Score E
Sequences producing significant alignments: (bits) Value
gi|1147744 (U42211) PBP 5 synthesis repressor [Enterococcus... 146 3e-34
pir||S54177 PSR protein - Enterococcus faecium >gi|790435|e... 113 4e-24
emb|CAA48843| (X69092) psrfm [Enterococcus hirae] 111 9e-24
gb|AAD26696.1|AF117609_2 (AF117609) putative pbp5 repressor... 107 2e-22
pir||S57618 pbp5-control factor psr - Enterococcus hirae (A... 75 1e-12
emb|CAA48606| (X68646) penicillin binding protein repressor... 74 2e-12
emb|CAA19232| (AL023702) putative transcriptional regulator... 71 1e-11
sp|Q02115|LYTR_BACSU MEMBRANE-BOUND PROTEIN LYTR >gi|477020... 68 1e-10
emb|CAA20411| (AL031317) putative transcriptional regulator... 67 4e-10
gi|1762327 (U56901) putative transcriptional regulator [Bac... 62 1e-08
emb|CAB52244.1| (Z98171) EpsA [Streptococcus thermophilus] 61 2e-08
gi|3170566 (AF058302) FrnA [Streptomyces roseofulvus] 61 2e-08
dbj|BAA17607| (D90907) regulation of penicillin binding pro... 61 3e-08
gi|3411118 (AF053346) EpsA [Streptococcus thermophilus] 60 5e-08
emb|CAB36983.2| (Y17241) CpsX protein [Streptococcus agalac... 59 6e-08
dbj|BAA18222| (D90912) membrane bound protein LytR [Synecho... 59 6e-08
emb|CAB36981| (Y17218) CpsX protein [Streptococcus agalacti... 59 8e-08
emb|CAB36978.1| (Y17221) CpsX protein [Streptococcus agalac... 59 8e-08
emb|CAA17628.1| (AL022004) hypothetical protein Rv0822c [My... 59 1e-07
emb|CAB15601.2| (Z99122) an in-frame TGA stop codon is foun... 58 1e-07
gi|1276874 (U40830) EpsA [Streptococcus thermophilus] >gi|1... 58 1e-07
gb|AAF11053.1|AE001993_3 (AE001993) membrane-bound protein ... 55 9e-07
emb|CAB43604.1| (AJ239004) cap8A [Streptococcus pneumoniae] 54 2e-06
gb|AAD10170.1| (AF026471) Cps2A [Streptococcus pneumoniae] 54 3e-06
emb|CAB05934| (Z83335) unknown [Streptococcus pneumoniae] 54 3e-06
gb|AAD36928.1|AE001823_10 (AE001823) membrane bound protein... 53 4e-06
emb|CAB59287.1| (AJ131984) cap37A [Streptococcus pneumoniae] 53 5e-06
emb|CAA07394| (AJ006986) cap33fA [Streptococcus pneumoniae] 53 5e-06
gb|AAD53065.1|AF163833_2 (AF163833) CpsX [Streptococcus aga... 53 6e-06
gi|3818482 (AF057294) Cps23fA [Streptococcus pneumoniae] 53 6e-06
gi|2804769 (AF030373) putative regulatory protein [Streptoc... 53 6e-06
emb|CAA59785| (X85787) capsular polysaccharide synthesis pr... 53 6e-06
gi|2804747 (AF030369) putative regulatory protein [Streptoc... 52 1e-05
gi|2804735 (AF030367) putative regulatory protein [Streptoc... 52 1e-05
gi|485275 (U09239) putative regulatory protein [Streptococc... 52 1e-05
gb|AAC78663.1| (AF094575) putative regulatory protein Cps19... 50 5e-05
emb|CAB06226| (Z83864) hypothetical protein Rv3840 [Mycobac... 49 7e-05
emb|CAB08707| (Z95390) cpsA [Mycobacterium tuberculosis] 46 6e-04
gb|AAD24447.1|AF118389_4 (AF118389) Cps2A [Streptococcus suis] 45 0.001
gb|AAF12120.1|AE002087_3 (AE002087) LytR/CspA/Psr family pr... 45 0.002
gi|1147744 (U42211) PBP 5 synthesis repressor [Enterococcus hirae]
Length = 293
Score = 146 bits (366), Expect = 3e-34
Identities = 104/329 (31%), Positives = 157/329 (47%), Gaps = 62/329 (18%)
Query: 140 FVYGYQRGVKHEGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVN 199
FV+GY V K E K+ +N+ L+G+D R + +G +D++M+ N
Sbjct: 26 FVHGYS-STSRADDVPKVEA----KSVPKIINVALIGSDARSKEENG--RSDSLMIAQYN 78
Query: 200 GKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGI 259
K + ++VS MRD+ V+IP G KIN+A++ G G++L+++TLK NF
Sbjct: 79 QKTKKAKLVSIMRDSYVDIPGHGQD-----KINAAYSYG------GIDLLNQTLKENFKF 127
Query: 260 NCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKD 319
YYA + F F ++ LFP G+ I+A+ D D
Sbjct: 128 ETPYYASITFQDFIDCVNELFPNGVDINAE--------------------------KDLD 161
Query: 320 LTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDEGDYGRVKRQQQVLETV 379
L DG + IK G Q MDG LL YARFR D EGD+GR++RQQQV++ +
Sbjct: 162 L-----------DG----VYIKKGEQTMDGNTLLQYARFREDAEGDFGRIRRQQQVIKAI 206
Query: 380 MSKMKNPLSLFTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE 439
++K+ S+ A+G TN+P S + GI L D K I + ++P W
Sbjct: 207 SKQLKDVTSILKLPKAIGRLLGSIKTNLPESVLIDCGIDFLKDDK-PIDTLSVPVEGSWN 265
Query: 440 -NAYDMYGGLGLSIDMTKYKAKAQELLGQ 467
N Y G + L +D+ K + + L Q
Sbjct: 266 FNDYTPSGSV-LELDLEKNQLAINQFLDQ 293
pir||S54177 PSR protein - Enterococcus faecium >gi|790435|emb|CAA59285|
(X84858) PSR [Enterococcus faecium]
Length = 198
Score = 113 bits (279), Expect = 4e-24
Identities = 77/232 (33%), Positives = 116/232 (49%), Gaps = 59/232 (25%)
Query: 140 FVYGYQRGVKHEGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVN 199
FV+G+ K +V K + K+ ++N+ L+G+D R + +G +D++MV +
Sbjct: 26 FVHGFS-SAKQTSTVKKVDP----KSVPTTLNVALIGSDARSKEENG--RSDSLMVAQYD 78
Query: 200 GKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGI 259
K Q +++S MRD+ V+IP G KIN+A++ G G++L+++TLK NF
Sbjct: 79 QKTQQAKLISIMRDSYVDIPGYGMD-----KINAAYSYG------GIDLLNQTLKENFKF 127
Query: 260 NCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKD 319
YYA + F F ++ LFP G+KIDA+ S DL
Sbjct: 128 EAPYYASITFQDFIDCVNELFPDGVKIDAEKSL-------------DL------------ 162
Query: 320 LTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDEGDYGRVKR 371
