Score E
Sequences producing significant alignments: (bits) Value
sp|P32813|YGL3_BACST HYPOTHETICAL 18.2 KD PROTEIN IN GLDA 3... 189 2e-47
gi|1381681 (U58864) CspR [Bacillus subtilis] 184 4e-46
emb|CAB12721| (Z99108) rRNA methylase homolog [Bacillus sub... 183 8e-46
emb|CAA86559| (Z46432) orf [Bacillus circulans subsp. alkal... 142 2e-33
emb|CAB07516| (Z93102) hypothetical 13.6 kd protein [Bacill... 126 1e-28
sp|P75257|Y346_MYCPN HYPOTHETICAL TRNA/RRNA METHYLTRANSFERA... 118 3e-26
sp|P47588|Y346_MYCGE HYPOTHETICAL TRNA/RRNA METHYLTRANSFERA... 116 1e-25
sp|P74516|Y992_SYNY3 HYPOTHETICAL TRNA/RRNA METHYLTRANSFERA... 112 2e-24
gb|AAB41347.1| (L39892) spoU [Chlamydophila caviae] 111 4e-24
emb|CAB09926| (Z97179) rRNA methylase [Mycobacterium leprae] 109 2e-23
emb|CAB73162.1| (AL139076) putative RNA methylase [Campylob... 106 1e-22
gb|AAD18799| (AE001648) rRNA Methylase [Chlamydia pneumoniae] 104 5e-22
sp|P33899|YIBK_ECOLI HYPOTHETICAL TRNA/RRNA METHYLTRANSFERA... 104 6e-22
sp|P44868|YIBK_HAEIN HYPOTHETICAL TRNA/RRNA METHYLTRANSFERA... 102 2e-21
emb|CAA15751| (AL009198) spoU [Mycobacterium tuberculosis] 102 2e-21
gb|AAF30677.1|AE002123_10 (AE002123) rRNA methylase [Ureapl... 97 1e-19
gb|AAC68142.1| (AE001324) rRNA Methylase (SpoU family) [Chl... 94 5e-19
gi|4104449 (AF035964) unknown [Brucella abortus] 91 6e-18
gb|AAF09819.1|AE001885_3 (AE001885) RNA methyltransferase, ... 83 1e-15
gi|2191177 (AF007270) belongs to the SPOU family of rRNA me... 80 1e-14
gi|695296 (L40369) spoU [Chlamydia trachomatis] 66 3e-10
sp|P19396|TRMH_ECOLI TRNA (GUANOSINE-2'-O-)-METHYLTRANSFERA... 45 4e-04
gb|AAF10591.1|AE001953_5 (AE001953) rRNA methylase [Deinoco... 42 0.004
gi|3023080 (AF054517) putative rRNA methylase [Synechococcu... 41 0.008
sp|P32813|YGL3_BACST HYPOTHETICAL 18.2 KD PROTEIN IN GLDA 3'REGION (ORF3)
>gi|80208|pir||JS0680 hypothetical protein 3 (gldA 5'
region) - Bacillus stearothermophilus >gi|142979
(M65289) ORF3 is homologous to an ORF downstream of the
spoT gene of E.coli; ORF3 [Bacillus stearothermophilus]
Length = 157
Score = 189 bits (474), Expect = 2e-47
Identities = 89/155 (57%), Positives = 112/155 (71%), Gaps = 2/155 (1%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
H+ LF+P I NTGNIARTCAATNT LHLI P GF DK L+RAGLDYW+ VNI Y+ +
Sbjct: 4 HVVLFQPEIPANTGNIARTCAATNTALHLIRPLGFSTDDKMLRRAGLDYWEFVNIHYYDS 63
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
LD F N G Y ++KF + Y+ D+SD K+ +F+FGRE TGLP+E + E+ D C
Sbjct: 64 LDHFFQQ-NQNGDFYYITKFGKRYYTSYDFSDPSKEIFFIFGRETTGLPKELLAENEDRC 122
Query: 123 IRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGL 157
+RIPM E+VR+LNLSN A ++VYEAL+QQ F GL
Sbjct: 123 LRIPMT-ENVRALNLSNTAAILVYEALRQQSFHGL 156
gi|1381681 (U58864) CspR [Bacillus subtilis]
Length = 157
Score = 184 bits (462), Expect = 4e-46
Identities = 82/156 (52%), Positives = 117/156 (74%), Gaps = 2/156 (1%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
