Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22327| (D86417) YfmM [Bacillus subtilis] >gi|2633066... 627 e-179
sp|O05519|YDIF_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 319 3e-86
gb|AAD42394.1|AF157493_2 (AF157493) hypothetical ABC transp... 259 5e-68
dbj|BAA17810| (D90909) ABC transporter [Synechocystis sp.] 254 1e-66
sp|P75790|YBIT_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 231 8e-60
emb|CAB74262.1| (AL139075) ABC transporter ATP-binding prot... 222 5e-57
emb|CAB45011.1| (AJ242839) putative ATP-binding protein [Ne... 222 5e-57
emb|CAB44947.1| (AJ242840) putative ATP-binding protein [Ne... 221 1e-56
gb|AAF11195.1|AE002007_1 (AE002007) ABC transporter, ATP-bi... 219 3e-56
emb|CAB44971.1| (AJ242841) putative ATP-binding protein [Ne... 219 3e-56
emb|CAB44978.1| (AJ242842) putative ATP-binding protein [Ne... 217 1e-55
gb|AAD07900.1| (AE000596) ABC transporter, ATP-binding prot... 216 3e-55
gi|4155369 (AE001509) putative abc transporter, ATP-binding... 216 4e-55
emb|CAB71215.1| (AL138538) putative ABC transpoter ATP-bind... 215 9e-55
gb|AAF31030.1|AC005893_1 (AC005893) ABC transporter protein... 212 6e-54
gb|AAF27952.1|AC005767_13 (AC005767) ABC transporter protei... 212 6e-54
emb|CAB13316| (Z99111) similar to ABC transporter (ATP-bind... 208 9e-53
dbj|BAA20107| (D86418) YfmR [Bacillus subtilis] >gi|2633050... 206 3e-52
emb|CAA16054| (AL021246) hypothetical protein Rv2477c [Myco... 205 6e-52
sp|P45535|YHES_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 205 8e-52
emb|CAB59456.1| (AL132644) putative ABC transporter ATP bin... 204 1e-51
gi|2688680 (AE001174) ABC transporter, ATP-binding protein ... 204 2e-51
emb|CAB43155.1| (AL049913) putative ABC transporter ATP-bin... 203 3e-51
sp|P44808|YHES_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 199 6e-50
sp|Q57242|UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UU... 197 2e-49
emb|CAA70589| (Y09439) UUP protein [Escherichia coli] 193 3e-48
sp|P43672|UUP_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN UUP... 193 3e-48
gi|3323151 (AE001254) ABC transporter, ATP-binding protein ... 188 8e-47
gb|AAA19072.1| (U10414) Contains similarity to Pfam domain:... 187 1e-46
gb|AAD18176| (AE001587) ABC Transporter Protein ATPase [Chl... 187 2e-46
sp|P25256|TLRC_STRFR TYLOSIN RESISTANCE ATP-BINDING PROTEIN... 187 2e-46
emb|CAA14531| (AJ235270) ABC TRANSPORTER ATP-BINDING PROTEI... 186 3e-46
sp|P45127|YJJK_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN HI... 185 7e-46
emb|CAA17906.1| (AL022104) probable ABC transporter [Schizo... 185 1e-45
ref|NP_011199.1|GCN20| Member of ATP-binding cassette (ABC)... 184 1e-45
gb|AAC67943.1| (AE001308) ABC Transporter Protein ATPase [C... 183 2e-45
emb|CAA18386.1| (AL022299) putative ABC transporter subunit... 183 2e-45
emb|CAB04880.1| (Z82059) similar to ABC transporters (2 dom... 183 3e-45
sp|P37797|YJJK_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN YJ... 182 6e-45
pir||S56615 hypothetical protein f579 - Escherichia coli >g... 182 6e-45
emb|CAB73146.1| (AL139076) ABC transport system ATP-binding... 179 4e-44
emb|CAB40692.1| (AL049587) putative ABC transporter [Strept... 178 7e-44
dbj|BAA18411| (D90914) ABC transporter [Synechocystis sp.] 178 7e-44
pir||S25202 srmB protein - Streptomyces ambofaciens >gi|581... 176 3e-43
pir||S67863 ATP-binding protein OleB - Streptomyces antibio... 176 3e-43
emb|CAA16001| (AL021184) hypothetical protein Rv1473 [Mycob... 175 6e-43
ref|NP_010953.1|YER036C| Yer036cp >gi|731453|sp|P40024|YEM6... 173 3e-42
emb|CAB43392.1| (AL050291) hypothetical protein [Homo sapiens] 173 4e-42
emb|CAA06290| (AJ005016) ABC transporter [Homo sapiens] 173 4e-42
gi|2522534 (AF027302) TNF-alpha stimulated ABC protein [Hom... 173 4e-42
pir||S47441 tranport protein ertX - Saccharopolyspora eryth... 166 4e-40
gb|AAF10677.1|AE001960_5 (AE001960) ABC transporter, ATP-bi... 165 7e-40
emb|CAA99835.1| (Z75537) Similarity to Yeast ATP-dependent ... 165 9e-40
gi|2661139 (U59234) ORF510; hypothetical [Synechococcus PCC... 165 9e-40
gi|153198 (M80346) carbomycin resistance protein [Streptomy... 165 9e-40
gb|AAF19673.1|AC009519_7 (AC009519) F1N19.11 [Arabidopsis t... 163 3e-39
gb|AAF10056.1|AE001907_2 (AE001907) ABC transporter, ATP-bi... 162 8e-39
sp|P39115|EXPZ_BACSU NUCLEOTIDE BINDING PROTEIN EXPZ >gi|18... 150 3e-35
emb|CAB58409.1| (AL122011) putative ABC transporter [Schizo... 149 4e-35
gi|2769708 (U82085) pristinamycin resistance protein VgaB [... 145 7e-34
gi|1408178 (U37225) elongation factor 3 related protein PFE... 144 1e-33
pir||S56147 GCN20-2 protein - Caenorhabditis elegans (fragm... 144 1e-33
dbj|BAA88415.1| (AB016613) MsrSA [Staphylococcus aureus] >g... 144 2e-33
dbj|BAA34539| (AB013298) MsrSA [Staphylococcus aureus] 144 2e-33
sp|P23212|MSRA_STAEP ERYTHROMYCIN RESISTANCE ATP-BINDING PR... 144 2e-33
emb|CAA36304| (X52085) erythromycin resistance protein (AA ... 143 3e-33
pir||S45043 expZ protein - Bacillus subtilis (fragment) >gi... 143 4e-33
pir||S52368 Ard1 protein - Streptomyces capreolus >gi|21471... 140 3e-32
pir||JC1204 vgA protein - Staphylococcus aureus >gi|153125 ... 132 5e-30
emb|CAA22049| (AL033505) ABC transporter ATP-binding protei... 131 1e-29
sp|P45167|UUP2_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UU... 129 6e-29
emb|CAB40670.1| (AL049587) putative ABC transporter [Strept... 119 5e-26
emb|CAB62765.1| (AL133424) putative ABC transporter ATP-bin... 118 1e-25
pir||S44975 lmrC protein - Streptomyces lincolnensis >gi|21... 105 8e-22
emb|CAA17599| (AL022002) hypothetical protein Rv1668c [Myco... 102 9e-21
gb|AAD13681| (AF035434) elongation factor 3 [Aspergillus fu... 99 1e-19
gi|153051 (M81802) 21kDa product of the C-terminal of MsrB ... 99 1e-19
gb|AAF31422.1| (AF213382) ATP-binding cassette protein [Mus... 96 5e-19
dbj|BAA33959| (AB012141) translation elongation factor3 [Ca... 93 4e-18
ref|NP_014384.1|YNL014W| Ynl014wp >gi|1706591|sp|P53978|EF3... 93 4e-18
dbj|BAA29953| (AP000003) 590aa long hypothetical transport ... 89 9e-17
emb|CAA05601| (AJ002571) YkoD [Bacillus subtilis] >gi|26336... 89 9e-17
emb|CAB56127.1| (AL117669) putative ABC transport ATP-bindi... 87 3e-16
ref|NP_015098.1|NEW1| New1p >gi|2132238|pir||S65245 hypothe... 87 4e-16
gb|AAC13304.2| (AF057023) translation elongation factor 3 [... 86 6e-16
sp|Q58129|Y719_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 86 6e-16
sp|P12622|CHVD_AGRTU ATP-BINDING PROTEIN CHVD >gi|77907|pir... 86 6e-16
gi|397708 (U01165) potential ATP-binding protein [Caulobact... 86 6e-16
gi|1335913 (U52850) unknown [Erysipelothrix rhusiopathiae] 85 1e-15
ref|NP_013350.1|YEF3| EF-3 (translational elongation factor... 84 2e-15
sp|P16521|EF3A_YEAST ELONGATION FACTOR 3A (EF-3A) (EF-3) >g... 84 2e-15
pir||S25363 translation elongation factor eEF-3 - yeast (Ca... 83 5e-15
emb|CAB55679.1| (AL117385) putative ABC-transporter ATP-bin... 82 1e-14
dbj|BAA33894.1| (AB018536) elongation factor 3 [Pichia past... 81 2e-14
gi|2650646 (AE001106) RNase L inhibitor [Archaeoglobus fulg... 81 2e-14
sp|P25997|EF3_CANAL ELONGATION FACTOR 3 (EF-3) >gi|2498|emb... 81 2e-14
emb|CAA22654| (AL035076) putative elongation factor 3 [Schi... 80 4e-14
dbj|BAA33897.1| (AB018539) elongation factor 3 [Saccharomyc... 80 6e-14
gi|2622826 (AE000927) RNase L inhibitor [Methanobacterium t... 80 6e-14
gi|2317850 (U44918) ATP-binding protein [Babesia bovis] 80 6e-14
gi|2317847 (U44917) ATP-binding protein [Babesia bovis] 80 6e-14
gi|2707897 (AF038153) elongation-like factor [Candida albic... 79 7e-14
sp|P29551|EF3_PNECA ELONGATION FACTOR 3 (EF-3) >gi|477560|p... 78 1e-13
dbj|BAA33895.1| (AB018537) elongation factor 3 [Yarrowia li... 78 2e-13
dbj|BAA33893.1| (AB018535) elongation factor 3 [Kluyveromyc... 78 2e-13
dbj|BAA33890.1| (AB018532) elongation factor 3 [Candida mal... 78 2e-13
emb|CAB16738.1| (Z99568) putative translation elongation fa... 78 2e-13
emb|CAA13130| (AJ231088) z25r [Vibrio cholerae] 78 2e-13
gb|AAF23272.1|AF101263_2 (AF121672) ABC transporter MreA [S... 77 3e-13
dbj|BAA33896.1| (AB018538) elongation factor 3 [Schizosacch... 77 4e-13
dbj|BAA33892.1| (AB018534) elongation factor 3 [Candida zey... 77 4e-13
dbj|BAA33891.1| (AB018533) elongation factor 3 [Candida mel... 77 4e-13
gi|2648707 (AE000976) cobalt transport ATP-binding protein ... 76 5e-13
dbj|BAA22247| (AB000617) YcdI [Bacillus subtilis] >gi|26325... 76 8e-13
dbj|BAA79499.1| (AP000059) 264aa long hypothetical ABC tran... 74 2e-12
gb|AAD36384.1|AE001785_15 (AE001785) ABC transporter, ATP-b... 74 2e-12
gi|2622836 (AE000928) cobalt transport ATP-binding protein ... 74 2e-12
gb|AAD35218.1|AE001698_7 (AE001698) zinc ABC transporter, A... 74 3e-12
gi|2502071 (AF026542) ScnT [Streptococcus pyogenes] 74 3e-12
pir||A39203 comA protein - Streptococcus pneumoniae 74 3e-12
sp|Q03727|COMA_STRPN TRANSPORT ATP-BINDING PROTEIN COMA >gi... 74 3e-12
gi|3688824 (AF084104) ABC transporter ATP-binding protein [... 73 4e-12
gi|2281663 (AF007381) gliding motility protein [Flavobacter... 73 6e-12
emb|CAB64978.1| (AJ243209) putative ABC transporter [Entero... 73 7e-12
gi|2983897 (AE000744) ABC transporter [Aquifex aeolicus] 73 7e-12
pir||A48779 translation elongation factor EF-3 homolog - Ch... 73 7e-12
gb|AAC96981.1| (U42580) Chlorella virus CVK2 translation el... 72 1e-11
dbj|BAA17111| (D90903) ABC transporter [Synechocystis sp.] 72 1e-11
emb|CAA96186| (Z71552) AdcC protein [Streptococcus pneumoniae] 72 1e-11
dbj|BAA10382| (D64002) ABC transporter [Synechocystis sp.] 72 1e-11
gi|2648557 (AE000966) ABC transporter, ATP-binding protein ... 71 2e-11
gb|AAD07317.1| (AE000544) oligopeptide ABC transporter, ATP... 71 2e-11
gb|AAF17285.1| (AF204805) NosG [Nostoc sp. GSV224] 70 4e-11
gi|1477569 (U50335) ORF3 [Mycobacterium smegmatis] 70 4e-11
sp|Q55774|Y182_SYNY3 HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 70 5e-11
sp|Q00564|LCNC_LACLA LACTOCOCCIN A TRANSPORT ATP-BINDING PR... 69 6e-11
sp|P33931|CCMA_ECOLI HEME EXPORTER PROTEIN A (CYTOCHROME C-... 69 6e-11
emb|CAA22219| (AL034355) putative ABC transporter [Streptom... 69 8e-11
gi|1777934 (U55214) TroB [Treponema pallidum] >gi|3322432 (... 69 8e-11
sp|P47425|Y179_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 69 8e-11
gb|AAD45529.1|AF162655_1 (AF162655) choline transporter [St... 69 1e-10
gb|AAD35568.1|AE001726_2 (AE001726) ABC transporter, ATP-bi... 69 1e-10
sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING P... 69 1e-10
gb|AAD50804.1| (AF165318) putative ABC transporter [Neisser... 68 1e-10
gi|2707843 (AF037753) putative ABC transporter [Neisseria m... 68 1e-10
gi|3550335 (AF085172) translation elongation factor three [... 68 2e-10
sp|P38053|SSUB_ECOLI PUTATIVE ALIPHATIC SULFONATES TRANSPOR... 68 2e-10
sp|P52648|ZNUC_ECOLI HIGH-AFFINITY ZINC UPTAKE SYSTEM ATP-B... 68 2e-10
gb|AAF22113.1|AF120457_1 (AF120457) putative ABC transporte... 68 2e-10
gi|2707847 (AF037755) putative ABC transporter [Neisseria m... 68 2e-10
gi|2707845 (AF037754) putative ABC transporter [Neisseria m... 68 2e-10
gb|AAD49728.1|AF167577_6 (AF167577) cobalt transport ATP-bi... 67 3e-10
gb|AAD35314.1|AE001707_1 (AE001707) ABC transporter, ATP-bi... 67 3e-10
pir||B49454 transporter ATP-binding cassette homolog SurB -... 67 3e-10
gi|2826445 (U67606) methyl coenzyme M reductase system, com... 67 4e-10
pir||D64507 methyl coenzyme M reductase system, component A... 67 4e-10
emb|CAB49295.1| (AJ248284) ABC transporter, ATP-binding pro... 66 6e-10
gi|3850209 (AF043280) ABC transporter [Streptococcus saliva... 66 6e-10
gi|3779192 (U78968) ATPase protein DppE [Streptococcus pyog... 66 6e-10
gi|3335345 (AC004512) Contains similarity to ABC transporte... 66 6e-10
gi|2707857 (AF037760) putative ABC transporter [Neisseria m... 66 6e-10
sp|P23886|CYDC_ECOLI TRANSPORT ATP-BINDING PROTEIN CYDC >gi... 66 6e-10
gi|2707855 (AF037759) putative ABC transporter [Neisseria m... 66 7e-10
emb|CAA91229| (Z56283) orf1 [Lactobacillus helveticus] 66 7e-10
gi|4154751 (AE001461) ABC transporter, ATP-binding protein ... 66 9e-10
emb|CAA07722| (AJ007906) FhuC [Rhizobium leguminosarum] 66 9e-10
dbj|BAA19286| (AB001488) PROBABLE TRANSPORT ATP BINDING PRO... 66 9e-10
gb|AAF11948.1|AE002071_2 (AE002071) ABC transporter, ATP-bi... 65 1e-09
gi|1698421 (U40139) ComA [Streptococcus gordonii] 65 1e-09
gi|2773332 (AF040718) ABC transporter CydC [Shigella flexneri] 65 2e-09
emb|CAB15283| (Z99120) similar to iron(III) dicitrate trans... 65 2e-09
sp|P45275|YG18_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 65 2e-09
dbj|BAA81540.1| (AP000064) 242aa long hypothetical high-aff... 64 2e-09
gi|2983231 (AE000698) ABC transporter [Aquifex aeolicus] 64 2e-09
dbj|BAA16749| (D90900) ABC transporter [Synechocystis sp.] 64 2e-09
pir||B36931 hypothetical protein (sfp0 5' region) - Bacillu... 64 2e-09
gb|AAF00956.1|AF183408_4 (AF183408) McyH [Microcystis aerug... 64 3e-09
gi|1573662 (U32749) ATP-binding transport protein (cydD) [H... 64 3e-09
sp|P04983|RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN R... 64 3e-09
gi|290599 (L10328) high affinity ribose transport protein [... 64 3e-09
emb|CAB73434.1| (AL139077) putative ABC transporter ATP bin... 64 4e-09
gb|AAC31907.1| (AF075709) ABC transporter ATP-binding subun... 64 4e-09
emb|CAB11002| (Z98271) cell division atp-binding protein [M... 64 4e-09
dbj|BAA30934.1| (AP000007) 284aa long hypothetical cobalt t... 63 5e-09
gi|1943947 (U90126) ABC transporter [Bos taurus] 63 5e-09
dbj|BAA17050| (D90902) ABC transporter [Synechocystis sp.] 63 5e-09
gi|2688485 (AE001158) ABC transporter, ATP-binding protein ... 63 6e-09
dbj|BAA09005| (D50453) homologue of hypothetical protein in... 62 8e-09
dbj|BAA11573| (D82575) elongation factor 3 [Schizosaccharom... 62 8e-09
sp|P48334|YCXD_CYAPA PROBABLE ABC TRANSPORTER ATP-BINDING P... 62 8e-09
sp|P44735|RBSA_HAEIN RIBOSE TRANSPORT ATP-BINDING PROTEIN R... 62 8e-09
gi|2293296 (AF008220) putative transporter [Bacillus subtil... 62 1e-08
sp|P39456|YCKI_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER AT... 62 1e-08
sp|P54954|YXEO_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER AT... 62 1e-08
pir||I40452 ABC-type transport system probable ATP binding ... 62 1e-08
sp|Q01937|LACK_AGRRD LACTOSE TRANSPORT ATP-BINDING PROTEIN ... 62 1e-08
gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ... 61 2e-08
gb|AAD01806| (AF026468) ABC transporter MutT [Streptococcus... 61 2e-08
gi|2621685 (AE000842) ABC transporter [Methanobacterium the... 61 2e-08
dbj|BAA18768| (D90917) haemolysin secretion ATP-binding pro... 61 2e-08
gi|2621192 (AE000803) methyl coenzyme M reductase system, c... 61 2e-08
gi|1574050 (U32782) thiamin ABC transporter, ATP-binding pr... 61 2e-08
sp|P44986|YABJ_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 61 2e-08
gb|AAF31421.1| (AF213381) ATP-binding cassette protein [Mus... 61 3e-08
gb|AAD54843.1|AF137379_66 (AF137379) probable transport pro... 61 3e-08
gb|AAB71758.2| (U83661) multidrug resistance protein 5 [Hom... 61 3e-08
dbj|BAA76608.1| (AB019002) MRP5 [Homo sapiens] 61 3e-08
ref|NP_005679.1|| ATP-binding cassette, sub-family C (CFTR/... 61 3e-08
gi|2650419 (AE001090) branched-chain amino acid ABC transpo... 61 3e-08
dbj|BAA22887| (AB005659) a short type of multidrug resistan... 61 3e-08
ref|NP_031404.1|| ATP-binding cassette, sub-family A (ABC1)... 61 3e-08
sp|P37624|YHIH_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 61 3e-08
pir||S47705 hypothetical protein f648 - Escherichia coli >g... 61 3e-08
dbj|BAA83964.1| (AB024564) YHCG [Bacillus halodurans] 60 4e-08
emb|CAB52067.1| (AL109732) putative branched chain amino ac... 60 4e-08
gb|AAD37716.1|AF146074_1 (AF146074) ABC protein [Homo sapiens] 60 4e-08
emb|CAB14684| (Z99117) glutamine ABC transporter (ATP-bindi... 60 4e-08
sp|P26361|CFTR_MOUSE CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTA... 60 4e-08
gi|2649574 (AE001033) ABC transporter, ATP-binding protein ... 60 5e-08
ref|NP_005041.1|| ATP-binding cassette, sub-family D (ALD),... 60 5e-08
gi|2293417 (AF007800) MtlK [Pseudomonas fluorescens] 60 5e-08
gb|AAD36138.1|AE001766_4 (AE001766) oligopeptide ABC transp... 59 7e-08
