Score E
Sequences producing significant alignments: (bits) Value
sp|P21335|YAAJ_BACSU HYPOTHETICAL 17.8 KD PROTEIN IN SERS-D... 132 1e-30
gb|AAD24212.1|AF086638_2 (AF086638) CumB [Pseudomonas putid... 120 9e-27
sp|P30134|YFHC_ECOLI HYPOTHETICAL 20.0 KD PROTEIN IN PURL-D... 116 1e-25
pir||S20974 hypothetical protein 178 - Escherichia coli 116 1e-25
emb|CAA18074.1| (AL022121) hypothetical protein Rv3752c [My... 115 2e-25
gi|511885 (L34743) nitrogen fixation protein [Bradyrhizobiu... 115 3e-25
emb|CAA65178| (X95938) orf150 [Porphyromonas gingivalis] 112 1e-24
gb|AAD19138| (AE001681) cytosine deaminase [Chlamydia pneum... 109 1e-23
sp|O67050|Y903_AQUAE HYPOTHETICAL PROTEIN AQ_903 >gi|298344... 104 3e-22
sp|P44931|YFHC_HAEIN HYPOTHETICAL PROTEIN HI0906 >gi|107455... 104 3e-22
dbj|BAA17764| (D90909) hypothetical protein [Synechocystis ... 104 4e-22
gb|AAC68441.1| (AE001357) cytosine deaminase [Chlamydia tra... 103 7e-22
gb|AAD49971.1|AC008075_4 (AC008075) Contains similarity to ... 101 3e-21
gb|AAF10777.1|AE001969_6 (AE001969) cell cycle protein MesJ... 90 7e-18
sp|Q9ZCC6|Y831_RICPR HYPOTHETICAL PROTEIN RP831 >gi|3861357... 81 6e-15
emb|CAB05231.1| (Z82274) JC8.4 [Caenorhabditis elegans] 71 5e-12
emb|CAA05596| (AJ002571) YkoA [Bacillus subtilis] >gi|26336... 69 2e-11
emb|CAB38514.1| (AL035637) putative uridine kinase/cytosine... 68 5e-11
emb|CAB53742.1| (AL031320) dJ20N2.1 (novel protein similar ... 67 8e-11
dbj|BAA10300| (D64001) hypothetical protein [Synechocystis ... 67 1e-10
emb|CAA07230| (AJ006764) putative deoxycytidylate deaminase... 59 2e-08
ref|NP_015387.1|FCY1| cytosine deaminase; Fcy1p >gi|2493561... 58 5e-08
ref|NP_012499.1|TAD2| tRNA-specific adenosine-34 deaminase ... 56 1e-07
emb|CAA19531.1| (AL023844) predicted using Genefinder; simi... 53 1e-06
emb|CAA88261| (Z48229) orf2 [Saccharomyces cerevisiae] 53 1e-06
emb|CAA19074.1| (AL023590) putative Cytidine and deoxycytid... 53 2e-06
gb|AAD36891.1|AE001819_14 (AE001819) riboflavin-specific de... 52 2e-06
sp|P78594|FCA1_CANAL CYTOSINE DEAMINASE (CYTOSINE AMINOHYDR... 52 2e-06
emb|CAA08869.1| (AJ009832) riboflavin-specific deaminase [T... 50 9e-06
gb|AAF27036.1|AC009177_26 (AC009177) unknown protein [Arabi... 46 1e-04
sp|O66534|RIBD_AQUAE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [... 46 2e-04
sp|P25539|RIBD_ECOLI RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [... 45 4e-04
gi|2766596 (AF002857) homologue of Bacillus subtilis ribG [... 44 6e-04
emb|CAB45891.1| (AL080282) putative protein [Arabidopsis th... 43 0.001
gb|AAF09742.1|AE001878_1 (AE001878) riboflavin-specific dea... 43 0.002
gb|AAF10182.1|AE001918_7 (AE001918) cytidine/deoxycytidylat... 41 0.007
sp|P21335|YAAJ_BACSU HYPOTHETICAL 17.8 KD PROTEIN IN SERS-DNAH INTERGENIC REGION
>gi|98366|pir||S11690 hypothetical protein 17 - Bacillus
subtilis >gi|40011|emb|CAA36389| (X52144) ORF17 (AA
1-161) [Bacillus subtilis] >gi|467408|dbj|BAA05254|
(D26185) unknown [Bacillus subtilis]
>gi|2632285|emb|CAB11794| (Z99104) similar to
hypothetical proteins [Bacillus subtilis]
>gi|227231|prf||1617102A 17kD protein [Bacillus
subtilis]
Length = 161
Score = 132 bits (330), Expect = 1e-30
Identities = 63/128 (49%), Positives = 91/128 (70%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VPIG V+V +GEIIAR N RE + R+ HAE+ I+ A +A+G WRL L+VT+EPC
Sbjct: 24 VPIGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC 83
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
MCAGA+ L+R+ +V FGA +PK G + +L +L+++R NH+ +V SG+LE+EC ++
Sbjct: 84 PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGGMLSA 143
Query: 148 FFKNRRKK 155
FF+ RKK
Sbjct: 144 FFRELRKK 151
gb|AAD24212.1|AF086638_2 (AF086638) CumB [Pseudomonas putida GB-1]