DG + IK G Q MDG LL YARFR D+EGD+GR++R
Sbjct: 163 ------------DG----VYIKKGKQVMDGNTLLQYARFREDEEGDFGRIRR 198
emb|CAA48843| (X69092) psrfm [Enterococcus hirae]
Length = 171
Score = 111 bits (276), Expect = 9e-24
Identities = 77/225 (34%), Positives = 112/225 (49%), Gaps = 57/225 (25%)
Query: 150 HEGSVAKQE---KFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQ 206
H S AKQ K K+ ++N+ L+G+D R + +G +D++MV + K Q +
Sbjct: 1 HGFSSAKQTSTVKKVDPKSVPTTLNVALIGSDARSKEENG--RSDSLMVAQYDQKTQQAK 58
Query: 207 IVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAV 266
++S MRD+ V+IP G KIN+A++ G G++L+++TLK NF YYA
Sbjct: 59 LISIMRDSYVDIPGYGMD-----KINAAYSYG------GIDLLNQTLKENFKFEAPYYAS 107
Query: 267 VDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAA 326
+ F F ++ LFP G+KIDA+ S DL
Sbjct: 108 ITFQDFIDCVNELFPDGVKIDAEKSL-------------DL------------------- 135
Query: 327 ALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDEGDYGRVKR 371
DG + IK G Q MDG LL YARFR D+EGD+GR++R
Sbjct: 136 -----DG----VYIKKGKQVMDGNTLLQYARFREDEEGDFGRIRR 171
gb|AAD26696.1|AF117609_2 (AF117609) putative pbp5 repressor PsR [Enterococcus faecium]
Length = 253
Score = 107 bits (264), Expect = 2e-22
Identities = 68/195 (34%), Positives = 96/195 (48%), Gaps = 47/195 (24%)
Query: 229 SKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSLFPTGLKIDA 288
+KIN+A++ G GV+L+++TLK NF YYA + F F ++ LFP G+KIDA
Sbjct: 105 NKINAAYSYG------GVDLLNQTLKENFKFEAPYYASITFQDFIDCVNELFPGGVKIDA 158
Query: 289 KFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGTQKMD 348
+ S DL DG + I G Q MD
Sbjct: 159 EKSL--------------------------DL-----------DG----VYINKGEQVMD 177
Query: 349 GRMLLNYARFRHDDEGDYGRVKRQQQVLETVMSKMKNPLSLFTASSALGTTRAVTMTNIP 408
G LL YARFR D EGD+GR++RQQQV++ + ++K+ S+F A+G TN+P
Sbjct: 178 GNTLLQYARFREDKEGDFGRIRRQQQVIKAISQQLKDVTSIFKLPKAVGKLLGSIQTNLP 237
Query: 409 NSFFLTKGITALLDM 423
S L G+ L D+
Sbjct: 238 ESVLLDCGMDFLKDI 252
pir||S57618 pbp5-control factor psr - Enterococcus hirae (ATCC 9790)
>gi|886480|emb|CAA59276| (X84818) psr [Enterococcus
hirae]
Length = 151
Score = 74.9 bits (181), Expect = 1e-12
Identities = 47/143 (32%), Positives = 75/143 (51%), Gaps = 18/143 (12%)
Query: 140 FVYGYQRGVKHEGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVN 199
FV+GY V K E K+ +N+ L+G+D R + +G +D++M+ N
Sbjct: 26 FVHGYS-STSRADDVPKVEA----KSVPKIINVALIGSDARSKEENG--RSDSLMIAQYN 78
Query: 200 GKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGI 259
K + ++VS MRD+ V+IP G KIN+A++ G G++L+++TLK NF
Sbjct: 79 QKTKKAKLVSIMRDSYVDIPGHGQD-----KINAAYSYG------GIDLLNQTLKENFKF 127
Query: 260 NCQYYAVVDFSSFATIIDSLFPT 282
YYA + F F ++ LF T
Sbjct: 128 ETPYYASITFQDFIDCVNELFLT 150
emb|CAA48606| (X68646) penicillin binding protein repressor [Enterococcus hirae]
Length = 148
Score = 74.1 bits (179), Expect = 2e-12
Identities = 46/141 (32%), Positives = 74/141 (51%), Gaps = 18/141 (12%)
Query: 140 FVYGYQRGVKHEGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVN 199
FV+GY V K E K+ +N+ L+G+D R + +G +D++M+ N
Sbjct: 26 FVHGYS-STSRADDVPKVEA----KSVPKIINVALIGSDARSKEENG--RSDSLMIAQYN 78
Query: 200 GKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGI 259
K + ++VS MRD+ V+IP G KIN+A++ G G++L+++TLK NF
Sbjct: 79 QKTKKAKLVSIMRDSYVDIPGHGQD-----KINAAYSYG------GIDLLNQTLKENFKF 127
Query: 260 NCQYYAVVDFSSFATIIDSLF 280
YYA + F F ++ LF
Sbjct: 128 ETPYYASITFQDFIDCVNELF 148
emb|CAA19232| (AL023702) putative transcriptional regulator [Streptomyces
coelicolor]
Length = 366
Score = 71.4 bits (172), Expect = 1e-11
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 50/223 (22%)
Query: 171 NILLLGADQRPWQSSGV-------AHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGS 223
NIL+LG+D R ++G+ A +DT MV+H+ + VS RDTLV P+
Sbjct: 84 NILVLGSDSRSGDNAGLGTGKVAGARSDTAMVMHIPEGRTEAVAVSIPRDTLVTRPECRK 143
Query: 224 SDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSLFPTG 283
D ++ Y++ G + +T++ GI +Y +DF+ F ++D++
Sbjct: 144 QDGTETAAAKRVMFNSIYSQVGPACVVKTVEQMSGIRMDHYVEIDFAGFKDLVDAIGGVT 203
Query: 284 LKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPG 343
+ +D SS DLTA G
Sbjct: 204 VTVDQDIH---------------------DPSSGLDLTA--------------------G 222
Query: 344 TQKMDGRMLLNYARFRH--DDEGDYGRVKRQQQVLETVMSKMK 384
T K++G L + R RH D D GR+ QQQ + ++S++K
Sbjct: 223 THKLNGTDSLAFVRTRHGVGDGSDLGRIGLQQQFMLALLSEIK 265
sp|Q02115|LYTR_BACSU MEMBRANE-BOUND PROTEIN LYTR >gi|477020|pir||A47679 lyt divergon
expression attenuator LytR - Bacillus subtilis
>gi|143156 (M87645) membrane bound protein [Bacillus
subtilis] >gi|2636091|emb|CAB15582.1| (Z99122)
membrane-bound protein [Bacillus subtilis]
Length = 306
Score = 68.3 bits (164), Expect = 1e-10
Identities = 60/235 (25%), Positives = 103/235 (43%), Gaps = 58/235 (24%)
Query: 156 KQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTL 215
K++K S+ D ++L++G D+R DT++ + VN K + T +VS RDT
Sbjct: 54 KRDKEVSINKKD-PFSVLIMGVDERDGDKG---RADTLIYMTVNPKTNTTDMVSIPRDTY 109
Query: 216 VNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATI 275
I G+ D KIN ++ G G + +T++N + Y+ V+ SF +