gb|AAD36131.1|AE001765_10 (AE001765) ABC transporter, ATP-b... 59 7e-08
dbj|BAA76609.1| (AB019003) MRP5 [Mus musculus] 59 7e-08
gb|AAF09790.1|AE001882_8 (AE001882) ABC transporter, ATP-bi... 59 9e-08
emb|CAA21355| (AL031866) ORF32, len:, 236 aa, hypothetical ... 59 9e-08
gb|AAC68248.1| (AE001336) ABC Transporter ATPase [Chlamydia... 59 9e-08
gi|1644364 (U72493) ATP binding protein [Chlamydia trachoma... 59 9e-08
emb|CAB73271.1| (AL139077) branched-chain amino-acid ABC tr... 58 2e-07
gb|AAF30300.1|AF162137_4 (AF229844) cystic fibrosis transme... 58 2e-07
dbj|BAA88897.1| (AB020209) multidrug resistance protein (MR... 58 2e-07
gb|AAF09986.1|AE001901_1 (AE001901) ABC transporter, ATP-bi... 58 2e-07
gb|AAD37835.1|AF104349_1 (AF104349) ABC transporter ZurA [L... 58 2e-07
gi|2984331 (AE000774) ABC transporter [Aquifex aeolicus] 58 2e-07
gi|2621547 (AE000832) sulfate transport system ATP-binding ... 58 2e-07
pir||A40303 cystic fibrosis transmembrane conductance regul... 58 2e-07
gb|AAD36105.1|AE001764_8 (AE001764) ABC transporter, ATP-bi... 58 2e-07
dbj|BAA75300.1| (AB017508) ybxA homologue (identity of 50% ... 58 2e-07
gb|AAD18862| (AE001653) ABC Transporter ATPase [Chlamydia p... 58 2e-07
emb|CAA14960| (AJ235272) ABC TRANSPORTER ATP-BINDING PROTEI... 58 2e-07
emb|CAA75729| (Y15635) ABCR [Homo sapiens] 58 2e-07
ref|NP_000341.1|| ATP binding cassette transporter >gi|1888... 58 2e-07
sp|P41076|GLTL_ECOLI GLUTAMATE/ASPARTATE TRANSPORT ATP-BIND... 58 2e-07
sp|P32721|ALSA_ECOLI D-ALLOSE TRANSPORT ATP-BINDING PROTEIN... 58 2e-07
gi|396422 (U00006) matches PS00017: ATP/GTP-binding site mo... 58 2e-07
gi|1669378 (AC000061) coded for by human cDNA M96936 (NID:g... 57 3e-07
gi|1669377 (AC000061) cystic fibrosis transmembrane conduct... 57 3e-07
pir||B64458 high-affinity branched-chain amino acid transpo... 57 3e-07
pir||A64455 methyl coenzyme M reductase system, component A... 57 3e-07
gi|180332 (M28668) cystic fibrosis transmembrane conductanc... 57 3e-07
ref|NP_000483.1|| cystic fibrosis transmembrane conductance... 57 3e-07
pir||S42925 probable transport protein - Staphylococcus aur... 57 3e-07
emb|CAB72215.1| (AL138851) cell division ATP-binding protei... 57 4e-07
emb|CAB61549.1| (AL133171) putative ABC transporter [Strept... 57 4e-07
gb|AAD35847.1|AE001746_8 (AE001746) ABC transporter, ATP-bi... 57 4e-07
gi|2649778 (AE001047) branched-chain amino acid ABC transpo... 57 4e-07
bbs|179002 (S82688) cystic fibrosis transmembrane conductan... 57 5e-07
sp|Q58429|YA23_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 57 5e-07
emb|CAB73781.1| (AL139078) enterochelin uptake ATP-binding ... 56 6e-07
gb|AAF11669.1|AE002047_2 (AE002047) branched-chain amino ac... 56 6e-07
gb|AAD01807| (AF026468) ABC transporter MutF [Streptococcus... 56 6e-07
dbj|BAA24809| (D85752) bacE [Enterococcus faecalis] 56 6e-07
sp|P74548|CYSA_SYNY3 SULFATE TRANSPORT ATP-BINDING PROTEIN ... 56 6e-07
pir||G64435 cobalt transport ATP-binding protein O homolog ... 56 6e-07
emb|CAB60755.1| (Y18641) ATP-binding protein [Staphylococcu... 56 8e-07
gb|AAD16030| (AF082183) ABC transporter MutF [Streptococcus... 56 8e-07
emb|CAA63958| (X94292) cbiO [Methanobacterium thermoautotro... 56 8e-07
sp|P48255|ABCX_CYAPA PROBABLE ATP-DEPENDENT TRANSPORTER YCF... 56 8e-07
sp|Q55791|Y075_SYNY3 PROBABLE ATP-DEPENDENT TRANSPORTER SLR... 56 8e-07
sp|P45092|ARTP_HAEIN ARGININE TRANSPORT ATP-BINDING PROTEIN... 56 8e-07
emb|CAB71261.1| (AL138598) putative ABC transport protein ... 55 1e-06
gb|AAD35875.1|AE001747_18 (AE001747) ABC transporter, ATP-b... 55 1e-06
gi|2293251 (AF008220) putative amino acid transporter [Baci... 55 1e-06
dbj|BAA09014| (D50453) homologue of iron dicitrate transpor... 55 1e-06
sp|P45046|XYLG_HAEIN D-XYLOSE TRANSPORT ATP-BINDING PROTEIN... 55 1e-06
gb|AAF13757.1|AF117351_14 (AF117351) hypothetical ABC trans... 55 1e-06
emb|CAB49582.1| (AJ248285) daunorubicin resistance ATP-bind... 55 1e-06
sp|P23199|MGLA_ECOLI GALACTOSIDE TRANSPORT ATP-BINDING PROT... 55 1e-06
gb|AAA58003.1| (U18997) ORF_o241 [Escherichia coli] >gi|178... 55 1e-06
sp|P19844|NOSF_PSEST COPPER TRANSPORT ATP-BINDING PROTEIN N... 55 1e-06
gb|AAD35676.1|AE001734_3 (AE001734) amino acid ABC transpor... 55 2e-06
gb|AAD31787.1|AF126201_5 (AF126201) AtsC [Pseudomonas putida] 55 2e-06
emb|CAA72921| (Y12234) AS-48D protein [Enterococcus faecalis] 55 2e-06
sp|P45022|GLTL_HAEIN GLUTAMATE/ASPARTATE TRANSPORT ATP-BIND... 55 2e-06
sp|Q00830|ABCX_ODOSI PROBABLE ATP-DEPENDENT TRANSPORTER YCF... 55 2e-06
pir||S42931 potential ABC transporter - Staphylococcus homi... 55 2e-06
pir||S42927 probable transport protein - Staphylococcus epi... 55 2e-06
emb|CAB73006.1| (AL139076) ABC transport system ATP-binding... 54 2e-06
emb|CAB75107.1| (AL139075) amino-acid ABC transporter ATP-b... 54 3e-06
gi|1513298 (U66526) AbcA [Dictyostelium discoideum] 54 3e-06
sp|P33594|NIKE_ECOLI NICKEL TRANSPORT ATP-BINDING PROTEIN N... 54 3e-06
pir||B37277 50K membrane-associated protein mglA - Escheric... 54 3e-06
gb|AAD36474.1|AE001793_4 (AE001793) antibiotic ABC transpor... 53 4e-06
sp|P45073|YHBG_HAEIN PROBABLE ABC TRANSPORTER ATP-BINDING P... 53 4e-06
pir||A48362 hypothetical protein 280 (rpoN 5' region) - Alc... 53 4e-06
emb|CAB49694.1| (AJ248285) hypothetical protein [Pyrococcus... 53 5e-06
sp|P75776|YBHF_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 53 5e-06
gi|2649412 (AE001023) ribose ABC transporter, ATP-binding p... 53 5e-06
gi|1787012 (AE000181) putative ATP-binding component of a t... 53 5e-06
emb|CAB07463| (Z92953) ATP-binding transport protein [Bacil... 53 7e-06
gi|2649976 (AE001060) nitrate ABC transporter, ATP-binding ... 52 9e-06
sp|P23924|MGLA_SALTY GALACTOSIDE TRANSPORT ATP-BINDING PROT... 52 9e-06
sp|P45031|YRBF_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 52 9e-06
gi|2984365 (AE000776) ABC transporter [Aquifex aeolicus] 52 1e-05
gi|2618833 (AF017113) cell division ATP-binding protein [Ba... 52 1e-05
gb|AAD35209.1|AE001697_9 (AE001697) sugar ABC transporter, ... 52 2e-05
gi|2983088 (AE000689) ABC transporter [Aquifex aeolicus] 52 2e-05
gi|2649585 (AE001034) ABC transporter, ATP-binding protein ... 52 2e-05
gi|2649451 (AE001025) ABC transporter, ATP-binding protein ... 52 2e-05
gi|2622479 (AE000900) ABC transporter (ATP-binding protein)... 52 2e-05
sp|P36947|RBSA_BACSU RIBOSE TRANSPORT ATP-BINDING PROTEIN R... 51 2e-05
sp|P31220|YHBG_ECOLI PROBABLE ABC TRANSPORTER ATP-BINDING P... 51 2e-05
emb|CAB59828.1| (AJ012388) hypothetical protein [Lactococcu... 51 3e-05
emb|CAB39691.1| (AL049485) putative ABC transporter ATP-bin... 51 3e-05
gi|2650612 (AE001104) polysaccharide ABC transporter, ATP-b... 51 3e-05
sp|P56344|CYSA_CHLVU PROBABLE SULFATE TRANSPORT ATP-BINDING... 51 3e-05
emb|CAA90624| (Z50747) N-terminal part of a protein of unkn... 51 3e-05
gi|466616 (U00039) nikE [Escherichia coli] >gi|1789891 (AE0... 51 3e-05
emb|CAB08064| (Z94043) hypothetical protein [Bacillus subti... 50 4e-05
gi|2648659 (AE000972) daunorubicin resistance ATP-binding p... 50 5e-05
gi|2317737 (AF013987) putative ABC transporter ATP-binding ... 50 5e-05
sp|P55339|ECSA_BACSU ABC-TYPE TRANSPORTER ATP-BINDING PROTE... 50 5e-05
emb|CAB72946.1| (AL139076) ABC-transporter ATP-binding prot... 50 6e-05
emb|CAA11111| (AJ223088) hypothetical protein [Pseudomonas ... 50 6e-05
gb|AAF33771.1|AF219259_4 (AF219259) YhbG [Haemophilus ducreyi] 49 8e-05
gb|AAD35172.1|AE001694_8 (AE001694) iron(III) ABC transport... 49 8e-05
dbj|BAA75396.1| (AB013378) YhaQ [Bacillus halodurans] 49 8e-05
gi|4155205 (AE001497) putative abc transporter, ATP-binding... 48 1e-04
gb|AAD07765.1| (AE000584) ABC transporter, ATP-binding prot... 48 1e-04
gi|2281463 (AF000366) oligopeptide permease homolog F [Borr... 48 1e-04
sp|Q56993|HMUV_YERPE HEMIN TRANSPORT SYSTEM ATP-BINDING PRO... 48 1e-04
gb|AAD35629.1|AE001729_9 (AE001729) ABC transporter, ATP-bi... 48 2e-04
dbj|BAA30472| (AP000006) 308aa long hypothetical ATP-bindin... 48 2e-04
emb|CAB66211.1| (AL136502) putative ABC transporter, ATP-bi... 47 4e-04
gi|3387977 (AF070598) ABC transporter [Homo sapiens] 47 4e-04
emb|CAA05793| (AJ003004) ABC transporter [Rattus norvegicus] 47 4e-04
emb|CAB11989| (Z99105) similar to ABC transporter (binding ... 47 4e-04
dbj|BAA21552.1| (AB005752) MDR(Multidrug Resistance)-like g... 47 4e-04
emb|CAB39282.1| (AJ133704) NatA protein [Anabaena sp.] 46 5e-04
gi|3323192 (AE001257) ABC transporter, ATP-binding protein ... 46 5e-04
emb|CAA16460| (AL021529) ABC-transporter ATP-binding protei... 46 5e-04
emb|CAB73569.1| (AL139079) putative peptide ABC-transport s... 46 7e-04
gi|4204313 (AC003027) lcl|prt_seq No definition line found ... 46 7e-04
gi|2649182 (AE001008) branched-chain amino acid ABC transpo... 46 7e-04
sp|Q57538|Y664_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 46 7e-04
emb|CAB49911.1| (AJ248286) DAUNORUBICIN RESISTANCE ATP-BIND... 45 0.002
dbj|BAA78952.1| (AP000058) 381aa long hypothetical multiple... 45 0.002
gi|2650420 (AE001090) branched-chain amino acid ABC transpo... 45 0.002
sp|O31151|UVRA_ZYMMO EXCINUCLEASE ABC SUBUNIT A >gi|3820590... 45 0.002
gi|2088709 (AF003138) strong similarity to the ATP-binding ... 45 0.002
sp|Q57554|Y089_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDI... 45 0.002
emb|CAA87396.1| (Z47200) YfuC protein [Yersinia enterocolit... 44 0.003
gi|2650733 (AE001113) ABC transporter, ATP-binding protein ... 44 0.003
gi|1196907 (L76359) daunorubicin resistance protein [Strept... 43 0.005
dbj|BAA22327| (D86417) YfmM [Bacillus subtilis] >gi|2633066|emb|CAB12571|
(Z99108) similar to ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 518
Score = 627 bits (1599), Expect = e-179
Identities = 303/518 (58%), Positives = 388/518 (74%), Gaps = 1/518 (0%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MSIL+VK+LSHGFGDRAIF +VSFRLLKGEH+G +GANGEGKSTFMNIITG L PDEGKV
Sbjct: 1 MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKV 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
WSK RVGY+DQH VL KGK+ R+ L +AF YLF +E ++N+ Y KM E DE+ L
Sbjct: 61 EWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEKLL 120
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXX 179
E VG +Q+ L N+DFY+ID+KVEE ARGLGL+ + L++DV +LSGGQRTK
Sbjct: 121 EEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLLEK 180
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TNYLDE+HI WLK YL+ YENAFILISHD+PF++ V+N+IYHV +TRY
Sbjct: 181 PEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELTRY 240
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKME 299
Y +F V+E KK QLE+ + Q E A+LKDF+AR KA V+T A +R+KKL KM+
Sbjct: 241 VGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDKMD 300
Query: 300 IVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNG 359
++E +EKPKP F FK +R +L+FE KDLVIGY+ PLS +NL++E GQKIA G+NG
Sbjct: 301 MIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGYDSPLSRPLNLRMERGQKIALYGANG 360
Query: 360 IGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAEL 419
IGK+TLLKSL+G I L+G VE+G Y+EQE+K + T ++++W E+PS+ Q E+
Sbjct: 361 IGKTTLLKSLLGEIQPLEGSVERGEHIYTGYFEQEVKETNNNTCIEEVWSEFPSYTQYEI 420
Query: 420 RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK 479
R A A+ GLT K IESRV VLSGGE+AK+R KL+N+E+N+L+LDEPTNHLD DAKEELK
Sbjct: 421 RAAPAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHLDADAKEELK 480
Query: 480 RALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTRIL 517
RAL EY G++L++SHEP+FY + ++ NCE WTT++L
Sbjct: 481 RALKEYKGSILLISHEPDFYMDIATETWNCESWTTKVL 518
sp|O05519|YDIF_BACSU HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDIF
>gi|1945111|dbj|BAA19719| (D88802) H. influenzae
hypothetical ABC transporter; P44808 (974) [Bacillus
subtilis] >gi|2632908|emb|CAB12414| (Z99107) similar to
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 642
Score = 319 bits (809), Expect = 3e-86
Identities = 182/515 (35%), Positives = 281/515 (54%), Gaps = 11/515 (2%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M IL LS FG I ++ + + I VG NG GKST + II G L ++G++
Sbjct: 1 MMILQANQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
I K +GY+ QH L T +E L F +L +E ++ KMA E+ + +
Sbjct: 61 IKPKDITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAADPGELESIM 120
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDK-DVAELSGGQRTKXXXXXXXXXX 179
+ LQ+E + Y +A V GLG + D V LSGGQ+T+
Sbjct: 121 KTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQ 180
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD + + WL++YL+ Y A +++SHD F+D+VVN +Y V +Y
Sbjct: 181 PDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESKKY 240
Query: 240 SMGYAEFERVFEEKKAQLES---LHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLA 296
Y+ + ++K AQ E ++ Q E AKL+DF+ R A +T+ +A++R K+L
Sbjct: 241 HGNYSAY---LDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLE 297
Query: 297 KMEIV-ETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE--PLSSEINLKVESGQKIA 353
+M+++ + + ++ +F F +++ V +DL I Y PL +E++ + G+ A
Sbjct: 298 RMDVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGESAA 357
Query: 354 FIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE-IKNPSQKTVLDDLWDEYP 412
+G NGIGKSTLLK+L+ + G + G+ + YY+QE + S K VLD+LWDEYP
Sbjct: 358 LVGPNGIGKSTLLKTLIDTLKPDQGTISYGSNVSVGYYDQEQAELTSSKRVLDELWDEYP 417
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
+ E+R L + + V+ LSGGE+A+L AKLM ++N LILDEPTNHLD+
Sbjct: 418 GLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTNHLDL 477
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
D+KE L+ ALI+YPGT+L VSH+ F + + V+
Sbjct: 478 DSKEVLENALIDYPGTLLFVSHDRYFINRIATRVL 512
gb|AAD42394.1|AF157493_2 (AF157493) hypothetical ABC transporter ATP-binding protein
[Zymomonas mobilis]
Length = 621
Score = 259 bits (654), Expect = 5e-68
Identities = 157/505 (31%), Positives = 260/505 (51%), Gaps = 23/505 (4%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L+ ++ G + I + + L G H+G +G NG GKST M ++ G L D G++
Sbjct: 1 MLSFSAITVRLGGQLILDQATASLPPGSHVGLIGRNGAGKSTLMKVVAGLLEADSGELSM 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ R+GY+ Q A G LA ++ ++ E SE E + LE
Sbjct: 61 PRGTRIGYIAQEAPEGSATPYETVLAA------------DEERSRLMEASETESD--LEK 106
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXXXX 181
+ E+ E L+ D Y GLG + + ++ SGG R +
Sbjct: 107 LAEIHERLNTIDAYTAPQGAARILAGLGFDETMQHQPLSAFSGGWRMRVALGALLFSAPD 166
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
+N+LD E +LWL+N+L+ Y +LISH+ F+++V + I H+ +T Y
Sbjct: 167 LLLLDEPSNHLDLEAVLWLENFLRGYRGTLLLISHERDFLNKVADHILHLQQGKLTLYPG 226
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
GY FER E+ +QLES N Q+AE+ KL+ F+ R + ++ QA++R K L +ME +
Sbjct: 227 GYDAFERQRAERLSQLESARNRQLAEREKLQSFVNRWRTKAHSARQAQSRMKALERMEPI 286
Query: 302 ETISEKPKPHFDFKF---SRKPSRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGS 357
E P F F + KP + + +GY++ P+ +++NL+++ +IAFIG
Sbjct: 287 AAAVEDPSLSFSFPSPDDNLKPPLITLD--QAAVGYDDKPILTKLNLRIDPDDRIAFIGR 344
Query: 358 NGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ-EIKN-PSQKTVLDDLWDEYPSWN 415
NG GK+TL K ++G +P++DG++ + + Y+ Q +++ + LD + P +
Sbjct: 345 NGNGKTTLAKLIVGQLPTVDGQMVTSSKIKVGYFTQYQVEELDVDDSPLDHMTRLMPGAS 404
Query: 416 QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK 475
+R L R G + + +V +SGGE+A+L A + ++LILDEPTNHLDVD +
Sbjct: 405 TTAVRSQLGRFGFSGDKATQKVGSMSGGERARLALALITRDAPHLLILDEPTNHLDVDVR 464
Query: 476 EELKRALIEYPGTVLMVSHEPEFYE 500
+ L AL +Y G V++VSH+ E
Sbjct: 465 QALIEALADYQGAVIIVSHDRHMLE 489
Score = 72.2 bits (174), Expect = 1e-11
Identities = 51/192 (26%), Positives = 87/192 (44%), Gaps = 29/192 (15%)
Query: 349 GQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQ-------- 400
G + IG NG GKSTL+K + GL+ + GE+ I Y QE S
Sbjct: 27 GSHVGLIGRNGAGKSTLMKVVAGLLEADSGELSMPRGTRIGYIAQEAPEGSATPYETVLA 86
Query: 401 --------------KTVLDDLWDEYPSWNQAELRGA-------LARVGLTAKQIESRVYV 439
++ L+ L + + N + A LA +G +
Sbjct: 87 ADEERSRLMEASETESDLEKLAEIHERLNTIDAYTAPQGAARILAGLGFDETMQHQPLSA 146
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFY 499
SGG + ++ L+ + ++L+LDEP+NHLD++A L+ L Y GT+L++SHE +F
Sbjct: 147 FSGGWRMRVALGALLFSAPDLLLLDEPSNHLDLEAVLWLENFLRGYRGTLLLISHERDFL 206
Query: 500 EGLVSDVINCEE 511
+ +++ ++
Sbjct: 207 NKVADHILHLQQ 218
dbj|BAA17810| (D90909) ABC transporter [Synechocystis sp.]