Length = 145
Score = 120 bits (297), Expect = 9e-27
Identities = 61/128 (47%), Positives = 81/128 (62%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G V+V+ G++I + FNR +D + HAE+ AI AA +A N+RL L+VT+EPC
Sbjct: 17 VPVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKAASNYRLPGSTLYVTLEPC 76
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
MCAG I +R+ +V FGA PK G S Q LNHRV VE G+L + C +I+ D
Sbjct: 77 SMCAGLIVHSRVMRVVFGALEPKAGIVQSQGQFFGQGFLNHRVIVEGGVLAEACGQILSD 136
Query: 148 FFKNRRKK 155
FFK RR K
Sbjct: 137 FFKARRAK 144
sp|P30134|YFHC_ECOLI HYPOTHETICAL 20.0 KD PROTEIN IN PURL-DPJ INTERGENIC REGION (ORF178)
>gi|296183|emb|CAA51064| (X72336) orf 178,
gef-resistance, put. membrane protein [Escherichia coli]
>gi|987637|dbj|BAA10909| (D64044) YFHC-ECOLI protein
[Escherichia coli] >gi|1033148 (U36841) alternate name
yfhC; orf178 of GenBank Accession Number X72336
[Escherichia coli] >gi|1788911 (AE000342) putative
deaminase [Escherichia coli]
Length = 178
Score = 116 bits (288), Expect = 1e-25
Identities = 56/128 (43%), Positives = 81/128 (62%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G V+V + +I +NR T HAE+ A+ + N+RL+D L+VT+EPC
Sbjct: 39 VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPC 98
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
VMCAGA+ +RI +V FGA + K G SL +L +NHRV++ GIL DECA ++ D
Sbjct: 99 VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSD 158
Query: 148 FFKNRRKK 155
FF+ RR++
Sbjct: 159 FFRMRRQE 166
pir||S20974 hypothetical protein 178 - Escherichia coli
Length = 178
Score = 116 bits (287), Expect = 1e-25
Identities = 56/127 (44%), Positives = 80/127 (62%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G V+V + +I +NR T HAE+ A+ + N+RL+D L+VT+EPC
Sbjct: 39 VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPC 98
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
VMCAGA+ +RI +V FGA + K G SL +L +NHRV++ GIL DECA ++ D
Sbjct: 99 VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSD 158
Query: 148 FFKNRRK 154
FF+ RR+
Sbjct: 159 FFRMRRQ 165
emb|CAA18074.1| (AL022121) hypothetical protein Rv3752c [Mycobacterium
tuberculosis]
Length = 152
Score = 115 bits (286), Expect = 2e-25
Identities = 60/128 (46%), Positives = 81/128 (62%), Gaps = 2/128 (1%)
Query: 28 VPIGVVIV-KDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGN-WRLLDCALFVTIE 85
VP+G V+V DG +AR N RE G T HAE+ A+ A +G+ WRL L VT+E
Sbjct: 23 VPVGAVVVGADGTELARAVNAREALGDPTAHAEILAMRLAAGVLGDGWRLEGTTLAVTVE 82
Query: 86 PCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIM 145
PC MCAGA+ LAR+ ++ FGA PK G SL+ ++ D+RLNHR +V G+L ECA +
Sbjct: 83 PCTMCAGALVLARVARLVFGAWEPKTGAVGSLWDVVRDRRLNHRPEVRGGVLARECAAPL 142
Query: 146 QDFFKNRR 153
+ FF +R
Sbjct: 143 EAFFARQR 150
gi|511885 (L34743) nitrogen fixation protein [Bradyrhizobium japonicum]
Length = 142
Score = 115 bits (284), Expect = 3e-25
Identities = 55/126 (43%), Positives = 81/126 (63%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VPIG V+V++ E+IA NR D T HAE+ A+ A + +G+ RL+DC L+VT+EPC
Sbjct: 17 VPIGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAKKIGSERLVDCDLYVTLEPC 76
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
MCAGAI AR+ ++Y+GA +PK G S + +H V SG+ E E A+++++
Sbjct: 77 TMCAGAISFARVRRLYYGAADPKGGAVESGVRFFASPTCHHAPDVYSGVGESEAARLLKE 136
Query: 148 FFKNRR 153
FF+ RR
Sbjct: 137 FFRERR 142
emb|CAA65178| (X95938) orf150 [Porphyromonas gingivalis]
Length = 150
Score = 112 bits (278), Expect = 1e-24
Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 5/126 (3%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
+PIG VIV G+I+AR NR E T HAE+ AI A A+G L DC L+VT+EPC
Sbjct: 30 IPIGAVIVCKGQIVARAHNRVERLNDPTAHAEMLAITMAVDAIGGKYLRDCTLYVTVEPC 89
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