Sbjct: 110 TKIIGKGTMD----KINHSYAFG------GTQMTVDTVENFLDVPVDYFVKVNMESFRDV 159
Query: 276 IDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGG 335
+D+L G+ +++ F+ S D GY G G
Sbjct: 160 VDTL--GGITVNSTFA----------------------FSYD-----------GYSFGKG 184
Query: 336 TFMMIKPGTQKMDGRMLLNYARFRHDD-EGDYGRVKRQQQVLETVMSKMKNPLSL 389
++G+ L Y R R +D GD+GR RQ+QV++ +++K N S+
Sbjct: 185 EI--------TLNGKEALAYTRMRKEDPRGDFGRQDRQRQVIQGIINKGANISSI 231
emb|CAA20411| (AL031317) putative transcriptional regulator [Streptomyces
coelicolor]
Length = 360
Score = 66.7 bits (160), Expect = 4e-10
Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 59/283 (20%)
Query: 168 GSVNILLLGADQRPWQS--------SGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIP 219
G++NIL+LG+D R + SG A +DT MV+H++ +VS RDTLV P
Sbjct: 94 GALNILVLGSDSRTGEQNQELGGGDSGGARSDTAMVVHLDAGRTAATVVSIPRDTLVERP 153
Query: 220 DVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSL 279
++ S Y G +T+++ G+ +Y VDFS FA ++D+L
Sbjct: 154 SCPLPSGGTTRAASGAMFNTAYELGGPVCAVKTVESLTGVRMDHYVEVDFSGFADLVDAL 213
Query: 280 FPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMM 339
V++D D+ D + +
Sbjct: 214 GGV------------------------------TVTTDVDI-----------DDDKSHLH 232
Query: 340 IKPGTQKMDGRMLLNYARFRHDDEG--DYGRVKRQQQVLETVMSK------MKNPLSLFT 391
+ GT +DG L AR R+ G D R++ Q ++++ ++ + + +P L+
Sbjct: 233 LDAGTHHLDGTEALGLARTRYGLAGGSDLARIELQHKLVKALLQQVSATDLLTDPAKLYQ 292
Query: 392 ASSALGTTRAVTMTNIPNSFFLTKGITALLDM-KNGIKSTTIP 433
+ AL T T T + + LT +L D+ + +++ T+P
Sbjct: 293 VADAL-TGSLTTDTGLDSLGELTNLGRSLGDLAADDVRTLTMP 334
gi|1762327 (U56901) putative transcriptional regulator [Bacillus subtilis]
>gi|2636078|emb|CAB15569.1| (Z99122) similar to
transcriptional regulator [Bacillus subtilis]
Length = 391
Score = 62.1 bits (148), Expect = 1e-08
Identities = 58/244 (23%), Positives = 107/244 (43%), Gaps = 50/244 (20%)
Query: 190 TDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLM 249
+D+++V+ ++ KN +++S RDT V + G + +KIN+A Y+K G +
Sbjct: 96 SDSLIVVTLDPKNKTMKMLSIPRDTRVQL--AGDTTGSKTKINAA------YSKGGKDET 147
Query: 250 SETLKNNFGINCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAA 309
ET++N I Y VDF F +I+ + G+ +D F
Sbjct: 148 VETVENFLQIPIDKYVTVDFDGFKDVINEV--GGIDVDVPF------------------- 186
Query: 310 TEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDE-GDYGR 368
D+ +E+ + + K G ++G L YAR R D+ GD+GR
Sbjct: 187 -----DFDEKSDVDESKRIYF----------KKGEMHLNGEEALAYARMRKQDKRGDFGR 231
Query: 369 VKRQQQVLETVMSKMKNPLSLFTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIK 428
RQ+Q+L ++ +M + ++ + + N+ + +T+G+ AL + +G
Sbjct: 232 NDRQKQILNALIDRMSSASNI----AKIDKIAEKASENVETNIRITEGL-ALQQIYSGFT 286
Query: 429 STTI 432
S I
Sbjct: 287 SKKI 290
emb|CAB52244.1| (Z98171) EpsA [Streptococcus thermophilus]
Length = 484
Score = 61.3 bits (146), Expect = 2e-08
Identities = 68/304 (22%), Positives = 118/304 (38%), Gaps = 67/304 (22%)
Query: 156 KQEKFTSLKNSDGSV-NILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDT 214
K++ S D V NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 215 KKKNSNSANPVDSKVFNIYISGIDTYG-PISTVSRSDVNIIMTVNMNTHKILLTTTPRDA 273
Query: 215 LVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFAT 274
V IP G +D D ++ GV +TL++ +GI YYA ++F+SF
Sbjct: 274 YVKIPG-GGADQYDKLTHAGI--------YGVETSEQTLEDLYGIKIDYYARINFTSFLK 324
Query: 275 IIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGG 334
+ID L V V +D A T+GK
Sbjct: 325 LID-------------------QLGGVTVHNDQAFTQGKFD------------------- 346
Query: 335 GTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSLFTAS 393
G +M+ L + R R++ D GD R K Q++V+ +++K+ + S+ +
Sbjct: 347 -----FPVGDIQMNSEQALGFVRERYNLDGGDNDRGKNQEKVISAILNKLASLKSVSNFT 401
Query: 394 SALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWENAYDMYGGLGLSID 453
S + + TN+ LD N + +T + + + + G G +
Sbjct: 402 SIVNNLQDSVQTNMS------------LDTINALANTQLDSGSKFTVTSQAVTGTGSTGQ 449
Query: 454 MTKY 457
+ Y
Sbjct: 450 LISY 453
gi|3170566 (AF058302) FrnA [Streptomyces roseofulvus]
Length = 770
Score = 60.9 bits (145), Expect = 2e-08
Identities = 59/254 (23%), Positives = 100/254 (39%), Gaps = 60/254 (23%)
Query: 167 DGSVNILLLGADQRPWQSS-------GVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIP 219
DG +NIL++G D+R + + H DT ++L V+ T +S RD + NIP
Sbjct: 32 DGPINILIIGTDKRTGKGNEGCGGKDSPGHADTNILLRVSADRTNTTGLSIPRDLITNIP 91
Query: 220 DV------GSSDTPDSKINSAF--TIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSS 271
D GS T N F ++G++ G + T+ G+ ++ + DF++
Sbjct: 92 DCLTTQDDGSKKTIPGTQNVRFNTSLGQEGRDPGCTM--RTVTELTGLKVDHFMMADFNA 149
Query: 272 FATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYP 331
+ + VNG + DD P
Sbjct: 150 VKNLT--------------TAVNGVEVCVAKDVDD------------------------P 171
Query: 332 DGGGTFMMIKPGTQKMDGRMLLNYARFRHD--DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
D + + + GT K+ G L + R RH ++GD R+K QQQ L ++ ++K+ +L
Sbjct: 172 D---SHLKLSAGTHKVQGEQALAFVRTRHSFGNQGDLDRIKVQQQFLGSLARQLKSEDTL 228
Query: 390 FTASSALGTTRAVT 403
+ A T
Sbjct: 229 TSPKKLYKVAEAAT 242
dbj|BAA17607| (D90907) regulation of penicillin binding protein 5 production
[Synechocystis sp.]
