BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= yebA (410 kb forward) BIO07.01
(329 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58487|KIME_METJA MEVALONATE KINASE (MK) >gi|2129120|pir... 60 2e-08
gi|2648230 (AE000946) mevalonate kinase (mvk) [Archaeoglobu... 52 9e-06
emb|CAB49463.1| (AJ248284) mevalonate kinase (mvk) [Pyrococ... 49 6e-05
dbj|BAA30737| (AP000006) 335aa long hypothetical mevalonate... 48 8e-05
sp|Q50559|KIME_METTH MEVALONATE KINASE (MK) >gi|1184118 (U4... 46 5e-04
gi|2621081 (AE000796) mevalonate kinase [Methanobacterium t... 44 0.002
sp|Q58487|KIME_METJA MEVALONATE KINASE (MK) >gi|2129120|pir||F64435 mevalonate kinase
(EC 2.7.1.36) - Methanococcus jannaschii >gi|1591731
(U67551) mevalonate kinase [Methanococcus jannaschii]
Length = 312
Score = 60.1 bits (143), Expect = 2e-08
Identities = 82/330 (24%), Positives = 139/330 (41%), Gaps = 43/330 (13%)
Query: 8 MSIKVPGKLFFAGEYSVTKEGNLALITTIETNFEVRISATTGKSIFKTNVGLSDFEFSL- 66
M I+ P K+ GE++V G A+ I+ + I T I + L+D SL
Sbjct: 1 MIIETPSKVILFGEHAVVY-GYRAISMAIDLTSTIEIKETQEDEII---LNLNDLNKSLG 56
Query: 67 -SKIEFTKENPWNFA-----LTALKNTLSAADSFXXXXXXXXXXXXXXXXXXXXXDLGFG 120
+ E NP NF L A+KNTL +
Sbjct: 57 LNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISC--------- 107
Query: 121 ENKKGYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGG 180
G GSSAS+ G + AV+ F++ +L ++ ++ E+QG S+ D + I Y G
Sbjct: 108 ----GLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASITDTSTITYKG 163
Query: 181 SVFYQNHK-RVIPLEIP--------WATYVVQTGK--AAKTSEKIKIKLSDEFYQASNEL 229
+ +N+K R I E Y + K A +E KI+ DE ++ +++
Sbjct: 164 ILEIKNNKFRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAKIENKDEIFKEIDKV 223
Query: 230 VIELATAIDIQDFALFKEKLSENQLLLLENIPEGYMTKELAIALNLLNSYPEFAAKISGA 289
+ E + +DF K ++LL NI T +L +++ N + F AK++GA
Sbjct: 224 IDEALKIKNKEDFGKLMTK--NHELLKKLNI----STPKLDRIVDIGNRF-GFGAKLTGA 276
Query: 290 GFGENIILFAQNTQAIAEVQNKLSEYGINL 319
G G +I+ N + E+ +L++ + +
Sbjct: 277 GGGGCVIILV-NEEKEKELLKELNKEDVRI 305
gi|2648230 (AE000946) mevalonate kinase (mvk) [Archaeoglobus fulgidus]
Length = 284
Score = 51.5 bits (121), Expect = 9e-06
Identities = 47/176 (26%), Positives = 80/176 (44%), Gaps = 18/176 (10%)
Query: 125 GYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGGSVFY 184
G GSSA+V+ + A+N FD + E F++A + +VQG S D +GGS +
Sbjct: 90 GLGSSAAVIVATIAALNAEFDGDMDKEAIFQMAKQVEIDVQGRASGIDPFISTFGGSWLF 149
Query: 185 QNHKRVIPLEIPWATYVVQTGKAAKTSEKIKI--------KLSDEFYQASNELVIELATA 236
++V E+P+ +V+ G + K+ ++ D+ + A + + +E A
Sbjct: 150 PERRKV---EMPFKFFVINFGSRSTAEMVAKVAELRERHPEVVDKIFDAIDAISLE---A 203
Query: 237 IDIQDFALFKEKLSENQLLLLENIPEGYMTKELAIALNLLNSYPEFAAKISGAGFG 292
D+ +E ++ NQ LL G E+ + L AKI+GAG G
Sbjct: 204 SDVGSAERLEELIAINQSLLR---AIGVSNPEIDRTIAELERM-GLNAKITGAGGG 255
emb|CAB49463.1| (AJ248284) mevalonate kinase (mvk) [Pyrococcus abyssi]
Length = 335
Score = 48.8 bits (114), Expect = 6e-05
Identities = 51/193 (26%), Positives = 85/193 (43%), Gaps = 17/193 (8%)
Query: 125 GYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGGSVFY 184
G GSSA+V + AV++ D +LS E+ ++ K VQG+ S D GG ++Y
Sbjct: 115 GLGSSAAVAVATIGAVSKLLDLELSKEEIAKMGHKVELLVQGASSGIDPTVSAIGGFLYY 174
Query: 185 -QNHKRVIP-LEIPWATYVVQTGKAAKTSEKIKI--KLSDEFYQASNELVIELATAIDIQ 240
Q +P +E+P V TG + T E + + + +E + ++ + +D
Sbjct: 175 KQGEFEHLPFVELP--IVVGYTGSSGSTKELVAMVRRRYEEMPELIEPILESMGKLVDKA 232