Length = 574
Score = 254 bits (643), Expect = 1e-66
Identities = 158/515 (30%), Positives = 265/515 (50%), Gaps = 6/515 (1%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L ++++ + + +DV++ + E +G VG NG GKST + II G + G++I
Sbjct: 1 MLRLEHIRKIYPTGEVLKDVNWEVKPEERVGLVGVNGAGKSTQLKIIMGEVEATAGEIIR 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
++ ++ Q + +T RE + F ++ ++ + +M D + +
Sbjct: 61 PAALKIAHLTQEFDVTPSRTLREEMWTVFTEANQVQDAMHHVHQEMEVADPDTLENLIHK 120
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLL-DKDVAELSGGQRTKXXXXXXXXXXXX 181
+ +LQ + + D Y +++++E +G P D+ V+ SGG + +
Sbjct: 121 LDKLQRQFEGLDGYRLESQIERILPEIGFEPEDGDRLVSSFSGGWQMRISLGKILLQEPD 180
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD E I WL+ YLK + ++ISHD F+D + I T Y
Sbjct: 181 LLLLDEPTNHLDLETIEWLETYLKGLKTPMVIISHDREFLDRLCTKIVETERGISTTYLG 240
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y+ + EE L S + Q AK + F+ + +A+ S QAK+REK+L K+E V
Sbjct: 241 NYSSYLVQKEEGNLALASAYEHQQKALAKQQAFVDKFRASATRSTQAKSREKQLEKIERV 300
Query: 302 ET-ISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSS-EINLKVESGQKIAFIGSNG 359
E + F F + + R V +D+ +N+ L NL++E G +IAF+G NG
Sbjct: 301 EAPVGGVRTLKFHFPPAPRSGRQVALIEDISHSFNDKLLFLGANLEIERGDRIAFLGPNG 360
Query: 360 IGKSTLLKSLMGLIPSLDGEVEKGNFQDI-AYYEQEIKNPS--QKTVLDDLWDEYPSWNQ 416
GKSTLL+ +MG+ +G+++ G + Y+EQ +KTV++ + DE P W
Sbjct: 361 CGKSTLLRMIMGMELPDEGQIKLGEHNILPGYFEQNQAEALDLEKTVMETIHDEVPDWKN 420
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+R L R + + + +V LSGGE+A+L AK++ T +N LILDEPTNHLD+ AKE
Sbjct: 421 EEVRTLLGRFLFSGETVFKKVAALSGGEKARLALAKMLLTPANFLILDEPTNHLDIPAKE 480
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
L+ AL EY GTV++VSH+ F + + ++ +
Sbjct: 481 MLEEALQEYEGTVVLVSHDRYFISRVANKIVEVRD 515
Score = 83.9 bits (204), Expect = 3e-15
Identities = 76/295 (25%), Positives = 125/295 (41%), Gaps = 52/295 (17%)
Query: 6 VKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKK 65
++++SH F D+ +F + + +G+ I F+G NG GKST + +I G +PDEG++ +
Sbjct: 327 IEDISHSFNDKLLFLGANLEIERGDRIAFLGPNGCGKSTLLRMIMGMELPDEGQIKLGEH 386
Query: 66 HRV-GYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDT-YMKMAEMSEDEMNAALENV 123
+ + GY +Q+ EAL D+E + +T + ++ + +E+ L
Sbjct: 387 NILPGYFEQNQA--------EAL--------DLEKTVMETIHDEVPDWKNEEVRTLL--- 427
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXX 183
R L + K VA LSGG++ +
Sbjct: 428 ----------------------GRFLFSGETVFKKVAALSGGEKARLALAKMLLTPANFL 465
Query: 184 XXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGY 243
TN+LD L+ L+ YE +L+SHD F+ V N I V + YS Y
Sbjct: 466 ILDEPTNHLDIPAKEMLEEALQEYEGTVVLVSHDRYFISRVANKIVEVRDGELVAYSGDY 525
Query: 244 AEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKM 298
+ E +KA+ + AEQA A+K+A AK E+K K+
Sbjct: 526 HYYLEKLEVEKAEEK---RRLAAEQA------AKKQAEKRAKQAAKKAEQKSKKV 571
sp|P75790|YBIT_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YBIT >gi|1787041
(AE000184) putative ATP-binding component of a transport
system [Escherichia coli] >gi|4062387|dbj|BAA35501|
(D90719) Hypothetical protein HI0658 [Escherichia coli]
>gi|4062394|dbj|BAA35508| (D90720) Hypothetical protein
HI0658 [Escherichia coli]
Length = 530
Score = 231 bits (584), Expect = 8e-60
Identities = 158/508 (31%), Positives = 263/508 (51%), Gaps = 15/508 (2%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHR 67
N++ FG + +FE++S + G G +GANG GKSTFM I+ G L P G V R
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65
Query: 68 VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQ 127
+G + Q + T + + + L++++ Q D + EMSE++ V +L+
Sbjct: 66 IGKLRQDQFAFEEFTVLDTVIMGHKELWEVK-QERDRIYALPEMSEEDGY----KVADLE 120
Query: 128 EELDNSDFYLIDAKVEETARGLGLTPLLDK--DVAELSGGQRTKXXXXXXXXXXXXXXXX 185
+ D Y +A+ E G+G+ P+ ++E++ G + +
Sbjct: 121 VKYGEMDGYSAEARAGELLLGVGI-PVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLL 179
Query: 186 XXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAE 245
TN LD + I WL+ L ++ I+ISHD F++ V + + + Y Y E
Sbjct: 180 DEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNYDE 239
Query: 246 FERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVET-I 304
+ + + +L + + + A+ A+L+ F++R AN + S QA +R +++ K+++ E
Sbjct: 240 YMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKA 299
Query: 305 SEKPKPHFDFKFSRKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSNGIGKS 363
S + P F+ +K R E + L G+ N PL +NL +E G+K+A +G+NG+GKS
Sbjct: 300 SSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKS 359
Query: 364 TLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ--EIKNPSQKTVLDDL--WDEYPSWNQAEL 419
TLLK+L+G + G V+ I YY Q E + + TV + + W + QA +
Sbjct: 360 TLLKTLVGDLQPDSGTVKWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQA-V 418
Query: 420 RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK 479
R L R+ + I+ VLSGGE+ ++ F KLM + NILI+DEPTNHLD+++ E L
Sbjct: 419 RSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESLN 478
Query: 480 RALIEYPGTVLMVSHEPEFYEGLVSDVI 507
AL Y GT++ VSH+ EF L + ++
Sbjct: 479 MALELYQGTLIFVSHDREFVSSLATRIL 506
Score = 76.1 bits (184), Expect = 6e-13
Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 39/245 (15%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V+ L+ GF + +F++++ L GE + +G NG GKST + + G L PD G V WS
Sbjct: 320 LEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWS 379
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV 123
+ R+GY A+ +Y F+ + + + +M + D+ A +
Sbjct: 380 ENARIGYY----------------AQDHEYEFENDLTVFE-WMSQWKQEGDDEQAVRSIL 422
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXX 183
G L D+ + K LSGG++ +
Sbjct: 423 GRLLFSQDD----------------------IKKPAKVLSGGEKGRMLFGKLMMQKPNIL 460
Query: 184 XXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGY 243
TN+LD E I L L+ Y+ I +SHD F+ + I + + +S Y
Sbjct: 461 IMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNY 520
Query: 244 AEFER 248
++ R
Sbjct: 521 EDYLR 525
emb|CAB74262.1| (AL139075) ABC transporter ATP-binding protein [Campylobacter
jejuni]
Length = 525
Score = 222 bits (560), Expect = 5e-57
Identities = 151/514 (29%), Positives = 255/514 (49%), Gaps = 15/514 (2%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ VKNL+ F ++ +FE+V+ +L++G+ G +GANG GKSTF+ I++G + G++++
Sbjct: 1 MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFLKILSGEIESSSGEIVF 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ ++ + Q + T ++A+ A + L++ + Y M+E DE+N E
Sbjct: 61 DEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKLY--MSEEFTDEIN---ER 115
Query: 123 VGELQ----EELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
+GEL+ EE N D + + E+ L + D ++ L + K
Sbjct: 116 LGELEIITAEEDPNYD---CETRCEKILSSLKIKD-FDALMSTLQSADKFKVLLAQVLFL 171
Query: 179 XXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITR 238
TN LD E I WL+N L +E ++ISHD F++++ I V I
Sbjct: 172 GADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKICTRILDVDFKQIRD 231
Query: 239 YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKM 298
++ Y ++ Q E + + E+ +L++FI R AN + + QA +R K L K+
Sbjct: 232 FAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANASKAKQATSRAKALEKL 291
Query: 299 EIVE-TISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGS 357
E+ E IS + P F+ +R+ V E K + Y++ L S + LK+E KIA IG+
Sbjct: 292 ELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFSNLELKIEKNDKIALIGA 351
Query: 358 NGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQA 417
NG+GKSTL K + I G + G ++ Y+ Q+ N + + W +
Sbjct: 352 NGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNLICENLKLYEWLMSEKFKDL 411
Query: 418 -ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+R L R+ + E LSGGE+ +L ++LM N L+LDEP NHLD+++
Sbjct: 412 DEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLMLERPNFLLLDEPDNHLDLESII 471
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L AL + G VL +SH+ E + + + E
Sbjct: 472 ALGEALYNFKGVVLCISHDRELVSAFANRIWHLE 505
Score = 66.0 bits (158), Expect = 7e-10
Identities = 58/244 (23%), Positives = 92/244 (36%), Gaps = 42/244 (17%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L +K + + D+ +F ++ ++ K + I +GANG GKST II + PD G +
Sbjct: 318 VLEIKGIGKAY-DKQLFSNLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHL 376
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+GY Q D N EN
Sbjct: 377 GATIELGYFPQ----------------------------------------DTSNLICEN 396
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ +L E L + F +D + R L +K A LSGG++ +
Sbjct: 397 L-KLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLMLERPNF 455
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
N+LD E I+ L L N++ + ISHD + N I+H+ +T +
Sbjct: 456 LLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGKLTDFRGT 515
Query: 243 YAEF 246
Y EF
Sbjct: 516 YQEF 519
emb|CAB45011.1| (AJ242839) putative ATP-binding protein [Neisseria gonorrhoeae]
Length = 636
Score = 222 bits (560), Expect = 5e-57
Identities = 151/521 (28%), Positives = 264/521 (49%), Gaps = 27/521 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+IL+V+N S G A+ + SF+L GE +G +G NG GKS+F+ I+TG D+G++
Sbjct: 1 MNILSVENASFAVGHVALLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILTGVQKLDDGQI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
I ++ Y+ Q + K T + +AE L +I + + E+ L
Sbjct: 61 IVQNNLKIVYVPQESFFDKDATVFDTVAEG---LGEIRDLLRRYHHVSHELENGSSELLL 117
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ + ELQ E++ D + +DA V++T LGL +K + LSGGQ+ +
Sbjct: 118 KELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NKKIGNLSGGQKKRVALAQAWVQKP 175
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD + I+WL+N LK +E + ++I+HD F+D + I + + Y
Sbjct: 176 DVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYP 235
Query: 241 MGYAEFERVFEEKKAQ---LESLHNA-----QVAEQAKLKDFIARKKANVATSGQAKARE 292
+++ + EKKAQ +E+ HN E+A ++ I ++ T + + R
Sbjct: 236 GSFSK----YSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEARR----TRNEGRVRR 287
Query: 293 KKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQK 351
+ + + E + + + +F +K +++ E + Y++ + + + ++ G K
Sbjct: 288 LEELRRQRAERRNVQGQVNFKLDSGKKSGKIIAELEHASFAYDDKVIMDKFSAILQRGDK 347
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK-TVLDDL--W 408
I IG NGIGK+T LK ++G + G + G+ Q++AY++Q ++ TV L
Sbjct: 348 IGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRSALNENDTVFYTLGQG 407
Query: 409 DEY--PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
++Y + + L + +S V LSGGE+ +L AKL +NIL+LDEP
Sbjct: 408 NDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLLLAKLFTRPANILVLDEP 467
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
TN LD+D +E L+ L +Y GTV +VSH+ F + +++ I
Sbjct: 468 TNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI 508
Score = 80.0 bits (194), Expect = 4e-14
Identities = 74/274 (27%), Positives = 109/274 (39%), Gaps = 43/274 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I +++ S + D+ I + S L +G+ IG +G NG GK+TF+ +I G L P G++
Sbjct: 319 IAELEHASFAYDDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRI 378
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSED--EMNAAL 120
K V Y DQ R AL E NDT D E+
Sbjct: 379 GSKQEVAYFDQF---------RSALNE------------NDTVFYTLGQGNDYVEVGGKK 417
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
++V E DF A+ + V+ LSGG+R +
Sbjct: 418 KHVMSYLE-----DFLFPPARAQSP-------------VSSLSGGERNRLLLAKLFTRPA 459
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITRY 239
TN LD + L++ L++Y+ L+SHD F+D V+ G G + Y
Sbjct: 460 NILVLDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSIVFEGQGRLKEY 519
Query: 240 SMGYAEF-ERVFEEKKAQLESLHNAQVAEQAKLK 272
GY ++ + E K Q S A E AK K
Sbjct: 520 IGGYQDYIDAKSREDKIQTASAPKASDVEPAKEK 553
Score = 78.0 bits (189), Expect = 2e-13
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 43/218 (19%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L + + +++SG+K+ IG NG GKS+ LK L G+ DG++ N I Y QE
Sbjct: 18 LLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILTGVQKLDDGQIIVQNNLKIVYVPQESFF 77
Query: 398 PSQKTVLD----------DLWDEY-----------------------------PSWN-QA 417
TV D DL Y W A
Sbjct: 78 DKDATVFDTVAEGLGEIRDLLRRYHHVSHELENGSSELLLKELNELQLEIEAKDGWKLDA 137
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
++ L +GL + ++ LSGG++ ++ A+ + ++L+LDEPTNHLD+DA
Sbjct: 138 AVKQTLGELGLPENK---KIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIW 194
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + G++++++H+ F + + + ++ + R
Sbjct: 195 LENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILR 232
emb|CAB44947.1| (AJ242840) putative ATP-binding protein [Neisseria gonorrhoeae]
Length = 636
Score = 221 bits (557), Expect = 1e-56
Identities = 149/521 (28%), Positives = 264/521 (50%), Gaps = 27/521 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+IL+V+N S G A+ + SF+L GE +G +G NG GKS+F+ I+TG D+G++
Sbjct: 1 MNILSVENASFAVGHVALLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILTGVQKLDDGQI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
I ++ Y+ Q + K T + +AE + D+ + + E+ L
Sbjct: 61 IVQNNLKIVYVPQESFFDKDATVFDTVAEGLGEICDL---LRRYHHVSHELENGSSELLL 117
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 118 KELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKRVALAQAWVQKP 175
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD + I+WL+N LK +E + ++I+HD F+D + I + + Y
Sbjct: 176 DVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYP 235
Query: 241 MGYAEFERVFEEKKAQ---LESLHNA-----QVAEQAKLKDFIARKKANVATSGQAKARE 292
+++ + EKKAQ +E+ HN E+A ++ I ++ T + + R
Sbjct: 236 GSFSK----YSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEARR----TRNEGRVRR 287
Query: 293 KKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQK 351
+ + + E + + + +F +K +++ E + Y++ + + + ++ G K
Sbjct: 288 LEELRRQRAERRNVQGQVNFKLDSGKKSGKIIAELEHASFAYDDKVIMDKFSAILQRGDK 347
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK-TVLDDL--W 408
I IG NGIGK+T LK ++G + G + G+ Q++AY++Q ++ TV L
Sbjct: 348 IGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRSALNENDTVFYTLGQG 407
Query: 409 DEY--PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
++Y + + L + +S V LSGGE+ +L AKL +NIL+LDEP
Sbjct: 408 NDYVEVGGKKKHVMSYLEDFLFPPARAQSPVSSLSGGERNRLLLAKLFTRPANILVLDEP 467
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
TN LD+D +E L+ L +Y GTV +VSH+ F + +++ I
Sbjct: 468 TNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI 508
Score = 80.0 bits (194), Expect = 4e-14
Identities = 74/274 (27%), Positives = 109/274 (39%), Gaps = 43/274 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I +++ S + D+ I + S L +G+ IG +G NG GK+TF+ +I G L P G++
Sbjct: 319 IAELEHASFAYDDKVIMDKFSAILQRGDKIGLIGPNGIGKTTFLKLILGELQPTYGRIRI 378
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSED--EMNAAL 120
K V Y DQ R AL E NDT D E+
Sbjct: 379 GSKQEVAYFDQF---------RSALNE------------NDTVFYTLGQGNDYVEVGGKK 417
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
++V E DF A+ + V+ LSGG+R +
Sbjct: 418 KHVMSYLE-----DFLFPPARAQSP-------------VSSLSGGERNRLLLAKLFTRPA 459