Length = 481
Score = 60.5 bits (144), Expect = 3e-08
Identities = 58/246 (23%), Positives = 104/246 (41%), Gaps = 57/246 (23%)
Query: 170 VNILLLGAD------QRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGS 223
VNIL++G D + P +DT++++ + + + +++S RDT V IPDVG
Sbjct: 106 VNILVMGIDRVEPTEEEPNVDEFGGRSDTMLLVRFDPRENGLKLLSIPRDTRVFIPDVGY 165
Query: 224 SDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFG-INCQYYAVVDFSSFATIIDSLFPT 282
+ KIN A G G L + + N G + Y V + ++D +
Sbjct: 166 T-----KINDANAYG------GPQLAARVINRNLGEVPIDRYVRVTTDALQELVDLV--G 212
Query: 283 GLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKP 342
G+++ VP P + Y D ++ P
Sbjct: 213 GVEV-------------FVPRP-----------------------MFYEDKTQQLLIDLP 236
Query: 343 -GTQKMDGRMLLNYARFRHDDEGDYGRVKRQQQVLETVMSKMKNPLSLFTASSALGTTRA 401
G Q ++G+ + RFR+D GD GRV+RQ+ +L+ + +++ +P + A+G +
Sbjct: 237 AGLQTLNGQQAEQFVRFRYDANGDIGRVQRQETLLKALQNRLSHPSMITRIPKAIGIMQK 296
Query: 402 VTMTNI 407
TN+
Sbjct: 297 TVDTNL 302
gi|3411118 (AF053346) EpsA [Streptococcus thermophilus]
Length = 408
Score = 59.7 bits (142), Expect = 5e-08
Identities = 67/304 (22%), Positives = 117/304 (38%), Gaps = 67/304 (22%)
Query: 156 KQEKFTSLKNSDGSV-NILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDT 214
K++ S D V NI + G D S + +D +++ VN H+ + + RD
Sbjct: 139 KKKNSNSANPVDSKVFNIYISGIDTYG-PISTASRSDVNIIMTVNMNTHKILLTTTPRDA 197
Query: 215 LVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFAT 274
V IP G +D D ++ GV +TL++ +GI YYA ++F+SF
Sbjct: 198 YVKIPG-GGADQYDKLTHAGI--------YGVETSEQTLEDLYGIKIDYYARINFTSFLK 248
Query: 275 IIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGG 334
+ID L V V +D A T+GK
Sbjct: 249 LID-------------------QLGGVTVHNDQAFTQGKFD------------------- 270
Query: 335 GTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSLFTAS 393
G +M+ L + R R++ D GD R K Q++V+ +++K+ + S+ +
Sbjct: 271 -----FPVGDIQMNSEQALGFVRERYNLDGGDNDRGKNQEKVISAILNKLASLKSVSNFT 325
Query: 394 SALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWENAYDMYGGLGLSID 453
S + + TN+ LD N + +T + + + + G G +
Sbjct: 326 SIVNNLQDSVQTNMS------------LDTINALANTQLDSGSKFTVTSQAVTGTGSTGQ 373
Query: 454 MTKY 457
+ Y
Sbjct: 374 LISY 377
emb|CAB36983.2| (Y17241) CpsX protein [Streptococcus agalactiae]
Length = 485
Score = 59.3 bits (141), Expect = 6e-08
Identities = 59/261 (22%), Positives = 102/261 (38%), Gaps = 64/261 (24%)
Query: 154 VAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRD 213
+ K+ + + +G NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 214 IKKKINRKNTNHKEGVFNIYISGIDTFG-SISTVSRSDVNIIMTVNTNTHKVLLTTTPRD 272
Query: 214 TLVNIPDVGSSDTPDSKINSAFTIGEQYNK------QGVNLMSETLKNNFGINCQYYAVV 267
V IPD G G QY+K GV +TL+N + IN YYA +
Sbjct: 273 AYVKIPDGG---------------GNQYDKLTHAGLYGVETSMQTLENLYDINLDYYARI 317
Query: 268 DFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAA 327
+FSSF +ID L + D F++ +G
Sbjct: 318 NFSSFLKLIDLLGGVTVYNDQAFTSKHGN------------------------------- 346
Query: 328 LGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNP 386
+P G T ++ L + R R+ GD R + Q++V+ +++K+ +
Sbjct: 347 FDFPVGQVT----------LNSEQALGFVRERYSLQGGDNDRGRNQEKVIAAIINKLASS 396
Query: 387 LSLFTASSALGTTRAVTMTNI 407
S+ +S + TN+
Sbjct: 397 QSVTKLNSITSQLQTSVQTNM 417
dbj|BAA18222| (D90912) membrane bound protein LytR [Synechocystis sp.]
