BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yfhB (572 kb forward) BIO15.01
(310 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2196513 (U77778) putative membrane protein [Staphylococc... 129 2e-29
gi|2194196 (U61158) GdmH [Staphylococcus gallinarum] 127 1e-28
gb|AAD55373.1|AF149712_1 (AF149712) orf1 [Enterococcus faec... 111 8e-24
gi|3056882 (U33059) unknown [Actinosynnema pretiosum aurant... 99 6e-20
emb|CAA68042| (X99710) ORF [Lactococcus lactis] 92 6e-18
gb|AAD36741.1|AE001808_16 (AE001808) conserved hypothetical... 55 6e-07
emb|CAB69760.1| (AL137187) putative integral membrane prote... 49 6e-05
sp|P36565|YCBC_ECOLI HYPOTHETICAL 28.7 KD PROTEIN IN KDSB-M... 45 7e-04
gi|2196513 (U77778) putative membrane protein [Staphylococcus epidermidis]
Length = 330
Score = 129 bits (322), Expect = 2e-29
Identities = 81/231 (35%), Positives = 130/231 (56%), Gaps = 12/231 (5%)
Query: 62 LIIAYGILPLIFLLVCGYFIFNSKTMRTKEGKSATAKLSALFGLNLLIAFPALFM-LFTF 120
++ + IL L L+ + IFNSK + KEG + LS FGL+LL+ + + L F
Sbjct: 56 ILTMFIILSLSILIFLTFLIFNSKKLLEKEGSKLSNFLS--FGLSLLLLWIIVTSPLSFF 113
Query: 121 STKTIPQXXXXXXXXXXXXXXXXCFLFAAYILYSWMSQMIPLQKKIDYIIILGSGVRSEE 180
K++ LF + + S + I YII+LGSG+ ++
Sbjct: 114 INKSLAAYIFVIHIFIVSLFTYFFSLFISCFILSLFYSRRKIDMSISYIIVLGSGLIEDK 173
Query: 181 VPPLLKSRLDKGIEYY--QKNPTAKFVVSGGQGADEPVSEAFAMRKYLHSQNIPNHQILF 238
VPPLL+SR+D G ++ +K+ KF++SGGQG DE +SE+ AM+KYL +Q + ++I+
Sbjct: 174 VPPLLQSRIDIGKNFWDSKKDKHTKFLLSGGQGKDERISESQAMKKYLIAQGVNENRIIC 233
Query: 239 EDKFTTTYENMLFSKRIINEDWSDKEMPPSIIFSTNNYHVLRGSLYAQRVK 289
E+K +TYEN+ FSK +I+++ +II +NNYH+LR A+++K
Sbjct: 234 ENKSQSTYENLKFSKSLISKN-------ATIIICSNNYHILRAVFIAKKLK 277
gi|2194196 (U61158) GdmH [Staphylococcus gallinarum]
Length = 330
Score = 127 bits (316), Expect = 1e-28
Identities = 86/255 (33%), Positives = 138/255 (53%), Gaps = 24/255 (9%)
Query: 46 LLNLIYLYLPSG--DFATLIIA--YGILPLIFLLVCGYFIFNSKTMRTKEGKSATAKLSA 101
+ L++ Y S +F+ IIA + IL L L+ + IFNSK + KEG + LS
Sbjct: 36 IFGLLFFYYISVIFNFSIYIIASMFIILSLSILVFIAFLIFNSKKLLEKEGSRLSNLLS- 94
Query: 102 LFGLNLLIAF-----PALFMLFTFSTKTIPQXXXXXXXXXXXXXXXXCFLFAAYILYSWM 156
GL+LL+ + P F F K++ LF + + S
Sbjct: 95 -LGLSLLLLWIIVTSPVAF----FINKSLASYIFVVYIFIVSLLIYFLSLFISCFILSLF 149
Query: 157 SQMIPLQKKIDYIIILGSGVRSEEVPPLLKSRLDKGIEYY--QKNPTAKFVVSGGQGADE 214
+ I YI++LGSG+ ++VPPLL+SR+D G ++ +K+ KF++SGGQG DE
Sbjct: 150 YSRRKVNNNIRYILVLGSGLIEDKVPPLLQSRIDIGKNFFDSKKDADIKFLLSGGQGKDE 209
Query: 215 PVSEAFAMRKYLHSQNIPNHQILFEDKFTTTYENMLFSKRIINEDWSDKEMPPSIIFSTN 274
+SEA AM+ YL SQ + ++I+ E+K +TYEN+ FSK++I ++ +I+ +N
Sbjct: 210 RISEAQAMKNYLISQGVNENKIICENKSQSTYENLQFSKKLIKKN-------TNILICSN 262
