Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA75315.1| (AB011836) similar to Bordetella paraperlus... 183 3e-45
gi|2649157 (AE001006) chloride channel, putative [Archaeogl... 101 2e-20
sp|Q57753|Y305_METJA HYPOTHETICAL PROTEIN MJ0305 >gi|212822... 83 3e-15
gi|1552733 (U70214) similar to voltage-gated chloride chann... 82 7e-15
sp|P37019|YADQ_ECOLI HYPOTHETICAL 46.0 KD PROTEIN IN HEML-P... 82 7e-15
gb|AAD53928.1|AF179611_12 (AF179611) chloride channel prote... 71 2e-11
emb|CAB49446.1| (AJ248284) hypothetical protein [Pyrococcus... 68 2e-10
dbj|BAA80554.1| (AP000061) 358aa long hypothetical protein ... 67 3e-10
dbj|BAA29100.1| (AP000001) 370aa long hypothetical protein ... 65 1e-09
emb|CAB07049| (Z92770) hypothetical protein Rv0143c [Mycoba... 64 2e-09
gi|1787876 (AE000255) putative chloride channel [Escherichi... 63 5e-09
dbj|BAA15316| (D90801) ORF_ID:o311#6; similar to [SwissProt... 63 5e-09
dbj|BAA18578| (D90915) chloride channel protein [Synechocys... 63 5e-09
gb|AAF11316.1|AE002017_7 (AE002017) hypothetical protein [D... 61 2e-08
gb|AAC24628.1| (AE001274) CCP; L2602.3 [Leishmania major] 52 7e-06
gi|1788733 (AE000327) orf, hypothetical protein [Escherichi... 51 2e-05
gi|3953478 (AC002328) F22O2.23 [Arabidopsis thaliana] 47 3e-04
emb|CAA71369| (Y10338) chloride channel Stclc1 [Solanum tub... 42 0.008
dbj|BAA75315.1| (AB011836) similar to Bordetella paraperlussis transposase for
insertion sequence element(27%-identity) [Bacillus
halodurans]
Length = 424
Score = 183 bits (459), Expect = 3e-45
Identities = 111/368 (30%), Positives = 191/368 (51%), Gaps = 10/368 (2%)
Query: 39 YITEFRDSHALYLIPFLTLAGLLIVYIYK----NFGKDSQKGMGLIFEAGNHGREDIPKR 94
++ E R++ +++ FL LAGL + Y+Y + G + KG L+ E+ G+ + R
Sbjct: 36 HLGETRENRPWFVL-FLPLAGLALGYLYMKAGTSAGNELYKGNNLVIESVQ-GKGKMLLR 93
Query: 95 LVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAK-KILLITGMAAGFA 153
L PL+ T+++ LFG S GREG A+Q+GG + A+ K K +ILL+ G++AGF
Sbjct: 94 LGPLVYLGTFMTILFGGSTGREGAAIQMGGSVAEAVNKLFKVKLIDTRILLMGGISAGFG 153
Query: 154 GLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLG-LEKFSFAINTNIHI 212
F TPI A F +E+ LG++++ AL+P LV S+V +T+ +E F I T +
Sbjct: 154 AAFGTPITAAIFGMEMASLGRLKFEALVPCLVASFVGHYTTEKFWHVEHEKFIIATVPEV 213
Query: 213 DPLVLLKLAVIAVCFGLVGRFFAESL-AFMKATVAKRIVNPYYRIILMGIVISIGLLVIH 271
L K+ ++A+ F LV + + K + + N R + G++I +I
Sbjct: 214 SALTFSKVILLAIVFSLVSVLYCQLRHGIHKLSEKYTMKNHTVRAFVGGLIIVALTYIIG 273
Query: 272 LDRYAGLGTNLISLSFNGGHINGYDWILKLIFTVLSISAGFQGGEVTPLFAIGSTLGAAL 331
Y G G +++ SF + Y ++ KL+FT +++ GF GGE PLF +G+TLG L
Sbjct: 274 SYDYNGRGLDMLEDSFTQD-VPPYAFLAKLVFTAVTMGMGFVGGEAIPLFFVGATLGNTL 332
Query: 332 AMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIMTIAYVLNGNS 391
LP+ F+AA G + F N+ + E+F +++ +Y+ +G+
Sbjct: 333 HAFIDLPLSFLAALGMIVTFGGGANTPIAAFLLGVEMFNGKGIEFFFVACLTSYLFSGHH 392
Query: 392 SIYAQEVL 399
++ + +
Sbjct: 393 GLWPSQTI 400
gi|2649157 (AE001006) chloride channel, putative [Archaeoglobus fulgidus]
Length = 589
Score = 101 bits (248), Expect = 2e-20
Identities = 92/368 (25%), Positives = 165/368 (44%), Gaps = 29/368 (7%)
Query: 55 LTLAGLLIVYIYKNFGKDSQ-KGMGLIFEAGNHGREDIPKRLVPLIVFSTWLSHLFGASV 113
