Score E
Sequences producing significant alignments: (bits) Value
gi|149445 (M33933) ORF1 [Lactococcus lactis] 171 1e-42
emb|CAB52221.1| (Z98171) hypothetical protein [Streptococcu... 151 9e-37
gb|AAF27303.1|AF154674_4 (AF154674) unknown [Lactococcus la... 146 2e-35
emb|CAA76201| (Y16413) transposase [Enterococcus faecium] 71 1e-12
emb|CAB63122.1| (AJ239042) transposase [Lactobacillus sanfr... 69 5e-12
dbj|BAA01401.1| (D10543) ORF2 [Bacillus stearothermophilus] 64 2e-10
emb|CAB62585.1| (AJ250958) hypothetical protein [Lactobacil... 59 8e-09
gi|1345138 (U47655) ORFA of IS3-like IS [Leuconostoc lactis] 57 3e-08
emb|CAB62586.1| (AJ250958) hypothetical protein [Lactobacil... 55 7e-08
gi|773665 (U23813) transposase [Lactococcus lactis] 53 4e-07
pir||I41306 hypothetical protein (argF-lacZ region) - Esche... 51 2e-06
pir||S60889 hypothetical protein A - Corynebacterium glutam... 50 2e-06
pir||D56273 probable transposase - Lactobacillus sake plasm... 49 5e-06
gi|2605926 (AF029727) putative [Enterococcus faecium] 48 1e-05
emb|CAA26516| (X02734) ORF1 [Lactobacillus casei] 46 4e-05
emb|CAA11523| (AJ223633) transposase [Enterococcus faecium] 45 1e-04
gi|2502075 (AF026542) TnpA [Streptococcus pyogenes] 45 1e-04
gi|995573 (U03772) putative transposase [Acinetobacter sp. ... 45 1e-04
gi|432427 (U03772) ORF1 gene product [Acinetobacter sp. ADP1] 44 2e-04
gi|2605927 (AF029727) transposase [Enterococcus faecium] 42 8e-04
pir||S21561 hypothetical protein D - Erwinia amylovora >gi|... 41 0.001
dbj|BAA18049| (D90911) transposase [Synechocystis sp.] 41 0.001
sp|P16939|YIS1_SHISO INSERTION ELEMENT IS600 HYPOTHETICAL 1... 41 0.001
gb|AAF09021.1| (AF139596) unknown [Shigella flexneri] >gi|6... 41 0.002
gb|AAD44752.1|AF141323_23 (AF141323) TnpJ [Shigella flexneri] 41 0.002
gi|3661483 (AF081284) Hp2 [Escherichia coli] >gi|6759961|gb... 41 0.002
dbj|BAA18045| (D90911) transposase [Synechocystis sp.] 41 0.002
dbj|BAA18036| (D90911) transposase [Synechocystis sp.] 41 0.002
dbj|BAA17571| (D90907) transposase [Synechocystis sp.] 41 0.002
dbj|BAA16965| (D90902) transposase [Synechocystis sp.] 41 0.002
dbj|BAA16620| (D90899) transposase [Synechocystis sp.] >gi|... 41 0.002
gi|1256600 (U38915) putative transposase [Synechocystis PCC... 41 0.002
dbj|BAA10226| (D64000) transposase [Synechocystis sp.] >gi|... 41 0.002
dbj|BAA10164| (D64000) transposase [Synechocystis sp.] 41 0.002
dbj|BAA10739| (D64005) transposase [Synechocystis sp.] 40 0.003
dbj|BAA10234| (D64000) transposase [Synechocystis sp.] >gi|... 40 0.003
dbj|BAA17797| (D90909) transposase [Synechocystis sp.] 39 0.006
emb|CAA26518| (X02734) transposase [Lactobacillus casei] 39 0.007
gi|149445 (M33933) ORF1 [Lactococcus lactis]
Length = 86
Score = 171 bits (428), Expect = 1e-42
Identities = 86/86 (100%), Positives = 86/86 (100%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL
Sbjct: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
Query: 61 KRQLAKVKEERDILKKVLTIFAEKKK 86
KRQLAKVKEERDILKKVLTIFAEKKK
Sbjct: 61 KRQLAKVKEERDILKKVLTIFAEKKK 86
emb|CAB52221.1| (Z98171) hypothetical protein [Streptococcus thermophilus]
Length = 77