+MCAGA+ +IP+V +GA+ PK G Y++ D L+ + VE GIL DE +M+
Sbjct: 90 LMCAGALRWTQIPRVVYGASEPKVG-----YRLFTDHALHPKCLVEGGILADESENLMRS 144
Query: 148 FFKNRR 153
FF RR
Sbjct: 145 FFAERR 150
gb|AAD19138| (AE001681) cytosine deaminase [Chlamydia pneumoniae]
Length = 155
Score = 109 bits (270), Expect = 1e-23
Identities = 56/128 (43%), Positives = 78/128 (60%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G VIVKD +IIAR N E AT HAE+ I +A Q + NWRLLD L+ T+EPC
Sbjct: 24 VPVGCVIVKDDKIIARAHNSVEKLKDATAHAEILCIGSAAQDLDNWRLLDTVLYCTLEPC 83
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
+MCAGAI LARIP++ + A + + G S I ++ H V G+ +E +M+
Sbjct: 84 LMCAGAIQLARIPRIVWAAPDVRLGAGGSWVNIFTEEHPFHTVSCTGGVCSEEAEHLMKK 143
Query: 148 FFKNRRKK 155
FF +R++
Sbjct: 144 FFVEKRRE 151
sp|O67050|Y903_AQUAE HYPOTHETICAL PROTEIN AQ_903 >gi|2983443 (AE000713) hypothetical
protein [Aquifex aeolicus]
Length = 151
Score = 104 bits (258), Expect = 3e-22
Identities = 56/126 (44%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G +IVK+GEII++ N E T HAE+ AI+ A + + L C L+VT+EPC
Sbjct: 23 VPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPC 82
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
+MC+ A+ L+RI +V F A + K GG VS++ IL++ LNHRV+ E LE E ++++ +
Sbjct: 83 IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEYYPLE-EASELLSE 141
Query: 148 FFKNRR 153
FFK R
Sbjct: 142 FFKKLR 147
sp|P44931|YFHC_HAEIN HYPOTHETICAL PROTEIN HI0906 >gi|1074556|pir||C64161 hypothetical
protein HI0906 - Haemophilus influenzae (strain Rd KW20)
>gi|1573925 (U32772) conserved hypothetical protein
[Haemophilus influenzae Rd]
Length = 173
Score = 104 bits (258), Expect = 3e-22
Identities = 50/129 (38%), Positives = 82/129 (62%), Gaps = 1/129 (0%)
Query: 28 VPIGVVIVKDGE-IIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEP 86
+P+G V+V D II +N + T HAE+ A+ + + N+RLL+ L+VT+EP
Sbjct: 31 IPVGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAKNIQNYRLLNSTLYVTLEP 90
Query: 87 CVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQ 146
C MCAGAI +RI ++ FGA++ K G S + +D ++NH ++V SG+L +EC++ +
Sbjct: 91 CTMCAGAILHSRIKRLVFGASDYKTGAIGSRFHFFDDYKMNHTLEVTSGVLAEECSQKLS 150
Query: 147 DFFKNRRKK 155
FF+ RR++
Sbjct: 151 TFFQKRREE 159
dbj|BAA17764| (D90909) hypothetical protein [Synechocystis sp.]
Length = 164
Score = 104 bits (257), Expect = 4e-22
Identities = 48/129 (37%), Positives = 79/129 (61%), Gaps = 1/129 (0%)
Query: 28 VPIGVVIVKD-GEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEP 86
+P+G V+V GE++A NR++ D HAE+ AI+ A + +G+WRL +C L+VT+EP
Sbjct: 28 IPVGAVVVNAMGEVLATGQNRKQRDQNPIAHAEMLAIQTACRRLGHWRLNECTLYVTLEP 87
Query: 87 CVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQ 146
C MC GAI AR+ + +G +PK G S++ + NH +Q G+ +++C + +Q
Sbjct: 88 CPMCTGAIIQARLGLLVYGTPDPKTGTIDSVFDLAASAASNHHLQSLGGVCQEQCREQLQ 147
Query: 147 DFFKNRRKK 155
D+F R +
Sbjct: 148 DWFAQHRAR 156
gb|AAC68441.1| (AE001357) cytosine deaminase [Chlamydia trachomatis]
Length = 163
Score = 103 bits (255), Expect = 7e-22
Identities = 54/127 (42%), Positives = 78/127 (60%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G +IV +IIAR N E T HAE+ I AA + + NWRL D L+ T+EPC
Sbjct: 26 VPVGCIIVHGDKIIARGHNSVEQLKDPTVHAEMICISAAAEYLENWRLKDTILYCTLEPC 85
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQD 147
+MCAGAI LARIP++ +GA + + G S + +K H+V+ SG+ E ++M++
Sbjct: 86 LMCAGAIQLARIPRIVWGAPDLRLGAGGSWLNVFLEKHPFHQVECCSGVCYQESEQLMKN 145
Query: 148 FFKNRRK 154
FF +RK
Sbjct: 146 FFLEKRK 152
gb|AAD49971.1|AC008075_4 (AC008075) Contains similarity to gi|3329316 cytosine deaminase from
Chlamydia trachomatis genome gb|AE001357 and contains a
PF|00383 cytidine deaminase zinc-binding region. EST
gb|W43306 comes from this gene. [Arab...
