Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA21508| (AB000631) unnamed protein product [Streptoco... 177 2e-44
emb|CAA72253| (Y11463) ORF3 [Streptococcus pneumoniae] 167 3e-41
emb|CAB01838| (Z79580) putative orf [Bacillus subtilis] >gi... 130 4e-30
emb|CAB50560.1| (AJ248288) DTDP-4-KETO-L-RHAMNOSE REDUCTASE... 99 1e-20
dbj|BAA29384.1| (AP000001) 176aa long hypothetical protein ... 95 2e-19
gb|AAD35572.1|AE001726_6 (AE001726) conserved hypothetical ... 88 2e-17
dbj|BAA80989.1| (AP000063) 141aa long hypothetical protein ... 76 8e-14
emb|CAA16008| (AL021184) hypothetical protein Rv1466 [Mycob... 76 1e-13
pir||S72762 B1496_C2_194 protein - Mycobacterium leprae >gi... 75 2e-13
gb|AAF11715.1|AE002050_1 (AE002050) conserved hypothetical ... 73 6e-13
gi|2253628 (U82227) unknown [Sulfolobus solfataricus] >gi|6... 73 7e-13
emb|CAB50744.1| (AL096839) conserved hypothetical protein [... 65 2e-10
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|699143 (U15180)... 53 5e-07
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|3261828|emb|CAB... 52 2e-06
dbj|BAA75331.1| (AB011837) similar to B.subtilis yitW gene(... 50 5e-06
emb|CAB46420.1| (AL096743) hypothetical protein [Streptomyc... 50 6e-06
gb|AAF10574.1|AE001952_2 (AE001952) mrp protein [Deinococcu... 50 8e-06
pir||H64440 hypothetical protein homolog MJ1129 - Methanoco... 50 8e-06
gi|2622793 (AE000925) conserved protein [Methanobacterium t... 48 2e-05
gb|AAF11928.1|AE002069_2 (AE002069) phenylacetic acid degra... 48 2e-05
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|1001155|dbj|BAA... 46 7e-05
dbj|BAA21508| (AB000631) unnamed protein product [Streptococcus mutans]
Length = 111
Score = 177 bits (445), Expect = 2e-44
Identities = 88/111 (79%), Positives = 99/111 (88%), Gaps = 1/111 (0%)
Query: 1 MADK-YTEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTM 59
MADK YT E++ +IKD+IL ALE VIDPELGIDI+NLGL+Y+I FED+G TEI MTLTTM
Sbjct: 1 MADKNYTPEEIAKIKDRILEALEMVIDPELGIDIVNLGLIYDIRFEDSGRTEIDMTLTTM 60
Query: 60 GCPLADLLTEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGIR 110
GCPLADLLT+QIHDALK+VPEV +I V LVW PAWTVDKMSRYARIALGIR
Sbjct: 61 GCPLADLLTDQIHDALKDVPEVLDIDVKLVWSPAWTVDKMSRYARIALGIR 111
emb|CAA72253| (Y11463) ORF3 [Streptococcus pneumoniae]
Length = 109
Score = 167 bits (418), Expect = 3e-41
Identities = 81/107 (75%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
Query: 5 YTEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFE-DNGFTEIKMTLTTMGCPL 63
YTEEQ+ IK +IL+ALE VIDPELGIDI+NLGL+YEI F+ D G TEI MTLTTMGCPL
Sbjct: 3 YTEEQIENIKTRILTALEEVIDPELGIDIVNLGLIYEIRFDGDTGQTEIDMTLTTMGCPL 62
Query: 64 ADLLTEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGIR 110
ADLLT+QI+DA+ EVPEV + +V LVWYPAWTV+KMSRYARIALGI+