Score = 151 bits (377), Expect = 9e-37
Identities = 75/76 (98%), Positives = 76/76 (99%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
M+KRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL
Sbjct: 1 MKKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
Query: 61 KRQLAKVKEERDILKK 76
KRQLAKVKEERDILKK
Sbjct: 61 KRQLAKVKEERDILKK 76
gb|AAF27303.1|AF154674_4 (AF154674) unknown [Lactococcus lactis subsp. lactis]
>gi|6739594|gb|AAF27327.1| (AF178424) unknown
[Lactococcus lactis]
Length = 77
Score = 146 bits (366), Expect = 2e-35
Identities = 72/76 (94%), Positives = 75/76 (97%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
MQKRYS+EFK+TL+ FYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL
Sbjct: 1 MQKRYSQEFKDTLLDFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
Query: 61 KRQLAKVKEERDILKK 76
KRQLAKVKEERDILKK
Sbjct: 61 KRQLAKVKEERDILKK 76
emb|CAA76201| (Y16413) transposase [Enterococcus faecium]
Length = 366
Score = 71.0 bits (171), Expect = 1e-12
Identities = 32/82 (39%), Positives = 53/82 (64%)
Query: 4 RYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLELKRQ 63
RY + FK+ ++ +G+SV L+KEY ++ ATIYKW +LY + ++ + EL+++
Sbjct: 3 RYEENFKQMIVELNQTGRSVRGLAKEYGLSEATIYKWKNLYLPDQSTGLTGKEVAELRKE 62
Query: 64 LAKVKEERDILKKVLTIFAEKK 85
A++ EE +ILKK IF+ KK
Sbjct: 63 NARLNEELEILKKAAAIFSRKK 84
emb|CAB63122.1| (AJ239042) transposase [Lactobacillus sanfranciscensis]
Length = 83
Score = 69.1 bits (166), Expect = 5e-12
Identities = 33/84 (39%), Positives = 53/84 (62%), Gaps = 1/84 (1%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
M RY KEFK+ +I Y G+S QL++EY + +T++KWI +K+ +S S + +
Sbjct: 1 MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKT-QSGKSPDEIKAM 59
Query: 61 KRQLAKVKEERDILKKVLTIFAEK 84
+++LA + EE +ILKK L A+K
Sbjct: 60 EKRLASLSEENEILKKALGFLAQK 83
dbj|BAA01401.1| (D10543) ORF2 [Bacillus stearothermophilus]
Length = 95
Score = 64.0 bits (153), Expect = 2e-10
Identities = 31/85 (36%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 4 RYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSK---SNESSVSKADFLEL 60
+++++FK+ ++ Y +G+ V LS EY V+ TIYKWI YS + +SV+ D +L
Sbjct: 9 KFNEDFKKMVVDLYGTGRKVKDLSSEYGVSEVTIYKWIKRYSPVKLEDGTSVAADDITKL 68
Query: 61 KRQLAKVKEERDILKKVLTIFAEKK 85
++Q+ +++EE +ILKK+ E K
Sbjct: 69 QKQIRRLQEENEILKKLWPYSRESK 93
emb|CAB62585.1| (AJ250958) hypothetical protein [Lactobacillus sakei]
Length = 83
Score = 58.6 bits (139), Expect = 8e-09
Identities = 29/83 (34%), Positives = 52/83 (61%), Gaps = 1/83 (1%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
M +YS EFKE++++ +G+S L+KEY+V+ +T+ KWI + N + V ++ L
Sbjct: 1 MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIK-QADPNNTKVLSSNERAL 59
Query: 61 KRQLAKVKEERDILKKVLTIFAE 83
++ ++KEE DILK+ + A+
Sbjct: 60 IKENKRLKEELDILKRAAVLMAK 82
gi|1345138 (U47655) ORFA of IS3-like IS [Leuconostoc lactis]
Length = 86
Score = 56.6 bits (134), Expect = 3e-08
Identities = 28/82 (34%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 4 RYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYS--KSNESSVSKADFLELK 61
RY KEFK++L+ ++ G+S T LS EY + +I W+ LY+ K + ++AD L+
Sbjct: 3 RYKKEFKQSLVEMHNQGRSYTDLSDEYGPSVDSIRNWVKLYAVHKVDGEKWTQADVNALQ 62