+ L GLL I F +++ G + A + R +I R+ + ++ ++ G S
Sbjct: 75 VALGGLLSGLIVYKFAPEAEGHGTDAVIRAFHRARGEIRARVPIVKTIASAITIGSGGSA 134
Query: 114 GREGVAVQIGGVIGHAIGK--KLSAKEAKKILLITGMAAGFAGLFQTPIAATFFAIEILM 171
GREG QIG G +G+ +LS K+ ++IL+I G+A G +F++P F IE+L
Sbjct: 135 GREGPIAQIGAGFGSFVGELLRLSDKD-RRILVICGVAGGIGSIFRSPFGGAMFGIEVLY 193
Query: 172 LGKIEYRALIPALVGSYVA---------SWTSSSLGLEKFSFAINTNIHIDPLVLLKLAV 222
E A++PA V S VA + ++ G+ IH PL A+
Sbjct: 194 KRDNEVEAIVPAFVSSIVAFIVFDVIMSYFANTPFGVLPIFKIPQVTIH-SPLEFPIYAI 252
Query: 223 IAVCFGLVGRFFAESLAFMKATVAKRI-VNPYYRIILMGIVISIGLLVIHLDRYAGLGTN 281
++V G + + + + +KR+ + PY++ + G G++ + L G+G
Sbjct: 253 VSVLAAFFGIIYVK-VFYTVHNYSKRVSIPPYFKPAIGGFF--TGVIGLFLPGVLGMGYG 309
Query: 282 LISLSFNGGHINGYDWIL---KLIFTVLSISAGFQGGEVTPLFAIGSTLGAALAMLFG-- 336
+ ++ +G +L K++ T L++ G GG P IGS +G + F
Sbjct: 310 YVQMAIDGKLAVTVMLLLIFGKIVATSLTVGTGGSGGVFAPSIVIGSMVGGFVGYSFHYL 369
Query: 337 -----LPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVF-GFGSVQYILPIMTIAYVLNGN 390
+ E G + +A + I + E+ G+ + ++ T+AY L G+
Sbjct: 370 FPNVIVQPEAFVLIGMSAFVAAVAKTPIAAILMVLEMCGGYSLLPALMTAATLAYYLAGD 429
Query: 391 SSIYAQEV 398
SIYA++V
Sbjct: 430 YSIYAEQV 437
sp|Q57753|Y305_METJA HYPOTHETICAL PROTEIN MJ0305 >gi|2128226|pir||B64338 hypothetical
protein MJ0305 - Methanococcus jannaschii >gi|1499089
(U67485) conserved hypothetical protein [Methanococcus
jannaschii]
Length = 395
Score = 83.5 bits (203), Expect = 3e-15
Identities = 86/352 (24%), Positives = 147/352 (41%), Gaps = 40/352 (11%)
Query: 38 IYITEFRDSHALYLIPFLT-LAGLLIVYIYKNFGKDSQKGMGLIFEAGNHGREDIPKR-L 95
I I F + H + LIP + +AGL + YIY+ G G+ + +A N + R L
Sbjct: 38 IIIEYFPEKHNVLLIPIVFFIAGLFVDYIYELKGS----GIDRVLKALNTNEKLTWIRGL 93
Query: 96 VPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITGMAAGFAGL 155
+ +++ ++ G S G+EG VQ + + L K +++++ITG+A G G
Sbjct: 94 LKVLLAGAVIA--VGGSAGKEGPCVQSSASFADELYRLLKLKN-RELVIITGIAGGLGGA 150
Query: 156 FQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEK--FSFAINTNIHID 213
F P+ A EI+ Y LIP ++ S V + K F+ ++ I+I
Sbjct: 151 FSAPLGTAILACEIIEHENFNYINLIPPIIASVVGYLIFYLITGRKHLFNITLSYTINIH 210
Query: 214 PLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVN-------PYYRIILMGIVISIG 266
+L ++G FF +A ++I + PY L+G ++ +
Sbjct: 211 DFLLF----------ILGAFFCSLIAHCYIKTYRKISSTFDNLKIPYCIKTLIGGIL-VA 259
Query: 267 LLVIHLDRYAGLGTNLISLSFNGGHINGYDWIL-------KLIFTVLSISAGFQGGEVTP 319
++ + G+G L F I + + K++ T ++ +G GG V P
Sbjct: 260 VISYFIPEVMGMGLTLTKELF----IMEFSLVFLVLLLIGKILATSFTVGSGTPGGLVFP 315
Query: 320 LFAIGSTLGAALAMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGF 371
IG+ G L G G + SA TN+ G + E+FGF
Sbjct: 316 SMCIGAISGIIFGSLIGDCSAPYIVLGIATTLSATTNAPLGGAVLCTEIFGF 367
gi|1552733 (U70214) similar to voltage-gated chloride channel protein
[Escherichia coli] >gi|1786350 (AE000125) putative
channel transporter [Escherichia coli]
Length = 473
Score = 82.3 bits (200), Expect = 7e-15
Identities = 82/295 (27%), Positives = 134/295 (44%), Gaps = 33/295 (11%)
Query: 110 GASVGREGVAVQIGGVIGHAIGK--KLSAKEAKKILLITGMAAGFAGLFQTPIAATFFAI 167
G +GREG VQIGG IG + +L EA+ LL TG AAG A F P+A F I