Sbjct: 63 ADLLTDQIYDAMIEVPEVTDTEVKLVWYPAWTVEKMSRYARIALGIK 109
emb|CAB01838| (Z79580) putative orf [Bacillus subtilis] >gi|2145417|emb|CAA70634|
(Y09476) YitW [Bacillus subtilis]
>gi|2633452|emb|CAB12956| (Z99109) similar to
hypothetical proteins [Bacillus subtilis]
Length = 102
Score = 130 bits (323), Expect = 4e-30
Identities = 55/98 (56%), Positives = 80/98 (81%)
Query: 13 IKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIH 72
+K+ I+ ALE V+DPELG+DI+NLGLVY++ +++G T I MTLT+MGCPLA ++ +++
Sbjct: 5 LKENIMGALEQVVDPELGVDIVNLGLVYDVDMDEDGLTHITMTLTSMGCPLAPIIVDEVK 64
Query: 73 DALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGIR 110
AL ++PEV + +V++VW P WT DKMSRYA+IALGI+
Sbjct: 65 KALADLPEVKDTEVHIVWNPPWTRDKMSRYAKIALGIQ 102
emb|CAB50560.1| (AJ248288) DTDP-4-KETO-L-RHAMNOSE REDUCTASE related [Pyrococcus
abyssi]
Length = 176
Score = 99.1 bits (243), Expect = 1e-20
Identities = 46/103 (44%), Positives = 67/103 (64%)
Query: 7 EEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADL 66
EE VN +D IL L+ VIDPE+GID++NLGL+YE+ + IKMT+TT GCPL
Sbjct: 73 EENVNLTEDMILEKLKEVIDPEIGIDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLW 132
Query: 67 LTEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGI 109
+ + + + E+P V +++V L + P WT D+MS A+ LG+
Sbjct: 133 ILRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRRLGM 175
dbj|BAA29384.1| (AP000001) 176aa long hypothetical protein [Pyrococcus horikoshii]
Length = 176
Score = 95.2 bits (233), Expect = 2e-19
Identities = 43/102 (42%), Positives = 67/102 (65%)
Query: 8 EQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLL 67
E+V +D+IL L+ VIDPE+G+D++NLGL+YE+ + IKMT+TT GCPL +
Sbjct: 74 EKVKLTEDEILEKLKEVIDPEVGVDVVNLGLIYELKVNPDNTVYIKMTMTTPGCPLTLWI 133
Query: 68 TEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGI 109
+ + + E+P V +++V L + P WT D+MS A+ LG+
Sbjct: 134 LRAVEEKVLEIPGVKDVEVELTFDPPWTPDRMSEEAKRKLGM 175
gb|AAD35572.1|AE001726_6 (AE001726) conserved hypothetical protein [Thermotoga maritima]
Length = 104
Score = 88.2 bits (215), Expect = 2e-17
Identities = 39/96 (40%), Positives = 64/96 (66%)
Query: 14 KDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHD 73
K+ +L+AL+NVID ELG+D+++LGLVY+I +D ++ MT+TT CPLA ++ +
Sbjct: 9 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEE 68
Query: 74 ALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIALGI 109
A+K++ V ++V L + P WT ++MS R G+
Sbjct: 69 AIKKIEGVNNVEVELTFDPPWTPERMSPELREKFGV 104
dbj|BAA80989.1| (AP000063) 141aa long hypothetical protein [Aeropyrum pernix]
Length = 141
Score = 76.1 bits (184), Expect = 8e-14
Identities = 37/105 (35%), Positives = 67/105 (63%), Gaps = 4/105 (3%)
Query: 4 KYTEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFE---DNGFTEIKMTLTTMG 60