H+ L++P I NTGNIARTCAATNT LHLI P GF DK LKRAGLDYW+ VN+VYH +
Sbjct: 4 HVVLYQPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDS 63
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
L++ + G+ + ++KF + ++ DY+D ++D++F+FGRE +GLP++ + + D C
Sbjct: 64 LEELFEAYKK-GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRC 122
Query: 123 IRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
+R+PM EHVRSLNLSN A ++VYEAL+QQ++R L+
Sbjct: 123 LRLPMT-EHVRSLNLSNTAAILVYEALRQQNYRDLK 157
emb|CAB12721| (Z99108) rRNA methylase homolog [Bacillus subtilis]
Length = 160
Score = 183 bits (460), Expect = 8e-46
Identities = 82/156 (52%), Positives = 116/156 (73%), Gaps = 2/156 (1%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
H+ L+ P I NTGNIARTCAATNT LHLI P GF DK LKRAGLDYW+ VN+VYH +
Sbjct: 7 HVVLYHPEIPANTGNIARTCAATNTTLHLIRPLGFSTDDKMLKRAGLDYWEFVNVVYHDS 66
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
L++ + G+ + ++KF + ++ DY+D ++D++F+FGRE +GLP++ + + D C
Sbjct: 67 LEELFEAYKK-GKFFFITKFGQQPHTSFDYTDLDEDYFFVFGRETSGLPKDLIQNNMDRC 125
Query: 123 IRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
+R+PM EHVRSLNLSN A ++VYEAL+QQ++R L+
Sbjct: 126 LRLPMT-EHVRSLNLSNTAAILVYEALRQQNYRDLK 160
emb|CAA86559| (Z46432) orf [Bacillus circulans subsp. alkalophilus]
Length = 144
Score = 142 bits (355), Expect = 2e-33
Identities = 75/146 (51%), Positives = 93/146 (63%), Gaps = 5/146 (3%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
HI L EP I NTGNIARTCAAT T LHL+ P GF DK LKRAGLDYW V+I YH +
Sbjct: 4 HIVLVEPEIPANTGNIARTCAATGTHLHLVRPLGFNTDDKTLKRAGLDYWYAVHIEYHDS 63
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
++ +G Y +K A Y D+ + D + + +FG+E GLP E + + D C
Sbjct: 64 FEELQQKYPEGRFFYTSTK-ATKRYCDIAFQDGD---FLVFGKETKGLPPELLAANPDSC 119
Query: 123 IRIPMNDEHVRSLNLSNCACMIVYEA 148
IR+PM D+ VRSLNLSN A +IVYEA
Sbjct: 120 IRMPMTDK-VRSLNLSNSAAIIVYEA 144
emb|CAB07516| (Z93102) hypothetical 13.6 kd protein [Bacillus subtilis]
Length = 114
Score = 126 bits (314), Expect = 1e-28
Identities = 55/115 (47%), Positives = 87/115 (74%), Gaps = 2/115 (1%)
Query: 44 LKRAGLDYWDKVNIVYHKNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLF 103
LKRAGLDYW+ VN+VYH +L++ + G + + ++KF + ++ DY+D ++D++F+F
Sbjct: 2 LKRAGLDYWEFVNVVYHDSLEELFEAYKKG-KFFFITKFGQQPHTSFDYTDLDEDYFFVF 60
Query: 104 GREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
GRE +GLP++ + + D C+R+PM EHVRSLNLSN A ++VYEAL+QQ++R L+
Sbjct: 61 GRETSGLPKDLIQNNMDRCLRLPMT-EHVRSLNLSNTAAILVYEALRQQNYRDLK 114
sp|P75257|Y346_MYCPN HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE MG346 HOMOLOG
>gi|2146304|pir||S73647 hypothetical protein ygl3 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1673994
(AE000029) Mycoplasma pneumoniae, hypothetical protein
(ygl3) homolog; similar to Swiss-Prot Accession Number
P32813, from B. stearothermophilus [Mycoplasma