Sbjct: 142 GMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFII 201
Query: 168 E--------ILMLGKIEYRALIPALVGSYVASWTSSSLGLEKFSFA-INTNIHIDPLVLL 218
E L+ K + +I + + + + + + + K S A +NT L
Sbjct: 202 EEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNT--------LW 253
Query: 219 KLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVIS--IGLLVIHLDRYA 276
++ + FG+ G F + + M+ + + + +LMG I GLL +
Sbjct: 254 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATS 313
Query: 277 GLGTNLISLSFNGGHING---YDWILKLIFTVLSISAGFQGGEVTPLFAIGSTLGAALAM 333
G G NLI ++ G G + ++ ++I T+L S+G GG P+ A+G+ LG A M
Sbjct: 314 GGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGM 373
Query: 334 L-------FGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIM 381
+ + L A AG ++ +A+ + I + E+ + Q ILP++
Sbjct: 374 VAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM--TDNYQLILPMI 426
sp|P37019|YADQ_ECOLI HYPOTHETICAL 46.0 KD PROTEIN IN HEML-PFS INTERGENIC REGION
>gi|628807|pir||S45224 voltage-gated chloride channel
protein homolog - Escherichia coli
>gi|473814|dbj|BAA05603| (D26562) 'ORF' [Escherichia
coli]
Length = 436
Score = 82.3 bits (200), Expect = 7e-15
Identities = 82/295 (27%), Positives = 134/295 (44%), Gaps = 33/295 (11%)
Query: 110 GASVGREGVAVQIGGVIGHAIGK--KLSAKEAKKILLITGMAAGFAGLFQTPIAATFFAI 167
G +GREG VQIGG IG + +L EA+ LL TG AAG A F P+A F I
Sbjct: 105 GMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFII 164
Query: 168 E--------ILMLGKIEYRALIPALVGSYVASWTSSSLGLEKFSFA-INTNIHIDPLVLL 218
E L+ K + +I + + + + + + + K S A +NT L
Sbjct: 165 EEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNT--------LW 216
Query: 219 KLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVIS--IGLLVIHLDRYA 276
++ + FG+ G F + + M+ + + + +LMG I GLL +
Sbjct: 217 LYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATS 276
Query: 277 GLGTNLISLSFNGGHING---YDWILKLIFTVLSISAGFQGGEVTPLFAIGSTLGAALAM 333
G G NLI ++ G G + ++ ++I T+L S+G GG P+ A+G+ LG A M
Sbjct: 277 GGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGM 336
Query: 334 L-------FGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIM 381
+ + L A AG ++ +A+ + I + E+ + Q ILP++
Sbjct: 337 VAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEM--TDNYQLILPMI 389
gb|AAD53928.1|AF179611_12 (AF179611) chloride channel protein [Zymomonas mobilis]
Length = 425
Score = 71.0 bits (171), Expect = 2e-11
Identities = 80/320 (25%), Positives = 141/320 (44%), Gaps = 32/320 (10%)
Query: 93 KRLVPLIVFSTWLSHLF--------GASVGREGVAVQIGGVIGH--AIGKKLSAKEAKKI 142
KR++P F T + H+ G+ +GRE ++G +IG A LS + ++I
Sbjct: 96 KRVMP---FWTTIIHVLLQIVTVGLGSPLGREVAPRELGSLIGERFAFWGGLSENQ-RRI 151
Query: 143 LLITGMAAGFAGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEKF 202
L+ G AGFA ++ P++ FA+E L++ ++ L + A LG
Sbjct: 152 LVACGAGAGFASVYNVPLSGALFALEALLMTWASPVVIVALLTSALSARMAWILLG---- 207
Query: 203 SFAINTNIHIDPL--VLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMG 260
N+ ++ P V +L ++A+ G + A F + + R+ L+
Sbjct: 208 ----NSMVYHVPAWPVDTRLMLLALLAGPIFGIAAHYFRFWSQKITASRIKDNRRLALVA 263
Query: 261 IV--ISIGLLVIHLDRYAGLGTNLISLSFN---GGHINGYDWILKLIFTVLSISAGFQGG 315
I+ +IGLL + G G +SL+FN G G + K++ L++ AG GG