Length = 463
Score = 59.3 bits (141), Expect = 6e-08
Identities = 67/278 (24%), Positives = 111/278 (39%), Gaps = 68/278 (24%)
Query: 151 EGSVAKQEKFTSLKNSD-----GSVNILLLGA------DQRPWQSSGVAH---------T 190
+ +V QEK S KN + +N+LLLG + P Q + H T
Sbjct: 67 QAAVFGQEKAVSYKNLNIPQLSRPINVLLLGTKVLTSEEPDPSQPNPGYHALVNSVEGLT 126
Query: 191 DTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMS 250
DT++++ ++ K ++S RDT V IP + KIN A +G G L +
Sbjct: 127 DTMVLIRLDPKEKSLVVLSIPRDTRVEIPGYSGA----RKINQANALG------GPALAA 176
Query: 251 ETLKNNFG-INCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAA 309
T+ + G + Y V+ + +ID+L V VP D+
Sbjct: 177 MTVTDLLGDVPIDRYIRVNVQAVEKLIDALGGVD-----------------VYVPRDMKY 219
Query: 310 TEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDEGDYGRV 369
+ D ++ +K G Q++DG L RFR+D GD GR+
Sbjct: 220 QD--------------------DSQRLYINLKEGQQRLDGEKALQMLRFRYDALGDIGRI 259
Query: 370 KRQQQVLETVMSKMKNPLSLFTASSALGTTRAVTMTNI 407
+RQQ V+ V+ + P ++ + ++ TN+
Sbjct: 260 QRQQIVMRAVVEQALKPQTILRIPDIVKILQSNIDTNL 297
emb|CAB36981| (Y17218) CpsX protein [Streptococcus agalactiae]
>gi|5381178|dbj|BAA82275.1| (AB028896) CpsIaA
[Streptococcus agalactiae]
Length = 485
Score = 58.9 bits (140), Expect = 8e-08
Identities = 59/261 (22%), Positives = 102/261 (38%), Gaps = 64/261 (24%)
Query: 154 VAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRD 213
+ K+ + + +G NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 214 IKKKINRKNTNHKEGVFNIYISGIDTFG-SISTVSRSDVNIIMTVNTNTHKVLLTTTPRD 272
Query: 214 TLVNIPDVGSSDTPDSKINSAFTIGEQYNK------QGVNLMSETLKNNFGINCQYYAVV 267
V IPD G G QY+K GV +TL+N + IN YYA +
Sbjct: 273 AYVKIPDGG---------------GNQYDKLTHAGLYGVETSMKTLENLYDINLDYYARI 317
Query: 268 DFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAA 327
+FSSF +ID L + D F++ +G
Sbjct: 318 NFSSFLKLIDLLGGVTVYNDQAFTSKHGN------------------------------- 346
Query: 328 LGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNP 386
+P G T ++ L + R R+ GD R + Q++V+ +++K+ +
Sbjct: 347 FDFPVGQVT----------LNSEQALGFVRERYSLQGGDNDRGRNQEKVIAAIINKLASS 396
Query: 387 LSLFTASSALGTTRAVTMTNI 407
S+ +S + TN+
Sbjct: 397 QSVTKLNSITSQLQTSVQTNM 417
emb|CAB36978.1| (Y17221) CpsX protein [Streptococcus agalactiae]
Length = 485
Score = 58.9 bits (140), Expect = 8e-08
Identities = 59/261 (22%), Positives = 102/261 (38%), Gaps = 64/261 (24%)
Query: 154 VAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRD 213
+ K+ + + +G NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 214 IKKKINRKNTNHKEGVFNIYISGIDTFG-SISTVSRSDVNIIMTVNTNTHKVLLTTTPRD 272
Query: 214 TLVNIPDVGSSDTPDSKINSAFTIGEQYNK------QGVNLMSETLKNNFGINCQYYAVV 267
V IPD G G QY+K GV +TL+N + IN YYA +
Sbjct: 273 AYVKIPDGG---------------GNQYDKLTHAGLYGVETSMKTLENLYDINLDYYARI 317
Query: 268 DFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAA 327
+FSSF +ID L + D F++ +G
Sbjct: 318 NFSSFLKLIDLLGGVTVYNDQAFTSKHGN------------------------------- 346
Query: 328 LGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNP 386
+P G T ++ L + R R+ GD R + Q++V+ +++K+ +
Sbjct: 347 FDFPVGQVT----------LNSEQALGFVRERYSLQGGDNDRGRNQEKVIAAIINKLASS 396
Query: 387 LSLFTASSALGTTRAVTMTNI 407
S+ +S + TN+
Sbjct: 397 QSVTKLNSITSQLQTSVQTNM 417
emb|CAA17628.1| (AL022004) hypothetical protein Rv0822c [Mycobacterium
tuberculosis]
Length = 684
Score = 58.6 bits (139), Expect = 1e-07
Identities = 60/261 (22%), Positives = 102/261 (38%), Gaps = 81/261 (31%)
Query: 168 GSVNILLLGADQRPW----------QSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVN 217
G N LL+G D R + +G A +DT+M++++ + VSF RD +
Sbjct: 223 GDENFLLVGMDSRAGANANIGAGDAEDAGGARSDTVMLVNIPASRERVVAVSFPRDLAIT 282
Query: 218 I-------PDVGSSDT---------------PDSKINSAFTIGEQYNKQGVNLMSETLKN 255
P+ G ++K+NSAF+ G G + + ++
Sbjct: 283 PIQCEAWNPETGKYGPIYDEKTGTMGPRLVYTETKLNSAFSFG------GPKCLVKVIQK 336
Query: 256 NFGINCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVS 315
G++ + +DF FA ++++L G+++ S P+ D T
Sbjct: 337 LSGLSINRFIAIDFVGFARMVEAL--GGVEV-----------CSTTPLRDYELGT----- 378
Query: 316 SDKDLTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRH---DDEGDYGRVKRQ 372
++ G Q +DG LNY R R + GDYGR+KRQ
Sbjct: 379 ----------------------VLEHAGRQVIDGPTALNYVRARQVTTESNGDYGRIKRQ 416
Query: 373 QQVLETVMSKMKNPLSLFTAS 393
Q L +++ M + +LF S
Sbjct: 417 QLFLSSLLRSMISTDTLFNLS 437
emb|CAB15601.2| (Z99122) an in-frame TGA stop codon is found after Leu-225
(readthrough or pseudogene?); similar to transcriptional
regulator [Bacillus subtilis]
Length = 322
Score = 58.2 bits (138), Expect = 1e-07
Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 52/241 (21%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGV--AHTDTIMVLHVNGKNHQTQIV 208
E SV + ++F K+S ++LLLG D R V A +D +++ N K +++
Sbjct: 58 EQSVKRIKEFDPGKDS---FSVLLLGIDAREKNGETVDQARSDANVLVTFNRKEKTAKML 114
Query: 209 SFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVD 268
S RD VNIP G FT Y GV+L +T++ I Y +
Sbjct: 115 SIPRDAYVNIPGHG---------YDKFTHAHAYG--GVDLTVKTVEEMLDIPVDYVVESN 163
Query: 269 FSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAAL 328
F++F +++ L G+K+ K V + T+GKV
Sbjct: 164 FTAFEDVVNEL--NGVKVTVKSDKV---------IQQIKKDTKGKV-------------- 198
Query: 329 GYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDEGDYGRVKRQQQVLETVMSKMKNPLS 388