Query: 275 NYHVLRGSLYAQRVK 289
N+H+LR A+++K
Sbjct: 263 NFHILRAVFIAKKLK 277
gb|AAD55373.1|AF149712_1 (AF149712) orf1 [Enterococcus faecalis]
Length = 176
Score = 111 bits (275), Expect = 8e-24
Identities = 59/130 (45%), Positives = 74/130 (56%)
Query: 47 LNLIYLYLPSGDFATLIIAYGILPLIFLLVCGYFIFNSKTMRTKEGKSATAKLSALFGLN 106
L+ IYL+ +GD TL IAY ++P + + + K+ KS TAKLSA GLN
Sbjct: 47 LDKIYLHFKNGDLITLAIAYLLIPAVLSAFALLYFLTHVRCKRKKAKSVTAKLSAGLGLN 106
Query: 107 LLIAFPALFMLFTFSTKTIPQXXXXXXXXXXXXXXXXCFLFAAYILYSWMSQMIPLQKKI 166
LLIA PA L + T IP FLFAAY+LYSWM QMIPL+K +
Sbjct: 107 LLIALPAFLYLLSVGTAQIPYVLFLFLLFLLLMDLLLTFLFAAYVLYSWMYQMIPLKKAV 166
Query: 167 DYIIILGSGV 176
DYII+LGSG+
Sbjct: 167 DYIIVLGSGI 176
gi|3056882 (U33059) unknown [Actinosynnema pretiosum auranticum]
Length = 336
Score = 98.7 bits (242), Expect = 6e-20
Identities = 69/243 (28%), Positives = 118/243 (48%), Gaps = 10/243 (4%)
Query: 68 ILPLIFLLVCGYFIFNSKTMRTKEGKSATAKLSALFGLNLL-IAFPALFMLFTFSTKTIP 126
I P+ +++ + I N T+ +EG LS G +L + L +L + + P
Sbjct: 61 IAPVFVVVIALFLIANGVTLLRREGFKPGNALSFGAGTAILGVVGGLLLVLLSALREGSP 120
Query: 127 QXXXXXXXXXXXXXXXXC-FLFAAYILYSWMSQMIPLQKKIDYIIILGSGVRSEEVPPLL 185
+ F F ++LYS + + + I++LG+GV V PLL
Sbjct: 121 EPWVLAAAGSLFLLAGYLGFAFTLFLLYSVLYGRVRKRTGHTAIVVLGAGVPGGRVTPLL 180
Query: 186 KSRLDKGIEYYQ----KNPTAKFVVSGGQGADEPVSEAFAMRKYLHSQNIPNHQILFEDK 241
RLD+ ++ Y+ K + V SGGQG DEP SEA M YL + IP+ +L E +
Sbjct: 181 AGRLDRALKLYRRAAAKGASPLVVASGGQGPDEPASEAEVMANYLRERGIPDEALLEERE 240
Query: 242 FTTTYENMLFSKRIINEDWSDKEMPPSIIFSTNNYHVLRGSLYAQRVKLKAQGVGGTHST 301
T+T+EN+ S ++ +++ + ++ T++YHV R ++ ++R LKA GG +
Sbjct: 241 STSTWENLRLSSALL----AERGVTGRLLVVTSSYHVPRAAILSRRAGLKADVRGGRTAW 296
Query: 302 LFL 304
F+
Sbjct: 297 YFV 299
emb|CAA68042| (X99710) ORF [Lactococcus lactis]
Length = 283
Score = 92.1 bits (225), Expect = 6e-18
Identities = 56/159 (35%), Positives = 90/159 (56%), Gaps = 12/159 (7%)
Query: 147 FAAYILYSWMSQMIPLQKKIDYIIILGSG-VRSEEVPPLLKSRLDKGIEYYQKNPTAKFV 205
F L SW+ +++ Y ++LG+G ++ E V LL +R+ ++ + N T V
Sbjct: 89 FGISFLSSWVYGRRVRKQRAAYHVVLGAGLIQGEHVGKLLGNRILAAVKAVRDNETI-LV 147
Query: 206 VSGGQGADEPVSEAFAMRKY-LHSQNIPNHQILFEDKFTTTYENMLFSKRIINEDWSDKE 264
SGGQG DE +SEA AM+KY + P + + ED+ TTYEN++FS R+I E +
Sbjct: 148 FSGGQGPDEKISEARAMQKYAVEVLGFPIERTMLEDQSRTTYENLVFSSRLIKEKF---- 203
Query: 265 MPPSIIFSTNNYHVLRGSLYAQRVKLKAQGVGGTHSTLF 303
+F T++YHV R +L+A +K+ AQG G + ++
Sbjct: 204 -----MFFTSDYHVFRAALFAATLKIDAQGGKGGKTAMY 237
gb|AAD36741.1|AE001808_16 (AE001808) conserved hypothetical protein [Thermotoga maritima]
Length = 237
Score = 55.4 bits (131), Expect = 6e-07