K E E+ D+I+ AL+ V DPE+ +++ +LGL+YE+ E + ++KM+LT +G
Sbjct: 12 KIVLEGPKELLDRIVEALKEVYDPEIPVNVYDLGLIYEVRVEGPREKPRIKVKMSLTAIG 71
Query: 61 CPLADLLTEQIHDALKE-VPEVGEIKVNLVWYPAWTVDKMSRYAR 104
CP++ L + DA++E VPE +++V +V+ P WT ++++ R
Sbjct: 72 CPVSVALPAYVEDAIREAVPEAEDVEVEVVFDPPWTPERVTPEGR 116
emb|CAA16008| (AL021184) hypothetical protein Rv1466 [Mycobacterium tuberculosis]
Length = 115
Score = 75.7 bits (183), Expect = 1e-13
Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 6 TEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNG---FTEIKMTLTTMGCP 62
T E+ + A+ +V+DPELGI++++LGLVY + +D I MTLT+ CP
Sbjct: 4 TSAPAEELLADVEEAMRDVVDPELGINVVDLGLVYGLDVQDGDEGTVALIDMTLTSAACP 63
Query: 63 LADLLTEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYAR 104
L D++ +Q AL V +I++N VW P W DK++ R
Sbjct: 64 LTDVIEDQSRSALVGSGLVDDIRINWVWNPPWGPDKITEDGR 105
pir||S72762 B1496_C2_194 protein - Mycobacterium leprae >gi|466884 (U00013)
B1496_C2_194 [Mycobacterium leprae]
>gi|2398701|emb|CAB16166| (Z99125) hypothetical protein
MLCL536.23c [Mycobacterium leprae]
Length = 115
Score = 74.9 bits (181), Expect = 2e-13
Identities = 36/93 (38%), Positives = 57/93 (60%), Gaps = 3/93 (3%)
Query: 11 NEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNG---FTEIKMTLTTMGCPLADLL 67
+E+ + A+ +V+DPELGI++++LGLVY + E+ + MTLT+ CPL D++
Sbjct: 9 DELLADVEEAMRDVVDPELGINVVDLGLVYGLGLEEGKEGMIALVDMTLTSAACPLNDVI 68
Query: 68 TEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMS 100
EQ AL V ++++N VW P W DK+S
Sbjct: 69 EEQSRSALVGSGLVSDLRINWVWNPPWGPDKIS 101
gb|AAF11715.1|AE002050_1 (AE002050) conserved hypothetical protein [Deinococcus radiodurans]
Length = 149
Score = 73.4 bits (177), Expect = 6e-13
Identities = 32/85 (37%), Positives = 54/85 (62%)
Query: 16 KILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHDAL 75
++L AL+ V DPE+ +++++LGL+Y + ++G +I MTLT++GCP+ DL+ A+
Sbjct: 51 QVLEALKVVKDPEIPVNVVDLGLIYGVDILEDGNVDITMTLTSVGCPVQDLIRADAEMAV 110
Query: 76 KEVPEVGEIKVNLVWYPAWTVDKMS 100
+ V + V VW P W DKM+
Sbjct: 111 GRLDGVEGVNVEFVWTPPWGPDKMT 135
gi|2253628 (U82227) unknown [Sulfolobus solfataricus]
>gi|6015872|emb|CAB57699.1| (Y18930) hypothetical
protein [Sulfolobus solfataricus]
Length = 132
Score = 73.0 bits (176), Expect = 7e-13
Identities = 35/104 (33%), Positives = 59/104 (56%)
Query: 1 MADKYTEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMG 60
M+ + + E K KI+ AL++V DPE+ +DI+NLGL+Y++ D+G +++ LT G
Sbjct: 1 MSSQQQKVDKEEWKKKIMEALKDVYDPEIPVDIVNLGLIYDLKINDDGDVYLRLGLTAPG 60
Query: 61 CPLADLLTEQIHDALKEVPEVGEIKVNLVWYPAWTVDKMSRYAR 104
CP+ D L + +KE ++V++ WT KM+ R
Sbjct: 61 CPVVDDLIYTVEQVIKESVPAKSVEVDIDLDTQWTPLKMTAEGR 104
emb|CAB50744.1| (AL096839) conserved hypothetical protein [Streptomyces