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITRY 239
TN LD + L++ L++Y+ L+SHD F+D V+ G G + Y
Sbjct: 460 NILVLDEPTNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSIVFEGQGRLKEY 519
Query: 240 SMGYAEF-ERVFEEKKAQLESLHNAQVAEQAKLK 272
GY ++ + E K Q S A E AK K
Sbjct: 520 IGGYQDYIDAKSREDKIQTASAPKASDVEPAKEK 553
Score = 78.4 bits (190), Expect = 1e-13
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 43/218 (19%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L + + +++SG+K+ IG NG GKS+ LK L G+ DG++ N I Y QE
Sbjct: 18 LLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILTGVQKLDDGQIIVQNNLKIVYVPQESFF 77
Query: 398 PSQKTVLD----------DLWDEY-----------------------------PSWN-QA 417
TV D DL Y W A
Sbjct: 78 DKDATVFDTVAEGLGEICDLLRRYHHVSHELENGSSELLLKELNELQLEIEAKDGWKLDA 137
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
++ L +GL + ++ LSGG++ ++ A+ + ++L+LDEPTNHLD+DA
Sbjct: 138 AVKQTLGELGLPENE---KIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIW 194
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + G++++++H+ F + + + ++ + R
Sbjct: 195 LENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILR 232
gb|AAF11195.1|AE002007_1 (AE002007) ABC transporter, ATP-binding protein, EF-3 family
[Deinococcus radiodurans]
Length = 705
Score = 219 bits (553), Expect = 3e-56
Identities = 155/511 (30%), Positives = 245/511 (47%), Gaps = 19/511 (3%)
Query: 9 LSHG---FGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKK 65
LSH +G + +D++F + G+ +G VG NG GKST + ++TG L+PD G+V +
Sbjct: 80 LSHAAKEYGPLTVLQDITFAVEPGDRVGLVGRNGAGKSTLLRLLTGQLLPDGGEVRHAPN 139
Query: 66 HRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGE 125
R + Q V G T L AF+ L +EA++ M+ SE AA+ +
Sbjct: 140 VRARALQQDPVFPAGATIDTVLESAFRDLDALEAELAAAAAAMSSGSE----AAILHHEA 195
Query: 126 LQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXX 185
L E+ Y ++ E+ G V LSGG+RT+
Sbjct: 196 LLEQFARRGGYERRSRKEQVTLAFGFRGREHDPVTGLSGGERTRLGLAALLVENPDVLLL 255
Query: 186 XXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAE 245
TN+LD + WL+ +L Y A ++ISHD F+D V ++ G + Y+ GY +
Sbjct: 256 DEPTNHLDIVMVEWLEGFLGRYPGAVLVISHDRQFLDNVTKETAYLRGGTLKVYAGGYTK 315
Query: 246 FERVFEEKKAQLESLHNAQVAEQAKLKDFIARKK------ANVATSGQA-KAREKKLAKM 298
F + + Q +L Q + A L+ R K + +A +A +AR ++ K
Sbjct: 316 FREQLDLELEQQAALFAQQSKQIADLQSSADRMKIWGLGMSKLARRAKAMQARVDRMQKG 375
Query: 299 EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGS 357
+ E+ F + + +V +A+ L E L ++++L++ G+++A IG
Sbjct: 376 AVAAPPPEERTTRITF-HAPESGEVVLDARHLTRRMGERTLFADLDLQIRQGERVAIIGR 434
Query: 358 NGIGKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWN 415
NG GK+TLL++L+GL PS D G V G YY+Q ++ L D+ EY
Sbjct: 435 NGAGKTTLLRTLLGLDPSDDPRGRVLTGARVSAGYYDQALRGVDPSQTLYDVAREYVQ-K 493
Query: 416 QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK 475
E L + +LSGGE+A+L +L + N+L+LDEPTNHLD++
Sbjct: 494 DHEAHTLLGTFMFPFDHHDKPARILSGGERARLALLRLAQEDHNLLVLDEPTNHLDMEML 553
Query: 476 EELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
E L+ AL Y GT++MVSH+ F EGL +
Sbjct: 554 EALEDALAAYTGTLVMVSHDRAFIEGLADRI 584
Score = 78.4 bits (190), Expect = 1e-13
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 38/214 (17%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE------------------- 381
+I VE G ++ +G NG GKSTLL+ L G + GEV
Sbjct: 95 DITFAVEPGDRVGLVGRNGAGKSTLLRLLTGQLLPDGGEVRHAPNVRARALQQDPVFPAG 154
Query: 382 -------KGNFQDIAYYEQEI-------KNPSQKTVL--DDLWDEYPSWNQAELRGALAR 425
+ F+D+ E E+ + S+ +L + L +++ E R +
Sbjct: 155 ATIDTVLESAFRDLDALEAELAAAAAAMSSGSEAAILHHEALLEQFARRGGYERRSRKEQ 214
Query: 426 VGLT---AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL 482
V L + V LSGGE+ +L A L+ ++L+LDEPTNHLD+ E L+ L
Sbjct: 215 VTLAFGFRGREHDPVTGLSGGERTRLGLAALLVENPDVLLLDEPTNHLDIVMVEWLEGFL 274
Query: 483 IEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTRI 516
YPG VL++SH+ +F + + + T ++
Sbjct: 275 GRYPGAVLVISHDRQFLDNVTKETAYLRGGTLKV 308
Score = 64.0 bits (153), Expect = 3e-09
Identities = 64/301 (21%), Positives = 113/301 (37%), Gaps = 51/301 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDE--GKV 60
+L+ ++L+ G+R +F D+ ++ +GE + +G NG GK+T + + G D+ G+V
Sbjct: 400 VLDARHLTRRMGERTLFADLDLQIRQGERVAIIGRNGAGKTTLLRTLLGLDPSDDPRGRV 459
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
+ + GY DQ AL
Sbjct: 460 LTGARVSAGYYDQ---------------------------------------------AL 474
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL--LDKDVAELSGGQRTKXXXXXXXXX 178
V Q D + Y+ T G + P DK LSGG+R +
Sbjct: 475 RGVDPSQTLYDVAREYVQKDHEAHTLLGTFMFPFDHHDKPARILSGGERARLALLRLAQE 534
Query: 179 XXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITR 238
TN+LD E + L++ L Y +++SHD F++ + + I+ +
Sbjct: 535 DHNLLVLDEPTNHLDMEMLEALEDALAAYTGTLVMVSHDRAFIEGLADRIWLIEDGQFYE 594
Query: 239 YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKM 298
Y G+ ++ R A+LE+ VA + K + +A E +A++
Sbjct: 595 YP-GWEDY-RAKHRSAAELEAEAARTVAAATPKVALAPKAKGLWHLKREVEAIEADIARL 652
Query: 299 E 299
E
Sbjct: 653 E 653
emb|CAB44971.1| (AJ242841) putative ATP-binding protein [Neisseria meningitidis]
Length = 636
Score = 219 bits (553), Expect = 3e-56
Identities = 152/521 (29%), Positives = 262/521 (50%), Gaps = 27/521 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+IL+V+N S G A+ + SF+L GE IG +G NG GKS+F+ I+ G D+G++
Sbjct: 1 MNILSVENASFAVGHVALLDKTSFQLDSGEKIGLIGRNGAGKSSFLKILAGVQKLDDGQI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
I ++ Y+ Q + K T + +AE L +I + + E+ A L
Sbjct: 61 IVQNNLKIVYVPQESFFDKEATVFDTVAEG---LGEIRDLLRRYHHVSHELENGSSEALL 117
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 118 KELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKRVALAQAWVQKP 175
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD + I+WL+N LK +E + ++I+HD F+D + I + + Y
Sbjct: 176 DVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYP 235
Query: 241 MGYAEFERVFEEKKAQ---LESLHNA-----QVAEQAKLKDFIARKKANVATSGQAKARE 292
+++ + EKKAQ +E+ HN E+A ++ I ++ T + + R
Sbjct: 236 GSFSK----YSEKKAQELAVEAEHNRLFDKFHAQEEAWIRKGIEARR----TRNEGRVRR 287
Query: 293 KKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQK 351
+ + + E + + + +F K +++ E + Y + + + + ++ G K
Sbjct: 288 LEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFTYGDKVIMDKFSAILQRGDK 347
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK-TVLDDL--W 408
I IG NGIGK+T LK ++G + G + G+ Q++AY++Q ++ TV L
Sbjct: 348 IGLIGPNGIGKTTFLKLILGELQPTYGRIRIGSKQEVAYFDQFRSTLNENDTVFYTLGQG 407
Query: 409 DEY--PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
++Y + + L + +S V LSGGE+ +L AKL +NILILDEP
Sbjct: 408 NDYVEVGGKKKHVMSYLEDFLFHPARAQSPVSSLSGGERNRLLLAKLFTRPANILILDEP 467
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
TN LD+D +E L+ L +Y GTV +VSH+ F + +++ I
Sbjct: 468 TNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI 508
Score = 79.6 bits (193), Expect = 6e-14
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 43/218 (19%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L + + +++SG+KI IG NG GKS+ LK L G+ DG++ N I Y QE
Sbjct: 18 LLDKTSFQLDSGEKIGLIGRNGAGKSSFLKILAGVQKLDDGQIIVQNNLKIVYVPQESFF 77
Query: 398 PSQKTVLD----------DLWDEY-----------------------------PSWN-QA 417
+ TV D DL Y W A
Sbjct: 78 DKEATVFDTVAEGLGEIRDLLRRYHHVSHELENGSSEALLKELNELQLEIEAKDGWKLDA 137
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
++ L +GL + ++ LSGG++ ++ A+ + ++L+LDEPTNHLD+DA
Sbjct: 138 AVKQTLGELGLPENE---KIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIW 194
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + G++++++H+ F + + + ++ + R
Sbjct: 195 LENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILR 232
emb|CAB44978.1| (AJ242842) putative ATP-binding protein [Neisseria meningitidis]
Length = 636
Score = 217 bits (548), Expect = 1e-55
Identities = 150/521 (28%), Positives = 261/521 (49%), Gaps = 27/521 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+IL+V+N S G A+ + SF+L GE +G +G NG GKS+F+ I+ G D+G++
Sbjct: 1 MNILSVENASFAIGHVALLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILAGVQKLDDGQI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
I ++ Y+ Q + K T + +AE L +I + + E+ A L
Sbjct: 61 IIQNNLKIVYVPQESFFDKDATVFDTVAEG---LGEIRDLLRRYHRVGHELENGSGEALL 117
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 118 KELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKRVALAQAWVQKP 175
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD + I+WL+N LK +E + ++I+HD F+D + I + + Y
Sbjct: 176 DVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILRSYP 235
Query: 241 MGYAEFERVFEEKKAQ---LESLHNA-----QVAEQAKLKDFIARKKANVATSGQAKARE 292
+++ + EKK Q +E+ HN E+A ++ I ++ T + + R
Sbjct: 236 GSFSK----YSEKKVQELAVEAEHNRLFDKFHAQEEAWIRKGIEARR----TRNEGRVRR 287
Query: 293 KKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQK 351
+ + + E + + + +F K +++ E + Y + + + + ++ G K
Sbjct: 288 LEELRRQRAERRNVQGQVNFKLDSGEKSGKIIAELEHASFAYGDKVIMDKFSAILQRGDK 347
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK-TVLDDL--W 408
I IG NGIGK+T LK ++G + G + G+ Q++AY++Q ++ TV L
Sbjct: 348 IGLIGPNGIGKTTFLKLILGELNPTYGRIRIGSKQEVAYFDQFRSTLNENDTVFYTLGQG 407
Query: 409 DEY--PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
++Y + + L + +S V LSGGE+ +L AKL +NILILDEP
Sbjct: 408 NDYVEVGGKKKHVMSYLEDFLFHPARAQSPVSSLSGGERNRLLLAKLFTRPANILILDEP 467
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
TN LD+D +E L+ L +Y GTV +VSH+ F + +++ I
Sbjct: 468 TNDLDIDTQELLEDLLRDYQGTVFLVSHDRMFLDNVITQSI 508
Score = 78.0 bits (189), Expect = 2e-13
Identities = 56/218 (25%), Positives = 98/218 (44%), Gaps = 43/218 (19%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L + + +++SG+K+ IG NG GKS+ LK L G+ DG++ N I Y QE
Sbjct: 18 LLDKTSFQLDSGEKVGLIGRNGAGKSSFLKILAGVQKLDDGQIIIQNNLKIVYVPQESFF 77
Query: 398 PSQKTVLD----------DLWDEY-----------------------------PSWN-QA 417
TV D DL Y W A
Sbjct: 78 DKDATVFDTVAEGLGEIRDLLRRYHRVGHELENGSGEALLKELNELQLEIEAKDGWKLDA 137
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
++ L +GL + ++ LSGG++ ++ A+ + ++L+LDEPTNHLD+DA
Sbjct: 138 AVKQTLGELGLPENE---KIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIW 194
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + G++++++H+ F + + + ++ + R
Sbjct: 195 LENLLKAFEGSLVVITHDRRFLDNIATRIVELDRGILR 232
gb|AAD07900.1| (AE000596) ABC transporter, ATP-binding protein (yheS)
[Helicobacter pylori 26695]
Length = 533
Score = 216 bits (545), Expect = 3e-55
Identities = 150/511 (29%), Positives = 258/511 (50%), Gaps = 10/511 (1%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L NL+ + + +FE+V+ +L K + G +GANG GKSTF+ I++ ++ G+VI
Sbjct: 1 MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVII 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ ++G + Q + + ++A+ + L+D + Y + ++S+D++NA L
Sbjct: 61 TSGMKMGVLGQDQYAFEDLSLKDAVLIGNKRLYDAIKEKERLYTE-GDLSDDKVNARL-- 117
Query: 123 VGELQEELDNSD-FYLIDAKVEETARGLGLTPLLDKDVAE-LSGGQRTKXXXXXXXXXXX 180
GEL+ D Y + +E+ LG+ D+ + L + K
Sbjct: 118 -GELETICVEEDPMYECEVAIEKILEDLGIPSSKHNDLMKTLPSSDKFKILLAQVLFPKP 176
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN LD I WL+N LK +E ++ISHD F++ V I + + +S
Sbjct: 177 DILLLDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFS 236
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEI 300
Y ++ Q E+ N ++ E+ +L+ FIAR AN + + QA +R+K+L K++I
Sbjct: 237 GNYDDWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDI 296
Query: 301 VE-TISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLS-SEINLKVESGQKIAFIGSN 358
+S + P FK R E +++ Y++ + ++++LKV KIA IG N
Sbjct: 297 QSLAVSSRRDPSIIFKPKRTIGNEALECENISKSYDDQIVLNQVSLKVMPKDKIALIGPN 356
Query: 359 GIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQKTVLDDLWDEYPSWNQ 416
G+GKSTL K L+ + G V+ G Y+ Q + ++T+ L++
Sbjct: 357 GVGKSTLCKILVEELKPDKGVVKWGATVSKGYFPQNVSEEISGEETLYQWLFNFNKKIES 416
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
AE+R AL R+ ++ E V LSGGE+ ++ +KLM N L+LDEPTNHLD++A
Sbjct: 417 AEVRNALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAII 476
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
L AL ++ G ++ VSH+ E + + +I
Sbjct: 477 ALGEALFKFDGALICVSHDRELIDAYANRII 507
Score = 69.5 bits (167), Expect = 6e-11
Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 40/218 (18%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-------------EKGN 384
L +N+K++ ++ IG+NG GKST LK L I GEV ++
Sbjct: 16 LFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMKMGVLGQDQYA 75
Query: 385 FQDIA----------------------YYEQEIKNPSQKTVLDDLW----DEYPSWN-QA 417
F+D++ Y E ++ + L +L +E P + +
Sbjct: 76 FEDLSLKDAVLIGNKRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPMYECEV 135
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ L +G+ + + + L ++ K+ A+++ + +IL+LDEPTN+LD++A E
Sbjct: 136 AIEKILEDLGIPSSKHNDLMKTLPSSDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEW 195
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + GT++++SH+ F + + +++ + + R
Sbjct: 196 LENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVR 233
gi|4155369 (AE001509) putative abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 533
Score = 216 bits (544), Expect = 4e-55
Identities = 152/511 (29%), Positives = 258/511 (49%), Gaps = 10/511 (1%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L NL+ + + +FE+V+ +L K + G +GANG GKSTF+ I++ ++ G+VI
Sbjct: 1 MLQTINLTQRYATKKLFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVII 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ R+G + Q + + ++A+ + L+D + Y + ++S+D++NA L
Sbjct: 61 TSGMRMGVLGQDQYAFEDLSLKDAVLIGNRRLYDAIKEKERLYTE-GDLSDDKVNARL-- 117
Query: 123 VGELQEELDNSD-FYLIDAKVEETARGLGLTPLLDKDVAE-LSGGQRTKXXXXXXXXXXX 180
GEL+ D Y + +E+ LG+ D+ + L + K
Sbjct: 118 -GELETICVEEDPMYECEVVIEKILEDLGIPSSKHNDLMKTLPSSDKFKILLAQVLFPKP 176
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN LD I WL+N LK +E ++ISHD F++ V I + + +S
Sbjct: 177 DILLLDEPTNNLDLNAIEWLENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVREFS 236
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEI 300
Y ++ Q E+ N ++ E+ +L+ FIAR AN + + QA +R+K+L K++I
Sbjct: 237 GNYDDWYIASTLIAKQQEAERNKKLKEKEELEKFIARFSANASKAKQATSRQKQLDKLDI 296
Query: 301 VE-TISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLS-SEINLKVESGQKIAFIGSN 358
IS + P FK R E +++ Y++ + ++++LKV KIA IG N
Sbjct: 297 QSLAISSRRDPSIIFKPKRTIGNEALECENISKSYDDQIVLNQVSLKVMPKDKIALIGPN 356
Query: 359 GIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQKTVLDDLWDEYPSWNQ 416
G+GKSTL K L+ + G V+ G Y+ Q + ++T+ L++
Sbjct: 357 GVGKSTLCKILVEELKPDTGVVKWGATVLKGYFPQNVSEEISGEETLYQWLFNFNKKIES 416
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
AE+R AL R+ ++ E V LSGGE+ ++ +KLM N L+LDEPTNHLD++A
Sbjct: 417 AEVRNALGRMLFNGEEQEKCVNALSGGEKHRMVLSKLMLEGGNFLVLDEPTNHLDLEAII 476
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
L AL ++ G ++ VSH+ E + + +I
Sbjct: 477 ALGEALFKFDGALICVSHDRELIDAYANRII 507
Score = 69.1 bits (166), Expect = 8e-11