>gi|6524188|gb|AAF15073.1|AC011914_15 (AC011914) unknown
protein [Arabidopsis thaliana]
Length = 1307
Score = 101 bits (250), Expect = 3e-21
Identities = 57/144 (39%), Positives = 80/144 (54%), Gaps = 16/144 (11%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
VP+G V+V DG+IIAR +N E +T HAE+ I ++A+ +WRL D L+VT+EPC
Sbjct: 1130 VPVGAVLVHDGKIIARGYNLVEELRDSTAHAEMICIREGSKALRSWRLADTTLYVTLEPC 1189
Query: 88 VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLN----------------HRVQ 131
MCAGAI AR+ + +GA N G S ++ N ++
Sbjct: 1190 PMCAGAILQARVNTLVWGAPNKLLGADGSWIRLFPGGEGNGSEASEKPPPPVHPFHPKMT 1249
Query: 132 VESGILEDECAKIMQDFFKNRRKK 155
+ G+LE ECA+ MQ FF+ RRKK
Sbjct: 1250 IRRGVLESECAQTMQQFFQLRRKK 1273
gb|AAF10777.1|AE001969_6 (AE001969) cell cycle protein MesJ, putative/cytosine
deaminase-related protein [Deinococcus radiodurans]
Length = 600
Score = 90.5 bits (221), Expect = 7e-18
Identities = 50/129 (38%), Positives = 71/129 (54%), Gaps = 2/129 (1%)
Query: 28 VPIGVVIVK-DGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEP 86
VP+G V++ DGEI+ R N DG T HAE+ A+ A +G L DC L VT+EP
Sbjct: 442 VPVGAVVLNADGEIVGRGRNTSREDGDMTCHAELAALREAAAGLGTPYLSDCTLVVTLEP 501
Query: 87 CVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQ 146
C MC GA ARI + +GA NPK G + +L D R V+ G+ E A++++
Sbjct: 502 CPMCLGAALEARIGHIVYGAANPKAGALGGVSDLLAD-HWGWRPTVQGGVRAGEAARLLR 560
Query: 147 DFFKNRRKK 155
+ F R++
Sbjct: 561 EVFGEVRRR 569
sp|Q9ZCC6|Y831_RICPR HYPOTHETICAL PROTEIN RP831 >gi|3861357|emb|CAA15256| (AJ235273)
unknown [Rickettsia prowazekii]
Length = 148
Score = 80.8 bits (196), Expect = 6e-15
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 2/128 (1%)
Query: 28 VPIGVVIV--KDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIE 85
VP+GVVIV + +II N E HAE+ AI A + + L D ++VT+E
Sbjct: 17 VPVGVVIVCRLNQKIIVSSHNNIEEKKNPLCHAEIIAINTACNLISSKNLNDYDIYVTLE 76
Query: 86 PCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIM 145
PC MCA AI +R+ ++++GA++ K G S + +R ++ SGIL + +M
Sbjct: 77 PCAMCASAISHSRLKRLFYGASDSKHGAVESNLRYFNSNSCFYRPEIYSGILSEHSRFLM 136
Query: 146 QDFFKNRR 153
Q+FF+ R
Sbjct: 137 QEFFQRIR 144
emb|CAB05231.1| (Z82274) JC8.4 [Caenorhabditis elegans]
Length = 176
Score = 71.0 bits (171), Expect = 5e-12
Identities = 42/126 (33%), Positives = 67/126 (52%), Gaps = 4/126 (3%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNW---RLLDCALFVTI 84
VP+G V V +G I R NR G T HAE+ A+ + G L L+V++
Sbjct: 30 VPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEMVAVTEMWKEHGTGCEDLLKKSTLYVSL 89
Query: 85 EPCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKI 144
EPC+MC+ A+ I ++ +GA NP+FGG S+ E R+ VQ+ +GI + +
Sbjct: 90 EPCIMCSSAMYQLGIRKMVYGAENPRFGGVRSVGS-AEKYRMEDNVQIVAGIWSERSVAM 148
Query: 145 MQDFFK 150
++ F++
Sbjct: 149 LKTFYE 154
emb|CAA05596| (AJ002571) YkoA [Bacillus subtilis] >gi|2633671|emb|CAB13174|
(Z99110) similar to hypothetical proteins [Bacillus
subtilis]
Length = 156
Score = 69.5 bits (167), Expect = 2e-11
Identities = 37/78 (47%), Positives = 45/78 (57%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCV 88
P G VIVKDG IIA N T HAEV AI A + +G ++L DC L+ + EPC
Sbjct: 25 PFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPCP 84
Query: 89 MCAGAIGLARIPQVYFGA 106
MC GAI AR V++ A
Sbjct: 85 MCLGAIYWARPKAVFYAA 102
emb|CAB38514.1| (AL035637) putative uridine kinase/cytosine deaminase
[Schizosaccharomyces pombe]
Length = 367