Sbjct: 264 ILCFAAIGLLSMWFPEILGNGKGPVSLAFNDNLSGMKAGELFCFKILAVFLALWAGAYGG 323
Query: 316 EVTPLFAIGSTLGAALAMLFGLPVEFVAAAGYVSIFSAA--TNSYFGPIFIAAEVFGFGS 373
+TP + G+ L + L+ + + V + I AA +S PI A V F
Sbjct: 324 LLTPGISFGALLAVVIGHLWNMWLPPVPIGAFAIIGGAAFLASSMKMPITAMALVIEFAR 383
Query: 374 VQYILPIMTIAYVLNGNSSI 393
+ ++ IA+ + G+ +I
Sbjct: 384 TGHDF-LIPIAFAVAGSIAI 402
emb|CAB49446.1| (AJ248284) hypothetical protein [Pyrococcus abyssi]
Length = 379
Score = 67.5 bits (162), Expect = 2e-10
Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 31/286 (10%)
Query: 88 REDIPKRLVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITG 147
R+ P R++ + L+ + G S+G+ G ++Q+GG I KK K+L+ G
Sbjct: 85 RDYNPVRVIVGKIIGHLLALISGLSLGKAGPSIQLGGSIAMIFSKK-------KVLIGAG 137
Query: 148 MAAGFAGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEKFSFAIN 207
AAG + F+ PIA EIL + PA++ Y+A + S + + F +
Sbjct: 138 AAAGLSAAFEAPIAGIVSTFEILRI-----EVTPPAIL--YLAIPSLISALISHYLFPVR 190
Query: 208 TNIHIDPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVISIGL 267
+ P + + G + + + +K +++ P++ ++ ++ + L
Sbjct: 191 PTLVYTPSEAKDYQYLILLGVTTGAYSSLFIWLIKHIRKIKLIIPFFESWILLPIMPLAL 250
Query: 268 LVIHLDRYAGLGTNLISLSFNGGHINGYDWIL-----KLIFTVLSISAGFQGGEVTPLFA 322
G G LI F G G ++L K I T+LS ++G GG P A
Sbjct: 251 ---------GGGHALIFSLFTGNF--GITFLLLLLLLKSIHTILSYTSGAPGGLFLPSLA 299
Query: 323 IGSTLGAALAMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEV 368
IG+ +G FG+ FV AG V + S + + AE+
Sbjct: 300 IGAIIGKLFVETFGVSNTFV-LAGMVGVLSGTLRAPMTGAILMAEI 344
dbj|BAA80554.1| (AP000061) 358aa long hypothetical protein [Aeropyrum pernix]
Length = 358
Score = 66.7 bits (160), Expect = 3e-10
Identities = 45/153 (29%), Positives = 75/153 (48%), Gaps = 3/153 (1%)
Query: 51 LIPFLTLAGLLI--VYIYKNFGKDSQKGMGLIFEAGNHGREDIPKRLVPLIVFSTWLSHL 108
L P + G L+ + +Y+ + G +A + IP R + ++ +
Sbjct: 88 LAPLAIVGGALVSSLIVYRFSPEAEGHGTDAAVKAFHRRAAQIPFRTGVVKAVASSILVG 147
Query: 109 FGASVGREGVAVQIGGVIGHAIGKKLSAK-EAKKILLITGMAAGFAGLFQTPIAATFFAI 167
G S G EG +VQIG IG I + L + E +++ L+ GM+ + LF +P+ + FFA
Sbjct: 148 TGGSGGVEGPSVQIGASIGSTIARLLRLRIEDRRVALVAGMSGALSALFHSPLGSAFFAA 207
Query: 168 EILMLGKIEYRALIPALVGSYVASWTSSSLGLE 200
E+L +E +AL+PA V S A ++ G E
Sbjct: 208 EVLYKRDLEVQALVPAFVSSITAYTLATVAGYE 240
dbj|BAA29100.1| (AP000001) 370aa long hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 65.2 bits (156), Expect = 1e-09
Identities = 71/306 (23%), Positives = 140/306 (45%), Gaps = 42/306 (13%)
Query: 92 PKRLVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITGMAAG 151
P +++ +F + L + G S+GR G +VQ+GG + +G+ L+ G+AAG
Sbjct: 87 PVKVILTKIFGSLLVIMSGFSLGRVGPSVQLGGSLAMVLGEG---------LIDAGIAAG 137
Query: 152 FAGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEKF--SFAINTN 209
A + PI F +E+ + Y+ ++ L S A+ S + +F SF +
Sbjct: 138 VAATLEAPITGVVFTLEVFKIRPTLYK-IVTLLFASVPAALVSKLMFPMRFWPSFEYSYG 196
Query: 210 IHIDPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKR-------IVNPYYRIILMGIV 262
+ D L++L L + GL F + L ++ + KR ++ ++ I+L+ V
Sbjct: 197 L-FDYLLILLLGIFT---GLYSSAFMQLLFKLRKFLVKRSYKFVPSLLFSWFFILLLPQV 252
Query: 263 ISIGLLVIHLDRYAGLGTNLISLSFNGGHINGYDWILKLIFTVLSISAGFQGGEVTPLFA 322