Identities = 51/218 (23%), Positives = 102/218 (46%), Gaps = 40/218 (18%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-------------EKGN 384
L +N+K++ ++ IG+NG GKST LK L I GEV ++
Sbjct: 16 LFENVNIKLDKNKRYGLIGANGAGKSTFLKILSKSIDCSSGEVIITSGMRMGVLGQDQYA 75
Query: 385 FQDIA----------------------YYEQEIKNPSQKTVLDDLW----DEYPSWN-QA 417
F+D++ Y E ++ + L +L +E P + +
Sbjct: 76 FEDLSLKDAVLIGNRRLYDAIKEKERLYTEGDLSDDKVNARLGELETICVEEDPMYECEV 135
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ L +G+ + + + L ++ K+ A+++ + +IL+LDEPTN+LD++A E
Sbjct: 136 VIEKILEDLGIPSSKHNDLMKTLPSSDKFKILLAQVLFPKPDILLLDEPTNNLDLNAIEW 195
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+ L + GT++++SH+ F + + +++ + + R
Sbjct: 196 LENNLKRHEGTMVVISHDRHFLNAVCTHILDLDFHSVR 233
emb|CAB71215.1| (AL138538) putative ABC transpoter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 547
Score = 215 bits (541), Expect = 9e-55
Identities = 155/511 (30%), Positives = 257/511 (49%), Gaps = 27/511 (5%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
GD+ I +DV+ L G IG VG NG GKST + I+ G P G S + VG + Q
Sbjct: 9 GDKVILDDVTLSFLPGAKIGVVGPNGAGKSTVLKIMAGLEQPSNGDAFLSPGYTVGILLQ 68
Query: 74 HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE-MSEDEMNAALENVGELQEELDN 132
L + KT E + E + +++ ++ D + ++AE M+ D +A LE +G+LQEELD+
Sbjct: 69 EPPLNEEKTVLENVQEG---VAEVKGKL-DRFNEIAEQMATDYSDALLEEMGKLQEELDH 124
Query: 133 SDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYL 192
++ + +DA++E+ LG P D V LSGG++ + TN+L
Sbjct: 125 ANAWDLDAQLEQAMDALGCPPG-DWPVVNLSGGEKRRVALCKLLLEAPDLLLLDEPTNHL 183
Query: 193 DEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEE 252
D E + WL+ +L YE + ++HD F+D V I V + Y Y+++ E
Sbjct: 184 DAESVNWLEQHLAKYEGTVVAVTHDRYFLDNVAGWICEVDRGRLHGYEGNYSKY---LET 240
Query: 253 KKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHF 312
K +L+ Q +LKD + ++N A QAK++ + LA+ E + ++K +
Sbjct: 241 KATRLKVEGQKDAKRQKRLKDELEWVRSN-AKGRQAKSKAR-LARYEEMAAEADKMRK-L 297
Query: 313 DFKFSRKP-----SRLVFEAKDLVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLL 366
DF+ + P +V E +L + E L +++ + + IG NG GK+TL
Sbjct: 298 DFEEIQIPPGPRLGNVVVEVNNLSKAFGEKVLIDDLSFTLPRNGIVGVIGPNGAGKTTLF 357
Query: 367 KSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVL-----DDLWDEYPSWNQAEL-- 419
K + G GE++ G+ I+Y +Q ++ K L D+L +Y + Q E+
Sbjct: 358 KMIQGFEEPDSGEIKVGDTVKISYVDQSREHIDPKKTLWAVVSDEL--DYINVGQVEMPS 415
Query: 420 RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK 479
R ++ G + VLSGGE+ +L A + N+L+LDEPTN LDV+ L+
Sbjct: 416 RAYVSAFGFKGPDQQKAAGVLSGGERNRLNLALTLKQGGNLLLLDEPTNDLDVETLSSLE 475
Query: 480 RALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
AL+E+PG ++VSH+ F + + + ++ E
Sbjct: 476 NALLEFPGCAVVVSHDRWFLDRVATHILAYE 506
Score = 70.2 bits (169), Expect = 4e-11
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 39/232 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ V NLS FG++ + +D+SF L + +G +G NG GK+T +I G PD G++
Sbjct: 314 VVEVNNLSKAFGEKVLIDDLSFTLPRNGIVGVIGPNGAGKTTLFKMIQGFEEPDSGEIKV 373
Query: 63 SKKHRVGYMDQ-HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
++ Y+DQ + KT +++ Y+
Sbjct: 374 GDTVKISYVDQSREHIDPKKTLWAVVSDELDYI--------------------------- 406
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
NVG+++ + ++ +A G P K LSGG+R +
Sbjct: 407 NVGQVE----------MPSRAYVSAFGF-KGPDQQKAAGVLSGGERNRLNLALTLKQGGN 455
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHG 233
TN LD E + L+N L + +++SHD F+D V I G
Sbjct: 456 LLLLDEPTNDLDVETLSSLENALLEFPGCAVVVSHDRWFLDRVATHILAYEG 507
gb|AAF31030.1|AC005893_1 (AC005893) ABC transporter protein 1 [Leishmania major]
Length = 597
Score = 212 bits (534), Expect = 6e-54
Identities = 143/509 (28%), Positives = 250/509 (49%), Gaps = 22/509 (4%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
G + + +D LL G G +G NG GK+T + + + EG S ++ +++Q
Sbjct: 86 GKQVLLDDTDLVLLTGHKYGLIGRNGAGKTTLLRALAEREL--EGV---SPFMQILHVEQ 140
Query: 74 HAVLGKGKTTREALAEAFQYLFDIE-AQINDTYMKMAEMSEDEMNAALENVGELQEELDN 132
V G +T E L D+E AQ+ ++ + ++ E N L E+ LD
Sbjct: 141 EIVAG-AETPLEVLLAT-----DVERAQLLHEEQELLKQNDTEANTRLN---EVYARLDA 191
Query: 133 SDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNY 191
D + +A+ GL T ++ +LSGG R + TN+
Sbjct: 192 IDAHSAEARAATILHGLSFTQDMMTSPTKQLSGGWRMRVALARALFVEPDVLLLDEPTNH 251
Query: 192 LDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFE 251
LD +LWL+ +L++++ I++SH F++ V + I H+ G + Y+ Y +FE
Sbjct: 252 LDLFAVLWLEQFLRDWQKTLIVVSHSRTFLNNVCSEIIHLIGHHLHYYNGNYDQFEITRV 311
Query: 252 EKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPH 311
E++ Q + H AQ ++A ++ FI + + N + A++R K L +ME+V + P+
Sbjct: 312 EQERQQKKQHAAQEKQRAHIQAFIDKFRYNANRAKMAQSRIKALERMEMVADVVTDPQFA 371
Query: 312 FDFKFSRKPSRLVFEAKDLVIGYNEPLS--SEINLKVESGQKIAFIGSNGIGKSTLLKSL 369
F F + S E D GY +S ++N+ ++ +I +G+NG+GKST +
Sbjct: 372 FTFPDAEPVSGSFIEMVDCEFGYKPGVSLFKDVNMGIDESSRIVLVGANGVGKSTFMNVC 431
Query: 370 MGLIPSLDGEVEKGNFQDIAYYEQ---EIKNPSQKTVLDDLWDEYPSWNQAELRGALARV 426
G + G V + +A++ Q E P Q + L+ L ++P +LR L +
Sbjct: 432 TGALEPRSGTVVRNKKIRVAHFAQHNMESLTP-QLSSLEFLRSKFPHMEDQQLRAHLGSM 490
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
GL+ ++ +Y LSGG++++L A + + ++L+LDEPTNHLD+D L AL+ Y
Sbjct: 491 GLSGERALQPIYTLSGGQKSRLVLAWITFQKPHLLLLDEPTNHLDIDTVNALIEALLAYN 550
Query: 487 GTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
G +L++SH+ F L D+ CE+ T +
Sbjct: 551 GGLLVISHDEYFITSLCDDIFVCEDNTVK 579
gb|AAF27952.1|AC005767_13 (AC005767) ABC transporter protein 1 [Leishmania major]
>gi|6778474|gb|AAF28378.1|AC005766_12 (AC005766) ABC
transporter protein 1 [Leishmania major]
Length = 724
Score = 212 bits (534), Expect = 6e-54
Identities = 143/509 (28%), Positives = 250/509 (49%), Gaps = 22/509 (4%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
G + + +D LL G G +G NG GK+T + + + EG S ++ +++Q
Sbjct: 213 GKQVLLDDTDLVLLTGHKYGLIGRNGAGKTTLLRALAEREL--EGV---SPFMQILHVEQ 267
Query: 74 HAVLGKGKTTREALAEAFQYLFDIE-AQINDTYMKMAEMSEDEMNAALENVGELQEELDN 132
V G +T E L D+E AQ+ ++ + ++ E N L E+ LD
Sbjct: 268 EIVAG-AETPLEVLLAT-----DVERAQLLHEEQELLKQNDTEANTRLN---EVYARLDA 318
Query: 133 SDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNY 191
D + +A+ GL T ++ +LSGG R + TN+
Sbjct: 319 IDAHSAEARAATILHGLSFTQDMMTSPTKQLSGGWRMRVALARALFVEPDVLLLDEPTNH 378
Query: 192 LDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFE 251
LD +LWL+ +L++++ I++SH F++ V + I H+ G + Y+ Y +FE
Sbjct: 379 LDLFAVLWLEQFLRDWQKTLIVVSHSRTFLNNVCSEIIHLIGHHLHYYNGNYDQFEITRV 438
Query: 252 EKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPH 311
E++ Q + H AQ ++A ++ FI + + N + A++R K L +ME+V + P+
Sbjct: 439 EQERQQKKQHAAQEKQRAHIQAFIDKFRYNANRAKMAQSRIKALERMEMVADVVTDPQFA 498
Query: 312 FDFKFSRKPSRLVFEAKDLVIGYNEPLS--SEINLKVESGQKIAFIGSNGIGKSTLLKSL 369
F F + S E D GY +S ++N+ ++ +I +G+NG+GKST +
Sbjct: 499 FTFPDAEPVSGSFIEMVDCEFGYKPGVSLFKDVNMGIDESSRIVLVGANGVGKSTFMNVC 558
Query: 370 MGLIPSLDGEVEKGNFQDIAYYEQ---EIKNPSQKTVLDDLWDEYPSWNQAELRGALARV 426
G + G V + +A++ Q E P Q + L+ L ++P +LR L +
Sbjct: 559 TGALEPRSGTVVRNKKIRVAHFAQHNMESLTP-QLSSLEFLRSKFPHMEDQQLRAHLGSM 617
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
GL+ ++ +Y LSGG++++L A + + ++L+LDEPTNHLD+D L AL+ Y
Sbjct: 618 GLSGERALQPIYTLSGGQKSRLVLAWITFQKPHLLLLDEPTNHLDIDTVNALIEALLAYN 677
Query: 487 GTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
G +L++SH+ F L D+ CE+ T +
Sbjct: 678 GGLLVISHDEYFITSLCDDIFVCEDNTVK 706
emb|CAB13316| (Z99111) similar to ABC transporter (ATP-binding protein) [Bacillus
subtilis] >gi|3282128 (AF012285) YkpA [Bacillus
subtilis]
Length = 540
Score = 208 bits (524), Expect = 9e-53
Identities = 143/515 (27%), Positives = 258/515 (49%), Gaps = 18/515 (3%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ V N+S F DR +FEDV+ + G G +GANG GKSTF+ +++G + P G V
Sbjct: 1 MIAVNNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKVLSGEIEPQTGDVHM 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
S R+ + Q+ + + + + L+++ + + YMK ED + AA
Sbjct: 61 SPGERLAVLKQNHFEYEEYEVLKVVIMGHKRLYEVMQEKDAIYMKPDFSDEDGIRAA--- 117
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXX 181
EL+ E + + +++ +GLG++ L K +A+L G ++ K
Sbjct: 118 --ELEGEFAELNGWEAESEAAILLKGLGISEDLHTKKMADLGGSEKVKVLLAQALFGKPD 175
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD + I WL+ +L N+EN I++SHD F+++V H+ L + +
Sbjct: 176 VLLLDEPTNHLDLQAIQWLEEFLINFENTVIVVSHDRHFLNKVCT---HIADLDFNKIQI 232
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLK---DFIARKKANVATSGQAKAREKKLAKM 298
++ +E + L+ A ++ ++K +F+AR AN + S QA +R+K L K+
Sbjct: 233 YVGNYDFWYESSQLALKLSQEANKKKEEQIKQLQEFVARFSANASKSKQATSRKKLLEKI 292
Query: 299 EIVETI-SEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIG 356
+ + S + P+ +F R+ V + L + + ++ + KIAF G
Sbjct: 293 TLDDIKPSSRRYPYVNFTPEREIGNDVLRVEGLTKTIDGVKVLDNVSFIMNREDKIAFTG 352
Query: 357 SNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLD--DLWDEYPSW 414
N + +TL K + G + + G + G AY+ ++ + + L+ D +Y
Sbjct: 353 RNELAVTTLFKIISGEMEADSGTFKWGVTTSQAYFPKDNSEYFEGSDLNLVDWLRQYSPH 412
Query: 415 NQAE--LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
+Q+E LRG L R+ + +++ + VLSGGE+ + +K M + +NILILDEPTNHLD+
Sbjct: 413 DQSESFLRGFLGRMLFSGEEVHKKANVLSGGEKVRCMLSKAMLSGANILILDEPTNHLDL 472
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
++ L LI + G +L SH+ +F + + + +I
Sbjct: 473 ESITALNNGLISFKGAMLFTSHDHQFVQTIANRII 507
Score = 73.7 bits (178), Expect = 3e-12
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 38/211 (18%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ---- 393
L ++N+K G IG+NG GKST LK L G I G+V + +A +Q
Sbjct: 16 LFEDVNIKFTPGNCYGLIGANGAGKSTFLKVLSGEIEPQTGDVHMSPGERLAVLKQNHFE 75
Query: 394 ------------------EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIES 435
E+ + + + AEL G A + + E+
Sbjct: 76 YEEYEVLKVVIMGHKRLYEVMQEKDAIYMKPDFSDEDGIRAAELEGEFAELNGWEAESEA 135
Query: 436 RVYV----------------LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK 479
+ + L G E+ K+ A+ + + ++L+LDEPTNHLD+ A + L+
Sbjct: 136 AILLKGLGISEDLHTKKMADLGGSEKVKVLLAQALFGKPDVLLLDEPTNHLDLQAIQWLE 195
Query: 480 RALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
LI + TV++VSH+ F + + + + +
Sbjct: 196 EFLINFENTVIVVSHDRHFLNKVCTHIADLD 226
Score = 51.2 bits (120), Expect = 2e-05
Identities = 56/244 (22%), Positives = 90/244 (35%), Gaps = 38/244 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L V+ L+ + ++VSF + + + I F G N +T II+G + D G W
Sbjct: 319 VLRVEGLTKTIDGVKVLDNVSFIMNREDKIAFTGRNELAVTTLFKIISGEMEADSGTFKW 378
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
G TT +A + N Y + ++++ L +
Sbjct: 379 -----------------GVTTSQAYFP----------KDNSEYFEGSDLN-------LVD 404
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
D S+ +L R L + K LSGG++ +
Sbjct: 405 WLRQYSPHDQSESFLRGF----LGRMLFSGEEVHKKANVLSGGEKVRCMLSKAMLSGANI 460
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
TN+LD E I L N L +++ A + SHD F+ + N I + GI M
Sbjct: 461 LILDEPTNHLDLESITALNNGLISFKGAMLFTSHDHQFVQTIANRIIEITPNGIVDKQMS 520
Query: 243 YAEF 246
Y EF
Sbjct: 521 YDEF 524
dbj|BAA20107| (D86418) YfmR [Bacillus subtilis] >gi|2633050|emb|CAB12556|
(Z99107) similar to ABC transporter (ATP-binding
protein) [Bacillus subtilis] >gi|2633061|emb|CAB12566|
(Z99108) similar to ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 629
Score = 206 bits (519), Expect = 3e-52
Identities = 150/524 (28%), Positives = 255/524 (48%), Gaps = 33/524 (6%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MSIL +NL +GD+ +F+ +SF + + E IG +G NG GKST + +I G +EG++
Sbjct: 1 MSILKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKSTLLKVIAGLESIEEGEI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
S +V ++ Q L G+T E + + + ++ + E+E
Sbjct: 61 TKSGSVQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYEKALYELGKDPENEQRQ-- 118
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+++ Q ++D ++ + + + LG+ + K V ELSGGQ+ +
Sbjct: 119 KHLLAAQAKMDANNAWDANTLAKTVLSKLGVND-VTKPVNELSGGQKKRVAIAKNLIQPA 177
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD E I WL+ YL Y A +L++HD F++ V N IY + + Y
Sbjct: 178 DLLILDEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFLNRVTNRIYELERGSLYTYK 237
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEI 300
Y F E++AQ E ++ K ++ + R+ A + +A++ ++K A+++
Sbjct: 238 GNYEVFLEKRAEREAQAEQ-------KETKRQNLLRRELAWLRRGAKARSTKQK-ARIDR 289
Query: 301 VETISEKPKPH----FDFKF-SRKPSRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAF 354
VET+ E+ P DF S + + V EA++++I Y+ L N V G++I
Sbjct: 290 VETLKEQTGPQSSGSLDFAIGSHRLGKQVIEAENVMIAYDGRMLVDRFNELVIPGERIGI 349
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSW 414
IG NGIGK+TLL +L G G++ G I YY Q+ + + + D E
Sbjct: 350 IGPNGIGKTTLLNALAGRHTPDGGDITIGQTVRIGYYTQDHSEMNGELKVIDYIKE---- 405
Query: 415 NQAELRGALARVGLTAKQIESR-----------VYVLSGGEQAKLRFAKLMNTESNILIL 463
AE+ +TA+Q+ R + LSGGE+ +L +++ E N+L L
Sbjct: 406 -TAEVVKTADGDMITAEQMLERFLFPRSMQQTYIRKLSGGEKRRLYLLQVLMQEPNVLFL 464
Query: 464 DEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
DEPTN LD + L+ + ++PG V+ VSH+ F + +V +I
Sbjct: 465 DEPTNDLDTETLSVLEDYIDQFPGVVITVSHDRYFLDRVVDRLI 508
Score = 91.3 bits (223), Expect = 2e-17
Identities = 65/227 (28%), Positives = 109/227 (47%), Gaps = 40/227 (17%)
Query: 324 VFEAKDLVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ +A++L Y + L I+ +E ++I IG NG GKSTLLK + GL +GE+ K
Sbjct: 3 ILKAENLYKTYGDKTLFDHISFHIEENERIGLIGPNGTGKSTLLKVIAGLESIEEGEITK 62
Query: 383 GNFQDIAYYEQEIKNPSQKTVLDDLW----------------------DEYPSWNQAELR 420
+ + Q+ + P+ +TVL+ ++ D Q L
Sbjct: 63 SGSVQVEFLHQDPELPAGQTVLEHIYSGESAVMKTLREYEKALYELGKDPENEQRQKHLL 122
Query: 421 GALARVGLT--------AKQIESRVYV---------LSGGEQAKLRFAKLMNTESNILIL 463
A A++ AK + S++ V LSGG++ ++ AK + +++LIL
Sbjct: 123 AAQAKMDANNAWDANTLAKTVLSKLGVNDVTKPVNELSGGQKKRVAIAKNLIQPADLLIL 182
Query: 464 DEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
DEPTNHLD + E L+ L +YPG V++V+H+ F + + + E
Sbjct: 183 DEPTNHLDNETIEWLEGYLSQYPGAVMLVTHDRYFLNRVTNRIYELE 229
Score = 75.7 bits (183), Expect = 8e-13
Identities = 69/301 (22%), Positives = 123/301 (39%), Gaps = 46/301 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ +N+ + R + + + ++ GE IG +G NG GK+T +N + G PD G +
Sbjct: 318 VIEAENVMIAYDGRMLVDRFNELVIPGERIGIIGPNGIGKTTLLNALAGRHTPDGGDITI 377
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL-- 120
+ R+GY Q EMN L
Sbjct: 378 GQTVRIGYYTQ--------------------------------------DHSEMNGELKV 399
Query: 121 -ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXX 179
+ + E E + +D +I A+ + R L + + +LSGG++ +
Sbjct: 400 IDYIKETAEVVKTADGDMITAE-QMLERFLFPRSMQQTYIRKLSGGEKRRLYLLQVLMQE 458
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITR 238
TN LD E + L++Y+ + I +SHD F+D VV+ + G G I+R
Sbjct: 459 PNVLFLDEPTNDLDTETLSVLEDYIDQFPGVVITVSHDRYFLDRVVDRLIVFEGNGVISR 518
Query: 239 YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKM 298
+ Y+++ EE KA+ + A + A+ + RKK + + E K+A++
Sbjct: 519 FQGSYSDY---MEESKAKKAAPKPAAEEKTAEAEPKKKRKKLSYKDQLEWDGIEDKIAQL 575
Query: 299 E 299
E