Score = 67.9 bits (163), Expect = 5e-11
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 53 RATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCVMCAGAIGLARIPQVYFGATNPKFG 112
+ HAE+ AIE + + L+VT+EPC+MCA A+ I VYFG N +FG
Sbjct: 240 KGIRHAELIAIEKILEHYPASVFKETTLYVTVEPCLMCAAALKQLHIKAVYFGCGNDRFG 299
Query: 113 GTVSLYQILEDKRLNHRVQVESGILEDECAKIMQDFFKNRRKK 155
G S++ I +D+ ++ V G+ E +M++F+ K
Sbjct: 300 GCGSVFSINKDQSIDPSYPVYPGLFYSEAVMLMREFYVQENVK 342
emb|CAB53742.1| (AL031320) dJ20N2.1 (novel protein similar to yeast and bacterial
cytosine deaminase) [Homo sapiens]
Length = 159
Score = 67.1 bits (161), Expect = 8e-11
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 16/135 (11%)
Query: 28 VPIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLD---------- 77
VP+G ++V + E++ + N AT HAE+ AI+ V +W
Sbjct: 10 VPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ----VLDWCRQSGKSPSEVFEH 65
Query: 78 CALFVTIEPCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLN--HRVQVESG 135
L+VT+EPC+MCA A+ L +IP V +G N +FGG S+ I N Q G
Sbjct: 66 TVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPG 125
Query: 136 ILEDECAKIMQDFFK 150
+E ++++ F+K
Sbjct: 126 YRAEEAVEMLKTFYK 140
dbj|BAA10300| (D64001) hypothetical protein [Synechocystis sp.]
Length = 159
Score = 66.7 bits (160), Expect = 1e-10
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCV 88
P GVVIVKDGE+I N D + HAEV AI A + VG+W L ++ + E C
Sbjct: 29 PFGVVIVKDGEVIGAAGNSVIQDNDPSAHAEVNAIREACKTVGSWNLEGAVMYSSCECCP 88
Query: 89 MCAGAIGLARIPQVYFGATNPKFGGTVSLYQILED--KRLNHRVQVESGILEDECAKIMQ 146
MC ARI ++Y+ A F I +D K R+ IL++E + Q
Sbjct: 89 MCYATSYWARIDKIYYAAGWSDFEDLFDDSNISKDLEKPYPERLLAPEQILQEEAQVVWQ 148
Query: 147 DF 148
+F
Sbjct: 149 EF 150
emb|CAA07230| (AJ006764) putative deoxycytidylate deaminase [Cicer arietinum]
Length = 186
Score = 58.9 bits (140), Expect = 2e-08
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCV 88
P G VIV + E++A N T HAEV AI A + + L DC ++ + EPC
Sbjct: 53 PFGAVIVHNDEVVASCHNMVLNYTDPTAHAEVTAIREACKKLKQIELSDCEIYASCEPCP 112
Query: 89 MCAGAIGLARIPQVYFGA 106
MC GAI L+RI ++ +GA
Sbjct: 113 MCFGAIHLSRIKRLVYGA 130
ref|NP_015387.1|FCY1| cytosine deaminase; Fcy1p >gi|2493561|sp|Q12178|FCY1_YEAST CYTOSINE
DEAMINASE (CYTOSINE AMINOHYDROLASE)
>gi|1084785|pir||S54083 hypothetical protein YPR062w -
yeast (Saccharomyces cerevisiae)
>gi|805042|emb|CAA89179| (Z49219) unknown [Saccharomyces
cerevisiae] >gi|1314130|emb|CAA95006| (Z71255) unknown
[Saccharomyces cerevisiae] >gi|1762322 (U55193) cytosine
deaminase [Saccharomyces cerevisiae] >gi|2343114
(AF005261) cytosine deaminase [Saccharomyces cerevisiae]
Length = 158
Score = 57.8 bits (137), Expect = 5e-08
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 28 VPIGVVIV--KDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIE 85
VPIG ++ KDG ++ R N R G AT H E+ +E + G D L+ T+
Sbjct: 31 VPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKV-YKDTTLYTTLS 89
Query: 86 PCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIM 145
PC MC GAI + IP+ G N F Y + H V V + ++ C KIM
Sbjct: 90 PCDMCTGAIIMYGIPRCVVG-ENVNFKSKGEKYL----QTRGHEVVV---VDDERCKKIM 141
Query: 146 QDFFKNR 152
+ F R
Sbjct: 142 KQFIDER 148
ref|NP_012499.1|TAD2| tRNA-specific adenosine-34 deaminase subunit Tad2p; Tad2p
>gi|1352970|sp|P47058|YJD5_YEAST HYPOTHETICAL 28.3 KD
PROTEIN IN NSP1-KAR2 INTERGENIC REGION
>gi|1077806|pir||S56807 hypothetical protein YJL035c -
yeast (Saccharomyces cerevisiae)
