BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ydbC (314 kb forward) BIO15.01
         (72 letters)

           457,798 sequences; 140,871,481 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O83371|Y352_TREPA  HYPOTHETICAL PROTEIN TP0352 >gi|332264...    67  2e-11

 sp|O83371|Y352_TREPA HYPOTHETICAL PROTEIN TP0352 >gi|3322644 (AE001215) T. pallidum
          predicted coding region TP0352 [Treponema pallidum]
          Length = 85
          
 Score = 67.1 bits (161), Expect = 2e-11
 Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3  DKLKFEIIEELIVLSENAKGWRKELNRVSWNDAEPKYDIRTWSPDHEKMGKGITLSEEEF 62
          D   +E+      LS +  GW  EL  +SWN    KYDIR WSPD  KMGKG+TL+  E 
Sbjct: 11 DDFHYEVTRNWGTLSTSGNGWSLELKSISWNGRPEKYDIRAWSPDKSKMGKGVTLTRAEI 70

Query: 63 GVLLKELGN 71
           V L++L N
Sbjct: 71 -VALRDLLN 78



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.312    0.134    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21462928
Number of Sequences: 457798
Number of extensions: 763902
Number of successful extensions: 1240
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 1
length of query: 72
length of database: 140,871,481
effective HSP length: 51
effective length of query: 21
effective length of database: 117,523,783
effective search space: 2467999443
effective search space used: 2467999443
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 86 (37.9 bits)