Sbjct: 576 E 576
emb|CAA16054| (AL021246) hypothetical protein Rv2477c [Mycobacterium
tuberculosis]
Length = 558
Score = 205 bits (517), Expect = 6e-52
Identities = 151/521 (28%), Positives = 253/521 (47%), Gaps = 25/521 (4%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I +K + GD+ I +DV+ G IG VG NG GKS+ + I+ G P+ G
Sbjct: 5 IYTMKKVRKAHGDKVILDDVTLSFYPGAKIGVVGPNGAGKSSVLRIMAGLDKPNNGDAFL 64
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE-MSEDEMNAALE 121
+ VG + Q L + KT R + E + DI+ ++ D + ++AE M+ D + +E
Sbjct: 65 ATGATVGILQQEPPLNEDKTVRGNVEEG---MGDIKIKL-DRFNEVAELMATDYTDELME 120
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+G LQEELD++D + +DA++E+ L P D+ V LSGG+R +
Sbjct: 121 EMGRLQEELDHADAWDLDAQLEQAMDALRCPPA-DEPVTNLSGGERRRVALCKLLLSKPD 179
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD E + WL+ +L +Y A + ++HD F+D V I + Y
Sbjct: 180 LLLLDEPTNHLDAESVQWLEQHLASYPGAILAVTHDRYFLDNVAEWILELDRGRAYPYEG 239
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y+ + EKKA+ ++ Q + AKL+ + + A V + +A+ + K
Sbjct: 240 NYS----TYLEKKAERLAV---QGRKDAKLQKRLTEELAWVRSGAKARQAKSKARLQRYE 292
Query: 302 ETISEKPKPH-FDFKFSRKP-----SRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAF 354
E +E K DF+ + P +V E L GY+ L +++ + +
Sbjct: 293 EMAAEAEKTRKLDFEEIQIPVGPRLGNVVVEVDHLDKGYDGRALIKDLSFSLPRNGIVGV 352
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWD--EY 411
IG NG+GK+TL K+++GL G V+ G ++Y +Q +KTV + + D +Y
Sbjct: 353 IGPNGVGKTTLFKTIVGLETPDSGSVKVGETVKLSYVDQARAGIDPRKTVWEVVSDGLDY 412
Query: 412 PSWNQAEL--RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
Q E+ R ++ G + VLSGGE+ +L A + N+++LDEPTN
Sbjct: 413 IQVGQTEVPSRAYVSAFGFKGPDQQKPAGVLSGGERNRLNLALTLKQGGNLILLDEPTND 472
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
LDV+ L+ AL+ +PG +++SH+ F + + ++ E
Sbjct: 473 LDVETLGSLENALLNFPGCAVVISHDRWFLDRTCTHILAWE 513
sp|P45535|YHES_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YHES
>gi|606286|gb|AAA58149.1| (U18997) ORF_o637 [Escherichia
coli] >gi|1789751 (AE000411) putative ATP-binding
component of a transport system [Escherichia coli]
Length = 637
Score = 205 bits (516), Expect = 8e-52
Identities = 131/497 (26%), Positives = 237/497 (47%), Gaps = 15/497 (3%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
G R + ++ + + G+ +G VG NG GKST + ++ + D G + ++ +++Q
Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQ 71
Query: 74 HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNS 133
T A +Y+ D + + ++ + +E A+ + +LD
Sbjct: 72 E--------TPALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATI---HGKLDAI 120
Query: 134 DFYLIDAKVEETARGLGLT-PLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYL 192
D + I ++ GLG + L++ V++ SGG R + TN+L
Sbjct: 121 DAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHL 180
Query: 193 DEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEE 252
D + ++WL+ +LK+Y+ ILISHD F+D +V+ I H+ + Y+ Y+ FE
Sbjct: 181 DLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEVQRAT 240
Query: 253 KKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHF 312
+ AQ ++++ +Q A L+ +I R +A + QA++R K L +ME++ F
Sbjct: 241 RLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFRF 300
Query: 313 DFKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMG 371
F+ + + + + GY + + I L + G +I +G NG GKSTL+K L G
Sbjct: 301 SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360
Query: 372 LIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDEYPSWNQAELRGALARVGLT 429
+ + GE+ + Y+ Q + ++ + L P + +LR L G
Sbjct: 361 ELAPVSGEIGLAKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQ 420
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTV 489
++ SGGE+A+L A ++ N+L+LDEPTNHLD+D ++ L ALIE+ G +
Sbjct: 421 GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIEFEGAL 480
Query: 490 LMVSHEPEFYEGLVSDV 506
++VSH+ D+
Sbjct: 481 VVVSHDRHLLRSTTDDL 497
Score = 83.5 bits (203), Expect = 4e-15
Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 32/198 (16%)
Query: 346 VESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE---IKNPSQKT 402
+ GQK+ +G NG GKSTLL L I + G +A+ QE + + +
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEY 83
Query: 403 VLDD----------------------------LWDEYPSWN-QAELRGALARVGLTAKQI 433
V+D D +W+ ++ L +G + +Q+
Sbjct: 84 VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQL 143
Query: 434 ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVS 493
E V SGG + +L A+ + S++L+LDEPTNHLD+DA L++ L Y GT++++S
Sbjct: 144 ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILIS 203
Query: 494 HEPEFYEGLVSDVINCEE 511
H+ +F + +V +I+ E+
Sbjct: 204 HDRDFLDPIVDKIIHIEQ 221
Score = 77.6 bits (188), Expect = 2e-13
Identities = 65/297 (21%), Positives = 120/297 (39%), Gaps = 40/297 (13%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L ++ +S G+GDR I + + L+ G IG +G NG GKST + ++ G L P G++
Sbjct: 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+K ++GY QH + +YL E+ I +A ++ E+
Sbjct: 372 AKGIKLGYFAQHQL---------------EYLRADESPI----QHLARLAPQELEQ---- 408
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+L++ L F D EET R SGG++ +
Sbjct: 409 --KLRDYLGGFGFQ-GDKVTEETRR--------------FSGGEKARLVLALIVWQRPNL 451
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
TN+LD + L L +E A +++SHD + + +Y VH + +
Sbjct: 452 LLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGD 511
Query: 243 YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKME 299
++++ + + Q A + +K+ Q + K++A++E
Sbjct: 512 LEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIARLE 568
emb|CAB59456.1| (AL132644) putative ABC transporter ATP binding protein.
[Streptomyces coelicolor A3(2)]
Length = 532
Score = 204 bits (514), Expect = 1e-51
Identities = 141/497 (28%), Positives = 238/497 (47%), Gaps = 11/497 (2%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
G R + E +FR+ KG+ IG VG NG GK+T ++ G P G V ++ VGY+ Q
Sbjct: 12 GARVLIESATFRVAKGDRIGLVGRNGAGKTTLTKVLAGEGQPAAGAV--TRSGEVGYLPQ 69
Query: 74 HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNS 133
G + + L + ++ D ++A AL+ + E
Sbjct: 70 DPRTGDLDVLARDRILSARGLDTLIRKMRDNEQRIANGQGATREKALKQYERQETEFLTK 129
Query: 134 DFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYL 192
Y +A+ A L L +L + + LSGGQR + TN+L
Sbjct: 130 GGYAAEAEAATIAAALNLPDRVLGQPLHTLSGGQRRRIELARILFSDADTLLLDEPTNHL 189
Query: 193 DEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHG--LGITRYSMGYAEFERVF 250
D + I+WL++YLK Y FI+ISHDV ++ VVN ++++ I Y+MG+ +++
Sbjct: 190 DADSIIWLRDYLKTYRGGFIVISHDVDLVETVVNKVFYLDANRSQIDVYNMGWRLYQQQR 249
Query: 251 E----EKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISE 306
E +K + ++ A ++ A+ VA A+ +K LA +E +
Sbjct: 250 EADEKRRKRERQNAEKKASALHSQADKMRAKATKTVAAQNMARRADKLLAGLEAERKSDK 309
Query: 307 KPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLL 366
K F + L E G E + ++++L ++ G ++ +G NG GK+TLL
Sbjct: 310 VAKLRFPEPAPCGRTPLTAEGLSKSYGSLE-IFTDVDLAIDKGSRVVILGLNGAGKTTLL 368
Query: 367 KSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWDEYPSWNQAELRGALAR 425
+ L G+ GEV +G+ + YY QE + ++TVL+++ P + ++R L
Sbjct: 369 RLLGGVEKPDTGEVIEGHGLKLGYYAQEHETLDPERTVLENMRSANPDLDLVDVRKTLGS 428
Query: 426 VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY 485
+ ++ VLSGGE+ +L A L+ + +N+L+LDEPTN+LD ++EE+ AL Y
Sbjct: 429 FLFSGDDVDKPAGVLSGGEKTRLALATLVVSSANVLLLDEPTNNLDPASREEILGALRTY 488
Query: 486 PGTVLMVSHEPEFYEGL 502
G V++V+H+ E L
Sbjct: 489 KGAVVLVTHDEGAVEAL 505
Score = 64.0 bits (153), Expect = 3e-09
Identities = 52/213 (24%), Positives = 88/213 (40%), Gaps = 47/213 (22%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYY------ 391
L +V G +I +G NG GK+TL K L G G V + ++ Y
Sbjct: 16 LIESATFRVAKGDRIGLVGRNGAGKTTLTKVLAGEGQPAAGAVTRSG--EVGYLPQDPRT 73
Query: 392 ---------------------------EQEIKNPSQKTVLDDLWDEYPSWN--------- 415
EQ I N Q + +Y
Sbjct: 74 GDLDVLARDRILSARGLDTLIRKMRDNEQRIAN-GQGATREKALKQYERQETEFLTKGGY 132
Query: 416 --QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
+AE A + L + + ++ LSGG++ ++ A+++ ++++ L+LDEPTNHLD D
Sbjct: 133 AAEAEAATIAAALNLPDRVLGQPLHTLSGGQRRRIELARILFSDADTLLLDEPTNHLDAD 192
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
+ L+ L Y G +++SH+ + E +V+ V
Sbjct: 193 SIIWLRDYLKTYRGGFIVISHDVDLVETVVNKV 225
Score = 61.7 bits (147), Expect = 1e-08
Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 43/215 (20%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L + LS +G IF DV + KG + +G NG GK+T + ++ G PD G+VI
Sbjct: 326 LTAEGLSKSYGSLEIFTDVDLAIDKGSRVVILGLNGAGKTTLLRLLGGVEKPDTGEVIEG 385
Query: 64 KKHRVGYMDQ-HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
++GY Q H L +T E + A
Sbjct: 386 HGLKLGYYAQEHETLDPERTVLENMRSA-------------------------------- 413
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
N D L+D + + L +DK LSGG++T+
Sbjct: 414 ---------NPDLDLVDVR-KTLGSFLFSGDDVDKPAGVLSGGEKTRLALATLVVSSANV 463
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHD 217
TN LD + L+ Y+ A +L++HD
Sbjct: 464 LLLDEPTNNLDPASREEILGALRTYKGAVVLVTHD 498
gi|2688680 (AE001174) ABC transporter, ATP-binding protein [Borrelia
burgdorferi]
Length = 565
Score = 204 bits (513), Expect = 2e-51
Identities = 138/510 (27%), Positives = 248/510 (48%), Gaps = 11/510 (2%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ V NL FG+R +F+DV+ + G G +GANG GKSTF+ ++ G + +G++
Sbjct: 23 LITVSNLEVAFGERVLFKDVNIKFSPGNCYGIIGANGAGKSTFLKVLGGMIEASKGEISI 82
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
K RV ++Q G + + + L+ ++ + ++ Y K+ ED + A
Sbjct: 83 PKNQRVAALEQDQFAYDGYKVIDTVIMGHKRLYSVQKEKDEIYSKLDFTDEDGIRA---- 138
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDV-AELSGGQRTKXXXXXXXXXXXX 181
GEL+ E Y ++ +GLG+ + ++ ++ G + +
Sbjct: 139 -GELEAEFSELGGYEAESDAAVLLKGLGIDEAIHNNLMGDVEGALKVRVLLAQALFGDPD 197
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN LD + I WL+ +L N+EN I++SHD F+++V I + I Y
Sbjct: 198 VLLLDEPTNNLDLQSIKWLEEFLINFENTVIVVSHDRHFLNQVCTHIVDIDYGKIQVYLG 257
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y + + QL+ + A+LK FI R +N + S QA +R+K + K+++
Sbjct: 258 NYDFWYETSQILNKQLKDAKKRSEDKIAELKTFIQRFSSNASKSKQATSRKKLIEKIKVE 317
Query: 302 ETISEKPK-PHFDFKFSRKPSRLVFEAKDLVIGYNEPLS-SEINLKVESGQKIAFIGSNG 359
+ K P+ +FK R+ + V K+L+ + L ++ ++ VE QKI F+G N
Sbjct: 318 DLKPSSRKFPYVNFKSERELGKNVLTIKNLIKEFEGNLILNKFSIIVEPQQKIVFLG-NP 376
Query: 360 IGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDEYPSWNQA 417
+ + L + + G E G+ + +Y+ ++ ++D L ++
Sbjct: 377 MFATFLFDIITNEDRNYKGHYEWGSTVNFSYFNKDNGKYFDLDLNLVDWLRQYSKEQDET 436
Query: 418 ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+RG L R+ + + +V VLSGGE+ + AK M + +N+LILD+PTNHLD++A
Sbjct: 437 YIRGFLGRMLFSQDEALKKVNVLSGGEKVRCMLAKAMLSGANVLILDQPTNHLDLEAITS 496
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
L L E+ G VL SH+ +F + + + +I
Sbjct: 497 LNSGLKEFKGVVLFTSHDHQFIDTVANRII 526
Score = 67.5 bits (162), Expect = 2e-10
Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++N+K G IG+NG GKST LK L G+I + GE+ Q +A EQ+
Sbjct: 38 LFKDVNIKFSPGNCYGIIGANGAGKSTFLKVLGGMIEASKGEISIPKNQRVAALEQDQFA 97
Query: 398 PSQKTVLD-----------------------DLWDEYPSWNQAELRGALARVGLTAKQIE 434
V+D D DE EL + +G + +
Sbjct: 98 YDGYKVIDTVIMGHKRLYSVQKEKDEIYSKLDFTDE-DGIRAGELEAEFSELGGYEAESD 156
Query: 435 SRVYV----------------LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
+ V + + G + ++ A+ + + ++L+LDEPTN+LD+ + + L
Sbjct: 157 AAVLLKGLGIDEAIHNNLMGDVEGALKVRVLLAQALFGDPDVLLLDEPTNNLDLQSIKWL 216
Query: 479 KRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ LI + TV++VSH+ F + + +++ +
Sbjct: 217 EEFLINFENTVIVVSHDRHFLNQVCTHIVDID 248
emb|CAB43155.1| (AL049913) putative ABC transporter ATP-binding protein
[Mycobacterium leprae]
Length = 556
Score = 203 bits (511), Expect = 3e-51
Identities = 149/520 (28%), Positives = 251/520 (47%), Gaps = 23/520 (4%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I +K + GD+ I +DV+ G IG VG NG GKS+ + I+ G P+ G
Sbjct: 5 IYTMKKVRKAHGDKVILDDVTLNFFPGAKIGVVGPNGAGKSSVLRIMAGMDKPNNGDAFL 64
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE-MSEDEMNAALE 121
+ VG + Q L + KT R + E L DI+ ++ D + ++AE M+ D + +E
Sbjct: 65 ATGASVGILQQEPPLNEEKTVRGNVEEG---LGDIKIKL-DRFSEVAELMATDSSSELME 120
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+G LQEELD++D + +D+++E+ L P D+ V LSGG+R +
Sbjct: 121 EMGRLQEELDHADAWDLDSQLEQAMDVLRCPPP-DEPVTNLSGGERRRVALCKLLLSKPD 179
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD E + WL+ +L Y A + ++HD F+D V I + Y
Sbjct: 180 LLLLDEPTNHLDAESVQWLEQHLAGYAGAVLAVTHDRYFLDNVAEWILELDRGRAYPYEG 239
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y+ + E+K +L + Q +L D +A ++ A + QAK++ + L + E +
Sbjct: 240 NYSTY---LEKKAERLTTQGRKDAKLQKRLTDELAWVRSG-AKARQAKSKAR-LQRYEEM 294
Query: 302 ETISEKPKPHFDFKFSRKP-----SRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFI 355
+EK + FDF+ + P +V E + L GY L +++ + + I
Sbjct: 295 AAEAEKNRK-FDFEEIQIPVGPRLGNMVVEVEHLDKGYGGRTLIKDLSFTLPRNGIVGII 353
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ-----EIKNPSQKTVLDDLWDE 410
G NG+GK+TL K+++GL G V+ G ++Y +Q + K + V D L
Sbjct: 354 GPNGVGKTTLFKTIVGLEQPDGGAVKIGETVKLSYVDQTRAGIDPKKIVWEVVSDGLDHI 413
Query: 411 YPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
+ R ++ G + VLSGGE+ +L A + N+++LDEPTN L
Sbjct: 414 QVGQTEVSSRAYVSAFGFKGPDQQKLAGVLSGGERNRLNLALTLKQGGNLILLDEPTNDL 473
Query: 471 DVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
DV+ L+ AL+ +PG +++SH+ F + + ++ E
Sbjct: 474 DVETLGSLENALVNFPGCAVVISHDRWFLDRTCTHILAWE 513
sp|P44808|YHES_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI0658
>gi|1074470|pir||C64156 hypothetical protein HI0658 -
Haemophilus influenzae (strain Rd KW20) >gi|1573657
(U32748) ABC transporter, ATP-binding protein
[Haemophilus influenzae Rd]
Length = 638
Score = 199 bits (500), Expect = 6e-50
Identities = 138/506 (27%), Positives = 237/506 (46%), Gaps = 19/506 (3%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHR 67
NLS G + E+ S + + +G VG NG GKS+ ++ L+P+ G+V + R
Sbjct: 6 NLSLKRGQTELLENASATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVNYPANWR 65
Query: 68 VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQ 127
V +++Q T A Y+ + + K+ +E A + +
Sbjct: 66 VSWVNQE--------TPALDISAIDYVIQGDREYCRLQQKLERANERNDGNA---IARIH 114
Query: 128 EELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXXXXXXXXX 186
+L+ D + I ++ GLG + + V SGG R +
Sbjct: 115 GQLETLDAWTIQSRAASLLHGLGFSQEETIQPVKAFSGGWRMRLNLAQALLCPSDLLLLD 174
Query: 187 XXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEF 246
TN+LD + ++WL+ +L Y+ +LISHD F+D +V I H+ + Y+ Y+ F
Sbjct: 175 EPTNHLDLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIENQKLNEYTGDYSSF 234
Query: 247 ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISE 306
E K AQ +++ Q + + L+ +I R KA + QA++R K L +ME++
Sbjct: 235 EVQRATKLAQQTAMYRQQQQKISHLQKYIDRFKAKATKAKQAQSRMKALERMELIAPAYV 294
Query: 307 KPKPHFDFKFSRK-PSRLV-FEAKDLVIGYNE---PLSSEINLKVESGQKIAFIGSNGIG 361
F+F+ + P+ LV E G E + S+I L + G +I +G NG G
