEIMTPIENVFTL 260
Query: 229 PVDVSIEE-ALKFAIKKGHTRFPI-IAKTKDDILGYVTLQNLIKEYLTAPGQEIKKIMQE 286
D ++E ++ G +R PI + + +G + ++ LI + ++ I
Sbjct: 261 SADKILDEKTIEEIFNSGFSRIPIHLPNEPMNFIGMLIVRILI----SYDPEDALPISSF 316
Query: 287 PIIFI-DTIPVKL---LLSEMQKEHKHFAILLDEYG---GTSGLVTIEDILEELVG-DIQ 338
P+ + +T P +L+ Q+ H I+ + G G+ G+VT+ED++EEL+G +I
Sbjct: 317 PLATLPETSPNTSCLNILNYFQEGKSHMCIVSERPGSSNGSIGVVTLEDVIEELIGEEIV 376
Query: 339 DEED 342
DE D
Sbjct: 377 DESD 380
gb|AAD31438.1|AF130857_2 (AF130857) CorF [Salmonella typhimurium]
Length = 196
Score = 50.0 bits (117), Expect = 4e-05
Identities = 43/206 (20%), Positives = 90/206 (42%), Gaps = 17/206 (8%)
Query: 5 LFIIVLMIFLTAF-FVAAEFSLVKIRKSRLETLEKENNKRAKLALNIVNHLDSYLSACQL 63
+ I+++M+ ++A+ F +E ++ + + RL + K+ N+ AK ++ D +S +
Sbjct: 1 MIILIIMVVISAYYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLI 60
Query: 64 GITLTSLAIGWVGESTMHSILAPLLSYVXXXXXXXXXXXXXXXXXXXTFVHVVIGELIPK 123
G L ++ +G +I+ L TFV +V E++PK
Sbjct: 61 GNNLVNILASALG-----TIVGMRL---------YGDAGLAIATGVLTFVVLVFAEVLPK 106
Query: 124 SLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEGDEIHSEEEL 183
+++ E V + L L P VWLLN + ++ + S+E+L
Sbjct: 107 TIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRMMGIKTDIVVSGSLSKEQL 166
Query: 184 ILIANQSFIKGEINEKEYEYLNNVFE 209
I ++S + +I+ + + L +V +
Sbjct: 167 RTIVHES--RSQISRRNQDMLLSVLD 190
gi|3323257 (AE001262) hemolysin, putative [Treponema pallidum]
Length = 357
Score = 50.0 bits (117), Expect = 4e-05
Identities = 50/210 (23%), Positives = 85/210 (39%), Gaps = 42/210 (20%)
Query: 249 FPIIAKTKDDILGYVTLQNLIKEYLT--------------------------------AP 276
FP+ A+T D ++GY ++Q ++ L A
Sbjct: 99 FPVCARTIDAVVGYFSVQRYVRVCLEMERSAGASREQDEQESVASALHVHMEGRRHAHAK 158
Query: 277 GQE-------IKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDI 329
GQ I +I+Q+PI + I V+ LL Q+ A ++DEYGG G+VT +++
Sbjct: 159 GQGVWIADPVIARIVQQPIFVPEVISVRKLLHLFQQMQAQMAFVIDEYGGIEGMVTRDEL 218
Query: 330 LEELVGDIQDEEDHEKELVIKLSPTTYQVDGKLLLSEFEELFNIDLAQNNLSKTISGFIT 389
+ V + + E + ++ V G + L+E L LA+ T I
Sbjct: 219 IMRCVQEYARADGINSEDCFQNPDGSWIVSGWMNLNEMYRLG--VLARTTRPHTGVHTIA 276
Query: 390 NYSLE-QNEPLEVGQTFEFDNLKITIIEMD 418
Y L +N V + + + TI++MD
Sbjct: 277 GYVLSIRNRIPRVKEQLNANGCRFTILKMD 306
gi|1109915 (U41548) weak similarity to hemolysins [Caenorhabditis elegans]
Length = 500
Score = 47.3 bits (110), Expect = 3e-04
Identities = 58/252 (23%), Positives = 106/252 (42%), Gaps = 31/252 (12%)
Query: 115 VVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSLATEG 174
VV GE+IP++L + + L YP W + S + +F T