pneumoniae]
Length = 166
Score = 118 bits (293), Expect = 3e-26
Identities = 60/157 (38%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
+I LF P I NTGNI R+C A LHLI+P+GF ++DK + RAGL+ WDKV + HK+
Sbjct: 7 NIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKVQMFEHKS 66
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDH-YFLFGREDTGLPEEFMHEHRDE 121
+ F+ + ++L++K ++ D ++ YF+FG+E GLP+ M ++
Sbjct: 67 WEHFIETTPPNKAIWLLTKSGTTTPDQINMQTDNREQLYFVFGQETKGLPQTLMEQYSQN 126
Query: 122 CIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
+RIP+ + VRS+NLSN ++YE KQ + L+
Sbjct: 127 QVRIPIWNP-VRSINLSNTVACVLYEYAKQNHYFNLD 162
sp|P47588|Y346_MYCGE HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE MG346
>gi|1361592|pir||C64238 hypothetical protein homolog
MG346 - Mycoplasma genitalium (SGC3) >gi|3844929
(U39716) rRNA methylase, putative [Mycoplasma
genitalium]
Length = 166
Score = 116 bits (287), Expect = 1e-25
Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
+I LF P I NTGNI R+C A LHLI+P+GF ++DK + RAGL+ WDK+ + HK+
Sbjct: 7 NIVLFCPEIPNNTGNIVRSCTAFKANLHLIKPYGFFLNDKRMVRAGLNCWDKIQLFEHKS 66
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDD-EKDHYFLFGREDTGLPEEFMHEHRDE 121
+ F+ + + ++L++K + + ++ + YF+FG+E GLP+ M +
Sbjct: 67 WEHFLQATTENKTIWLLTKSGDKTPDQICMTNKLPNELYFVFGQETKGLPKTIMDNFKQN 126
Query: 122 CIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
IRIP+ + VRS+NL+N I+YE KQ + L+
Sbjct: 127 QIRIPIWNS-VRSINLANAVVCILYEYSKQNQYSNLD 162
sp|P74516|Y992_SYNY3 HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE SLR0992
>gi|1653708|dbj|BAA18620| (D90915) hypothetical protein
[Synechocystis sp.]
Length = 153
Score = 112 bits (277), Expect = 2e-24
Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 5/152 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M + L P+I NTGNIARTCAAT T LHL+ P GFE+ D++LKRAGLDYW V++ YH
Sbjct: 1 MVKLVLVNPQIPPNTGNIARTCAATGTELHLVGPLGFELGDRYLKRAGLDYWPYVDLHYH 60
Query: 61 KNLDDFMNS-INDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHR 119
+ ++F+ GG L S + D Y + + + G E GLP + M +
Sbjct: 61 NSCEEFITHWRGQGGNLLGFSVTGTVNFWDYTYQSTD---WLMMGSETDGLP-QMMRDLS 116
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
+ + IPM VRSLNL++ A + ++EA +Q
Sbjct: 117 TQLLCIPMPHSEVRSLNLASSAAIALFEAGRQ 148
gb|AAB41347.1| (L39892) spoU [Chlamydophila caviae]
Length = 156
Score = 111 bits (275), Expect = 4e-24
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 5/150 (3%)
Query: 4 IALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNL 63
+ L+ P I NTGNI RTC A L L+ P GF + DK +KRAG+DYWDKVN+ +L
Sbjct: 3 VVLYNPDIPQNTGNIGRTCIALGAELILVRPLGFSLLDKFVKRAGMDYWDKVNLSVVDSL 62
Query: 64 DDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECI 123
D+ ++ + D +++ +S Y DV D ++FG E GLPE+ + ++ + C
Sbjct: 63 DEALSGV-DQNKVFCLSTKGSQYYGDVSL---PMDGVYVFGSESKGLPEDVLKKYYNHCY 118
Query: 124 RIPMNDEHVRSLNLSNCACMIVYEALKQQD 153