Sbjct: 295 DNPFTFEFRPPQSLPNPLVMIEQASAGYGIGESAVEILSKIKLNLVPGSRIGLLGKNGAG 354
Query: 362 KSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQKTVLDDLWDEYPSWNQAEL 419
KSTL+K L G + +L G V+ + Y+ Q + + ++ L + P + ++
Sbjct: 355 KSTLIKLLAGELTALSGTVQLAKGVQLGYFAQHQLDTLRADESALWHMQKLAPEQTEQQV 414
Query: 420 RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK 479
R L ++ V SGGE+A+L A ++ N+L+LDEPTNHLD+D ++ L
Sbjct: 415 RDYLGSFAFHGDKVNQAVKSFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 474
Query: 480 RALIEYPGTVLMVSHEPEFYEGLVSD 505
AL++Y G++++VSH+ V +
Sbjct: 475 EALVDYEGSLVVVSHDRHLLRNTVEE 500
Score = 76.1 bits (184), Expect = 6e-13
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
++F L G E L + + + QK+ +G NG GKS+L L + GEV
Sbjct: 2 IIFSNLSLKRGQTELLENA-SATINPKQKVGLVGKNGCGKSSLFALLKKELMPEGGEVNY 60
Query: 383 GNFQDIAYYEQEIK----NPSQKTVLDD-----LWDEYPSWNQAELRGALARVG-----L 428
+++ QE + + D L + N+ A+AR+ L
Sbjct: 61 PANWRVSWVNQETPALDISAIDYVIQGDREYCRLQQKLERANERNDGNAIARIHGQLETL 120
Query: 429 TAKQIESR------------------VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
A I+SR V SGG + +L A+ + S++L+LDEPTNHL
Sbjct: 121 DAWTIQSRAASLLHGLGFSQEETIQPVKAFSGGWRMRLNLAQALLCPSDLLLLDEPTNHL 180
Query: 471 DVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
D+DA L+R L++Y GT++++SH+ +F + +V+ +++ E
Sbjct: 181 DLDAVIWLERWLVQYQGTLVLISHDRDFLDPIVTKILHIE 220
sp|Q57242|UUP1_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-1 >gi|1074724|pir||E64170
hypothetical protein HI1300 - Haemophilus influenzae
(strain Rd KW20) >gi|1574757 (U32809) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 647
Score = 197 bits (495), Expect = 2e-49
Identities = 139/512 (27%), Positives = 249/512 (48%), Gaps = 13/512 (2%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+++++ N F D + + + E + VG NG GKST + II G ++ D+GK+
Sbjct: 1 MALISLTNGYLSFSDAPLLDHAELHIEPNECVCLVGRNGAGKSTLLKIIAGDVLMDDGKI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
+ K V ++Q + +AE +L D+ + + +++ E D++ + L
Sbjct: 61 QYEKDLVVSRLEQDPPRNAQGNIFDYVAEGVGHLTDLLKEYHQISVQLEENYSDQILSQL 120
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
E V Q +L+++D + + K+ E LGL P + ++ LSGG K
Sbjct: 121 EQV---QAKLEHADGWRFENKINEVLLKLGLNP--NTKLSALSGGWLRKAALARALVCDP 175
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD E I WL+N+L +++ + + ISHD F+ ++ I + + Y
Sbjct: 176 DVLLLDEPTNHLDVEAIEWLENFLLDFQGSIVFISHDRSFIRKMATRIVDLDRGQLVSYP 235
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVA-TSGQAKAREKKLAKME 299
Y + +E+ ++E+L N ++ ++ R+ T + + R K+ + E
Sbjct: 236 GNY-DLYLTTKEENLRVEALQNELFDKRLAQEEVWIRQGIKARRTRNEGRVRALKVMREE 294
Query: 300 IVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSN 358
+ S + ++VFE +D+ + L + + + G KIA +G N
Sbjct: 295 RRQRRDVMGTAKLQLDTSSRSGKIVFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPN 354
Query: 359 GIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWDEYPSWN-- 415
G GK+T +K L+G I G++ G +IAY++Q + +KTV+D++ D
Sbjct: 355 GCGKTTFIKLLLGEIQPTSGKIRCGTKLEIAYFDQYRADLDPEKTVMDNVADGKQDIEIN 414
Query: 416 --QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
+ + G L K+ + V LSGGE+ +L AKL+ +N+LILDEPTN LDV+
Sbjct: 415 GVKRHVLGYLQDFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVE 474
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
E L+ L +Y GT+L+VSH+ +F + ++
Sbjct: 475 TLELLEEILTDYQGTLLIVSHDRQFIDNTATE 506
Score = 82.7 bits (201), Expect = 7e-15
Identities = 77/301 (25%), Positives = 127/301 (41%), Gaps = 49/301 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ ++++S+ + + +D S +L+G+ I VG NG GK+TF+ ++ G + P GK+
Sbjct: 319 VFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRC 378
Query: 63 SKKHRVGYMDQH-AVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
K + Y DQ+ A L KT + +A+ Q + E+N
Sbjct: 379 GTKLEIAYFDQYRADLDPEKTVMDNVADGKQDI--------------------EINGVKR 418
Query: 122 NV-GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+V G LQ+ +L K +TP V LSGG+R +
Sbjct: 419 HVLGYLQD-------FLFPPK-------RAMTP-----VKALSGGERNRLLLAKLLLKPN 459
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITRY 239
TN LD E + L+ L +Y+ +++SHD F+D Y G G + +Y
Sbjct: 460 NLLILDEPTNDLDVETLELLEEILTDYQGTLLIVSHDRQFIDNTATECYLFEGKGHLNKY 519
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKAN-VATSGQAKAREKKLAKM 298
G+ F+ K+ Q + V EQAK K K+ + V +K + KL+
Sbjct: 520 VGGF------FDAKQQQANFWASKAVEEQAKAKKSEPLKEESAVKNDRTSKPKSVKLSYK 573
Query: 299 E 299
E
Sbjct: 574 E 574
Score = 81.1 bits (197), Expect = 2e-14
Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 43/214 (20%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK 396
PL L +E + + +G NG GKSTLLK + G + DG+++ ++ EQ+
Sbjct: 17 PLLDHAELHIEPNECVCLVGRNGAGKSTLLKIIAGDVLMDDGKIQYEKDLVVSRLEQDPP 76
Query: 397 NPSQKTVLD----------DLWDEYPSWN------------------QAELRGA------ 422
+Q + D DL EY + QA+L A
Sbjct: 77 RNAQGNIFDYVAEGVGHLTDLLKEYHQISVQLEENYSDQILSQLEQVQAKLEHADGWRFE 136
Query: 423 ------LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
L ++GL +++ LSGG K A+ + + ++L+LDEPTNHLDV+A E
Sbjct: 137 NKINEVLLKLGLNPN---TKLSALSGGWLRKAALARALVCDPDVLLLDEPTNHLDVEAIE 193
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L+++ G+++ +SH+ F + + +++ +
Sbjct: 194 WLENFLLDFQGSIVFISHDRSFIRKMATRIVDLD 227
emb|CAA70589| (Y09439) UUP protein [Escherichia coli]
Length = 614
Score = 193 bits (485), Expect = 3e-48
Identities = 140/513 (27%), Positives = 246/513 (47%), Gaps = 15/513 (2%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MS++++ F D + ++ + E + VG NG GKST M I+ D+G++
Sbjct: 1 MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQIND-TYMKMAEMSEDEMNAA 119
I+ + V + Q + + +AE + + + +D + + M + SE +N
Sbjct: 61 IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLN-- 118
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXX 179
+ ++QE+LD+ + + ++ ++ E LGL P + ++ LSGG K
Sbjct: 119 --ELAKVQEQLDHHNLWQLENRINEVLAQLGLDP--NVALSSLSGGWLRKAALGRALVSN 174
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD E I WL+ +LK + I ISHD F+ + I + + Y
Sbjct: 175 PRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTY 234
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVA-TSGQAKAREKKLAKM 298
Y ++ + +E+ ++E L NA+ + ++ R+ T + + R K +
Sbjct: 235 PGNYDQY-LLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRR 293
Query: 299 EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGS 357
E E + + + ++VFE +D+ N + L + + +V G KIA IG
Sbjct: 294 ERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGP 353
Query: 358 NGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE-IKNPSQKTVLDDL----WDEYP 412
NG GK+TLLK ++G + + G + G ++AY++Q + KTV+D+L +
Sbjct: 354 NGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMV 413
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
+ + G L K+ + V LSGGE+ +L A+L SN+LILDEPTN LDV
Sbjct: 414 NGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
+ E L+ + Y GTVL+VSH+ +F + V++
Sbjct: 474 ETLELLEELIDSYQGTVLLVSHDRQFVDNTVTE 506
Score = 67.1 bits (161), Expect = 3e-10
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 43/214 (20%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE-- 394
PL L +E +++ +G NG GKSTL+K L DG + +A +Q+
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPP 76
Query: 395 --------------------------------IKNPSQKTV-----LDDLWDEYPSWN-Q 416
+ +PS+K + + + D + W +
Sbjct: 77 RNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLE 136
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
+ LA++GL S LSGG K + + + +L+LDEPTNHLD++ +
Sbjct: 137 NRINEVLAQLGLDPNVALSS---LSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETID 193
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L + GT++ +SH+ F + + +++ +
Sbjct: 194 WLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLD 227
sp|P43672|UUP_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN UUP >gi|1787182 (AE000197)
putative ATP-binding component of a transport system
[Escherichia coli] >gi|4062519|dbj|BAA35707| (D90733)
Hypothetical protein HI1300 [Escherichia coli]
Length = 635
Score = 193 bits (485), Expect = 3e-48
Identities = 140/513 (27%), Positives = 246/513 (47%), Gaps = 15/513 (2%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MS++++ F D + ++ + E + VG NG GKST M I+ D+G++
Sbjct: 1 MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQIND-TYMKMAEMSEDEMNAA 119
I+ + V + Q + + +AE + + + +D + + M + SE +N
Sbjct: 61 IYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLN-- 118
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXX 179
+ ++QE+LD+ + + ++ ++ E LGL P + ++ LSGG K
Sbjct: 119 --ELAKVQEQLDHHNLWQLENRINEVLAQLGLDP--NVALSSLSGGWLRKAALGRALVSN 174
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD E I WL+ +LK + I ISHD F+ + I + + Y
Sbjct: 175 PRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLVTY 234
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVA-TSGQAKAREKKLAKM 298
Y ++ + +E+ ++E L NA+ + ++ R+ T + + R K +
Sbjct: 235 PGNYDQY-LLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKAMRR 293
Query: 299 EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGS 357
E E + + + ++VFE +D+ N + L + + +V G KIA IG
Sbjct: 294 ERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGP 353
Query: 358 NGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE-IKNPSQKTVLDDL----WDEYP 412
NG GK+TLLK ++G + + G + G ++AY++Q + KTV+D+L +
Sbjct: 354 NGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRAELDPDKTVMDNLAEGKQEVMV 413
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
+ + G L K+ + V LSGGE+ +L A+L SN+LILDEPTN LDV
Sbjct: 414 NGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
+ E L+ + Y GTVL+VSH+ +F + V++
Sbjct: 474 ETLELLEELIDSYQGTVLLVSHDRQFVDNTVTE 506
Score = 67.1 bits (161), Expect = 3e-10
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 43/214 (20%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE-- 394
PL L +E +++ +G NG GKSTL+K L DG + +A +Q+
Sbjct: 17 PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLIVARLQQDPP 76
Query: 395 --------------------------------IKNPSQKTV-----LDDLWDEYPSWN-Q 416
+ +PS+K + + + D + W +
Sbjct: 77 RNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLE 136
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
+ LA++GL S LSGG K + + + +L+LDEPTNHLD++ +
Sbjct: 137 NRINEVLAQLGLDPNVALSS---LSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETID 193
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L + GT++ +SH+ F + + +++ +
Sbjct: 194 WLEGFLKTFNGTIIFISHDRSFIRNMATRIVDLD 227
gi|3323151 (AE001254) ABC transporter, ATP-binding protein [Treponema
pallidum]
Length = 554
Score = 188 bits (473), Expect = 8e-47
Identities = 137/516 (26%), Positives = 240/516 (45%), Gaps = 16/516 (3%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ V +S F D+ +F+ V + + G G +GANG GKSTF+ +++G L +G +
Sbjct: 4 MITVTGMSVQFSDKPLFKGVDLKFVAGNCYGVIGANGAGKSTFLKVLSGELEHHQGSIAI 63
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ RV + Q T ++ + L+ + + Y K D + A+
Sbjct: 64 ASGARVAVLRQDHFSFDQHTVKDTVCMGHPALYRVMKEREALYAKSDFSEADGLKAS--- 120
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLL-DKDVAELSGGQRTKXXXXXXXXXXXX 181
EL+ E + + + + +E+ GLG+ D+ + EL Q+ +
Sbjct: 121 --ELEGEFSDLNGWEAENCIEQMLSGLGVDEAHHDRMMCELDESQKVRVLLAQALFGNPD 178
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN LD I WL+ +L + N I++SHD F++ V I + I YS
Sbjct: 179 VLLLDEPTNGLDLYSIAWLEEFLIEFPNTVIVVSHDRHFLNSVCTHICDIDYGKIRLYSG 238
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y + ++ + + Q++ + + L++FI R +N A S QA +R+K K+ +
Sbjct: 239 NYDFWYQMSQIMQRQVKDQQKKREEKMKDLREFILRFASNAAKSRQATSRKKIYDKLVLE 298
Query: 302 ET-ISEKPKPHFDFKFSRKPSRLV-------FEAKDLVIGYNEPLSSEINLKVESGQKIA 353
E ++ + P+ FK R+ V + A+D + G + L ++++ V KIA
Sbjct: 299 EIEVTGRKFPYVHFKPRREIGNHVLSCDGLRYAAEDRMQGGSCELFTDMSFTVGRTDKIA 358
Query: 354 FIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDEY 411
F+G K+ L L G + G G + Y ++ ++ D L
Sbjct: 359 FVGQEHRAKTILFDILAGEKQAHAGSFRWGQTVSVGYMGKDTARYFDCDLSITDWLRQFS 418
Query: 412 PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
++ +RG L R+ T + V VLSGGE+ + +KLM + SN+LILDEPTNHLD
Sbjct: 419 DDQDETYVRGFLGRMLFTGEDSLKSVRVLSGGEKVRCMLSKLMLSGSNVLILDEPTNHLD 478
Query: 472 VDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
++A L AL+++PG +L SH+ EF + + ++
Sbjct: 479 LEAIASLNEALVQFPGVILFNSHDHEFVSSVANRIV 514
Score = 69.5 bits (167), Expect = 6e-11
Identities = 57/220 (25%), Positives = 98/220 (43%), Gaps = 38/220 (17%)
Query: 335 NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE 394
++PL ++LK +G IG+NG GKST LK L G + G + + +A Q+
Sbjct: 16 DKPLFKGVDLKFVAGNCYGVIGANGAGKSTFLKVLSGELEHHQGSIAIASGARVAVLRQD 75
Query: 395 IKNPSQKTVLDDLWDEYPS-WNQAELRGALARV-------GLTAKQIESRVYVLSGGE-- 444
+ Q TV D + +P+ + + R AL GL A ++E L+G E
Sbjct: 76 HFSFDQHTVKDTVCMGHPALYRVMKEREALYAKSDFSEADGLKASELEGEFSDLNGWEAE 135
Query: 445 ----------------------------QAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
+ ++ A+ + ++L+LDEPTN LD+ +
Sbjct: 136 NCIEQMLSGLGVDEAHHDRMMCELDESQKVRVLLAQALFGNPDVLLLDEPTNGLDLYSIA 195
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTRI 516
L+ LIE+P TV++VSH+ F + + + + + R+
Sbjct: 196 WLEEFLIEFPNTVIVVSHDRHFLNSVCTHICDIDYGKIRL 235
gb|AAA19072.1| (U10414) Contains similarity to Pfam domain: PF00005 (ABC_tran),
Score=245.2, E-value=3e-70, N=2 [Caenorhabditis elegans]
Length = 712
Score = 187 bits (471), Expect = 1e-46
Identities = 139/508 (27%), Positives = 231/508 (45%), Gaps = 21/508 (4%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+ ++++ G + + + G G VG NG GK+T + +I+ + +
Sbjct: 179 IKLESVDISIGTKQLLSCADVTMAFGRRYGLVGRNGIGKTTLLKMISSQQLKIPAGISML 238
Query: 64 KKHRVGYMDQHAVLGK---GKTTREALAEAFQYLFDIEAQINDTYMKMAEMSE--DEMNA 118
+ D VL T R+ L + + L +++IN + AE ++ DE++
Sbjct: 239 SVEQEVEGDDTLVLDAVLMSDTKRQTLLDREKTL---QSRINKDNINDAEKTKWNDELSK 295
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDK-DVAELSGGQRTKXXXXXXXX 177
+ LQ LD + A+ GLG TP K E SGG R +
Sbjct: 296 LYIEMEALQ--LDKAP-----ARASSLLYGLGFTPDEQKRPTKEFSGGWRMRVALARALF 348
Query: 178 XXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGIT 237
TN LD + WL+ +L+ +E + +SHD F++E+ I H+H +
Sbjct: 349 VKPDLLLLDEPTNMLDMRAVYWLEGHLQGWEGTILTVSHDRKFLNEICTDIVHLHTRRLD 408
Query: 238 RYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAK 297
Y Y +FE+ +EK Q + + +Q + ++FI + + N + ++R K L K
Sbjct: 409 HYKGNYDQFEKTMKEKLTQQQREYESQQQLRQHTQEFIDKFRYNAKRAPMVQSRIKMLEK 468
Query: 298 MEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAF 354
+ ++ + + HF F S V + ++ YNE L ++NL + +I
Sbjct: 469 LPVLLPVELESDIHFKFPECEVLSNPVLQLDEVSFRYNEDSPYLFRKLNLGTHANSRICI 528
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQKTVLDDLWDEYP 412
+G NG GK+TLLK L+ + G IAY+ Q + + + ++ L +P
Sbjct: 529 VGENGAGKTTLLKLLLDDLQPSVGLRNVNRRIRIAYFTQHHVDQLDMETSAIEVLMKNHP 588
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
Q + R AL R GL V LSGG++++L FA L + N LILDEPTNHLDV
Sbjct: 589 GKTQEDYRAALGRFGLAGDMALQSVETLSGGQKSRLAFANLALMQPNYLILDEPTNHLDV 648
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYE 500
