BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= yphH (1578 kb reverse) BIO15.01
         (133 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD36075.1|AE001762_2  (AE001762) hypothetical protein [T...   100  5e-21
gi|1402862  (U60777) Pep1 [Plasmid R751] >gi|1572541 (U67194...    44  5e-04

 gb|AAD36075.1|AE001762_2 (AE001762) hypothetical protein [Thermotoga maritima]
           Length = 135
           
 Score =  100 bits (247), Expect = 5e-21
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 8/126 (6%)

Query: 11  IFPQGEKNPYGAYFTGQSYLEGMIADKDLPFG--VGNVTFEPGCRNHWHIHKDGYQVLLV 68
           IF +G K     +FTG  +++ ++ D++  F   V +V FEPG R HWH H  G Q+L+V
Sbjct: 5   IFERGSKGS-SDFFTGNVWVKMLVTDENGVFNTQVYDVVFEPGARTHWHSHPGG-QILIV 62

Query: 69  TAGEGWYQEEGKEAQLLHAGDTIVTHAGVKHWHGATKDSWFSHVAITA----GEAVWLEE 124
           T G+G+YQE GK A++L  GD +     V HWHGA  D    H+ I+     G A WL  
Sbjct: 63  TRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGISTQVHLGPAEWLGS 122

Query: 125 VSDEQY 130
           V++E+Y
Sbjct: 123 VTEEEY 128



 gi|1402862 (U60777) Pep1 [Plasmid R751] >gi|1572541 (U67194) Pep1
           [Enterobacter aerogenes]
           Length = 140
           
 Score = 44.1 bits (102), Expect = 5e-04
 Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 30  LEGMIADKDLPFGVGNVTFEPGCRNHWHIHKDGYQVLLVTAGEGWYQEEGKEAQLLHAGD 89
           + G+   ++L F V +V +EPG  N  H H        V +G   +QEEGKE   L  GD
Sbjct: 42  VRGVDGAENLEFIVIDVKYEPGGINRRHYHPAAV-TFYVLSGTPVFQEEGKEPVTLKPGD 100

Query: 90  TIVTHAGVKHWH 101
           +++  AG  H H
Sbjct: 101 SLLVPAGTTHSH 112



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.315    0.135    0.433 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43482508
Number of Sequences: 457798
Number of extensions: 1844632
Number of successful extensions: 2359
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 2
length of query: 133
length of database: 140,871,481
effective HSP length: 48
effective length of query: 85
effective length of database: 118,897,177
effective search space: 10106260045
effective search space used: 10106260045
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 92 (40.2 bits)