+PM +RSLNL+ ++++EA++Q +
Sbjct: 119 YLPMR-PGIRSLNLATTVGVVLFEAVRQNN 147
emb|CAB09926| (Z97179) rRNA methylase [Mycobacterium leprae]
Length = 169
Score = 109 bits (269), Expect = 2e-23
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 6/158 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M + + PRI NTGN RT A T LHL+EP GF++S+ L+RAGLDY D ++ H
Sbjct: 16 MFRLLFYTPRIPPNTGNAIRTAAVTGCALHLVEPIGFDLSNPKLRRAGLDYHDLASVTVH 75
Query: 61 KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFM-HEHR 119
+L + N+++ +++ S A +++DV Y + +FG E TGL + +H
Sbjct: 76 TSLSEAWNALSP-ARVFAFSTLANTLFTDVSY---QAGDVLMFGPEPTGLDAATLADDHI 131
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGL 157
+ +RIPM RSLNLSN A + VYEA +Q + GL
Sbjct: 132 TQQVRIPMLSGR-RSLNLSNAAAVAVYEAWRQHGYAGL 168
emb|CAB73162.1| (AL139076) putative RNA methylase [Campylobacter jejuni]
Length = 155
Score = 106 bits (262), Expect = 1e-22
Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 5/152 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M +I L PRI NTG+I R C LH+++P F+IS K ++RAGLDYWDK+ +
Sbjct: 1 MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAVRRAGLDYWDKLEPIIW 60
Query: 61 KNLDDFMN-SINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHR 119
+NL++F+N ++ + + + ++ Y D ++ +K+ + FG E GLP E M +
Sbjct: 61 ENLEEFLNENMIYKNRFFFATTKSQKAYFDAEF---QKNDFLFFGSESYGLPMELMQLNW 117
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
+ I IPM + RSLNL+ +I YEAL+Q
Sbjct: 118 ENAITIPMK-SYGRSLNLATSVGIISYEALRQ 148
gb|AAD18799| (AE001648) rRNA Methylase [Chlamydia pneumoniae]
Length = 156
Score = 104 bits (257), Expect = 5e-22
Identities = 51/149 (34%), Positives = 88/149 (58%), Gaps = 5/149 (3%)
Query: 4 IALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNL 63
+ L P I NTGNI RTC A L L+ P GF ++DK +KRAG+DYWDK+ + ++
Sbjct: 3 VVLHCPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWDKLQLTVVDSI 62
Query: 64 DDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECI 123
++ ++ + + Q++ +S Y++ ++FG E GLP+E + ++ C+
Sbjct: 63 EEALHDVPE-DQIFCLSTKGSASYTEFSLPSSGT---YVFGSESKGLPKEILKKYYKNCL 118
Query: 124 RIPMNDEHVRSLNLSNCACMIVYEALKQQ 152
RIPM + +RSLNL+ +++YE ++Q+
Sbjct: 119 RIPMQQD-IRSLNLATSVGIVLYEVVRQK 146
sp|P33899|YIBK_ECOLI HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE YIBK
>gi|1073422|pir||S47827 hypothetical protein 157b -
Escherichia coli >gi|466744 (U00039) alternate gene name
yibK [Escherichia coli] >gi|1790034 (AE000438) orf,
hypothetical protein [Escherichia coli]
Length = 157
Score = 104 bits (256), Expect = 6e-22
Identities = 64/160 (40%), Positives = 89/160 (55%), Gaps = 6/160 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M +I L+EP I NTGNI R CA T LH+IEP GF DK L+RAGLDY + + H
Sbjct: 1 MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60
Query: 61 KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHE-HR 119
