BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yfiE (584 kb forward) BIO15.02
(137 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA05593| (AJ002571) YklA [Bacillus subtilis] >gi|26336... 94 6e-19
emb|CAA05595| (AJ002571) YknA [Bacillus subtilis] >gi|26336... 91 3e-18
gb|AAF11408.1|AE002025_7 (AE002025) organic hydroperoxide r... 70 9e-12
gi|3098342 (AF036166) organic hydroperoxide resistance prot... 64 5e-10
emb|CAB62728.1| (AL133423) hypothetical protein SC4A7.24c [... 61 3e-09
emb|CAA70320| (Y09102) hypothetical protein [Acinetobacter ... 59 1e-08
sp|P75123|Y454_MYCPN HYPOTHETICAL PROTEIN MG454 HOMOLOG >gi... 44 6e-04
sp|P47692|Y454_MYCGE HYPOTHETICAL PROTEIN MG454 >gi|1361738... 41 0.005
emb|CAA05593| (AJ002571) YklA [Bacillus subtilis] >gi|2633668|emb|CAB13171|
(Z99110) similar to hypothetical proteins [Bacillus
subtilis]
Length = 141
Score = 93.6 bits (229), Expect = 6e-19
Identities = 51/136 (37%), Positives = 74/136 (53%), Gaps = 6/136 (4%)
Query: 4 IFSTKMINIGGRNGEVHSPDKSFNLDIVAPG----RKVEGATNPEQLFAAGYSACFNSAL 59
+F+ + +GGR G+V S D+ LD+ PG +K+E ATNPEQLFAAGY+ACF+SAL
Sbjct: 5 LFTATVSAVGGREGKVISSDRVLELDVAMPGTPRAKKLEKATNPEQLFAAGYAACFDSAL 64
Query: 60 DYIKKSKNIEGESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXXXXXX 119
+ +++ ++ E+ + VSL L LGV
Sbjct: 65 QLVARTERVKVETEVTANVSL--LKDEADQGYKLGVTLQVKGEGVSASELEALVKKAHGV 122
Query: 120 CPYSRATQGNIEVTIK 135
CPYS+AT GNI+VT++
Sbjct: 123 CPYSKATSGNIDVTLE 138
emb|CAA05595| (AJ002571) YknA [Bacillus subtilis] >gi|2633670|emb|CAB13173|
(Z99110) alternate gene name: yzzE; similar to general
stress protein [Bacillus subtilis]
Length = 136
Score = 91.3 bits (223), Expect = 3e-18
Identities = 52/134 (38%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 4 IFSTKMINIGGRNGEVHSPDKSFNLDIVAPGRKVEG--ATNPEQLFAAGYSACFNSALDY 61
+F+ K+ GGR G + S D + DIV P K EG TNPEQLFAAGY+ACF AL++
Sbjct: 3 LFTAKVTARGGRAGHITSDDGVLDFDIVMPNAKKEGQTGTNPEQLFAAGYAACFGGALEH 62
Query: 62 IKKSKNIEGESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXXXXXXCP 121
+ K +NIE +S IE VSL + +GV CP
Sbjct: 63 VAKEQNIEIDSEIEGQVSL--MKDESDGGFKIGVTLVVNTKDLDREKAQELVNAAHEFCP 120
Query: 122 YSRATQGNIEVTIK 135
YS+AT+GN++V ++
Sbjct: 121 YSKATRGNVDVKLE 134
gb|AAF11408.1|AE002025_7 (AE002025) organic hydroperoxide resistance protein [Deinococcus
radiodurans]
Length = 139
Score = 69.9 bits (168), Expect = 9e-12
Identities = 46/140 (32%), Positives = 62/140 (43%), Gaps = 9/140 (6%)
Query: 1 MKKIFSTKMINIGGRNGEVHSPDKSFNLDIVAP---GRKVEGATNPEQLFAAGYSACFNS 57
M +++ + GGR G S D NLD+ P G TNPEQLFAAGY+ACF
Sbjct: 1 MANVYTAEATATGGRAGTTRSSDDRLNLDLSVPAEMGGDGGPGTNPEQLFAAGYAACFQG 60
Query: 58 ALDYIKKSKNIE--GESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXX 115
AL + + + I+ +STI V L Q L V+
Sbjct: 61 ALGVVSRRQKIDVPADSTITARVGL----QKAGLAFALDVELEGHFPGLSREQAEGLMHA 116
Query: 116 XXXXCPYSRATQGNIEVTIK 135
CPYS AT+ N++V +K
Sbjct: 117 AHEVCPYSAATRNNVDVRLK 136
gi|3098342 (AF036166) organic hydroperoxide resistance protein [Xanthomonas
campestris]
Length = 142
Score = 64.0 bits (153), Expect = 5e-10
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 2 KKIFSTKMINIGGRNGEVHSPDKSFNLDIVAPGRKVEGA----TNPEQLFAAGYSACFNS 57
K +++ GGR G S DK+ + + P R++ GA TNPEQLFAAGY+ACF
Sbjct: 6 KVLYTAHATATGGREGRAVSSDKALDAKLSTP-RELGGAGGDGTNPEQLFAAGYAACFIG 64
Query: 58 ALDYIKKSKNIE--GESTIEVTVSLYNLSQNEIP-DVVLGVDXXXXXXXXXXXXXXXXXX 114
A+ + ++ GE +I+ +V + +IP + V+
Sbjct: 65 AMKAVAAQDKLKLPGEVSIDSSVGI-----GQIPGGFGIVVELRIAVPGMDKAELQTLVD 119