Query: 62 RQLAKVKEERDILKKVLTIFAE 83
++ K++EE +ILK+ + ++
Sbjct: 63 KENDKLREELEILKRAAVLLSK 84
emb|CAB62586.1| (AJ250958) hypothetical protein [Lactobacillus sakei]
Length = 356
Score = 55.4 bits (131), Expect = 7e-08
Identities = 28/75 (37%), Positives = 48/75 (63%), Gaps = 1/75 (1%)
Query: 1 MQKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLEL 60
M +YS EFKE++++ +G+S L+KEY+V+ +T+ KWI + N + V ++ L
Sbjct: 1 MAIKYSNEFKESIVSLSQTGRSANSLAKEYNVSVSTVTKWIK-QADPNNTKVLSSNERAL 59
Query: 61 KRQLAKVKEERDILK 75
++ ++KEE DILK
Sbjct: 60 IKENKRLKEELDILK 74
gi|773665 (U23813) transposase [Lactococcus lactis]
Length = 385
Score = 52.7 bits (124), Expect = 4e-07
Identities = 27/85 (31%), Positives = 47/85 (54%), Gaps = 4/85 (4%)
Query: 3 KRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYS----KSNESSVSKADFL 58
KRY ++FK++L+ Y +G++ T+L K+Y V+ + + KWI YS + N +K DF
Sbjct: 5 KRYDEDFKQSLVNLYQTGKTQTELCKDYGVSSSALAKWIKQYSQVRLEDNTVLTAKPDFK 64
Query: 59 ELKRQLAKVKEERDILKKVLTIFAE 83
K+ + + D+ K I A+
Sbjct: 65 NYKKGMPARGRKSDLKKSECHIHAK 89
pir||I41306 hypothetical protein (argF-lacZ region) - Escherichia coli
>gi|304900 (L20943) putative [Escherichia coli]
>gi|1552834 (U70214) hypothetical protein [Escherichia
coli] >gi|4902998|dbj|BAA77932.1| (D83536) Hypothetical
protein (argF-lacZ region) [Escherichia coli]
Length = 112
Score = 50.8 bits (119), Expect = 2e-06
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 3 KRYSKEFK-ETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLY----SKSNESSVSKADF 57
KRY +EFK E + G SV ++ D+ ++Y WI Y S + E S ++A+
Sbjct: 4 KRYPEEFKTEAVKQVVDLGYSVASVATRLDITTHSLYAWIKKYGPDSSTNKEQSDAQAEI 63
Query: 58 LELKRQLAKVKEERDILKK 76
L+++L +V +ERDILKK
Sbjct: 64 RRLQKELKRVTDERDILKK 82
pir||S60889 hypothetical protein A - Corynebacterium glutamicum
>gi|40506|emb|CAA48849| (X69104) ORF1 [Corynebacterium
glutamicum]
Length = 97
Score = 50.4 bits (118), Expect = 2e-06
Identities = 29/92 (31%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 2 QKRYSKEFKETLIAFYHSGQ--SVTQLSKEYDVAPATIYKWIDLYSKS------NESSVS 53
+K Y++EFK +A Y + S+ ++ + V AT+ W+ Y + + +SV+
Sbjct: 3 RKTYTEEFKRDAVALYENSPEASIQTIATDLGVNRATLANWVKKYGTAAPNETPSPASVN 62
Query: 54 KADFL-ELKRQLAKVKEERDILKKVLTIFAEK 84
+A+ + +L+R+ A+++EERDIL+K FAE+
Sbjct: 63 EAEQIRKLERENARLREERDILRKAAKYFAEE 94
pir||D56273 probable transposase - Lactobacillus sake plasmid
>gi|406740|emb|CAA53007| (X75164) putative transposase
[Lactobacillus sakei]
Length = 87
Score = 49.2 bits (115), Expect = 5e-06
Identities = 27/86 (31%), Positives = 51/86 (58%), Gaps = 6/86 (6%)
Query: 3 KRYSKEFKETLIAFYHSGQ-SVTQLSKEYDVAPATIYKWIDLYSKSNE----SSVSKADF 57
KRY +FK +++ + + S+ LS+EY V+PA I+ W+ +KS E + V+ +F
Sbjct: 2 KRYQDDFKASIVKMHREEKRSIRSLSEEYGVSPAAIHNWVK-GAKSVELEDGTEVTSKEF 60
Query: 58 LELKRQLAKVKEERDILKKVLTIFAE 83
+L+++ ++KEE +ILK + +
Sbjct: 61 KQLQKENQRLKEELEILKAAAVLLGK 86
gi|2605926 (AF029727) putative [Enterococcus faecium]
Length = 96
Score = 47.6 bits (111), Expect = 1e-05
Identities = 21/91 (23%), Positives = 51/91 (55%), Gaps = 6/91 (6%)
Query: 2 QKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWI------DLYSKSNESSVSKA 55