>gi|1008159|emb|CAA89326| (Z49310) ORF YJL035c
[Saccharomyces cerevisiae] >gi|6434057|emb|CAB60629.1|
(AJ242667) tRNA-specific adenosine-34 deaminase subunit
Tad2p/ADAT2 [Saccharomyces cerevisiae]
Length = 250
Score = 56.2 bits (133), Expect = 1e-07
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 13/140 (9%)
Query: 29 PIGVVIVKD--GEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDC----ALFV 82
P+ + V G+++A N HAE I+ +G+ ++D L+V
Sbjct: 24 PVACIFVHTPTGQVMAYGMNDTNKSLTGVAHAEFMGIDQIKAMLGSRGVVDVFKDITLYV 83
Query: 83 TIEPCVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILED-----KRLNHRVQVES--G 135
T+EPC+MCA A+ I +V FG N +FGG ++ + D + N ES G
Sbjct: 84 TVEPCIMCASALKQLDIGKVVFGCGNERFGGNGTVLSVNHDTCTLVPKNNSAAGYESIPG 143
Query: 136 ILEDECAKIMQDFFKNRRKK 155
IL E +++ F+ + ++
Sbjct: 144 ILRKEAIMLLRYFYVRQNER 163
emb|CAA19531.1| (AL023844) predicted using Genefinder; similar to Cytidine and
deoxycytidylate deaminases zinc-binding region; cDNA EST
EMBL:C07247 comes from this gene; cDNA EST EMBL:C08551
comes from this gene [Caenorhabditis elegans]
Length = 168
Score = 53.5 bits (126), Expect = 1e-06
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 29 PIGVVIV-KDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC 87
P G V+V +G+++A+ N + T HAE+ AI+ A +A+G + L L+ + PC
Sbjct: 36 PFGAVVVDSNGKVVAKGHNMVLVTKDPTMHAEMTAIKNACKALGTFDLSGHILYTSCYPC 95
Query: 88 VMCAGAIGLARIPQVYFGAT 107
MC G AR +Y+GAT
Sbjct: 96 PMCMGGCLWARFDAIYYGAT 115
emb|CAA88261| (Z48229) orf2 [Saccharomyces cerevisiae]
Length = 213
Score = 53.1 bits (125), Expect = 1e-06
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 11/110 (10%)
Query: 57 HAEVCAIEAANQAVGNWRLLDC----ALFVTIEPCVMCAGAIGLARIPQVYFGATNPKFG 112
HAE I+ +G+ ++D L+VT+EPC+MCA A+ I +V FG N +FG
Sbjct: 17 HAEFMGIDQIKAMLGSRGVVDVFKDITLYVTVEPCIMCASALKQLDIGKVVFGCGNERFG 76
Query: 113 GTVSLYQILED-----KRLNHRVQVES--GILEDECAKIMQDFFKNRRKK 155
G ++ + D + N ES GIL E +++ F+ + ++
Sbjct: 77 GNGTVLSVNHDTCTLVPKNNSAAGYESIPGILRKEAIMLLRYFYVRQNER 126
emb|CAA19074.1| (AL023590) putative Cytidine and deoxycytidylate deaminase
zinc-binding protein [Schizosaccharomyces pombe]
Length = 162
Score = 52.7 bits (124), Expect = 2e-06
Identities = 37/121 (30%), Positives = 55/121 (44%), Gaps = 11/121 (9%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCV 88
P G +IV + + + R DG T HAE A+ + + L C L+ + EPC
Sbjct: 31 PFGCIIVDENDNVIMSAGNRVPDGDVTQHAETRAVGLITKTRRD--LEKCTLYTSTEPCA 88
Query: 89 MCAGAIGLARIPQVYFGATN-------PKFGGTVSLYQILED--KRLNHRVQVESGILED 139
MC+GAI + I ++ FG +N K G LY D +H ++V +ED
Sbjct: 89 MCSGAIFWSGIRRMIFGLSNENLIKLTQKSGECPPLYINSRDILGAASHPIEVVGPYIED 148
Query: 140 E 140
E
Sbjct: 149 E 149
gb|AAD36891.1|AE001819_14 (AE001819) riboflavin-specific deaminase [Thermotoga maritima]
Length = 348
Score = 52.3 bits (123), Expect = 2e-06
Identities = 46/135 (34%), Positives = 61/135 (45%), Gaps = 21/135 (15%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC- 87
P+G V+VKDG IIA F+ HAE AIE+A + + R L VT+EPC
Sbjct: 25 PVGAVVVKDGRIIAEGFH----PYFGGPHAERMAIESARKKGEDLR--GATLIVTLEPCD 78
Query: 88 -----VMCAGAIGLARIPQVYFGA--TNPKFGGTVSLYQILEDKRLNHRVQVESGILEDE 140
C I + I V G NP G V +K NH ++V G+LE+E
Sbjct: 79 HHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGV-------EKFRNHGIEVIEGVLEEE 131
Query: 141 CAKIMQDFFKNRRKK 155
K+ + F KK
Sbjct: 132 VKKLCEFFITYVTKK 146
sp|P78594|FCA1_CANAL CYTOSINE DEAMINASE (CYTOSINE AMINOHYDROLASE) >gi|1762320 (U55194)
