BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ybdI (136 kb forward) BIO15.01
(181 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|1405403 (U60336) orfX [Lactococcus lactis cremoris] 80 1e-14
gb|AAF13651.1|AF188935_49 (AF188935) pXO2-46 [Bacillus anth... 45 5e-04
gb|AAD32389.1|AAD32389 (AF065404) pXO1-85 [Bacillus anthracis] 44 8e-04
dbj|BAA11325| (D78257) ORF8 [Enterococcus faecalis] 42 0.003
sp|P45613|YPH1_MYCCA HYPOTHETICAL 37.9 KD PROTEIN IN PTSH 3... 42 0.003
dbj|BAA19725| (D88802) transmembrane [Bacillus subtilis] >g... 41 0.010
gi|1405403 (U60336) orfX [Lactococcus lactis cremoris]
Length = 232
Score = 80.4 bits (195), Expect = 1e-14
Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 25 KTGVFAHFKETFRLQNLLWLLGFVIVGYILGNIAHYLYLRFVPALDTIVENEATNNFVDS 84
K G + + F+++NLL+LL I+ +++ + Y Y I + +A F
Sbjct: 70 KLGYYKNTISIFKIKNLLFLLITTIILFVIYFFS-YTYYNSHFITPGIAKTQAA--FSIQ 126
Query: 85 FLPTWFVYILMVVIAPIYEELMFREYFYRFFSHKWLAYILSILLFTLIHTRLTWSFFEYL 144
+ + +I + + API+EE FR Y FF + +AYI+S + F +HT YL
Sbjct: 127 IVFPFVQFITIAICAPIFEEASFRTTIYSFFKNDKIAYIVSCVGFAWMHTGPNPILIVYL 186
Query: 145 PMSVIVTSTFHRYKRVSDSIIVHGGYNLMVLI 176
PMS+++TS +HR + + +SI+VHG +N ++ I
Sbjct: 187 PMSIVLTSIYHRRRVLGESILVHGVFNALLPI 218
gb|AAF13651.1|AF188935_49 (AF188935) pXO2-46 [Bacillus anthracis]
Length = 221
Score = 44.9 bits (104), Expect = 5e-04
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 86 LPTWFVYILMVVIAPIYEELMFREYFYRFFSH---KWLAYILSILLFTLIHTRLTWSFFE 142
+P ++ +++PI EE++FR FS+ +A I+SI++FTL HT
Sbjct: 122 IPLILTLLVFGILSPILEEIIFRHIILNRFSNYIGTAIASIISIIIFTLFHTSQLSDIAI 181
Query: 143 YLPMSVIVTSTF 154
YLP +VI+T+ +
Sbjct: 182 YLPGAVILTAAY 193
gb|AAD32389.1|AAD32389 (AF065404) pXO1-85 [Bacillus anthracis]
Length = 227
Score = 44.1 bits (102), Expect = 8e-04
Identities = 36/147 (24%), Positives = 68/147 (45%), Gaps = 15/147 (10%)
Query: 40 NLLWLLG---FVIVGYILGNIAHYLYLRFVPALDTIVENEATNNFVDSFLPTWFVYILMV 96
+ +W+L FV + I+G++ + ++ T+N V + + I +V
Sbjct: 88 SFIWILVGIIFVFLAQIVGSMLDKSIFQLT------TQSANTSNIVAAAAISPVALISIV 141
Query: 97 VIAPIYEELMFR----EYFYRFFSHKWLAYILSILLFTLIHTRLTWSFFEYLPMSVIVTS 152
++AP+ EE +FR F W + ++S F+++H + F Y + VI+
Sbjct: 142 LLAPLVEEFVFRYAAINILMSKFKQTW-SILISSSFFSIMHFDFPF-IFGYFLIGVILAL 199
Query: 153 TFHRYKRVSDSIIVHGGYNLMVLIFHI 179
+ R R+ S +VH NL+V+I I
Sbjct: 200 VYVRTNRLLVSFVVHASMNLIVVILQI 226
dbj|BAA11325| (D78257) ORF8 [Enterococcus faecalis]
Length = 120
Score = 42.2 bits (97), Expect = 0.003
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 3/109 (2%)
Query: 71 TIVENEATNNFVDSFLPTWFVYILMVVIAPIYEELMFREYF--YRFFSHKWLAYILSILL 128