+ G L++ ++ + +++SL I ILK I T+ S ++ GG P A
Sbjct: 253 LGGGKLLL----WSLMKESIVSLD-----ILILLLILKSIHTLFSAASDAPGGLFCPSLA 303
Query: 323 IGSTLGAALAMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIMT 382
+G+ +G+ L F +P G V + + + PI + +F G ++P +
Sbjct: 304 MGAIIGSILGKKFVVP-------GMVGVLAGVYKAPLTPILL---MFETGVTPKVIPGLL 353
Query: 383 IAYVLN 388
++ +++
Sbjct: 354 LSSLIS 359
emb|CAB07049| (Z92770) hypothetical protein Rv0143c [Mycobacterium tuberculosis]
Length = 492
Score = 64.0 bits (153), Expect = 2e-09
Identities = 90/375 (24%), Positives = 156/375 (41%), Gaps = 27/375 (7%)
Query: 50 YLIPFLTLAGLLI--VYIYKNFGKDSQKGMGLIFEAGNHGREDIPKRLVPLIVFSTWLSH 107
+ IP +T G ++ + + K + + G E+ + I R V + + ++ L+
Sbjct: 104 WAIPLVTTGGAVLSALIVAKLAPEATGHGTDEAIESVHGDPRAIRGRAVLVKMVASALTI 163
Query: 108 LFGASVGREGVAVQIGGVIGHAIGKKLS-AKEAKKILLITGMAAGFAGLFQTPIAATFFA 166
G S GREG QI + ++L+ + E + + G+ AG +F P+
Sbjct: 164 GSGGSGGREGPTAQISAGFCSLLTRRLNLSNEDGRTAVALGIGAGIGAIFAAPLGGAALG 223
Query: 167 IEILMLGKIEYRALIPALVGSYVA-SWTSSSLGLEKFSFAINTNIHIDPL-VLLKLAVIA 224
I +YR L+P + S A + + LG + I+ + LL VI
Sbjct: 224 ASIPYRDDFDYRNLLPGFIASGTAYAVLGAFLGFDPLFGYIDAEYRFEKAWPLLWFVVIG 283
Query: 225 VCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVISIGLLVIHLDRYAGLGTNLIS 284
+ VG +A A + P + + G+++ GLL + + + G
Sbjct: 284 LIAAAVGYLYARVFHASVAITRRLPGGPVLKPAIGGLLV--GLLGLPIPQILSSGYGWAQ 341
Query: 285 LSFNGGHINGYD-WIL------KLIFTVLSISAGFQGGEVTPLFAIGSTLGAA------L 331
L+ + G + WI+ K++ T LSI G GG P IG+ +GAA L
Sbjct: 342 LAADRGTLLSIPLWIVIVLPIAKILATSLSIGTGGSGGLFGPGIVIGAFVGAAIWRLGEL 401
Query: 332 AMLFGLPVE---FVAAAGYVSIFSAATNSYFGPIFIAAEVFG-FGSVQYILPIMTIAYVL 387
L G+P E FV A ++ F + + + + + AE+ G F V + + IA +L
Sbjct: 402 TELPGVPHEPGIFVVVA-MMACFGSVSRAPLAVMIMVAEMTGSFSVVPGAIIAVGIAALL 460
Query: 388 --NGNSSIYAQEVLN 400
N +IY + LN
Sbjct: 461 LSRTNVTIYETQRLN 475
gi|1787876 (AE000255) putative chloride channel [Escherichia coli]
Length = 438
Score = 62.8 bits (150), Expect = 5e-09
Identities = 66/306 (21%), Positives = 126/306 (40%), Gaps = 23/306 (7%)
Query: 93 KRLVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITGMAAGF 152
K L L+V ++ G+++GREG + + + ++ + ++ K+ + G AAG
Sbjct: 123 KSLASLLVVTS------GSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGM 176
Query: 153 AGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEKFSFAINTNIHI 212
A ++ P+A + F E+L G + +L P ++ + VA S+ L S A+ N+ +
Sbjct: 177 AAAYRAPLAGSLFIAEVL-FGTMMLASLGPVIISAVVALLVSN---LINHSDALLYNVQL 232
Query: 213 DPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVN----PYYRIILMGIVISIGLL 268
V + + + G++ L + + V+ P +++ L G++ +GLL
Sbjct: 233 SVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLI--VGLL 290
Query: 269 VIHLDRYAGLGTNLISLSFNGG---HINGYDWILKLIFTVLSISAGFQGGEVTPL----F 321
+ G G + + I ++ KL + S +G GG TP
Sbjct: 291 SLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGL 350
Query: 322 AIGSTLGAALAMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIM 381
AIG G +L + F E G + + + PI + +LP +
Sbjct: 351 AIGMLYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGL 410
Query: 382 TIAYVL 387
IA V+
Sbjct: 411 LIACVI 416
