BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ylgG (1168 kb forward) BIO15.01
         (165 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA89240.1|  (AB024530) SA1B10-2 [Enterococcus seriolicida]    51  7e-06
gi|2982891  (AE000676) AP4A hydrolase [Aquifex aeolicus]           42  0.003
emb|CAB49505.1|  (AJ248284) mutator protein MutT (mutT) [Pyr...    41  0.006
sp|P56380|AP4A_MOUSE  BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE (AS...    41  0.006

 dbj|BAA89240.1| (AB024530) SA1B10-2 [Enterococcus seriolicida]
          Length = 81
          
 Score = 50.8 bits (119), Expect = 7e-06
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 4/66 (6%)

Query: 1  MNEDLIAEIQALSAIGSEEKFSEIIRLLKNSTLELRGKKNPDLQLSASALVFKKHKLFFI 60
          M  DLI E   LSA+ S +K  ++I LL+ S   L+GK+NPDLQLSASA+VFK  +    
Sbjct: 1  MYNDLIRE---LSALESSKKQEQVIALLR-SKKGLKGKQNPDLQLSASAVVFKGRRCILS 56

Query: 61 EHPYQK 66
            P +K
Sbjct: 57 SIPIKK 62



 gi|2982891 (AE000676) AP4A hydrolase [Aquifex aeolicus]
          Length = 134
          
 Score = 42.2 bits (97), Expect = 0.003
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 44 QLSASALVFKKHKLFFIEHPYQKELLLPAGHVELGEKPLETAIREFHEETG 94
          + SA  ++FK  ++  I+ P       P G++E GEKP ETA+RE  EETG
Sbjct: 4  EFSAGGVLFKDGEVLLIKTP-SNVWSFPKGNIEPGEKPEETAVREVWEETG 53



 emb|CAB49505.1| (AJ248284) mutator protein MutT (mutT) [Pyrococcus abyssi]
           Length = 173
           
 Score = 41.0 bits (94), Expect = 0.006
 Identities = 30/95 (31%), Positives = 46/95 (47%), Gaps = 13/95 (13%)

Query: 20  KFSEIIRLLKNSTLELRGKKNPDLQLSASALVFKKHKLFFIEH---PYQKELLLPAGHVE 76
           +F E +R +      LR + +  + L+   ++   + + FI     PY+  L LP G VE
Sbjct: 21  EFREEVRKIAEGK-RLRAELHRCIGLTVDLVIVYNNGIVFIRRKNEPYKGYLALPGGFVE 79

Query: 77  LGEKPLETAIREFHEETGFSASESGKLVDVNLINI 111
            GE+  E A+RE  EETG         +DV L+ I
Sbjct: 80  YGERVEEAAVREAKEETG---------LDVKLLRI 105



 sp|P56380|AP4A_MOUSE BIS(5'-NUCLEOSYL)-TETRAPHOSPHATASE (ASYMMETRICAL) (DIADENOSINE
          5',5'''-P1,P4-TETRAPHOSPHATE ASYMMETRICAL HYDROLASE)
          (DIADENOSINE TETRAPHOSPHATASE) (AP4A HYDROLASE)
          (AP4AASE)
          Length = 147
          
 Score = 41.0 bits (94), Expect = 0.006
 Identities = 23/61 (37%), Positives = 35/61 (56%), Gaps = 11/61 (18%)

Query: 50 LVFKKHKLFFIEHPYQKELLL-----------PAGHVELGEKPLETAIREFHEETGFSAS 98
          ++F++H +  +++   + LLL           P GHV+ GE  LETA+RE  EETG  AS
Sbjct: 9  IIFRRHLIPKMDNSTIEFLLLQASDGIHHWTPPKGHVDPGENDLETALRETREETGIEAS 68

Query: 99 E 99
          +
Sbjct: 69 Q 69



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.317    0.137    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40321544
Number of Sequences: 457798
Number of extensions: 1453351
Number of successful extensions: 3627
Number of sequences better than 1.0e-02: 4
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3625
Number of HSP's gapped (non-prelim): 4
length of query: 165
length of database: 140,871,481
effective HSP length: 55
effective length of query: 110
effective length of database: 115,692,591
effective search space: 12726185010
effective search space used: 12726185010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 92 (40.2 bits)