cytosine deaminase [Candida albicans]
Length = 150
Score = 52.3 bits (123), Expect = 2e-06
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 28 VPIGVVIVK-DGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEP 86
+PIG I+ D ++ + N R A H E+ A+E A + G DC ++ T+ P
Sbjct: 25 IPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGK-TYKDCTIYTTLSP 83
Query: 87 CVMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGI-----LEDEC 141
C MC GAI L +V G N F G N ++ +E+G+ + EC
Sbjct: 84 CSMCTGAILLYGFKRVVMG-ENVNFLG-------------NEKLLIENGVEVVNLNDQEC 129
Query: 142 AKIMQDFFKNR 152
+M F K +
Sbjct: 130 IDLMAKFIKEK 140
emb|CAA08869.1| (AJ009832) riboflavin-specific deaminase [Thermotoga neapolitana]
Length = 241
Score = 50.4 bits (118), Expect = 9e-06
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC- 87
P+G V+VK+G II+ F+ L G HAE AIE+A + + L L VT+EPC
Sbjct: 25 PVGAVVVKEGRIISEGFHPLFLVG---PHAERVAIESAKRKGED--LTGTTLVVTLEPCD 79
Query: 88 -----VMCAGAIGLARIPQVYFGA--TNPKFGGTVSLYQILEDKRLNHRVQVESGILEDE 140
C I + I +V G NP G V +K H ++V G+LE+E
Sbjct: 80 HHGKTPPCTDLIIESGIKKVVIGMRDPNPVSGSGV-------EKLKKHGIEVVEGVLEEE 132
Query: 141 CAKIMQDF 148
K+ + F
Sbjct: 133 VKKLCEFF 140
gb|AAF27036.1|AC009177_26 (AC009177) unknown protein [Arabidopsis thaliana]
Length = 113
Score = 46.5 bits (108), Expect = 1e-04
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 55 THHAEVCAIEAANQAVGNWRLLDCALFVTIEPCVMCAGAIGLARIPQVYFGA 106
T HAEV AI A + + +L +C ++ + EPC MC GAI L+R+ ++ + A
Sbjct: 9 TAHAEVIAIREACKKLNEIKLSECEIYASCEPCPMCFGAIHLSRLKRLVYEA 60
sp|O66534|RIBD_AQUAE RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [INCLUDES:
DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
(RIBOFLAVIN-SPECIFIC DEAMINASE);
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
REDUCTASE)] >gi|2982867 (AE000675) riboflavin specific
deaminase [Aquifex aeolicus]
Length = 356
Score = 45.7 bits (106), Expect = 2e-04
Identities = 37/129 (28%), Positives = 61/129 (46%), Gaps = 25/129 (19%)
Query: 30 IGVVIVKDGEIIARDFNRRELDGRATHHAEVCAI-EAANQAVGNWRLLDCALFVTIEPCV 88
+G V+VK+G+I+ ++ + HAEV A+ +A +A G L+VT+EPC
Sbjct: 30 VGAVVVKEGKIVGLGYHEKA----GKPHAEVMALGQAGEKAKG------ATLYVTLEPCT 79
Query: 89 M------CAGAIGLARIPQVYFGAT--NPKFGGTVSLYQILEDKRLNHRVQVESGILEDE 140
C AI + I +V NP G +K N ++V+ G+ E+E
Sbjct: 80 HFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGV------EKLRNAGIEVDVGVCEEE 133
Query: 141 CAKIMQDFF 149
++ +DFF
Sbjct: 134 ARELNEDFF 142
sp|P25539|RIBD_ECOLI RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD [INCLUDES:
DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE
(RIBOFLAVIN-SPECIFIC DEAMINASE);
5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP
REDUCTASE)] >gi|280079|pir||S26201 hypothetical protein
2 (nusB 5' region) - Escherichia coli
>gi|581147|emb|CAA45735| (X64395) orf2, homologue to
B.subtilis ribG [Escherichia coli] >gi|1773098 (U82664)
riboflavin biosynthesis protein RibG [Escherichia coli]
>gi|1786616 (AE000148) bifunctional pyrimidine
deaminase/reductase in pathway of riboflavin synthesis
[Escherichia coli]
Length = 367
Score = 44.9 bits (104), Expect = 4e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 30 IGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCVM 89
+G VIVKDGEI+ +++R + A HA A E A A L C+ PC
Sbjct: 27 VGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCD 86
Query: 90 CAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQDFF 149