Query: 241 DFALFKEKLSENQLLL----LENIPEGYM------TKELAIALNLLNSYPEFAAKISGAG 290
+ KL E + L L NI G + TK+L+ + + AK++GAG
Sbjct: 233 KEVII-SKLDEEEKFLKLGELMNINHGLLDALGVSTKKLSELVYAARTAGAIGAKLTGAG 291
Query: 291 FGENIILFAQNTQ 303
G + A Q
Sbjct: 292 GGGCMYALAPGKQ 304
dbj|BAA30737| (AP000006) 335aa long hypothetical mevalonate kinase [Pyrococcus
horikoshii]
Length = 335
Score = 48.4 bits (113), Expect = 8e-05
Identities = 55/194 (28%), Positives = 86/194 (43%), Gaps = 19/194 (9%)
Query: 125 GYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGGSVFY 184
G GSSA+V + AV++ +LS E+ ++ K VQG+ S D GG ++Y
Sbjct: 115 GLGSSAAVAVATIGAVSRLLGLELSKEEIAKLGHKVELLVQGASSGIDPTVSAVGGFLYY 174
Query: 185 QNHK-RVIP-LEIPWATYVVQTGKAAKTSEKIKIKLSDEFYQASNELVIELATAI-DIQD 241
+ K +P +E+P V TG T E + + + Y+ ELV + A+ + D
Sbjct: 175 KQGKFEPLPFMELP--IVVGYTGSTGSTKE--LVAMVRKRYEEMPELVEPILEAMGKLVD 230
Query: 242 FA--LFKEKLSENQLLL----LENIPEGYM------TKELAIALNLLNSYPEFAAKISGA 289
A + KL E + L L NI G + TK+L + + AK++GA
Sbjct: 231 KAKEIILSKLDEEEKLTKLGELMNINHGLLDALGVSTKKLGELVYAARTAGAIGAKLTGA 290
Query: 290 GFGENIILFAQNTQ 303
G G + A Q
Sbjct: 291 GGGGCMYALAPGRQ 304
sp|Q50559|KIME_METTH MEVALONATE KINASE (MK) >gi|1184118 (U47134) mevalonate kinase
[Methanobacterium thermoautotrophicum]
Length = 303
Score = 45.7 bits (106), Expect = 5e-04
Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 125 GYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGGSVFY 184
G GSSA++ L+ A++++ + A + +VQG+ S D A YGG V+
Sbjct: 94 GLGSSAALTVALIGALDRYHGRDHGPGETAARAHRVEVDVQGAASPLDTAISTYGGLVYL 153
Query: 185 QNHKRVIPLEIPWATYVVQTGKAAKTSEKIKIKLSDEFYQASNELVIELATAIDIQDFAL 244
+ +RV E V+ + + ++ +++ F + + + + T I + A
Sbjct: 154 DSQRRVRQFEADLGDLVIAHLDYSGETARMVAGVAERFRRFPDIMGRIMDTVESITNTA- 212
Query: 245 FKEKLSENQLLL--LENIPEGYM------TKELAIALNLLNSYPEFAAKISGAGFGENII 296
++E L N L L N+ +G + T+EL++ + + +KI+GAG G +II
Sbjct: 213 YRELLRNNTEPLGELMNLNQGLLDSMGVSTRELSMMVYEARNAGAAGSKITGAGGGGSII 272
gi|2621081 (AE000796) mevalonate kinase [Methanobacterium thermoautotrophicum]
Length = 303
Score = 43.8 bits (101), Expect = 0.002
Identities = 43/180 (23%), Positives = 83/180 (45%), Gaps = 9/180 (5%)
Query: 125 GYGSSASVVCGLVNAVNQFFDFQLSLEKRFEIAAKTHFEVQGSGSMGDIAAIMYGGSVFY 184
G GSSA++ L+ ++++ + A + +VQG+ S D A YGG V+
Sbjct: 94 GLGSSAALTVALIGPLDRYHGRDHGPGETAARAHRVEVDVQGAASPLDTAISTYGGLVYL 153
Query: 185 QNHKRVIPLEIPWATYVVQTGKAAKTSEKIKIKLSDEFYQASNELVIELATAIDIQDFAL 244
+ +RV E V+ + + ++ +++ F + + + + T I + A
Sbjct: 154 DSQRRVRQFEADLGDLVIAHLDYSGETARMVAGVAERFRRFPDIMGRIMDTVESITNTA- 212
Query: 245 FKEKLSENQLLL--LENIPEGYM------TKELAIALNLLNSYPEFAAKISGAGFGENII 296
++E L N L L N+ +G + T+EL++ + + +KI+GAG G +II
Sbjct: 213 YRELLRNNTEPLGELMNLNQGLLDSMGVSTRELSMMVYEARNAGAAGSKITGAGGGGSII 272
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.316 0.133 0.362
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73935972
Number of Sequences: 457798
Number of extensions: 2689562
Number of successful extensions: 7422
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7415
Number of HSP's gapped (non-prelim): 6
length of query: 329
length of database: 140,871,481
effective HSP length: 61
effective length of query: 268
effective length of database: 112,945,803
effective search space: 30269475204
effective search space used: 30269475204
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 96 (41.8 bits)