+++ GT +DG L Y R R D D R +RQ +VL ++ K K+ S
Sbjct: 199 ----------VLQKGTHTLDGEEALAYVRTRKAD-SDLXRGQRQMEVLSAIIDKSKSLSS 247
Query: 389 L 389
+
Sbjct: 248 I 248
gi|1276874 (U40830) EpsA [Streptococcus thermophilus]
>gi|1588805|prf||2209356B epsA gene [Streptococcus
thermophilus]
Length = 484
Score = 58.2 bits (138), Expect = 1e-07
Identities = 60/254 (23%), Positives = 102/254 (39%), Gaps = 55/254 (21%)
Query: 156 KQEKFTSLKNSDGSV-NILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDT 214
K++ S D V NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 215 KKKNSNSANQVDSRVFNIYISGIDTYG-PISTVSRSDVNIIMTVNMNTHKILLTTTPRDA 273
Query: 215 LVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFAT 274
V IP G +D D ++ GV +TL++ +GI YYA ++F+SF
Sbjct: 274 YVKIPG-GGADQYDKLTHAGI--------YGVETSEQTLEDLYGIKLDYYARINFTSFLK 324
Query: 275 IIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGG 334
+ID L V V +D A T+ K
Sbjct: 325 LID-------------------QLGGVTVHNDQAFTQEKFD------------------- 346
Query: 335 GTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSLFTAS 393
G +M+ L + R R++ D GD R K Q++V+ +++K+ + S+ +
Sbjct: 347 -----FPVGDIQMNSEQALGFVRERYNLDGGDNDRGKNQEKVISAILNKLASLKSVSNFT 401
Query: 394 SALGTTRAVTMTNI 407
S + + TN+
Sbjct: 402 SIVNNLQDSVQTNM 415
gb|AAF11053.1|AE001993_3 (AE001993) membrane-bound protein LytR [Deinococcus radiodurans]
Length = 389
Score = 55.4 bits (131), Expect = 9e-07
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 64/258 (24%)
Query: 164 KNSDGSVNILLLGAD-------------QRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
++ D +N+LL G D +P SG TDTI++ V + +++S
Sbjct: 38 RHGDKPLNVLLAGVDVNYDEQAPVWPYPAQPEDYSG--RTDTIVLTQVR-PDGTVKLLSI 94
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD+ V I KINSA G G +++ T++ G++ YA++ +
Sbjct: 95 PRDSWVPIAGWSGGW---GKINSANVHG------GPDMLLNTVQALTGVHPDGYALLSLN 145
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
+ + +++ G+ ID VP + Y
Sbjct: 146 ALRAVTEAV--GGVTID---------------VPQRMK---------------------Y 167
Query: 331 PDGGGTFMM-IKPGTQKMDGRMLLNYARFRHDDEGDYGRVKRQQQVLETVMSKMKNPLSL 389
D G + ++PG Q++ G + RFR D+ GD GRV RQQQ L ++++++ P ++
Sbjct: 168 DDNAGHLHIDLQPGRQRLSGEQAEGFLRFRKDNMGDIGRVGRQQQFLTALIAEIRRPANV 227
Query: 390 FTASSALGTTRAVTMTNI 407
+ + A TN+
Sbjct: 228 WKLPKVIAALDANAKTNL 245
emb|CAB43604.1| (AJ239004) cap8A [Streptococcus pneumoniae]
Length = 481
Score = 54.3 bits (128), Expect = 2e-06
Identities = 66/298 (22%), Positives = 121/298 (40%), Gaps = 67/298 (22%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY +++F+
Sbjct: 266 SRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVLLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEVL 395
Query: 390 FTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE-NAYDMYG 446
S+ + + + TN+P I ++D+ N T + + +++ N+ D+ G
Sbjct: 396 KNYSTIINSLQDSIQTNMP--------IETMIDLVN----TQLESGGNYKVNSQDLKG 441
gb|AAD10170.1| (AF026471) Cps2A [Streptococcus pneumoniae]
Length = 481
Score = 53.9 bits (127), Expect = 3e-06
Identities = 59/259 (22%), Positives = 104/259 (39%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + +L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEAL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIINSLQDSIQTNVP 414
emb|CAB05934| (Z83335) unknown [Streptococcus pneumoniae]
Length = 481
Score = 53.9 bits (127), Expect = 3e-06
Identities = 69/298 (23%), Positives = 119/298 (39%), Gaps = 67/298 (22%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADSGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLTDGDRDRGRNQQKVIVAIIQKLTSTEVL 395
Query: 390 FTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE-NAYDMYG 446
SS L + TNIP I ++D+ N T + + +++ N+ D+ G
Sbjct: 396 KNYSSILQGLQDSLQTNIP--------IETMIDLVN----TQLESGGNYKVNSQDLKG 441
gb|AAD36928.1|AE001823_10 (AE001823) membrane bound protein LytR, putative [Thermotoga
maritima]
Length = 457
Score = 53.5 bits (126), Expect = 4e-06
Identities = 61/270 (22%), Positives = 108/270 (39%), Gaps = 68/270 (25%)
Query: 173 LLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGSSDTPDSKIN 232
L+LG D+ + TD I+V ++ K VS RD ++ KIN
Sbjct: 104 LVLGKDK---EIEHTVRTDVIVVGVLDWKKGNLSFVSIPRDLMIE----------GKKIN 150
Query: 233 SAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSLFPTGLKIDAKFST 292
+ YN G+ + + +++ G Y + ++ +F ++D L P +
Sbjct: 151 AI------YNTYGMEKLFQIIESLLGQKPDSYVIFNYEAFKILVDELGPIEV-------- 196
Query: 293 VNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGTQ-KMDGRM 351
+P+++ E DL+ + KPG K++G
Sbjct: 197 ----------IPNEVMFYE-------DLSQN------------LVIDFKPGVPYKLNGEQ 227
Query: 352 LLNYARFRHDDEGDYGRVKRQQQVLETVMSK--MKNPLSLFTASSALGTTRAVTMTNIPN 409
LL Y R+R D GD R++RQ+ VL+ ++SK +NPL + + I
Sbjct: 228 LLAYIRYRKDSMGDLARIERQKDVLKKLLSKALSRNPLEISVLYKKIS-------PYIET 280
Query: 410 SFFLTKGITALLDMKNGIK--STTIPANND 437
L + +T +KN ++ +T+P N D
Sbjct: 281 DIGLPEILTLFSKLKNSVRVSFSTLPYNVD 310
emb|CAB59287.1| (AJ131984) cap37A [Streptococcus pneumoniae]
Length = 481
Score = 53.1 bits (125), Expect = 5e-06
Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKRILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD+ V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDSYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D F+ A T GK Y
Sbjct: 317 SFLKLIDLLGGIDVYNDQGFT----------------AHTNGKY---------------Y 345
