BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= yhbH (718 kb reverse) BIO15.01
         (203 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S39340  hypothetical protein 2 - Lactococcus lactis >gi...   134  5e-31
gi|2622606  (AE000909) unknown [Methanobacterium thermoautot...    45  7e-04

 pir||S39340 hypothetical protein 2 - Lactococcus lactis
          >gi|435297|emb|CAA82307| (Z29065) unknown [Lactococcus
          lactis]
          Length = 120
          
 Score =  134 bits (335), Expect = 5e-31
 Identities = 65/72 (90%), Positives = 70/72 (96%)

Query: 1  MVSKGRLAGFIDAIIAVIMTIMLLEFELPKTGGILDFLKDNLVYLIAYLLSFIYVTTSWF 60
          MVSKGRLAGFIDAIIAV+MTIMLLEFELPKTGGI++FL+DNLVYLIAYLLSFIYVTTSWF
Sbjct: 1  MVSKGRLAGFIDAIIAVVMTIMLLEFELPKTGGIIEFLRDNLVYLIAYLLSFIYVTTSWF 60

Query: 61 NQQYMLSQAEKI 72
          NQQYML QAE +
Sbjct: 61 NQQYMLQQAETL 72



 gi|2622606 (AE000909) unknown [Methanobacterium thermoautotrophicum]
           Length = 188
           
 Score = 44.5 bits (103), Expect = 7e-04
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 1   MVSKGRLAGFIDAIIAVIMTIMLLEFELPKTGGILDFLKDNLVY-----LIAYLLSFIYV 55
           ++ K RL G +DAI A+ MTI++L  ++P TG +     D  +      L +Y LSF+ +
Sbjct: 3   VMKKKRLEGLVDAIFAIAMTILVLGIDVP-TGTMSVPAMDAYIMGLASDLYSYCLSFLLL 61

Query: 56  TTSWFNQQYMLSQAEKITRRIYHSCMIWVLSLSMLPVLSAWAGRTMD 102
              W+       + EK+        ++W++ + ++P  +   G   D
Sbjct: 62  GVFWWVNHMHFEKLEKVDTGFIWINIVWLMVVVLVPFSTKLTGNYGD 108



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.331    0.143    0.447 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53632766
Number of Sequences: 457798
Number of extensions: 2073164
Number of successful extensions: 5515
Number of sequences better than 1.0e-02: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5512
Number of HSP's gapped (non-prelim): 3
length of query: 203
length of database: 140,871,481
effective HSP length: 48
effective length of query: 155
effective length of database: 118,897,177
effective search space: 18429062435
effective search space used: 18429062435
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 94 (41.0 bits)