+ F+ + N +L+ ++ +S V Y D + Y +FG E GLP +
Sbjct: 61 HDYRAFLEAENP-QRLFALTTKGTPAHSAVSYQDGD---YLMFGPETRGLPASILDALPA 116
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLEL 159
++ IRIPM + RS+NLSN ++VYEA +Q + G L
Sbjct: 117 EQKIRIPMVPDS-RSMNLSNAVSVVVYEAWRQLGYPGAVL 155
sp|P44868|YIBK_HAEIN HYPOTHETICAL TRNA/RRNA METHYLTRANSFERASE HI0766
>gi|1074511|pir||E64158 hypothetical protein HI0766 -
Haemophilus influenzae (strain Rd KW20) >gi|1573774
(U32760) rRNA methylase, putative [Haemophilus
influenzae Rd]
Length = 160
Score = 102 bits (252), Expect = 2e-21
Identities = 63/157 (40%), Positives = 88/157 (55%), Gaps = 6/157 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M I L+EP I NTGNI R CA T LHLIEP GF DK L+R+GLDY + I H
Sbjct: 1 MLDIVLYEPEIPQNTGNIIRLCANTGFRLHLIEPLGFTWDDKRLRRSGLDYHEFAEIKRH 60
Query: 61 KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHE-HR 119
K + F+ S +L+ ++ +S V + + Y +FG E G+P ++E
Sbjct: 61 KTFEAFLES-EKPKRLFALTTKGCPAHSQVKF---KLGDYLMFGPETRGIPMSILNEMPM 116
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRG 156
++ IRIPM + RS+NLSN + VYEA +Q ++G
Sbjct: 117 EQKIRIPMT-ANSRSMNLSNSVAVTVYEAWRQLGYKG 152
emb|CAA15751| (AL009198) spoU [Mycobacterium tuberculosis]
Length = 154
Score = 102 bits (251), Expect = 2e-21
Identities = 62/157 (39%), Positives = 89/157 (56%), Gaps = 6/157 (3%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYH 60
M + PRI NTGN RTCAAT LHL+EP GF++S+ L+RAGLDY D ++ H
Sbjct: 1 MFRLLFVSPRIAPNTGNAIRTCAATGCELHLVEPLGFDLSEPKLRRAGLDYHDLASVTVH 60
Query: 61 KNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHE-HR 119
+L +++ +++ + A ++++V Y + +FG E TGL E + + H
Sbjct: 61 ASLAHAWEALSP-ARVFAFTAQATTLFTNVGYRAGD---VLMFGPEPTGLDEATLADTHI 116
Query: 120 DECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRG 156
+RIPM RSLNLSN A + VYEA +Q F G
Sbjct: 117 TGQVRIPMLAGR-RSLNLSNAAAVAVYEAWRQHGFAG 152
gb|AAF30677.1|AE002123_10 (AE002123) rRNA methylase [Ureaplasma urealyticum]
Length = 172
Score = 96.7 bits (237), Expect = 1e-19
Identities = 53/171 (30%), Positives = 93/171 (53%), Gaps = 7/171 (4%)
Query: 1 MNHIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLK----RAGLDYWDKVN 56
M +I LFEP I NTGNIAR C + LHL+ P+GF + K RA ++ + +
Sbjct: 1 MLNIVLFEPEIILNTGNIARMCVGFDANLHLVRPYGFILDKKRFHKDFIRASTNHLNALK 60
Query: 57 IVYHKNLDDFMNSIN-DGGQLYLVSKFAEHVYSDVDYSD-DEKDHYFLFGREDTGLPEEF 114
+ + + ++F+N N G ++Y +++ D Y + + + Y +FG+E TG+
Sbjct: 61 LYEYDDFNEFINKNNISGDEIYFFTRYGTKTPCDYQYQNIIQHNVYLVFGKESTGIDHNI 120
Query: 115 MHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLELVHTYEK 165
+ ++ IRIP ++RSLN++N M +YE ++Q +F+ L ++K
Sbjct: 121 LKKYPHNWIRIP-TSINLRSLNIANSVAMGIYEVVRQNNFKDLFKYEPHKK 170
gb|AAC68142.1| (AE001324) rRNA Methylase (SpoU family) [Chlamydia trachomatis]
Length = 151
Score = 94.4 bits (231), Expect = 5e-19
Identities = 52/150 (34%), Positives = 83/150 (54%), Gaps = 9/150 (6%)