dbj|BAA15316| (D90801) ORF_ID:o311#6; similar to [SwissProt Accession Number
P37019] [Escherichia coli] >gi|1742626|dbj|BAA15326|
(D90802) ORF_ID:o311#6; similar to [SwissProt Accession
Number P37019] [Escherichia coli]
Length = 430
Score = 62.8 bits (150), Expect = 5e-09
Identities = 66/306 (21%), Positives = 126/306 (40%), Gaps = 23/306 (7%)
Query: 93 KRLVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITGMAAGF 152
K L L+V ++ G+++GREG + + + ++ + ++ K+ + G AAG
Sbjct: 115 KSLASLLVVTS------GSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGM 168
Query: 153 AGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGLEKFSFAINTNIHI 212
A ++ P+A + F E+L G + +L P ++ + VA S+ L S A+ N+ +
Sbjct: 169 AAAYRAPLAGSLFIAEVL-FGTMMLASLGPVIISAVVALLVSN---LINHSDALLYNVQL 224
Query: 213 DPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVN----PYYRIILMGIVISIGLL 268
V + + + G++ L + + V+ P +++ L G++ +GLL
Sbjct: 225 SVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLI--VGLL 282
Query: 269 VIHLDRYAGLGTNLISLSFNGG---HINGYDWILKLIFTVLSISAGFQGGEVTPL----F 321
+ G G + + I ++ KL + S +G GG TP
Sbjct: 283 SLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGL 342
Query: 322 AIGSTLGAALAMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIM 381
AIG G +L + F E G + + + PI + +LP +
Sbjct: 343 AIGMLYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGL 402
Query: 382 TIAYVL 387
IA V+
Sbjct: 403 LIACVI 408
dbj|BAA18578| (D90915) chloride channel protein [Synechocystis sp.]
Length = 899
Score = 62.8 bits (150), Expect = 5e-09
Identities = 74/290 (25%), Positives = 127/290 (43%), Gaps = 28/290 (9%)
Query: 110 GASVGREGVAVQIGGVIGHAIGKKL-SAKEAKKILLITGMAAGFAGLFQTPIAATFFAIE 168
G ++GR V IG + + + ++ E ++ ++ G AAG A F TPIA F +E
Sbjct: 131 GMTLGRRAPTVHIGAALAAQLSRWFPTSPEHRRQMIAAGAAAGLAAGFTTPIAGVLFVVE 190
Query: 169 ILMLGKIEYRALIPALVGSYVASWT-----SSSLGLEKFSFAINTNIHIDPLVLLKLAVI 223
LM + L A+V S+V + T SS L L S + + + + ++
Sbjct: 191 ELM-RDVSSLTLETAIVASFVGAVTSLVFQSSDLNL-AHSLSNSPTVRFTTGEIPFYLLL 248
Query: 224 AVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIV--ISIGLLVIHLDRYAGLGTN 281
+ G++G S+ ++ K+ ++ RI ++G++ ++I LL AGL
Sbjct: 249 GILAGILGVLLNRSILSLQNWQRKQNLSLVIRIGVVGLISGVAIALLPSFFRDNAGLREF 308
Query: 282 LISLSFNGGHINGYDWILKL----IFTVLSISAGFQGGEVTPLFAIGSTLGAALAMLFG- 336
+ S G ++ + +L L I T+L+ S GG P +GS LG L FG
Sbjct: 309 VTS-----GELSWHQVVLTLVAHFILTILAYSTDAPGGLFAPALVMGSALG-YLVGEFGS 362
Query: 337 -----LPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIM 381
+ A AG + F++ I I E+ G+ +LP+M
Sbjct: 363 YWQDQVTQTTFALAGMGAFFTSVVRVPVTAIIIVFEL--TGNFNVVLPLM 410
gb|AAF11316.1|AE002017_7 (AE002017) hypothetical protein [Deinococcus radiodurans]
Length = 548
Score = 60.5 bits (144), Expect = 2e-08
Identities = 71/302 (23%), Positives = 117/302 (38%), Gaps = 14/302 (4%)
Query: 100 VFSTWLSHLFGASVGREGVAVQIGGVIGHAIGK--KLSAKEAKKILLITGMAAGFAGLFQ 157
+ T L+++ G VGR+ + V +G + +G +L A E + +L++ G AAG +
Sbjct: 129 LLGTLLAYVSGLLVGRDSLFVLLGQLGTRVLGSLTRLDAGELR-MLMLAGAAAGLGAVLH 187
Query: 158 TPIAATFFAIEILMLG-KIEYRALIPALVGSYVASWTSSSLGLEKFSFAINTNI----HI 212
P+AA E+L + E+ L+P ++ + VAS+ L F FA I +
Sbjct: 188 APLAAAVLVAEVLYRRFEFEFEVLMPCVLAA-VASYAVYGLA---FGFAPLLRIPYGGQL 243