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
P+ G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 346 PE----------GNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEEL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIINSLQDSIQTNMP 414
emb|CAA07394| (AJ006986) cap33fA [Streptococcus pneumoniae]
Length = 481
Score = 53.1 bits (125), Expect = 5e-06
Identities = 63/259 (24%), Positives = 106/259 (40%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +F+ A T GK Y
Sbjct: 317 SFLKLIDLLGGIDVYNDQEFT----------------AHTNGKY---------------Y 345
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
P G +D L + R R+ +GD R + QQ+V+ ++ K+ + +L
Sbjct: 346 P----------AGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEAL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIINSLQDSIQTNMP 414
gb|AAD53065.1|AF163833_2 (AF163833) CpsX [Streptococcus agalactiae]
Length = 486
Score = 52.7 bits (124), Expect = 6e-06
Identities = 59/261 (22%), Positives = 98/261 (36%), Gaps = 63/261 (24%)
Query: 154 VAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRD 213
+ K+ + + +G NI + G D S V+ +D +++ VN H+ + + RD
Sbjct: 214 IKKKINRKNTNHKEGVFNIYISGIDTFG-SISTVSRSDVNIIMTVNTNTHKVLLTTTPRD 272
Query: 214 TLVNIPDVGSSDTPDSKINSAFTIGEQYNK------QGVNLMSETLKNNFGINCQYYAVV 267
V IPD G G QY+K GV +TL+N + IN YYA +
Sbjct: 273 AYVKIPDGG---------------GNQYDKLTHAGLYGVETSMKTLENLYDINLDYYARI 317
Query: 268 DFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAA 327
+FSSF I L + K VN
Sbjct: 318 NFSSFFKINRPLGRSDSLYTIKLLQVN------------------------------MVI 347
Query: 328 LGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNP 386
L +P G T ++ L + R R+ GD R + Q++V+ +++K+ +
Sbjct: 348 LDFPVGQVT----------LNSEQALGFVRERYSLQGGDNDRGRNQEKVIAAIINKLASS 397
Query: 387 LSLFTASSALGTTRAVTMTNI 407
S+ +S + TN+
Sbjct: 398 QSVTKLNSITSQLQTSVQTNM 418
gi|3818482 (AF057294) Cps23fA [Streptococcus pneumoniae]
Length = 481
Score = 52.7 bits (124), Expect = 6e-06
Identities = 59/259 (22%), Positives = 104/259 (39%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + +L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEAL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIIDSLQDSIQTNMP 414
gi|2804769 (AF030373) putative regulatory protein [Streptococcus pneumoniae]
>gi|2804774 (AF030374) putative regulatory protein
[Streptococcus pneumoniae]
Length = 481
Score = 52.7 bits (124), Expect = 6e-06
Identities = 59/259 (22%), Positives = 104/259 (39%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + +L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEAL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIIDSLQDSIQTNMP 414
emb|CAA59785| (X85787) capsular polysaccharide synthesis protein [Streptococcus
pneumoniae]
Length = 481
Score = 52.7 bits (124), Expect = 6e-06
Identities = 59/259 (22%), Positives = 104/259 (39%), Gaps = 54/259 (20%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + +L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAILQKLTSTEAL 395
Query: 390 FTASSALGTTRAVTMTNIP 408
S+ + + + TN+P
Sbjct: 396 KNYSTIIDSLQDSIQTNMP 414
gi|2804747 (AF030369) putative regulatory protein [Streptococcus pneumoniae]
>gi|2804764 (AF030372) putative regulatory protein
[Streptococcus pneumoniae]
Length = 481
Score = 51.9 bits (122), Expect = 1e-05
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 67/298 (22%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAIIQKLTSTEVL 395
Query: 390 FTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE-NAYDMYG 446
SS L + TN+P I ++D+ N T + + +++ N+ D+ G
Sbjct: 396 KNYSSILQGLQDSLQTNMP--------IETMIDLVN----TQLESGGNYKVNSQDLKG 441
gi|2804735 (AF030367) putative regulatory protein [Streptococcus pneumoniae]
>gi|2804741 (AF030368) putative regulatory protein
[Streptococcus pneumoniae] >gi|2804752 (AF030370)
putative regulatory protein [Streptococcus pneumoniae]
>gi|2804758 (AF030371) putative regulatory protein
[Streptococcus pneumoniae]
Length = 481
Score = 51.9 bits (122), Expect = 1e-05
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 67/298 (22%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAIIQKLTSTEVL 395
Query: 390 FTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE-NAYDMYG 446
SS L + TN+P I ++D+ N T + + +++ N+ D+ G
Sbjct: 396 KNYSSILQGLQDSLQTNMP--------IETMIDLVN----TQLESGGNYKVNSQDLKG 441
gi|485275 (U09239) putative regulatory protein [Streptococcus pneumoniae]
>gi|1589411|prf||2211258A cpsA gene [Streptococcus
pneumoniae]
Length = 481
Score = 51.9 bits (122), Expect = 1e-05
Identities = 68/298 (22%), Positives = 119/298 (39%), Gaps = 67/298 (22%)
Query: 151 EGSVAKQEKFTSLKNSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSF 210
+G K E + KN S NI + G D SS V+ +D +++ VN + + +
Sbjct: 209 KGFTKKVEAPKTSKNQ--SFNIYVSGIDTYGPISS-VSRSDVNILMTVNRDTKKILLTTT 265
Query: 211 MRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFS 270
RD V I D G++ K+ A GV+ TL+N +G++ YY ++F+
Sbjct: 266 PRDAYVPIADGGNNQK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFT 316
Query: 271 SFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGY 330
SF +ID L + D +FS ++G+
Sbjct: 317 SFLKMIDLLGGVDVHNDQEFSALHGK---------------------------------- 342
Query: 331 PDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSL 389