Query: 4 IALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNL 63
I L P I NTGNI RTC A L L+ P GF ++DK +KRAG+DYW+++++ +L
Sbjct: 3 IVLHNPDIPQNTGNIGRTCVALGAELILVRPLGFSLADKFVKRAGMDYWERLSLSVVDSL 62
Query: 64 DDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDE--KDHYFLFGREDTGLPEEFMHEHRDE 121
++ + + L +K + + Y + E D ++FG E GLP+ + + +
Sbjct: 63 EEALLGVPKERIFCLTTKGSSY------YGERELPLDGTYIFGAESKGLPQTVLDAYSSQ 116
Query: 122 CIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
C+ IPM E RSLNL+ +++YE +Q
Sbjct: 117 CLYIPM-IEGTRSLNLATSVGIVMYEVARQ 145
gi|4104449 (AF035964) unknown [Brucella abortus]
Length = 159
Score = 90.9 bits (222), Expect = 6e-18
Identities = 59/149 (39%), Positives = 84/149 (55%), Gaps = 6/149 (4%)
Query: 4 IALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNL 63
+AL++P I NTG I R A + LIEP GF+ISD+ LKRAG+DY ++ + H +
Sbjct: 5 VALYQPDIPGNTGTILRMAACLGFAVDLIEPAGFDISDRALKRAGMDYLEQAALTRHPDW 64
Query: 64 DDF-MNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
+ F N G L L+S A Y+ + +++ LFGRE G+PE +H++ DE
Sbjct: 65 NRFDAWRKNAGRGLVLLSTKAAIPYTGYQFQEND---ILLFGRESAGVPEA-IHDNADER 120
Query: 123 IRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
+ IPM RSLNL+ M EAL+Q
Sbjct: 121 LLIPM-VRSARSLNLAVSVAMTTGEALRQ 148
gb|AAF09819.1|AE001885_3 (AE001885) RNA methyltransferase, putative [Deinococcus
radiodurans]
Length = 158
Score = 83.1 bits (202), Expect = 1e-15
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKN 62
H+ LFEP N GN+ARTC+ LHLI PFGF + D+ +RA +DY V + +
Sbjct: 12 HVVLFEPEKAGNVGNVARTCSVLGAELHLIRPFGFHLHDREFRRAVMDYLQGVTLHEYAG 71
Query: 63 LDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDEC 122
DF + D +++ S A ++ + ++ Y LFG E GLP RD
Sbjct: 72 WSDFQAQLPDAARVFAFSTHATEYHTRAGF---KRGDYLLFGPESRGLPVWL----RDAL 124
Query: 123 IRIPM-NDEHVRSLNLSNCACMIVYEALKQ 151
++ + RSLNLS +EA +Q
Sbjct: 125 PKLKLPQPGRGRSLNLSVAVGAAAFEAGRQ 154
gi|2191177 (AF007270) belongs to the SPOU family of rRNA methylases.
[Arabidopsis thaliana]
Length = 271
Score = 80.0 bits (194), Expect = 1e-14
Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 25/175 (14%)
Query: 3 HIALFEPRIHFNTGNIARTCAATNTVLHLI--------------EPFGFEISDKHLKRAG 48
H+ L P+I NTG IARTCAA+ LHL+ +P GF++ D +KRAG
Sbjct: 83 HVVLVSPQIPGNTGCIARTCAASAVGLHLVGVNVDDLICHLFLLQPLGFQVDDARVKRAG 142
Query: 49 LDYWDKVNIVYHKNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYSDDEKDHYFLFGREDT 108
K N ++K + I ++ ++ D Y + Y LFG E +
Sbjct: 143 ---GRKTNDSFYKKRNKDTFKIATITSNWVAENNGYNLMQDFSYRSGD---YLLFGSETS 196
Query: 109 GLPEEFMHEHRDE-----CIRIPMNDEHVRSLNLSNCACMIVYEALKQQDFRGLE 158
GLP E + + E +RIPM + +VR LNLS + +YEA +Q ++ +E
Sbjct: 197 GLPPEALSDCNHEPYGGGTLRIPMVETYVRCLNLSVSVGIALYEASRQLNYEQIE 251
gi|695296 (L40369) spoU [Chlamydia trachomatis]
Length = 119
Score = 65.6 bits (157), Expect = 3e-10
Identities = 36/120 (30%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 34 PFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSINDGGQLYLVSKFAEHVYSDVDYS 93
