BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= yraB (1702 kb reverse) BIO15.01
         (128 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P50839|YPSB_BACSU  HYPOTHETICAL 11.6 KD PROTEIN IN COTD-K...    57  4e-08

 sp|P50839|YPSB_BACSU HYPOTHETICAL 11.6 KD PROTEIN IN COTD-KDUD INTERGENIC REGION
           >gi|1146182 (L47838) putative [Bacillus subtilis]
           >gi|2634637|emb|CAB14135| (Z99115) ypsB [Bacillus
           subtilis]
           Length = 98
           
 Score = 57.4 bits (136), Expect = 4e-08
 Identities = 37/115 (32%), Positives = 53/115 (45%), Gaps = 28/115 (24%)

Query: 5   KFTPKDIYEADFSTKMRGYDKXXXXXXXXXXIADYETYQTENLRLQEENEFLKKKIAELE 64
           K + K+I E +F T +RGY +          I DYET+  E   LQ+EN  LKK++ E  
Sbjct: 7   KLSAKEILEKEFKTGVRGYKQEDVDKFLDMIIKDYETFHQEIEELQQENLQLKKQLEE-- 64

Query: 65  MQVSKPNQANLDDTQRFDPNQILQARSSKPKVEMRNPSNFDLLKRINRLEQAVFG 119
                                     +SK +    N +NFD+LKR++ LE+ VFG
Sbjct: 65  --------------------------ASKKQPVQSNTTNFDILKRLSNLEKHVFG 93



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.313    0.131    0.359 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31035804
Number of Sequences: 457798
Number of extensions: 985109
Number of successful extensions: 3580
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3578
Number of HSP's gapped (non-prelim): 1
length of query: 128
length of database: 140,871,481
effective HSP length: 57
effective length of query: 71
effective length of database: 114,776,995
effective search space: 8149166645
effective search space used: 8149166645
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 91 (39.9 bits)