++ +S+EFK+ ++ Y +G+ ++ +EY++ + KW+ + + + + +
Sbjct: 6 RRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNLTPEQK 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEKKK 86
+ LEL+++ +++ E DILK+ IF + K
Sbjct: 66 ELLELRKRNQQLEMENDILKQAALIFGRRDK 96
emb|CAA26516| (X02734) ORF1 [Lactobacillus casei]
Length = 93
Score = 46.1 bits (107), Expect = 4e-05
Identities = 26/89 (29%), Positives = 50/89 (55%), Gaps = 4/89 (4%)
Query: 2 QKRYSKEFKETLIAF-YHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVS---KADF 57
+ RY ++FK+ + ++S + V ++ E V + +Y+W LY++ + + +A+
Sbjct: 5 RNRYDQDFKKNAVHLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAEN 64
Query: 58 LELKRQLAKVKEERDILKKVLTIFAEKKK 86
LKR+ A++ ERD+LKK FA +K
Sbjct: 65 RALKRENAELALERDMLKKAAAYFASLQK 93
emb|CAA11523| (AJ223633) transposase [Enterococcus faecium]
Length = 96
Score = 44.9 bits (104), Expect = 1e-04
Identities = 20/91 (21%), Positives = 50/91 (53%), Gaps = 6/91 (6%)
Query: 2 QKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWI------DLYSKSNESSVSKA 55
++ +S+EFK+ ++ Y +G+ ++ +EY + + KW+ + + + + +
Sbjct: 6 RRTFSQEFKQQIVNLYLAGKPRVEIIREYKLTASAFDKWVKQSKTSGSFKEKDNLTPEQK 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEKKK 86
+ L+L+++ +++ E DILK+ IF + K
Sbjct: 66 ELLKLRKRNQQLEMENDILKQAALIFGRRDK 96
gi|2502075 (AF026542) TnpA [Streptococcus pyogenes]
Length = 364
Score = 44.9 bits (104), Expect = 1e-04
Identities = 25/70 (35%), Positives = 47/70 (66%), Gaps = 3/70 (4%)
Query: 10 KETLIAFYHSGQSVTQLSKEYDVAPATIYKWIDLYS--KSNESSVSKADFLE-LKRQLAK 66
K++L+ Y +G++ ++L K+Y V+ + + KWI YS K ++SV A ++ L+++ A+
Sbjct: 1 KQSLVNLYQTGKTRSELCKDYGVSASALAKWIKQYSQVKLEDNSVLTAKQIQGLQKRNAQ 60
Query: 67 VKEERDILKK 76
++EE ILKK
Sbjct: 61 LEEENLILKK 70
gi|995573 (U03772) putative transposase [Acinetobacter sp. ADP1]
Length = 386
Score = 44.9 bits (104), Expect = 1e-04
Identities = 26/90 (28%), Positives = 51/90 (55%), Gaps = 6/90 (6%)
Query: 1 MQKRYSKEFKETLI--AFYHSGQSVTQLSKEYDVAPATIYKWI----DLYSKSNESSVSK 54
M KR+S EFK+ I A +S + + ++++ V +T+ KWI + S + S +
Sbjct: 1 MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVGSSKRQLSPEQ 60
Query: 55 ADFLELKRQLAKVKEERDILKKVLTIFAEK 84
LEL++++ +++E DILKK + +++
Sbjct: 61 QRILELEKEVKQLREANDILKKSACVLSDR 90
gi|432427 (U03772) ORF1 gene product [Acinetobacter sp. ADP1]
Length = 97
Score = 44.1 bits (102), Expect = 2e-04
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
Query: 1 MQKRYSKEFKETLI--AFYHSGQSVTQLSKEYDVAPATIYKWI----DLYSKSNESSVSK 54
M KR+S EFK+ I A +S + + ++++ V +T+ KWI + S + S +
Sbjct: 1 MAKRFSPEFKQQAIDYALSNSHEPIATIAQKLGVGYSTLDKWIREANPVGSSKRQLSPEQ 60
Query: 55 ADFLELKRQLAKVKEERDILKKVLTIF 81
LEL++++ +++E DILKK F
Sbjct: 61 QRILELEKEVKQLREANDILKKAHVYF 87
gi|2605927 (AF029727) transposase [Enterococcus faecium]
Length = 387
Score = 41.8 bits (96), Expect = 8e-04
Identities = 18/80 (22%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 2 QKRYSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKWI------DLYSKSNESSVSKA 55
++ +S+EFK+ ++ Y +G+ ++ +EY++ + KW+ + + + + +
Sbjct: 6 RRTFSQEFKQQIVNLYLAGKPRVEIIREYELTASAFDKWVKQSKTSGSFKEKDNLTPEQK 65
Query: 56 DFLELKRQLAKVKEERDILK 75
+ LEL+++ +++ E DILK