G +D L + R R+ +GD R + QQ+V+ ++ K+ + L
Sbjct: 343 -------FHFPVGNVHLDSEQALGFVRERYSLADGDRDRGRNQQKVIVAIIQKLTSTEVL 395
Query: 390 FTASSALGTTRAVTMTNIPNSFFLTKGITALLDMKNGIKSTTIPANNDWE-NAYDMYG 446
SS L + TN+P I ++D+ N T + + +++ N+ D+ G
Sbjct: 396 KNYSSILQGLQDSLQTNMP--------IETMIDLVN----TQLESGGNYKVNSQDLKG 441
gb|AAC78663.1| (AF094575) putative regulatory protein Cps19aA [Streptococcus
pneumoniae]
Length = 481
Score = 49.6 bits (116), Expect = 5e-05
Identities = 53/245 (21%), Positives = 98/245 (39%), Gaps = 52/245 (21%)
Query: 165 NSDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGSS 224
+ D S NI + G D SS V+ + +++ VN + + + RD V I D G++
Sbjct: 221 SKDQSFNIYVSGIDTYGPISS-VSRSYVNILMTVNRDTKKILLTTTPRDAYVPIADGGNN 279
Query: 225 DTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSLFPTGL 284
K+ A GV+ TL+N +G++ YY ++F+SF +ID L +
Sbjct: 280 QK--DKLTHA-------GIYGVDSSIHTLENLYGVDINYYVRLNFTSFLKLIDLLGGVDV 330
Query: 285 KIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGT 344
D F++++G+ G
Sbjct: 331 YNDQDFTSLHGK-----------------------------------------FHFPVGN 349
Query: 345 QKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMSKMKNPLSLFTASSALGTTRAVT 403
+D L + R R+ +GD+ R + QQ+V+ ++ K+ + +L S + + +
Sbjct: 350 VHLDSEQALGFVRERYSLADGDHDRGRNQQKVIAAILQKLTSSEALKNYSRIIDSLQDSI 409
Query: 404 MTNIP 408
TN+P
Sbjct: 410 QTNMP 414
emb|CAB06226| (Z83864) hypothetical protein Rv3840 [Mycobacterium tuberculosis]
Length = 137
Score = 49.2 bits (115), Expect = 7e-05
Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 202 NHQTQIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINC 261
++ T ++S RD+ V IP G KIN+AF +G G L+++T++ G++
Sbjct: 21 DNPTTLISIPRDSYVPIPGHGRD-----KINAAFALG------GGRLLTQTVELATGLHL 69
Query: 262 QYYAVVDFSSFATIIDSLFP-TGLKIDAKFSTVNG 295
+YA V FS FA ++D+ P G+ + A T++G
Sbjct: 70 DHYAEVGFSEFADLVDAFDPLAGVDLPAGCQTLDG 104
emb|CAB08707| (Z95390) cpsA [Mycobacterium tuberculosis]
Length = 512
Score = 46.1 bits (107), Expect = 6e-04
Identities = 71/266 (26%), Positives = 110/266 (40%), Gaps = 50/266 (18%)
Query: 164 KNSDGSVNILLLGADQR--------PWQ----------SSGVAHTDTIMVLHVNGKNHQT 205
++S ++NILL+G D R PW G +T+T++++HV G + +
Sbjct: 66 RSSGNNMNILLIGLDSRKDQEGNDLPWSVLKQLHAGDSDDGGYNTNTLILVHV-GADGKV 124
Query: 206 QIVSFMRDTLVNIPDVGSSDTPDSKINSAFTIGEQYNKQGVNLMSETLKNNFGINCQYYA 265
S RD V P G KI A+ + +QY ++E L N G++ +
Sbjct: 125 VAFSIPRDDWV--PFTGVPGYNHIKIKEAYGLTKQY-------VAEQLANQ-GVSDRKEL 174
Query: 266 VV---DFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPVPDDLAATEGKVSSDKDLTA 322
+ + AT+ TG+ ID F+ +N DLA T G V D+
Sbjct: 175 ETRGREAARAATLRAVRSLTGVPIDY-FAEINLAGFY------DLAQTLGGV----DVCL 223
Query: 323 EEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHD-DEGDYGRVKRQQQVLETVMS 381
A Y G F G Q+++ L + R RH D GD R RQQ L +VM
Sbjct: 224 NHAVYDSY--SGADF---PAGRQRLNAAQALAFVRQRHGLDNGDLDRTHRQQAFLSSVMR 278
Query: 382 KMKNPLSLFTASSALGTTRAVTMTNI 407
++++ FT L AV ++
Sbjct: 279 ELQDS-GTFTNLDRLDNLMAVARKDV 303
gb|AAD24447.1|AF118389_4 (AF118389) Cps2A [Streptococcus suis]
Length = 481
Score = 44.9 bits (104), Expect = 0.001
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 22/136 (16%)
Query: 166 SDGSVNILLLGADQRPWQSSGVAHTDTIMVLHVNGKNHQTQIVSFMRDTLVNIPDVGSSD 225
S S NI + G D S V+ +D +++ VN H+ + + RD+ V D G +
Sbjct: 222 SGDSFNIYISGIDAYG-PISTVSRSDVNIIMTVNRATHKILLTTTPRDSYVAFADGGQN- 279
Query: 226 TPDSKINSAFTIGEQYNK------QGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSL 279
QY+K GVN TL+N +GI+ Y ++F SF +ID +
Sbjct: 280 --------------QYDKLTHAGIYGVNASVHTLENFYGIDISNYVRLNFISFLQLIDLV 325
Query: 280 FPTGLKIDAKFSTVNG 295
+ D +F++++G
Sbjct: 326 GGIDVYNDQEFTSLHG 341
gb|AAF12120.1|AE002087_3 (AE002087) LytR/CspA/Psr family protein [Deinococcus radiodurans]
Length = 438
Score = 44.5 bits (103), Expect = 0.002
Identities = 55/252 (21%), Positives = 92/252 (35%), Gaps = 58/252 (23%)
Query: 189 HTDTIMVLHVNGKNHQTQIVSFMRDTLVN-----IPDVGSSDTPDSKINSAFTIGEQYNK 243
+TDT+MV+ V+ +++ RDT V IP + KINS + G
Sbjct: 97 NTDTLMVVKVSPAG--INVLNIPRDTTVGDYSYRIP------AAEQKINSKYWSG----- 143
Query: 244 QGVNLMSETLKNNFGINCQYYAVVDFSSFATIIDSLFPTGLKIDAKFSTVNGENLSAVPV 303
G ++ ++ G Y +V +ID+L
Sbjct: 144 -GPQALTRAVEEVMGEKVDSYVIVRTDYVERVIDAL------------------------ 178
Query: 304 PDDLAATEGKVSSDKDLTAEEAAALGYPDGGGTFMMIKPGTQKMDGRMLLNYARFRHDDE 363
D+T E G + + PG + G+ + Y R R
Sbjct: 179 ------------GGLDVTVPEPGIEWVDQAAGVDLKLAPGEHHLAGQEAVWYLRVRKGFG 226
Query: 364 GDYGRVKRQQQVLETVMSKMKNPLSLFTASSALGTTRAVTMTNIPNSFFLTKGITALLDM 423
DYGR+ Q+Q L + ++K+P L + LG TN+ + LT+ I L +
Sbjct: 227 DDYGRIDHQKQALTQLAGRLKSPQGLTALPTILGGVGNGVETNV-DPAVLTQLIPHLSGL 285
Query: 424 KNGIKSTTIPAN 435
K ++ T+P +
Sbjct: 286 K--LRFATLPTD 295
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107024847
Number of Sequences: 457798
Number of extensions: 4061334
Number of successful extensions: 8178
Number of sequences better than 1.0e-02: 40
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 8126
Number of HSP's gapped (non-prelim): 63
length of query: 467
length of database: 140,871,481
effective HSP length: 60
effective length of query: 407
effective length of database: 113,403,601
effective search space: 46155265607
effective search space used: 46155265607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 97 (42.2 bits)