Identities = 45/153 (29%), Positives = 68/153 (44%), Gaps = 32/153 (20%)
Query: 145 FLFAAYI---LYSWMSQMIPLQKKIDY---------IIILGSGVR-----SEEVPPLLKS 187
+LF++Y+ L+ W PL+K +D I++LG GV + +
Sbjct: 43 YLFSSYVGEFLFLW-----PLEKNLDVPATLPNDAVIVVLGGGVERNTKAGDNLSDATLR 97
Query: 188 RLDKGIEYYQKNPTAKFVVSGGQGADEPVSEAFAMRKYLHSQNIPNHQILFEDKFTTTYE 247
RL G++ YQK V G SEA M+ YL S +P +I ED+ TYE
Sbjct: 98 RLLTGVQIYQKTKMPILVTGGSLTGLR--SEAMIMKDYLVSLGVPEEKITVEDRSRNTYE 155
Query: 248 NMLFSKRIINEDWSDKEMPPSIIFSTNNYHVLR 280
N LF++ I + II T++ H+ R
Sbjct: 156 NALFTREKIGD--------VPIILVTDSIHMRR 180
emb|CAB69760.1| (AL137187) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 228
Score = 48.8 bits (114), Expect = 6e-05
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 165 KIDYIIILGSGVRSEEVPPLLKSRLDKGIEYYQKNPTAKFVVSGGQGADEPVSEAFAMRK 224
+ + ++ G+G+ E P L RLD E Y+ A +V+G +E E AMR
Sbjct: 55 RTEVAVVFGAGLWDGEPSPYLAHRLDAAAELYRAGRIAVVLVTGDNSREE-YDEPDAMRA 113
Query: 225 YLHSQNIPNHQILFEDKFTTTYENMLFSKRIINEDWSDKEMPPSIIFSTNNYHVLRGSLY 284
YL +P+ +I+ + T+++ + +K+I D + + +H+ R
Sbjct: 114 YLVRHGVPDGRIVSDYAGFDTWDSCVRAKKIFGVD--------RAVLISQGFHIRRAVAL 165
Query: 285 AQRVKLKAQGVG 296
Q + + GVG
Sbjct: 166 CQEAGVASYGVG 177
sp|P36565|YCBC_ECOLI HYPOTHETICAL 28.7 KD PROTEIN IN KDSB-MUKF INTERGENIC REGION
>gi|1787150 (AE000194) orf, hypothetical protein
[Escherichia coli] >gi|4062491|dbj|BAA35666| (D90730)
Hypothetical protein in kdsB-mukF intergenic region .
[Escherichia coli]
Length = 259
Score = 45.3 bits (105), Expect = 7e-04
Identities = 33/120 (27%), Positives = 54/120 (44%), Gaps = 12/120 (10%)
Query: 164 KKIDYIIILGSGVR-------SEEVPPLLKSRLDKGIEYYQKNPTAKFVVSGGQGADEPV 216
+K+DYI++LG G S + RL++GI +++NP +K + +GG V
Sbjct: 77 QKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTV 136
Query: 217 SEAFAMRKYLHSQNIPNHQILFEDKFTTTYENMLFSKRIINED-----WSDKEMPPSIIF 271
S A + S +P QI+ D T E K+ I + S +P ++IF
Sbjct: 137 STAEVGARVAQSLGVPREQIITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIF 196
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.324 0.140 0.412
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69711561
Number of Sequences: 457798
Number of extensions: 2690045
Number of successful extensions: 7672
Number of sequences better than 1.0e-02: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7655
Number of HSP's gapped (non-prelim): 8
length of query: 310
length of database: 140,871,481
effective HSP length: 53
effective length of query: 257
effective length of database: 116,608,187
effective search space: 29968304059
effective search space used: 29968304059
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 96 (41.8 bits)