T N++T + S + V +L+ + API EE++FR Y ++ LA ++S L
Sbjct: 5 TTTANDSTLIKLFSGVSPVLVVLLLGIAAPIMEEIVFRGGIIGYLVENNALLAILISSFL 64
Query: 129 FTLIHTRLTW-SFFEYLPMSVIVTSTFHRYKRVSDSIIVHGGYNLMVLI 176
F +IH + SF Y M +I++ ++++ K + SI +H NL I
Sbjct: 65 FGIIHGPTNFISFGMYFFMGIILSVSYYKTKDLRVSISIHFLNNLFPAI 113
sp|P45613|YPH1_MYCCA HYPOTHETICAL 37.9 KD PROTEIN IN PTSH 3'REGION (ORF1)
>gi|1076128|pir||B49683 ptsH 3'-region protein 1 -
Mycoplasma capricolum (SGC3) >gi|435098 (L22432) orf1
[Mycoplasma capricolum]
Length = 336
Score = 42.2 bits (97), Expect = 0.003
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 16/161 (9%)
Query: 33 KETFRLQNLLWL---LGFVIVGYILGNIAHYLYLRFVPALDTIVENEATNNFVDSFLP-- 87
K+TF+ L + + F IV + +GN + L + + + E++ V F
Sbjct: 172 KKTFKENKKLLIPIAIAFAIVAFFVGNTLYSLIITELKL--NLGESKNQEGLVSPFKVQG 229
Query: 88 -TWFVY-----ILMVVIAPIYEELMFREYFYRFFSHKWLAYILSILLFTLIHTRL--TWS 139
T ++Y IL V IAP+ EE++ R+ + S+K L+ I+S L F ++H ++
Sbjct: 230 ITKYIYMVLFIILTVFIAPLCEEIVARQALFTGVSNKVLSIIVSSLYFGILHISSGDVYN 289
Query: 140 FFEYLPMSVIVTSTFHRYK-RVSDSIIVHGGYNLMVLIFHI 179
F Y+ + F K +S + H YNL+ ++ I
Sbjct: 290 IFPYVIGGFFFSLAFSFSKGNLSYCWLSHSFYNLISVVLII 330
dbj|BAA19725| (D88802) transmembrane [Bacillus subtilis]
>gi|2632914|emb|CAB12420| (Z99107) ydiL [Bacillus
subtilis]
Length = 244
Score = 40.6 bits (93), Expect = 0.010
Identities = 36/147 (24%), Positives = 65/147 (43%), Gaps = 15/147 (10%)
Query: 40 NLLWLL-GFVIVGY---ILGNIAHYLYLRFVPALDTIVENEATNNFVDSFLPTWFVYILM 95
++LW + GF I + I G+I +Y++ E+E T +D + I+
Sbjct: 83 SILWAIAGFFIALFSQGIAGSIEYYVF-------GIGRESENTQAILDVIQAVPLMIIVS 135
Query: 96 VVIAPIYEELMFREYFYRFFSHK---WLAYILSILLFTLIHTRLTWSFFEYLPMSVIVTS 152
++ PI EE++FR+ + K + A ++S ++F ++H L Y M
Sbjct: 136 SIVGPILEEIIFRKIIFGALYEKTNFFFAGLISSVIFGIVHADLK-HLLLYTAMGFTFAF 194
Query: 153 TFHRYKRVSDSIIVHGGYNLMVLIFHI 179
+ R KR+ I H N V+I +
Sbjct: 195 LYARTKRIWVPIFAHLMMNTFVVIMQL 221
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.335 0.149 0.475
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45199564
Number of Sequences: 457798
Number of extensions: 1699273
Number of successful extensions: 6816
Number of sequences better than 1.0e-02: 6
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6812
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 140,871,481
effective HSP length: 45
effective length of query: 136
effective length of database: 120,270,571
effective search space: 16356797656
effective search space used: 16356797656
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 93 (40.6 bits)