P GF ++DK +KRAG+DYW+++++ +L++ + + L +K + + Y
Sbjct: 1 PLGFSLADKFVKRAGMDYWERLSLSVVDSLEEALLGVPKERIFCLTTKGSSY------YG 54
Query: 94 DDE--KDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
+ E D ++FG E GL + + + +C+ IPM E RSLNL+ +++YE +Q
Sbjct: 55 ERELPLDGTYIFGAESKGLSQTVLDAYSSQCLYIPM-IEGTRSLNLATSVGIVMYEVARQ 113
sp|P19396|TRMH_ECOLI TRNA (GUANOSINE-2'-O-)-METHYLTRANSFERASE (TRNA [GM18]
METHYLTRANSFERASE) >gi|78514|pir||JV0043 hypothetical
25K protein (spoT 3' region) - Escherichia coli
>gi|147866 (M24503) spoU gene product [Escherichia coli]
>gi|290501 (L10328) spoU [Escherichia coli] >gi|1790083
(AE000442) putative RNA methylase [Escherichia coli]
Length = 229
Score = 44.9 bits (104), Expect = 4e-04
Identities = 41/149 (27%), Positives = 72/149 (47%), Gaps = 11/149 (7%)
Query: 14 NTGNIARTCAATNT-VLHLIEPFGFEISDKHLKRAGLDYWDKVNIVYHKNLDDFMNSIND 72
N I RT A +H + P G + AG + W V + H+ + D + +
Sbjct: 32 NVSAIIRTADAVGVHEVHAVWP-GSRMRTMASAAAGSNSW--VQVKTHRTIGDAVAHLKG 88
Query: 73 GGQLYLVSKFAEHV--YSDVDYSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDE 130
G L + +++ + ++DY+ + L G+E TG+ +E + D+ I IPM
Sbjct: 89 QGMQILATHLSDNAVDFREIDYT---RPTCILMGQEKTGITQEAL-ALADQDIIIPMIGM 144
Query: 131 HVRSLNLSNCACMIVYEALKQQDFRGLEL 159
V+SLN+S + +I+YEA +Q+ G+ L
Sbjct: 145 -VQSLNVSVASALILYEAQRQRQNAGMYL 172
gb|AAF10591.1|AE001953_5 (AE001953) rRNA methylase [Deinococcus radiodurans]
Length = 265
Score = 41.8 bits (96), Expect = 0.004
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 83 AEHVYSDVDYSDDEKDHYF----------LFGREDTGLPEEFMHEHRDECIRIPMNDEHV 132
AEH + V + D Y+ L G E GLP E+ H + +R+PM+ +
Sbjct: 184 AEHNFRTVACTPDAPADYWDTPLTGRVALLLGTEHAGLPAEWRAAH--QAVRVPMHGQ-A 240
Query: 133 RSLNLSNCACMIVYEALKQQ 152
SLN++ A +++YEAL+Q+
Sbjct: 241 DSLNVATAAALVLYEALRQR 260
gi|3023080 (AF054517) putative rRNA methylase [Synechococcus PCC7002]
Length = 62
Score = 40.6 bits (93), Expect = 0.008
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 92 YSDDEKDHYFLFGREDTGLPEEFMHEHRDECIRIPMNDEHVRSLNLSNCACMIVYEALKQ 151
Y DD+ + LFG E P+ + + D + IP+N HVRSLNLS A + ++E +Q
Sbjct: 4 YQDDD---WLLFGSETKASPQXLL-QRCDATLTIPINKTHVRSLNLSVSAAVGLFEVRRQ 59
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.323 0.140 0.431
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51156546
Number of Sequences: 457798
Number of extensions: 2206585
Number of successful extensions: 4596
Number of sequences better than 1.0e-02: 24
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4539
Number of HSP's gapped (non-prelim): 24
length of query: 169
length of database: 140,871,481
effective HSP length: 49
effective length of query: 120
effective length of database: 118,439,379
effective search space: 14212725480
effective search space used: 14212725480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 93 (40.6 bits)