A G+AR+ NP+ G LY++ + + V G++ E ++ + F
Sbjct: 87 ALIAAGVARV-VASMQDPNPQVAGR-GLYRLQQ-----AGIDVSHGLMMSEAEQLNKGFL 139
Query: 150 KNRR 153
K R
Sbjct: 140 KRMR 143
gi|2766596 (AF002857) homologue of Bacillus subtilis ribG [Shigella flexneri]
Length = 245
Score = 44.1 bits (102), Expect = 6e-04
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 30 IGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPCVM 89
+G VIVKDGEI+ +++R + A HA A E A A L C+ PC
Sbjct: 27 VGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCD 86
Query: 90 CAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAKIMQDFF 149
A G+AR+ NP+ G LY++ + + V G++ E ++ + F
Sbjct: 87 ALIAAGVARVVAA-MQDPNPQVAGR-GLYRLQQ-----AGIDVSHGLMMSEPEQLNKGFL 139
Query: 150 KNRR 153
K R
Sbjct: 140 KRMR 143
emb|CAB45891.1| (AL080282) putative protein [Arabidopsis thaliana]
Length = 363
Score = 43.0 bits (99), Expect = 0.001
Identities = 36/125 (28%), Positives = 58/125 (45%), Gaps = 19/125 (15%)
Query: 30 IGVVIVKDGEIIARDFNRRELDGRATHHAEVCAIEAANQAVGNWRLLDCALFVTIEPC-- 87
+G VIVKDG+I+ + F+ + HAEV A+ A + N +V++EPC
Sbjct: 35 VGCVIVKDGDIVGQGFHPK----AGQPHAEVFALRDAGELAEN-----ATAYVSLEPCNH 85
Query: 88 ----VMCAGAIGLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVESGILEDECAK 143
C A+ A++ +V G +P S L+D ++ V VE E+ C K
Sbjct: 86 YGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDVTVSVE----EELCKK 141
Query: 144 IMQDF 148
+ + F
Sbjct: 142 MNEGF 146
gb|AAF09742.1|AE001878_1 (AE001878) riboflavin-specific deaminase [Deinococcus radiodurans]
Length = 357
Score = 42.6 bits (98), Expect = 0.002
Identities = 43/125 (34%), Positives = 60/125 (47%), Gaps = 33/125 (26%)
Query: 29 PIGVVIVKDGEIIARDFNRRELDGRATH------HAEVCAIEAANQAVGNWRLLDCALFV 82
P+G VIV+DGEI + E+ GR H HAEV A+ A + R +V
Sbjct: 31 PVGCVIVRDGEIAS------EIVGRGFHPKAGEPHAEVFALREAGE-----RARGATAYV 79
Query: 83 TIEPC------VMCAGAI---GLARIPQVYFGATNPKFGGTVSLYQILEDKRLNHRVQVE 133
T+EPC CA A+ G+AR+ V G NP+ G + LE R ++V
Sbjct: 80 TLEPCSHDGRTPPCADALIAAGVARV-VVAAGDPNPQVNG-----RGLEKLRA-AGIEVA 132
Query: 134 SGILE 138
+G+LE
Sbjct: 133 TGVLE 137
gb|AAF10182.1|AE001918_7 (AE001918) cytidine/deoxycytidylate
deaminase/nudix/methyltransferase domains protein
[Deinococcus radiodurans]
Length = 548
Score = 40.6 bits (93), Expect = 0.007
Identities = 33/102 (32%), Positives = 48/102 (46%), Gaps = 18/102 (17%)
Query: 29 PIGVVIVK-DGEIIARDFNRRE---------LDGRATHHAEVCAIEAANQAVGNWRLLDC 78
PIG IV G I+ R NR + G HAE+ A+ +V + R +C
Sbjct: 26 PIGACIVDAQGNIVGRGRNRLGEPRRAHAGVIGGHDLAHAEINAL----LSVPDLRRPEC 81
Query: 79 ---ALFVTIEPCVMCAGAIGLARIPQVYFGATNPKFGGTVSL 117
+ T+EPC CAGA+ ++ I V + A +P +GG L
Sbjct: 82 LSWTVLTTVEPCPQCAGAVAMSGIRGVSYAAPDP-WGGCARL 122
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.325 0.141 0.428
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35264959
Number of Sequences: 457798
Number of extensions: 1331781
Number of successful extensions: 3074
Number of sequences better than 1.0e-02: 36
Number of HSP's better than 0.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3032
Number of HSP's gapped (non-prelim): 37
length of query: 155
length of database: 140,871,481
effective HSP length: 49
effective length of query: 106
effective length of database: 118,439,379
effective search space: 12554574174
effective search space used: 12554574174
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 92 (40.2 bits)