coelicolor]
Length = 77
Score = 64.8 bits (155), Expect = 2e-10
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 14 KDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHD 73
++++ AL +V+DPELGID++NLGL+Y I +D + MTLT+ CPL D++ +Q
Sbjct: 12 EEELREALMDVVDPELGIDVVNLGLIYGIHVDDANIATVDMTLTSAACPLTDVIEDQAKS 71
Query: 74 A 74
A
Sbjct: 72 A 72
sp|P53382|MRP_MYCLE MRP PROTEIN HOMOLOG >gi|699143 (U15180) MRP protein [Mycobacterium
leprae]
Length = 435
Score = 53.5 bits (126), Expect = 5e-07
Identities = 26/83 (31%), Positives = 45/83 (53%)
Query: 6 TEEQVNEIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLAD 65
T+ ++K + +AL VIDPEL I LG+V I E G ++ + LT CP
Sbjct: 56 TDRNAADLKSAVSTALAKVIDPELQRPITELGMVKNIDIEPGGNVQVGIYLTIASCPKKS 115
Query: 66 LLTEQIHDALKEVPEVGEIKVNL 88
+++++ A+ +VP ++V+L
Sbjct: 116 EISKRVTKAIADVPGTAAVEVSL 138
sp|O33225|MRP_MYCTU MRP PROTEIN HOMOLOG >gi|3261828|emb|CAB10925| (Z98260) mrp
[Mycobacterium tuberculosis]
Length = 390
Score = 51.5 bits (121), Expect = 2e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 12 EIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQI 71
++ I +AL VIDPEL I LG+V I +G +++ LT GCP +TE++
Sbjct: 17 DLNAAIRTALGKVIDPELRRPITELGMVKSIDTGPDGSVHVEIYLTIAGCPKKSEITERV 76
Query: 72 HDALKEVPEVGEIKVNL 88
A+ +VP ++V+L
Sbjct: 77 TRAVADVPGTSAVRVSL 93
dbj|BAA75331.1| (AB011837) similar to B.subtilis yitW gene(35%-identity) [Bacillus
halodurans]
Length = 168
Score = 50.4 bits (118), Expect = 5e-06
Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 14 KDKILSALENVIDPEL-GIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIH 72
+++I++ L+ V DPEL + + +LG+V+ + E G +KM T +GCP D++ + +
Sbjct: 6 REEIIATLKTVDDPELPSVSVFDLGMVHSVDVEQ-GLVTVKMIPTFIGCPALDMIKKDVK 64
Query: 73 DALKEVPEVGEIKVNLVWYPAWTVDKMSRYARIAL 107
A++ +P V +V+ W+ ++ + L
Sbjct: 65 RAVEVLPWVEVCEVSFSMQELWSTAAITEEGKTCL 99
emb|CAB46420.1| (AL096743) hypothetical protein [Streptomyces coelicolor]
Length = 74
Score = 50.0 bits (117), Expect = 6e-06
Identities = 22/62 (35%), Positives = 35/62 (55%), Gaps = 2/62 (3%)
Query: 39 VYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHDALKEVPEVGEIKVNLVWYPAWTVDK 98
+Y I +D + MTLT+ CPL D++ +Q A + V E+++N VW P W DK
Sbjct: 1 IYGIHVDDANIATVDMTLTSAACPLTDVIEDQAKSATDGL--VSELRINWVWMPPWGPDK 58
Query: 99 MS 100
++
Sbjct: 59 IT 60
gb|AAF10574.1|AE001952_2 (AE001952) mrp protein [Deinococcus radiodurans]
Length = 350
Score = 49.6 bits (116), Expect = 8e-06
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 13 IKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIH 72
+ D +L AL V DPEL D+++LG++ + ++K+ LTT CPL + +
Sbjct: 1 MNDALLRALSTVNDPELHRDLVSLGMIERAELSGD-VAQVKVNLTTPACPLKGQIELDVR 59
Query: 73 DALKEVPEVGEIKV 86
AL +VP V ++++