Sbjct: 239 VVFGEIIPQALCVKLGLPIGARTIPITQVLLFLMYPLTWPI----SKVLDIFLKEELTRS 294
Query: 175 DEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPVDVSI 234
E + E++ ++ +S I G+ +E ++ + E D M D+ +P +++
Sbjct: 295 LERNKLVEMLKLSEKSIIGGQSDE--FKMVLGALELYDKTVAHAMTRYEDIFMLPHTLTL 352
Query: 235 EEALKFAI-KKGHTRFPII-AKT------KDDILGYVTLQNLIKEYLTAPGQEIKKIMQE 286
+ I G+TR PI +KT DD V L +K+ + +M+
Sbjct: 353 GAGMVTQILDMGYTRIPIYESKTFGGESLNDDRKNIVALL-FVKDLALLDPDDNHNVMKI 411
Query: 287 PIIF-------IDTIPVKLLLSEMQKEHKHFAIL--------LDEYGGTSGLVTIEDILE 331
I+ + +P++ +L E ++ H A++ D GL+T+EDI+E
Sbjct: 412 ASIYNHEVRRVLVDMPLRNMLEEFKRGEYHMALVERLVEQEDKDPIYELCGLITLEDIIE 471
Query: 332 ELVG-DIQDEED 342
E++ +I DE D
Sbjct: 472 EIIQCEIIDETD 483
pir||S72589 B1937_F1_22 protein - Mycobacterium leprae >gi|466971 (U00016)
B1937_F1_22 [Mycobacterium leprae]
Length = 103
Score = 47.3 bits (110), Expect = 3e-04
Identities = 21/73 (28%), Positives = 41/73 (55%)
Query: 204 LNNVFEFDDLIAKDIMVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYV 263
+ +VFE DD + +++MV + M I D+S + A++ GH+ P+I + +I+G
Sbjct: 2 IESVFELDDTLVREMMVPSIAMIWIESDMSATQVTTLAVRSGHSHIPVIGENVYNIVGVF 61
Query: 264 TLQNLIKEYLTAP 276
L++L++ P
Sbjct: 62 YLRDLVQHTFFFP 74
sp|Q57837|Y392_METJA HYPOTHETICAL PROTEIN MJ0392 >gi|2128005|pir||H64348 hypothetical
protein homolog MJ0392 - Methanococcus jannaschii
>gi|1592287 (U67492) conserved hypothetical protein
[Methanococcus jannaschii]
Length = 339
Score = 46.1 bits (107), Expect = 6e-04
Identities = 41/175 (23%), Positives = 85/175 (48%), Gaps = 16/175 (9%)
Query: 159 ASSIGKLFNLSLATEGDEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDI 218
A++IGK L + G + S ++++ + G E + +F+ ++ AKDI
Sbjct: 170 AANIGKSLALIMLLFG--LLSMNIILILVSLFVYFGAEQESRVVEVETIFK--NIKAKDI 225
Query: 219 MVSRLDMETIPVDVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQ 278
M + + D+SIEE L F +K + +P++ K ++G + + N+ K+ T
Sbjct: 226 MTP--NPVYVTPDMSIEEFLDFMLKHKYFGYPVVENGK--LVGCIGIGNIHKKEGT---- 277
Query: 279 EIKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEEL 333
++ M++P++ + +K +L +M + F + E G G+++ DIL +
Sbjct: 278 -VRDYMEKPVVVSEDTDIKEILRKMANTDRVFVV---EGGKLKGIISKTDILRAM 328
ref|NP_014581.1|AMI3| Ami3p >gi|2132836|pir||S61717 probable membrane protein YOL060c -
yeast (Saccharomyces cerevisiae)
>gi|984180|emb|CAA62524| (X91067) 01216; hypothetical
protein [Saccharomyces cerevisiae]
>gi|1419875|emb|CAA99069| (Z74802) ORF YOL060c
[Saccharomyces cerevisiae]
Length = 706
Score = 44.1 bits (102), Expect = 0.002
Identities = 52/244 (21%), Positives = 109/244 (44%), Gaps = 23/244 (9%)
