BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= yljH (1198 kb forward) BIO15.01
         (68 letters)

           457,798 sequences; 140,871,481 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gi|2281317  (U80599) OrfB; similar to a Streptococcus pneumo...    82  6e-16
gi|4098497  (U78604) putative membrane protein [Streptococcu...    41  0.002

 gi|2281317 (U80599) OrfB; similar to a Streptococcus pneumoniae putative
          membrane protein encoded by GenBank Accession Number
          X99400; inactivation of the OrfB gene leads to
          UV-sensitivity and to decrease of homologous
          recombination (plasmidic test) [La...
          Length = 301
          
 Score = 82.3 bits (200), Expect = 6e-16
 Identities = 41/68 (60%), Positives = 42/68 (61%)

Query: 1  MEKEQHRGFKASWFFKWFXXXXXXXXXXXXXXXXXXXXXXXXXGFIFKPVGEFITVISLP 60
          ME+EQHR FKASWFFKWF                         GFIFKPVGEFITVISLP
Sbjct: 1  MEQEQHRSFKASWFFKWFINNKVVASLAIVLLFLLNILLLNKVGFIFKPVGEFITVISLP 60

Query: 61 VILAAVFY 68
          VILAAVFY
Sbjct: 61 VILAAVFY 68



 gi|4098497 (U78604) putative membrane protein [Streptococcus mutans]
          Length = 395
          
 Score = 41.0 bits (94), Expect = 0.002
 Identities = 19/60 (31%), Positives = 26/60 (42%)

Query: 9  FKASWFFKWFXXXXXXXXXXXXXXXXXXXXXXXXXGFIFKPVGEFITVISLPVILAAVFY 68
          F  SWFFKWF                           IFKP+  F+ VI LP++++A+ Y
Sbjct: 14 FNLSWFFKWFLDNKTVTVLLVLLLVFLDILVFTKISSIFKPLLSFLAVIMLPLVISALLY 73



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.335    0.148    0.506 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12358216
Number of Sequences: 457798
Number of extensions: 179968
Number of successful extensions: 429
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 140,871,481
effective HSP length: 39
effective length of query: 29
effective length of database: 123,017,359
effective search space: 3567503411
effective search space used: 3567503411
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 88 (38.7 bits)