BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yheA (740 kb forward) BIO15.01
(426 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2293258 (AF008220) YtoI [Bacillus subtilis] >gi|2635392|... 281 6e-75
gi|2649320 (AE001017) inosine monophosphate dehydrogenase, ... 56 6e-07
sp|Q57647|Y188_METJA HYPOTHETICAL PROTEIN MJ0188 >gi|212817... 50 4e-05
sp|O29056|YC12_ARCFU HYPOTHETICAL PROTEIN AF1212 >gi|264936... 47 3e-04
sp|Q55458|Y039_SYNY3 HYPOTHETICAL 38.4 KD PROTEIN SLR0039 >... 43 0.005
gi|2293258 (AF008220) YtoI [Bacillus subtilis] >gi|2635392|emb|CAB14887|
(Z99118) ytoI [Bacillus subtilis]
Length = 439
Score = 281 bits (712), Expect = 6e-75
Identities = 153/433 (35%), Positives = 252/433 (57%), Gaps = 9/433 (2%)
Query: 2 SKHEEILNYIEGLEIGKQVSVRGIANRMKVADGTAYRAIKEAEILGLVAVNDRSGTVRVA 61
+KHE+IL YI+ L +G+++SVR IA MKV++GTAYRAIKEAE G V+ +R GT+R+
Sbjct: 3 TKHEQILTYIDSLPVGEKISVRRIAKEMKVSEGTAYRAIKEAENKGFVSTIERVGTIRIE 62
Query: 62 VKGQKVANRLTFGKLAEIANADVLGGLAGLEVEFSKFVISAMQRESFKRYLSPNGLVIVG 121
K ++ +LT+ ++ + + VLGG AGL +KFVI AM+ ++ RY + L+IVG
Sbjct: 63 QKKKENIEKLTYAEVVNVIDGQVLGGRAGLHKTLNKFVIGAMELDAMMRYTAAGNLLIVG 122
Query: 122 DRKEIQNLALREQNAVLVTGGFDVDQEVVNYANQLGIPLLRTSYDTFTVANRISHALANE 181
+R AL AVLVTGGF+ D +V A++L +P+L TSYDTFTVA I+ A+ ++
Sbjct: 123 NRINAHRQALEAGAAVLVTGGFNTDDSIVQLADELELPILSTSYDTFTVAAMINRAIYDQ 182
Query: 182 LIKKDIITVGDVFHQKRAT--LREEDTVKDFLDLVKKTNDSRFAXXXXXXXXXXXXAMRD 239
LIKK+I+ V D+ T L +D ++ + + +T RF +D
Sbjct: 183 LIKKEIVLVEDILTPADRTVYLSPKDKLEKWYEKNFETGHGRFPVVDDQMKIHGILTSKD 242
Query: 240 VTNKKNDTPLNKVMTRANVARASMT-VASVSQKMIYEGYDMMPVVYENYTYAGIITKSDL 298
+ + + KVMT+ V T VAS +Q M++EG +++PV + G+I++ D+
Sbjct: 243 IAGHDRNASIEKVMTKNPVTVIGKTSVASAAQMMVWEGIEVLPVTDGHQKLIGMISRQDV 302
Query: 299 LQSLQKAQEESQVAHTFSDNIANSLVEKG------SAYTVTVEPFMINSVGTIANGVFAE 352
L++LQ Q++ QV D ++ ++G + Y V P M N +GTI+ GVF
Sbjct: 303 LKALQMIQKQPQVGEKLDDIVSRGFKDEGDDKEDQTVYEYEVTPQMTNQLGTISYGVFTT 362
Query: 353 LITQVVQRVFAKKRRRNIIIEALNMHMMGAAAIDNVLEIYPKVIGETRIGAMVDCEIYHV 412
++TQ R K+R ++IE++ + + +++V+E+ P+++ R ++ E++
Sbjct: 363 ILTQAANRFLRSKKRGELVIESITIFFLKPVQMESVIEVKPRILEAGRKFGKMEVEVHSQ 422
Query: 413 NNIVAKVLVNVQL 425
+IV+K ++ VQL
Sbjct: 423 GHIVSKAMLMVQL 435
gi|2649320 (AE001017) inosine monophosphate dehydrogenase, putative
[Archaeoglobus fulgidus]
Length = 259
Score = 55.8 bits (132), Expect = 6e-07
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 8/215 (3%)
Query: 188 ITVGDVFHQKRATLREEDTVKDFLDLVKKTNDSRFAXXXXXXXXXXXXAMRDVTNKKNDT 247
I V D + TL+ ++TVKD ++LV+KT F + D+ +K +T
Sbjct: 3 IKVKDYMTKNVYTLKPDNTVKDAIELVRKTGHDSFPVVDDNMRVVGYISAVDLLDKSPET 62
Query: 248 PLNKVMTRA-NVARASMTVASVSQKMIYEGYDMMPVVYENYTYAGIITKSDLLQS-LQKA 305
+ +M+R VAR M + ++ M G+ +PVV E+ GII+ +D+++S ++K
Sbjct: 63 KIRDIMSRELYVARDFMDLRDAARVMFRTGHSKLPVVDEDNRLVGIISNADVIRSQIEKV 122
Query: 306 QEE--SQVAHTFSD-NIANSLVEKGSAYTVTVEPFMINSVGTIANGVFAELITQVVQR-V 361
+ ++ +T + ++V +G T + P G EL + + V
Sbjct: 123 DPDKVEKLKNTIEKVHGVRTVVRRGKVETARLIPTQSRIYADELKGRIHELKRGLAEPIV 182
Query: 362 FAKKRRRNIIIEALNMHMMGAAAIDNVLEIYPKVI 396
KK R +++ H + AAA V E+ +I
Sbjct: 183 VIKKDSRYYLVD--GHHRVVAAAKLGVKELDAYII 215