Query: 111 TFVHVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSL 170
T + V+ GE+IP+S+ + L V A +F ++L+ A I L + L
Sbjct: 156 TILIVIFGEIIPQSVCVKYG----LQVGA---FFCPFVLVLMYLMYPVAYPIATLLDYML 208
Query: 171 ATEGDEIHSEEELILIANQSFIKG--EINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETI 228
+ ++ + L + G + + E ++ V + ++IM ++ T+
Sbjct: 209 GEDHGTMYKKSGLKTLVTLHRTMGVERLTKDEVTIISAVLDLKAKRVEEIMTPIENVFTM 268
Query: 229 PVDVSIEE-ALKFAIKKGHTRFPIIAKTK-DDILGYVTLQNLIKEYLTAPGQEIKKIMQE 286
D +++ ++ G +R PI + ++ +G + L++ ++ + I
Sbjct: 269 SADTILDDKTVEKIFNSGFSRIPIFLPNEPNNFIGML----LVRVLISYDPDDCLPISHF 324
Query: 287 PIIFI-DTIPVKL---LLSEMQKEHKHFAILLDEYG---GTSGLVTIEDILEELVG-DIQ 338
P+ + +T P +L+ Q+ H ++ E G G G++T+ED++EEL+G +I
Sbjct: 325 PLATLPETSPNTSCLNILNYFQEGKAHMCVVSKEPGSSHGAIGVLTLEDVIEELIGEEIV 384
Query: 339 DEED 342
DE D
Sbjct: 385 DESD 388
gi|3322284 (AE001188) hemolysin, putative [Treponema pallidum]
Length = 453
Score = 42.2 bits (97), Expect = 0.008
Identities = 48/245 (19%), Positives = 92/245 (36%), Gaps = 23/245 (9%)
Query: 111 TFVHVVIGELIPKSLSITKTEGVVLTVAAPLHYFYKLTYPFVWLLNASASSIGKLFNLSL 170
T V ++ GE+ PK+L + G ++ +A L Y L YP + +A + +F
Sbjct: 100 TCVIILCGEMFPKALGARYSLGFLMWIAPFLQLSYWLLYPCACVSSALMHVLEGIFLPRH 159
Query: 171 ATEGDEIHSEEELILIANQSFIKGEINEKEYEYLNNVFEFDDLIAKDIMVSRLDMETIPV 230
T S EE+ + +G I+ E + +F + +MV ++
Sbjct: 160 TT----CLSREEIKTLIAVGAREGVISSTENQLFQRALQFKRIPLAHVMVPHTHFVSVFQ 215
Query: 231 DVSIEEALKFAIKKGHTRFPIIAKTKDDILGYVTLQNLIKEYLTAPGQE----------- 279
D + A + ++ + G+V ++ E P Q
Sbjct: 216 DTPLSHVWD-AFRTCSFSQLLVHDAAGIVWGFVHYWDIFGESKVLPSQSSDQMVSACVAN 274
Query: 280 -------IKKIMQEPIIFIDTIPVKLLLSEMQKEHKHFAILLDEYGGTSGLVTIEDILEE 332
+ + QE + + +L + + A+++DE G GLVT+ DI+E
Sbjct: 275 TRAAVHRVGDLAQELCCVPNVADLFSVLDMLSVSKQQMALVVDERGDGEGLVTMTDIMEV 334
Query: 333 LVGDI 337
+ G +
Sbjct: 335 IFGSL 339
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.320 0.139 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105312962
Number of Sequences: 457798
Number of extensions: 4238802
Number of successful extensions: 14467
Number of sequences better than 1.0e-02: 73
Number of HSP's better than 0.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 14275
Number of HSP's gapped (non-prelim): 78
length of query: 430
length of database: 140,871,481
effective HSP length: 59
effective length of query: 371
effective length of database: 113,861,399
effective search space: 42242579029
effective search space used: 42242579029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 97 (42.2 bits)