Sbjct: 60 SALLQVPGVRDVQI 73
pir||H64440 hypothetical protein homolog MJ1129 - Methanococcus jannaschii
>gi|1591764 (U67555) conserved hypothetical protein
[Methanococcus jannaschii]
Length = 95
Score = 49.6 bits (116), Expect = 8e-06
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 14 KDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHD 73
K+ +L+AL+ V DP +GI I+++GL+ ++ +D G + K+ T C + Q +
Sbjct: 4 KEDVLNALKTVADPHMGISIVDMGLIRDVEVDDEGNVKFKLIPTNPYCMSVMAMAFQAKE 63
Query: 74 ALKEVPEVGEIKVNL 88
A+K + V +++V +
Sbjct: 64 AVKSLEGVKKVEVTV 78
gi|2622793 (AE000925) conserved protein [Methanobacterium
thermoautotrophicum]
Length = 108
Score = 48.4 bits (113), Expect = 2e-05
Identities = 25/79 (31%), Positives = 42/79 (52%), Gaps = 2/79 (2%)
Query: 12 EIKDKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTL--TTMGCPLADLLTE 69
E+ +K+ AL+ V DP +GI I+ +GLV I ED G T K+T+ T GC A +
Sbjct: 15 ELLEKVKEALKKVADPHMGISIVEMGLVENIEIEDKGETIAKITIRPTNPGCMSAARMAM 74
Query: 70 QIHDALKEVPEVGEIKVNL 88
+ ++V + ++ +
Sbjct: 75 DARNVAEQVEGIDRAEITV 93
gb|AAF11928.1|AE002069_2 (AE002069) phenylacetic acid degradation protein PaaD [Deinococcus
radiodurans]
Length = 170
Score = 48.0 bits (112), Expect = 2e-05
Identities = 27/89 (30%), Positives = 49/89 (54%), Gaps = 3/89 (3%)
Query: 17 ILSALENVIDPELGI-DIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHDAL 75
+ +AL V DPE+ + I+++G+V E+ + G + + T T GCP ++ + I DA+
Sbjct: 18 VWAALSQVPDPEIPVVSIVDMGMVREVKVDGEGVS-VTFTPTFSGCPALHVIRQSIEDAV 76
Query: 76 KEVPEVGEIKVNLVWYPAWTVDKMSRYAR 104
+ + V +++V P WT D + AR
Sbjct: 77 RGL-GVNDVEVKSTLTPPWTTDSILPDAR 104
sp|P53383|MRP_SYNY3 MRP PROTEIN HOMOLOG >gi|1001155|dbj|BAA10297| (D64001) put.
ATPase [Synechocystis sp.]
Length = 353
Score = 46.5 bits (108), Expect = 7e-05
Identities = 22/74 (29%), Positives = 40/74 (53%), Gaps = 1/74 (1%)
Query: 15 DKILSALENVIDPELGIDIINLGLVYEISFEDNGFTEIKMTLTTMGCPLADLLTEQIHDA 74
D +L+ L V DPEL ++ L ++ +++ G + LTT CPL + + E A
Sbjct: 5 DAVLTVLRPVQDPELQKSLVELNMIRDVAIA-GGTVSFTLVLTTPACPLREFIVEDCEKA 63
Query: 75 LKEVPEVGEIKVNL 88
+K +P V +++V +
Sbjct: 64 VKTLPGVEKVEVKV 77
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.138 0.397
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29296763
Number of Sequences: 457798
Number of extensions: 1075039
Number of successful extensions: 3345
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3322
Number of HSP's gapped (non-prelim): 21
length of query: 110
length of database: 140,871,481
effective HSP length: 52
effective length of query: 58
effective length of database: 117,065,985
effective search space: 6789827130
effective search space used: 6789827130
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 90 (39.5 bits)