Sbjct: 66 ELLELRKRNQQLEMENDILK 85
pir||S21561 hypothetical protein D - Erwinia amylovora
>gi|40835|emb|CAA78159| (Z12167) ORF D [Erwinia
amylovora] >gi|155031 (M96392) ORF D [Plasmid pEa34]
Length = 91
Score = 41.4 bits (95), Expect = 0.001
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 1 MQKRYSKEFKETLIAF-YHSGQSVTQLSKEYDVAPATIYKWIDLYSKSNESSVSKADFLE 59
M ++S EFK + SG + Q++ + + +T+ KWI S + D L
Sbjct: 1 MSLKHSDEFKRDAVRIALTSGLTRRQVASDLSIGLSTLGKWIASISDETKIPTQDTDLLR 60
Query: 60 LKRQLAK----VKEERDILKKVLTIFAEKK 85
+L K ++EER+ILKK FA +K
Sbjct: 61 ENERLRKENRILREEREILKKAAIFFAVQK 90
dbj|BAA18049| (D90911) transposase [Synechocystis sp.]
Length = 119
Score = 41.0 bits (94), Expect = 0.001
Identities = 23/77 (29%), Positives = 42/77 (53%), Gaps = 5/77 (6%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER--DILKK 76
+ + + + R D +KK
Sbjct: 63 KDVEENPDARLIDRVKK 79
sp|P16939|YIS1_SHISO INSERTION ELEMENT IS600 HYPOTHETICAL 11 KD PROTEIN (ISO-S3 11 KD
PROTEIN) >gi|79191|pir||S03411 hypothetical protein A
(insertion sequence IS600) - Shigella sonnei
>gi|48668|emb|CAA29384| (X05952) pot. ORF A [Shigella
sonnei]
Length = 100
Score = 41.0 bits (94), Expect = 0.001
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 3 KRYSKEFKETLIAFYHSGQ-SVTQLSKEYDVAPATIYKWIDLYSK------SNESSVSKA 55
+RYSKEFK + Q S+++ + + T+ +W+ K S + ++
Sbjct: 6 QRYSKEFKAEAVRTVPENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELES 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEK 84
+ L+L++ L + + ERDILKK FA++
Sbjct: 66 EILQLRKALNEARLERDILKKATAYFAQE 94
gb|AAF09021.1| (AF139596) unknown [Shigella flexneri] >gi|6453805|gb|AAF09029.1|
(AF139596) unknown [Shigella flexneri]
Length = 100
Score = 40.6 bits (93), Expect = 0.002
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 3 KRYSKEFKETLIAFYHSGQ-SVTQLSKEYDVAPATIYKWIDLYSK------SNESSVSKA 55
+RYSKEFK + Q S+++ + + T+ +W+ K S + ++
Sbjct: 6 QRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELES 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEK 84
+ L+L++ L + + ERDILKK FA++
Sbjct: 66 EILQLRKALNEARLERDILKKATAYFAQE 94
gb|AAD44752.1|AF141323_23 (AF141323) TnpJ [Shigella flexneri]
Length = 100
Score = 40.6 bits (93), Expect = 0.002
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 3 KRYSKEFKETLIAFYHSGQ-SVTQLSKEYDVAPATIYKWIDLYSK------SNESSVSKA 55
+RYSKEFK + Q S+++ + + T+ +W+ K S + ++
Sbjct: 6 QRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELES 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEK 84
+ L+L++ L + + ERDILKK FA++
Sbjct: 66 EILQLRKALNEARLERDILKKATAYFAQE 94
gi|3661483 (AF081284) Hp2 [Escherichia coli]
>gi|6759961|gb|AAF28119.1|AF153317_15 (AF153317) InsA
[Shigella dysenteriae]
Length = 100
Score = 40.6 bits (93), Expect = 0.002
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 3 KRYSKEFKETLIAFYHSGQ-SVTQLSKEYDVAPATIYKWIDLYSK------SNESSVSKA 55
+RYSKEFK + Q S+++ + + T+ +W+ K S + ++
Sbjct: 6 QRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTVAELES 65
Query: 56 DFLELKRQLAKVKEERDILKKVLTIFAEK 84
+ L+L++ L + + ERDILKK FA++
Sbjct: 66 EILQLRKALNEARLERDILKKATAYFAQE 94
dbj|BAA18045| (D90911) transposase [Synechocystis sp.]