sp|Q57647|Y188_METJA HYPOTHETICAL PROTEIN MJ0188 >gi|2128173|pir||E64323 hypothetical
protein MJ0188 - Methanococcus jannaschii >gi|1498962
(U67475) inosine-5'-monophosphate dehydrogenase,
putative [Methanococcus jannaschii]
Length = 265
Score = 50.0 bits (117), Expect = 4e-05
Identities = 40/182 (21%), Positives = 80/182 (42%), Gaps = 12/182 (6%)
Query: 188 ITVGDVFHQKRATLREEDTVKDFLDLVKKTNDSRFAXXXXXXXXXXXXAMRDVTNKKNDT 247
+ V + +K T+ +++TVKD + L+K+T + F ++ D+ K ++
Sbjct: 3 VKVSEYMTKKVVTVSKDNTVKDVIKLLKETGHNSFPVVENGKLIGIV-SVHDIVGKDDNE 61
Query: 248 PLNKVMTRAN---VARASMTVASVSQKMIYEGYDMMPVVYENYTYAGIITKSDLLQSLQK 304
+ VMT+ V + V + M G+ +PVV E GII+ D+++S +
Sbjct: 62 KVENVMTKRKDMVVTTPDANIMDVGRIMFRTGFSKLPVVDEENNLVGIISNMDVIRSQIE 121
Query: 305 AQEESQVAHTFSDNIANSLVEKGSAYTVTVEPFMINSVGTIANGVFAELITQVVQRVFAK 364
++ +NI + G V E +N + N + A+ ++V R++
Sbjct: 122 KTTPKKL-----ENIIKTYKSLGYNLRVEKEEVDVNKLRPTQNKIHAD---ELVGRMYEL 173
Query: 365 KR 366
K+
Sbjct: 174 KK 175
sp|O29056|YC12_ARCFU HYPOTHETICAL PROTEIN AF1212 >gi|2649369 (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 352
Score = 46.9 bits (109), Expect = 3e-04
Identities = 44/163 (26%), Positives = 68/163 (40%), Gaps = 23/163 (14%)
Query: 45 ILGLVAVNDRSGTVRVAVKG--QKVANRLTFGKLAEIANADVLGGLAGLEVE-------- 94
+L V N SG ++G +KV N + I VL GL+ E+
Sbjct: 162 MLEKVVFNQVSGYKMSYIEGIARKVLNEAGLDIVGAIPRNPVLAGLSVEEIREAVSGEYL 221
Query: 95 --------FSKFVISAMQRESFKRYLSPN---GLVIVGDRKEIQNLALREQNA--VLVTG 141
+ VI AM +S RYL LV GDR ++ AL N +++TG
Sbjct: 222 IEPREEKMVEQVVIGAMSPQSALRYLREARNAALVTGGDRSDLLLTALEMPNVRCLILTG 281
Query: 142 GFDVDQEVVNYANQLGIPLLRTSYDTFTVANRISHALANELIK 184
+ Q V+ A + G+P++ T +DT T +R+ I+
Sbjct: 282 NLEPVQLVLTKAEERGVPVILTGHDTLTAVSRLESVFGRTRIR 324
sp|Q55458|Y039_SYNY3 HYPOTHETICAL 38.4 KD PROTEIN SLR0039 >gi|1001314|dbj|BAA10801|
(D64006) hypothetical protein [Synechocystis sp.]
Length = 357
Score = 43.0 bits (99), Expect = 0.005
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Query: 60 VAVKGQKVANRL----TFGKLAEIANADVLGGLAGLEVEFSKFVISAMQRESFKRYLSPN 115
+AV G +RL + +LA NA VL L++ I AM S Y
Sbjct: 197 IAVLGLLAEDRLLRSVSVRELAHQLNAKVLCSEEHLDLMVESLTIGAMNVNSALEYFRQG 256
Query: 116 ---GLVIVGDRKEIQNLALREQNAVLVTGGFDVDQE-VVNYANQLGIPLLRTSYDTFTVA 171
+V GDR ++Q AL + L+ G Q +++ A L IP+L DT T
Sbjct: 257 ENKAVVTGGDRTDLQLAALETSTSCLILTGHAGPQPLIISRAQDLEIPILSVDQDTLTTV 316
Query: 172 NRISHALANELIKKDI 187
+ A N +++ +
Sbjct: 317 EIVDQAFGNVRLQEPV 332
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.134 0.357
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94960913
Number of Sequences: 457798
Number of extensions: 3460165
Number of successful extensions: 9476
Number of sequences better than 1.0e-02: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 9466
Number of HSP's gapped (non-prelim): 7
length of query: 426
length of database: 140,871,481
effective HSP length: 62
effective length of query: 364
effective length of database: 112,488,005
effective search space: 40945633820
effective search space used: 40945633820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 97 (42.2 bits)