Query: 213 DPLVLL-KLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVISIGLLVIH 271
PL LA +A+ G + + A++ P + I LL
Sbjct: 244 PPLTQAPALAAVALVVTAAGWLLLHACRLLPASLTDGRWRPVLGAVFGLATAGIALLATP 303
Query: 272 LDRYAGLGTNLISLSFNGGHINGYDWILKLIFTVLSISAGFQGGEVTPLFAIGSTLGAAL 331
G G + LS G G + + + L F GG V P IG LG L
Sbjct: 304 TVLGDGSGWMQVGLSGFMGADAGAQGLWRWLLLALGARLAF-GGSVLPTVGIGGLLGVGL 362
Query: 332 AMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEVFGFGSVQYILPIMTIAYVLNGNS 391
+ + G V+ + N G +A G + L +A+ ++G
Sbjct: 363 SQVLHTDPAVAGLIGAVAFLTVTLNVPLGATLLAVAWGGDTMLPLALLAAGLAHAISGEP 422
Query: 392 SI 393
I
Sbjct: 423 GI 424
gb|AAC24628.1| (AE001274) CCP; L2602.3 [Leishmania major]
Length = 772
Score = 52.3 bits (123), Expect = 7e-06
Identities = 93/394 (23%), Positives = 157/394 (39%), Gaps = 62/394 (15%)
Query: 44 RDSHALYLIPFL------TLAGLLIVYIYKNFGKDSQKGMGLI----FEAGNHGREDIPK 93
RD+H + + F+ T+A + Y+ K + + G G+ +G+H + +
Sbjct: 151 RDNHVVAFVDFVMYVSFSTMAAVTAAYLCKTYAPYASGG-GIAEVKTIVSGHHVKRYLGG 209
Query: 94 RLVPLIVFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSA--KEAKKILLIT-GMAA 150
+ V S G +VG+EG V IG +G I L + +EAK+ LIT G
Sbjct: 210 WTLITKVVGMCFSTGSGLTVGKEGPFVHIGACVGGIISGALPSYQQEAKERELITAGAGG 269
Query: 151 GFAGLFQTPIAATFFAIEILMLGKIEYRALIPALVGSYVASWTSSSLGL------EKFSF 204
G A F P+ FA+E + ++AL+ AL+ A S + L +FS
Sbjct: 270 GMAVAFGAPVGGVIFALEDVST-SYNFKALMAALICGVTAVLLQSRVDLWHTGRIVQFSV 328
Query: 205 AINTNIHIDPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVIS 264
N H L + A I G +G F+ + K + +RI+ + +V +
Sbjct: 329 NYQHNWHFFELPM--FAAIGCFGGFMGSTFSVVNLHVGRWRKKHL--RQWRIVEVAVVAA 384
Query: 265 IGLLVIHLDRY-AGLGTNLISLSFNGGHING-----YDWILKLIFTVL------------ 306
+ +V L Y +G L+ F +G D L+ F++L
Sbjct: 385 VTGVVNFLTPYGSGSMLELLGDCFQDCTPSGTMEMCEDSDLRAFFSLLVTATAKFAMFAY 444
Query: 307 SISAGFQGGEVTPLFAIGSTLGAALAMLFGLPVEFVAAA---------------GYVSIF 351
++ G + P IG+ G A M+F E A++ G +I
Sbjct: 445 TVGTFLPAGILVPSLTIGALYGRAFGMMFRALQETYASSYIFTECYDQDLCVIPGVYAIV 504
Query: 352 SAA---TNSYFGPIFIAAEVFGF-GSVQYILPIM 381
AA T I +A +F GS++Y++P++
Sbjct: 505 GAAAMLTGVTHMTICLAIIMFELTGSLEYMVPVI 538
gi|1788733 (AE000327) orf, hypothetical protein [Escherichia coli]
Length = 418
Score = 50.8 bits (119), Expect = 2e-05
Identities = 73/339 (21%), Positives = 136/339 (39%), Gaps = 37/339 (10%)
Query: 49 LYLIPFLTLAGLLIVYIYKNFGKDSQKGMGLIFEAGNHGRED---------IPKRLVPLI 99
L++I LTL G+ + G+ + F G+ G + +P +P +
Sbjct: 57 LWIIGVLTLTGIAV-------------GLVIRFSQGHAGPDPACEPLIGAPVPPSALPGL 103
Query: 100 VFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLITGMAAGFAGLFQTP 159
+ + L G S+G E + + + AIG +L + + I A LF TP
Sbjct: 104 IVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTP 163
Query: 160 IAATFFAIEILMLGKIE---YRALIPALVGSYVASWTSSSLGLEKFSFAINTNIHIDPLV 216
+AA + L G E + L L+ + + T+ FS I ++
Sbjct: 164 VAAALIFSQTLN-GSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTD 222
Query: 217 LLK---LAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVISI-GLLVIHL 272
+L +A IA+ G+V + L M ++ NP + + G ++ I G++ +
Sbjct: 223 ILSGAIVAAIAIAAGMVAVWCLPRLHAM----MHQMKNPVLVLGIGGFILGILGVIGGPV 278