Query: 115 XXXXXCPYSRATQGNIEVTI 134
CPYS AT+GNI+VT+
Sbjct: 120 KAHQVCPYSNATRGNIDVTL 139
emb|CAB62728.1| (AL133423) hypothetical protein SC4A7.24c [Streptomyces coelicolor
A3(2)]
Length = 139
Score = 61.3 bits (146), Expect = 3e-09
Identities = 41/125 (32%), Positives = 63/125 (49%), Gaps = 9/125 (7%)
Query: 14 GRNGEVHSPDKSFNLDIVAPGRKVEG---ATNPEQLFAAGYSACFNSALDYIKKSKNIE- 69
GR+G V + D ++ +V P +++ G TNPEQLFAAGYSACF AL + + + +
Sbjct: 19 GRDGRVATDDGRLDV-VVNPPKEMGGNGAGTNPEQLFAAGYSACFQGALGVVARQEGADI 77
Query: 70 GESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXXXXXXCPYSRATQGN 129
ST+ V + +N+ ++ V+ CPYS+AT+GN
Sbjct: 78 SGSTVTAKV---GIGKNDDGFGII-VEISAEIPTVDAATARSLVEKAHQVCPYSKATRGN 133
Query: 130 IEVTI 134
I VT+
Sbjct: 134 ITVTL 138
emb|CAA70320| (Y09102) hypothetical protein [Acinetobacter sp. ADP1]
Length = 143
Score = 59.3 bits (141), Expect = 1e-08
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 8/129 (6%)
Query: 13 GGRNGEVHSPDKSFNLDIVAPGRK--VEGATNPEQLFAAGYSACFNSALDYI--KKSKNI 68
GGR+G S D ++ + P + G TNPEQLFAAGYSACF A+ ++ + NI
Sbjct: 16 GGRDGRATSSDNILDVQLTVPKEMGGMGGGTNPEQLFAAGYSACFLGAMKFVATRDKFNI 75
Query: 69 EGESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXXXXXXCPYSRATQG 128
++ +E V + + +V L V CPYS AT+
Sbjct: 76 PKDAYVEGDVGIGPIPNGFGIEVKLHV----HLPGMDTDEAKKLVDAAHIVCPYSNATRN 131
Query: 129 NIEVTIKAI 137
NI+V + +
Sbjct: 132 NIDVDFEIV 140
sp|P75123|Y454_MYCPN HYPOTHETICAL PROTEIN MG454 HOMOLOG >gi|2146485|pir||S73500
osmotically inducible protein osmC - Mycoplasma
pneumoniae (SGC3) (ATCC 29342) >gi|1673836 (AE000018)
Mycoplasma pneumoniae, osmotically inducible protein;
similar to Swiss-Prot Accession Number P23929, from E.
coli [Mycoplasma pneumoniae]
Length = 140
Score = 43.8 bits (101), Expect = 6e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 1 MKKIFSTKMINIGGRNGEVHSPDK-SFNLDIVAPGRKVEGATNPEQLFAAGYSACFNSAL 59
M I+ T GR G V + D + +L PG + NPEQLFA+ Y+ CF+ A+
Sbjct: 1 MAVIYKTTAHASAGREGVVQTVDGFTVSLAFPKPGATHQDKNNPEQLFASAYAGCFSQAV 60
Query: 60 DYIKKSKNIEGESTIEVTVSLYNLSQNEIPDVVLGVDXXXXXXXXXXXXXXXXXXXXXXX 119
+ + ++ + V VS+ Q+ + + GV+
Sbjct: 61 RVVLQQHQLQLATQPIVGVSVELHDQDGLFHIKAGVE--LAITGVDQTTAQTVITAAHAM 118
Query: 120 CPYSR 124
CP+SR
Sbjct: 119 CPFSR 123
sp|P47692|Y454_MYCGE HYPOTHETICAL PROTEIN MG454 >gi|1361738|pir||B64250 osmotically
inducible protein osmC homolog - Mycoplasma genitalium
(SGC3) >gi|1046173 (U39732) osmotically inducible
protein [Mycoplasma genitalium] >gi|3845048 (U39727)
conserved hypothetical protein [Mycoplasma genitalium]
Length = 155
Score = 40.6 bits (93), Expect = 0.005
Identities = 27/97 (27%), Positives = 43/97 (43%), Gaps = 1/97 (1%)
Query: 1 MKKIFSTKMINIGGRNGEVHSPDK-SFNLDIVAPGRKVEGATNPEQLFAAGYSACFNSAL 59
M I+ T GR G V + D L P V+ NPEQLFA+ Y++CF+ A+
Sbjct: 16 MALIYKTVAQTETGREGSVKTLDGFQTKLSFPKPDLSVQTENNPEQLFASAYASCFSQAV 75
Query: 60 DYIKKSKNIEGESTIEVTVSLYNLSQNEIPDVVLGVD 96
+ + V+V + +N + + GV+
Sbjct: 76 IVVMQQHQFSFSKKPVVSVKVELHQENGLFHIKAGVE 112
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.313 0.133 0.370
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30319594
Number of Sequences: 457798
Number of extensions: 984922
Number of successful extensions: 1529
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 140,871,481
effective HSP length: 56
effective length of query: 81
effective length of database: 115,234,793
effective search space: 9334018233
effective search space used: 9334018233
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 91 (39.9 bits)