BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= yphF (1577 kb reverse) BIO15.01
         (87 letters)

           457,798 sequences; 140,871,481 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|4097531  (U64311) unknown [Lactococcus lactis]                 118  6e-27
sp|P12049|YEXA_BACSU  HYPOTHETICAL 9.7 KD PROTEIN IN PURC-PU...    55  8e-08
sp|Q55842|Y519_SYNY3  HYPOTHETICAL 10.9 KD PROTEIN SLR0519 >...    41  0.002

 gi|4097531 (U64311) unknown [Lactococcus lactis]
          Length = 88
          
 Score =  118 bits (293), Expect = 6e-27
 Identities = 61/85 (71%), Positives = 63/85 (73%)

Query: 1  MTKVRVYVAYKASILDPQAQAIKAATHKMGYQEVTELNVGKXXXXXXXXXXXXXXXXXXX 60
          MTKVRVYVAYKASILDPQAQAIKAATHKMGYQEV++LNVGK                   
Sbjct: 1  MTKVRVYVAYKASILDPQAQAIKAATHKMGYQEVSDLNVGKFFDFDFDAEAELAKEKATE 60

Query: 61 XXNELLANPNMETYKVEILNEQSEG 85
            NELLANPNMETYKVEIL EQSEG
Sbjct: 61 IANELLANPNMETYKVEILTEQSEG 85



 sp|P12049|YEXA_BACSU HYPOTHETICAL 9.7 KD PROTEIN IN PURC-PURL INTERGENIC REGION
          >gi|80355|pir||E29326 hypothetical protein (pur operon)
          - Bacillus subtilis >gi|2632960|emb|CAB12466| (Z99107)
          similar to hypothetical proteins [Bacillus subtilis]
          Length = 84
          
 Score = 55.0 bits (130), Expect = 8e-08
 Identities = 28/78 (35%), Positives = 40/78 (50%)

Query: 1  MTKVRVYVAYKASILDPQAQAIKAATHKMGYQEVTELNVGKXXXXXXXXXXXXXXXXXXX 60
          M KV+VYV+ K S+LDPQ  A++ A H M Y EV ++ +GK                   
Sbjct: 1  MYKVKVYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKSDRDLDVLVKE 60

Query: 61 XXNELLANPNMETYKVEI 78
             +LLAN  +E Y+ E+
Sbjct: 61 MCEKLLANTVIEDYRYEV 78



 sp|Q55842|Y519_SYNY3 HYPOTHETICAL 10.9 KD PROTEIN SLR0519 >gi|1001760|dbj|BAA10598|
          (D64004) hypothetical protein [Synechocystis sp.]
          Length = 100
          
 Score = 40.6 bits (93), Expect = 0.002
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 5  RVYVAYKASILDPQAQAIKAATHKMGYQEVTELNVGKXXXXXXXX-XXXXXXXXXXXXXN 63
          R+YV  + S+LDP   A+++   ++GY  V+++ +GK                      +
Sbjct: 17 RIYVTLRPSVLDPAGTAVQSGLQQLGYDGVSQVRIGKYIELTLEAPDEATASQQLDTMCD 76

Query: 64 ELLANPNMETYKVEI 78
          +LLAN  +E Y  EI
Sbjct: 77 QLLANTVIENYCFEI 91



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.308    0.124    0.325 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14675313
Number of Sequences: 457798
Number of extensions: 244043
Number of successful extensions: 288
Number of sequences better than 1.0e-02: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 3
length of query: 87
length of database: 140,871,481
effective HSP length: 60
effective length of query: 27
effective length of database: 113,403,601
effective search space: 3061897227
effective search space used: 3061897227
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.7 bits)
S2: 87 (38.3 bits)