Query: 273 DRYAGLGTNLISLSFNGGHINGYDW--ILKLIFTVLSISAGFQGGEVTPLFAIGSTLGAA 330
+ GL ++ + Y ++KL V++ ++GF+GG + P +G LG
Sbjct: 279 SLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLM 338
Query: 331 L-AMLFGLPVEFVAAAGYVSIFSAATNSYFGPIFIAAEV 368
L + +P + + I T + +F+AA V
Sbjct: 339 LHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVV 377
gi|3953478 (AC002328) F22O2.23 [Arabidopsis thaliana]
Length = 827
Score = 46.9 bits (109), Expect = 3e-04
Identities = 70/324 (21%), Positives = 120/324 (36%), Gaps = 71/324 (21%)
Query: 47 HALYLIPFL------TLAGLLIVYIYKNFGKDSQKGMGLIFEAGNHGREDIPKRLVPLIV 100
H + LIP + GLL + SQ+ GL F AG + + K + +
Sbjct: 182 HRILLIPVTGGVIVGMMHGLLEILDQIRQSNSSQR-QGLDFLAGIY---PVIKAIQAAVT 237
Query: 101 FSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAKEAKKILLIT-GMAAGFAGLFQTP 159
T G S+G EG +V IG + + ++I L G A+G A F
Sbjct: 238 LGT------GCSLGPEGPSVDIGKSCANGFALMMENNRERRIALTAAGAASGIASGFNAA 291
Query: 160 IAATFFAIEILMLGKIEYRA--------LIPALVGSYVAS---WTSSSLGLEKFSFAINT 208
+A FFAIE ++ + ++ +++ S V++ T S+ + +
Sbjct: 292 VAGCFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSNALLGTQSAFTVPSYDLKSAA 351
Query: 209 NIHIDPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRIVNPYYRIILMGIVISIGLL 268
+ + ++ + ++V F + +F +S F+K GL
Sbjct: 352 ELPLYLILGMLCGAVSVVFSRLVTWFTKSFDFIKD--------------------KFGLP 391
Query: 269 VIHLDRYAGLGTNLISLSFNGGHINGYD-----------------WIL------KLIFTV 305
I GLG +I+L + G G+ W+L K++ T
Sbjct: 392 AIVCPALGGLGAGIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAKVVATA 451
Query: 306 LSISAGFQGGEVTPLFAIGSTLGA 329
L +G GG P IG+ +GA
Sbjct: 452 LCKGSGLVGGLYAPSLMIGAAVGA 475
emb|CAA71369| (Y10338) chloride channel Stclc1 [Solanum tuberosum]
Length = 764
Score = 42.2 bits (97), Expect = 0.008
Identities = 45/199 (22%), Positives = 82/199 (40%), Gaps = 35/199 (17%)
Query: 100 VFSTWLSHLFGASVGREGVAVQIGGVIGHAIGKKLSAK--------------EAKKILLI 145
+F + L G VG+EG V G I + +G+ S K ++ L+
Sbjct: 182 IFGSILGVSAGFVVGKEGPMVHTGACIANLLGQGGSRKYHLTWKWLKYFKNDRDRRDLIT 241
Query: 146 TGMAAGFAGLFQTPIAATFFAIE--------ILMLGKIEYRALIPALVGSYVASWTSSSL 197
G AAG A F+ P+ FA+E L+ A++ ++ S + +
Sbjct: 242 CGAAAGVAAAFRAPVGGVLFALEEIASWWRSALLWRTFFTTAIVAMVLRSLIQFCRGGNC 301
Query: 198 GL----EKFSFAINTNIH----IDPLVLLKLAVIAVCFGLVGRFFAESLAFMKATVAKRI 249
GL F +N+ + ID L L+ + V+ G + + + + A + +R
Sbjct: 302 GLFGQGGLIMFDVNSGVSNYNTIDVLALIFIGVLGGLLGSLYNYLVDKVLRTYAVINER- 360
Query: 250 VNPYYRIILMGIVISIGLL 268
P ++I+L V+S+ +L
Sbjct: 361 -GPAFKILL---VMSVSIL 375
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.328 0.145 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100756626
Number of Sequences: 457798
Number of extensions: 4182932
Number of successful extensions: 11649
Number of sequences better than 1.0e-02: 18
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 11610
Number of HSP's gapped (non-prelim): 21
length of query: 403
length of database: 140,871,481
effective HSP length: 53
effective length of query: 350
effective length of database: 116,608,187
effective search space: 40812865450
effective search space used: 40812865450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 97 (42.2 bits)