Length = 282
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA18036| (D90911) transposase [Synechocystis sp.]
Length = 171
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA17571| (D90907) transposase [Synechocystis sp.]
Length = 282
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA16965| (D90902) transposase [Synechocystis sp.]
Length = 119
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA16620| (D90899) transposase [Synechocystis sp.]
>gi|1652001|dbj|BAA16927| (D90901) transposase
[Synechocystis sp.] >gi|1653908|dbj|BAA18818| (D90917)
transposase [Synechocystis sp.]
Length = 282
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
gi|1256600 (U38915) putative transposase [Synechocystis PCC6803]
Length = 282
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA10226| (D64000) transposase [Synechocystis sp.]
>gi|1651758|dbj|BAA16686| (D90899) transposase
[Synechocystis sp.] >gi|1652984|dbj|BAA17901| (D90910)
transposase [Synechocystis sp.]
>gi|1653064|dbj|BAA17981| (D90910) transposase
[Synechocystis sp.] >gi|1653236|dbj|BAA18151| (D90912)
transposase [Synechocystis sp.]
>gi|1653394|dbj|BAA18308| (D90913) transposase
[Synechocystis sp.] >gi|1653686|dbj|BAA18598| (D90915)
transposase [Synechocystis sp.]
Length = 119
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA10164| (D64000) transposase [Synechocystis sp.]
Length = 282
Score = 40.6 bits (93), Expect = 0.002
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA10739| (D64005) transposase [Synechocystis sp.]
Length = 94
Score = 39.9 bits (91), Expect = 0.003
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPIKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA10234| (D64000) transposase [Synechocystis sp.]
>gi|1006590|dbj|BAA10742| (D64005) transposase
[Synechocystis sp.]
Length = 282
Score = 39.9 bits (91), Expect = 0.003
Identities = 20/70 (28%), Positives = 38/70 (53%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + A+IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKASIYRWLNRVDLSPIKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
dbj|BAA17797| (D90909) transposase [Synechocystis sp.]
Length = 119
Score = 39.1 bits (89), Expect = 0.006
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 5 YSKEFKETLIAFYHSGQSVTQLSKEYDVAPATIYKW---IDLYSKSNESSVSKADFLELK 61
YS + ++ ++A+ +G +T+ SK Y + +IY+W +DL E K D+ LK
Sbjct: 3 YSLDLRQRVVAYIEAGGKITEASKIYKIGKVSIYRWLNRVDLSPTKVERRHRKLDWEALK 62
Query: 62 RQLAKVKEER 71
+ + + + R
Sbjct: 63 KDVEENPDAR 72
emb|CAA26518| (X02734) transposase [Lactobacillus casei]
Length = 385
Score = 38.7 bits (88), Expect = 0.007
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 2 QKRYSKEFKETLIAF-YHSGQSVTQLSKEYDVAPATIYKWIDLYS---KSNESSVSKADF 57
+ RY ++FK+ + ++S + V ++ E V + +Y+W LY+ K + +A+
Sbjct: 5 RNRYDQDFKKNAVHLSFNSSKPVKIIASELGVPESALYRWRKLYTEDGKQTPFASLEAEN 64
Query: 58 LELKRQLAKVKEERDILKKVL 78
LKR+ A++ ERD+L + L
Sbjct: 65 RALKRENAELALERDMLSRRL 85
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.313 0.128 0.337
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19901355
Number of Sequences: 457798
Number of extensions: 616587
Number of successful extensions: 2438
Number of sequences better than 1.0e-02: 38
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 2417
Number of HSP's gapped (non-prelim): 39
length of query: 86
length of database: 140,871,481
effective HSP length: 58
effective length of query: 28
effective length of database: 114,319,197
effective search space: 3200937516
effective search space used: 3200937516
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 87 (38.3 bits)