+ E L +AL + G V++VSH+ + E
Sbjct: 649 ETVEALGKALNVFNGGVVLVSHDEQLIE 676
Score = 69.9 bits (168), Expect = 5e-11
Identities = 74/297 (24%), Positives = 129/297 (42%), Gaps = 49/297 (16%)
Query: 257 LESLHNAQVAEQAKLKDFIARKKANVATSGQAKAR-----EKKLAKMEIVETISEKPKPH 311
L+S+ Q + D KA + +A+AR E+K K E T S+ P
Sbjct: 109 LQSIWKVQTRDTPTTVDKKKLAKAEDRAAAKAEARADAPVERKKKKNEPSATASQAPIRD 168
Query: 312 FDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMG 371
+ + + E+ D+ IG + LS ++ + G++ +G NGIGK+TLLK +
Sbjct: 169 SGARGANSKD-IKLESVDISIGTKQLLSCA-DVTMAFGRRYGLVGRNGIGKTTLLKMISS 226
Query: 372 L---IP------SLDGEVEKGNF-------------QDIAYYEQEIKNPSQKTVLDDLWD 409
IP S++ EVE + Q + E+ +++ K ++D
Sbjct: 227 QQLKIPAGISMLSVEQEVEGDDTLVLDAVLMSDTKRQTLLDREKTLQSRINKDNINDA-- 284
Query: 410 EYPSWNQ------------------AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFA 451
E WN A L +G T + + SGG + ++ A
Sbjct: 285 EKTKWNDELSKLYIEMEALQLDKAPARASSLLYGLGFTPDEQKRPTKEFSGGWRMRVALA 344
Query: 452 KLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVIN 508
+ + + ++L+LDEPTN LD+ A L+ L + GT+L VSH+ +F + +D+++
Sbjct: 345 RALFVKPDLLLLDEPTNMLDMRAVYWLEGHLQGWEGTILTVSHDRKFLNEICTDIVH 401
gb|AAD18176| (AE001587) ABC Transporter Protein ATPase [Chlamydia pneumoniae]
Length = 530
Score = 187 bits (470), Expect = 2e-46
Identities = 142/514 (27%), Positives = 248/514 (47%), Gaps = 24/514 (4%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MSI+ + + G R +F+DVS G G G NG GKST + II G + P G +
Sbjct: 1 MSIV-LDKIGKSLGTRILFDDVSVVFNPGNCYGLTGPNGAGKSTLLKIIMGMIEPTRGSI 59
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
KK VG + Q+ T + + L++ + ++ Y+ ++ +A
Sbjct: 60 SLPKK--VGILRQNIDSFHDTTVLDCVIMGNTRLWEALQRRDNLYL------QEFTDAIG 111
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGL-TPLLDKDVAELSGGQRTKXXXXXXXXXX 179
+GE++E + + Y D++ EE G+G+ + DK +A + + +
Sbjct: 112 MELGEIEEIIGEENGYRADSEAEELLTGIGIPNEMFDKKMAMIPIDLQFRVLLCQALFGH 171
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD I WL N+LK+YE I++SHD F++ + I + I Y
Sbjct: 172 PEALLLDEPTNHLDLYSINWLGNFLKDYEGTVIVVSHDRHFLNTITTHIADIDYDTIIIY 231
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANV-ATSGQAKARE-KKLAK 297
Y + + + Q ++ ++ + ++LK+F+A+ A A+ Q++ RE KKL
Sbjct: 232 PGNYDDMVEMKTASREQEKADIKSKEKKISQLKEFVAKFGAGSRASQVQSRLREIKKLQP 291
Query: 298 MEIVETISEKPKPHFDFKFSRKPS-RLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFI 355
E+ + S +P+ F S K S ++V + + Y + + +L++ G K+ I
Sbjct: 292 QELKK--SNIQRPYIRFPLSDKSSGKVVLSLEAITKDYGDHQVIHPFSLEIYQGDKLGII 349
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE----IKNPSQKTVLDDLWDEY 411
G+NG+GK+TL+K L G+ G ++ G+ +Y+ Q + + Q+T+ + L +
Sbjct: 350 GNNGLGKTTLMKLLAGVEAPSSGSIKLGHQAICSYFPQNHSDVLADCGQETLFEWLRNRK 409
Query: 412 PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
N E+R L ++ ++ LSGGE A+L A +M N+LILDE NHLD
Sbjct: 410 TGINDQEIRSVLGKMLFGGDDAFKQIQALSGGETARLLMAGMMLENHNVLILDEANNHLD 469
Query: 472 VDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
+++ L A+ +Y GT + VSH+ GL+ D
Sbjct: 470 LESVSALSWAINDYKGTAIFVSHD----RGLIQD 499
Score = 60.1 bits (143), Expect = 4e-08
Identities = 48/210 (22%), Positives = 85/210 (39%), Gaps = 39/210 (18%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++++ G G NG GKSTLLK +MG+I G + + + Q I +
Sbjct: 17 LFDDVSVVFNPGNCYGLTGPNGAGKSTLLKIIMGMIEPTRGSISLP--KKVGILRQNIDS 74
Query: 398 PSQKTVLD-------DLWDEYPSWNQ------------------------------AELR 420
TVLD LW+ + +E
Sbjct: 75 FHDTTVLDCVIMGNTRLWEALQRRDNLYLQEFTDAIGMELGEIEEIIGEENGYRADSEAE 134
Query: 421 GALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR 480
L +G+ + + ++ ++ Q ++ + + L+LDEPTNHLD+ + L
Sbjct: 135 ELLTGIGIPNEMFDKKMAMIPIDLQFRVLLCQALFGHPEALLLDEPTNHLDLYSINWLGN 194
Query: 481 ALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L +Y GTV++VSH+ F + + + + +
Sbjct: 195 FLKDYEGTVIVVSHDRHFLNTITTHIADID 224
sp|P25256|TLRC_STRFR TYLOSIN RESISTANCE ATP-BINDING PROTEIN TLRC >gi|80765|pir||JQ1142
TlrC protein - Streptomyces fradiae >gi|153508 (M57437)
tylosin resistance protein [Streptomyces fradiae]
Length = 548
Score = 187 bits (470), Expect = 2e-46
Identities = 145/522 (27%), Positives = 240/522 (45%), Gaps = 31/522 (5%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
S L++ ++ + DR + VS + GE G +G NG GKST + ++ G PD G+V
Sbjct: 7 SQLSLHGVTKRYDDRVVLSQVSLAISPGEKAGIIGDNGAGKSTLLRLLAGEERPDAGEVT 66
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDE-MNAAL 120
VGY+ Q L T ++A+ A L +EA++ T +AE + DE + AL
Sbjct: 67 VIAPGGVGYLPQTLGLPPRATVQDAIDLAMTELRVLEAELRRTEAALAEAATDEALQDAL 126
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXX 179
L E+ + D Y DA+V+ GLGL L D+ + LSGG+R++
Sbjct: 127 TAYARLTEQYEVRDGYGADARVDAALHGLGLPGLPRDRRLGTLSGGERSRLALAATLASQ 186
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN LD+ + WL+ +L + + ++HD F+D + + V G G++R+
Sbjct: 187 PELLLLDEPTNDLDDRAVHWLEEHLSGHRGTVVTVTHDRVFLDRLTATVLEVDGRGVSRH 246
Query: 240 SMGYAEF-----------ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATS-GQ 287
GYA + ++ ++E +A+L+ A A+L D I RK A G
Sbjct: 247 GDGYAGYLAAKAAERRRRQQQYDEWRAELDRNRRLAEANVARL-DGIPRKMGKAAFGHGA 305
Query: 288 AKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVI-GYNEPLSSEIN--- 343
+AR + M V E+ + + RL A+ G E ++E++
Sbjct: 306 FRARGRDHGAMSRVRNAKERVERLTANPVAPPADRLSLTARIATADGPGEAPAAELDGVV 365
Query: 344 ---------LKVESGQKIAFIGSNGIGKSTLLKSLMG-LIPSLDGEVEKGNFQDIAYYEQ 393
L++ + +++ G NG GKSTLL L G L P G + ++
Sbjct: 366 VGSRLRVPKLRLGAAERLLITGPNGAGKSTLLSVLAGELSPDAGAVSVPGRVGHLR--QE 423
Query: 394 EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
E P++ TVL+ P + L+ + + RV LS G++ ++ A+L
Sbjct: 424 ETPWPAKLTVLEAFAHNRPGDRDEQADRRLSLGLFEPEALRLRVGELSYGQRRRIELARL 483
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
++ +L+LDEPTNHL EEL+ AL Y G +++V+H+
Sbjct: 484 VSEPVGLLLLDEPTNHLSPALVEELEEALTGYGGALVLVTHD 525
Score = 75.3 bits (182), Expect = 1e-12
Identities = 66/215 (30%), Positives = 95/215 (43%), Gaps = 44/215 (20%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPS 399
S+++L + G+K IG NG GKSTLL+ L G GEV + Y Q + P
Sbjct: 25 SQVSLAISPGEKAGIIGDNGAGKSTLLRLLAGEERPDAGEVTVIAPGGVGYLPQTLGLPP 84
Query: 400 QKTVLD--DLWDEYPSWNQAELR-----------------------------------GA 422
+ TV D DL +AELR GA
Sbjct: 85 RATVQDAIDLAMTELRVLEAELRRTEAALAEAATDEALQDALTAYARLTEQYEVRDGYGA 144
Query: 423 LARV-------GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK 475
ARV GL + R+ LSGGE+++L A + ++ +L+LDEPTN LD A
Sbjct: 145 DARVDAALHGLGLPGLPRDRRLGTLSGGERSRLALAATLASQPELLLLDEPTNDLDDRAV 204
Query: 476 EELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L + GTV+ V+H+ F + L + V+ +
Sbjct: 205 HWLEEHLSGHRGTVVTVTHDRVFLDRLTATVLEVD 239
emb|CAA14531| (AJ235270) ABC TRANSPORTER ATP-BINDING PROTEIN (abcT1) [Rickettsia
prowazekii]
Length = 555
Score = 186 bits (468), Expect = 3e-46
Identities = 135/521 (25%), Positives = 243/521 (45%), Gaps = 20/521 (3%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ + LS + I ++ + L IG +G NG GKST + I+ G EGK
Sbjct: 6 VYEMVGLSKIINGKQILKETNLSFLPKAKIGIIGPNGAGKSTLLKIMAGIDKEFEGKATA 65
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE-MSEDEMNAALE 121
+VGY+ Q L K + + E + + + ND K + M+ +EM E
Sbjct: 66 KIGIKVGYLPQEPYLDSTKNVFDNIVEGLREKTKLIDEFNDISNKFTDKMTNEEMQQLFE 125
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
ELQE++DN + + ++ ++E L P + ++ ++SGG++ +
Sbjct: 126 KQAELQEKIDNCNGWNLEREIEIAMLALRCPPK-EAEINKISGGEKRRVALCKLLLEKPD 184
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD E + WL++YLK YE I+I+HD F+D V I + +
Sbjct: 185 MLLLDEPTNHLDAESVSWLEDYLKYYEGTVIVITHDRYFLDNVTEWILEIDRGNCIPWKS 244
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
Y+ + ++KK LES E K ++R+ + + +A+ + K
Sbjct: 245 NYSSWLEQ-KQKKLALES------KEDDDRKKQLSRELEWIRQTPKARQSKNKARITAYQ 297
Query: 302 ETISEKPKPHFD-----FKFSRKPSRLVFEAKDLVIGYNEP-LSSEINLKVESGQKIAFI 355
E ++++ + D + LV EA+ + +N L S+ + KV G + I
Sbjct: 298 ELLNKQQEYKIDPTQIIIPNGPRLGDLVIEAEHIAKKFNNKILLSDFSFKVPRGAIVGII 357
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDL---WDEY 411
G NG GKSTL + G + G ++ G + Y +Q + KT+ +++ DE
Sbjct: 358 GPNGAGKSTLFNIITGKVMPDSGSIKIGPTVKLGYVDQSRDHLDDNKTIWEEISEGLDEL 417
Query: 412 PSWNQA-ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
N+ + R A + +V LSGGE+ ++ AKL+ +N+++LDEP+N L
Sbjct: 418 QLGNRIIKSRAYCAAFNFRGGDQQKKVGQLSGGERNRVHLAKLLKEGANVILLDEPSNDL 477
Query: 471 DVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
D+D L+ A++++ G VL++SH+ F + + + +I+ ++
Sbjct: 478 DIDTLRALEDAILDFAGCVLVISHDRWFLDRIATHIISYDQ 518
sp|P45127|YJJK_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN HI1252 >gi|1074699|pir||G64169
hypothetical protein HI1252 - Haemophilus influenzae
(strain Rd KW20) >gi|1574184 (U32805) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 556
Score = 185 bits (465), Expect = 7e-46
Identities = 136/506 (26%), Positives = 234/506 (45%), Gaps = 24/506 (4%)
Query: 16 RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHA 75
R I +D+S G IG +G NG GKST + I+ G EG+ ++GY+ Q
Sbjct: 20 RHILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEP 79
Query: 76 VLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF 135
L +T REA+ EA + + ++++ Y A+ D A E L+ + D
Sbjct: 80 KLEPQQTVREAVEEAVSEVKNALTRLDEVYALYADPDADFDKLAAEQAN-LEAIIQAHDG 138
Query: 136 YLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEE 195
+ +D ++E A L L P D + LSGG+R + TN+LD E
Sbjct: 139 HNLDNQLERAADALRL-PDWDAKIEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Query: 196 HILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV-HGLGITRYSMGYAEFERVFEEKK 254
+ WL+ +L +YE + I+HD F+D V I + G GI + Y+ + E++
Sbjct: 198 SVAWLERFLHDYEGTVVAITHDRYFLDNVAGWILELDRGEGIP-WEGNYSSWLEQKEKRL 256
Query: 255 AQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDF 314
Q ++ NA+ AK +++ + G+ + ++A+ + + + + + +
Sbjct: 257 EQEQATENARQKSIAKELEWVRQNP-----KGRQAKSKARMARFDELNSGEYQKRNETNE 311
Query: 315 KFSRKPSRL---VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLM 370
F RL V E ++L Y + L +++ + G + IG+NG GKSTL + L
Sbjct: 312 LFIPPGPRLGDKVIEVQNLTKSYGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLS 371
Query: 371 GLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWN--------QAELRGA 422
G G V G +A +Q + K + W+E + + R
Sbjct: 372 GQEQPDSGSVTMGETVVLASVDQFRDSMDDKKTV---WEEVSNGQDILTIGNFEIPSRAY 428
Query: 423 LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL 482
+ R + RV LSGGE+ +L AKL+ N+L+LDEPTN LDV+ L+ A+
Sbjct: 429 VGRFNFKGVDQQKRVGELSGGERGRLHLAKLLQRGGNVLLLDEPTNDLDVETLRALENAI 488
Query: 483 IEYPGTVLMVSHEPEFYEGLVSDVIN 508
+E+PG +++SH+ F + + + +++
Sbjct: 489 LEFPGCAMVISHDRWFLDRIATHILD 514
Score = 80.4 bits (195), Expect = 3e-14
Identities = 58/210 (27%), Positives = 97/210 (45%), Gaps = 40/210 (19%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQ 400
+I+L G KI +G NG GKSTLL+ + G+ +GE I Y QE K Q
Sbjct: 25 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPQPGIKIGYLPQEPKLEPQ 84
Query: 401 KTV-----------------LDDLWDEYP---------SWNQAELRGAL----------- 423
+TV LD+++ Y + QA L +
Sbjct: 85 QTVREAVEEAVSEVKNALTRLDEVYALYADPDADFDKLAAEQANLEAIIQAHDGHNLDNQ 144
Query: 424 ---ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR 480
A L ++++ LSGGE+ ++ +L+ + ++L+LDEPTNHLD ++ L+R
Sbjct: 145 LERAADALRLPDWDAKIEHLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLER 204
Query: 481 ALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L +Y GTV+ ++H+ F + + ++ +
Sbjct: 205 FLHDYEGTVVAITHDRYFLDNVAGWILELD 234
Score = 76.9 bits (186), Expect = 4e-13
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 38/246 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ V+NL+ +GDR + +D+SF + KG +G +GANG GKST +++G PD G V
Sbjct: 324 VIEVQNLTKSYGDRTLIDDLSFSIPKGAIVGIIGANGAGKSTLFRMLSGQEQPDSGSVT- 382
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
M + VL R+++ D+ E
Sbjct: 383 --------MGETVVLASVDQFRDSM--------------------------DDKKTVWEE 408
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
V Q+ L +F + G+ K V ELSGG+R +
Sbjct: 409 VSNGQDILTIGNFEIPSRAYVGRFNFKGVDQ--QKRVGELSGGERGRLHLAKLLQRGGNV 466
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITRYSM 241
TN LD E + L+N + + ++ISHD F+D + I G +T Y
Sbjct: 467 LLLDEPTNDLDVETLRALENAILEFPGCAMVISHDRWFLDRIATHILDYGDEGKVTFYEG 526
Query: 242 GYAEFE 247
++++E
Sbjct: 527 NFSDYE 532
emb|CAA17906.1| (AL022104) probable ABC transporter [Schizosaccharomyces pombe]
Length = 618
Score = 185 bits (464), Expect = 1e-45
Identities = 142/509 (27%), Positives = 239/509 (46%), Gaps = 33/509 (6%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+ + + + F R + E+ + L G+ G +G NG GKSTF+ + + +
Sbjct: 76 IKIDSYTLSFHGRLLIENATIELNHGQRYGLLGDNGSGKSTFLESVAA-------RDVEY 128
Query: 64 KKHRVGYM-DQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+H Y+ + A + A + +EA+I + ++D + LE+
Sbjct: 129 PEHIDSYLLNAEAEPSDVNAVDYIIQSAKDKVQKLEAEIEEL-----STADDVDDVLLES 183
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXX 181
EELD+ D +AK GLG T ++ K ++SGG R +
Sbjct: 184 K---YEELDDMDPSTFEAKAAMILHGLGFTQEMMAKPTKDMSGGWRMRVALSRALFIKPS 240
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEV-VNIIYHVHGLGITRYS 240
TN+LD E ++WL+NYL Y+ ++ SH F++ V NII + Y
Sbjct: 241 LLLLDEPTNHLDLEAVVWLENYLAKYDKILVVTSHSQDFLNNVCTNIIDLTSKKQLVYYG 300
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEI 300
+ + R EE + + Q E A +K FIA QAK+++K + KME
Sbjct: 301 GNFDIYMRTKEENETNQMKAYLKQQEEIAHIKKFIASAGTYANLVRQAKSKQKIIDKMEA 360
Query: 301 VETISEKPKP--HFDFKFS--RKPSRLVFEAKDLVIGYN----EPLSSEINLKVESGQKI 352
+ EKP+P F F+F RK + D+ Y+ L +++ ++ ++
Sbjct: 361 AGLV-EKPEPPRQFSFEFDEVRKLPPPIIAFNDVAFSYDGNLDHALYRDLSFGIDMDSRV 419
Query: 353 AFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDE 410
A +G NG GKSTLL + GL+ ++G V + + +A Y Q + P K+ L+ + D
Sbjct: 420 AIVGKNGTGKSTLLNLITGLLIPIEGNVSRYSGLKMAKYSQHSADQLPYDKSPLEYIMDT 479
Query: 411 Y-PSWNQAEL---RGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
Y P + + EL R L + GL+ S + LS G ++++ FA L + +IL+LDEP
Sbjct: 480 YKPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLLDEP 539
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHE 495
TNHLD+ + + L +A+ + G V++VSH+
Sbjct: 540 TNHLDITSIDALAKAINVWTGGVVLVSHD 568
Score = 71.4 bits (172), Expect = 2e-11
Identities = 51/200 (25%), Positives = 94/200 (46%), Gaps = 29/200 (14%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGL-------IPS--LDGEVEKGNFQDI 388
L +++ GQ+ +G NG GKST L+S+ I S L+ E E + +
Sbjct: 90 LIENATIELNHGQRYGLLGDNGSGKSTFLESVAARDVEYPEHIDSYLLNAEAEPSDVNAV 149
Query: 389 AYYEQEIKNPSQK--------------------TVLDDLWDEYPSWNQAELRGALARVGL 428
Y Q K+ QK + ++L D PS +A+ L +G
Sbjct: 150 DYIIQSAKDKVQKLEAEIEELSTADDVDDVLLESKYEELDDMDPSTFEAKAAMILHGLGF 209
Query: 429 TAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGT 488
T + + +SGG + ++ ++ + + ++L+LDEPTNHLD++A L+ L +Y
Sbjct: 210 TQEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLEAVVWLENYLAKYDKI 269
Query: 489 VLMVSHEPEFYEGLVSDVIN 508
+++ SH +F + +++I+
Sbjct: 270 LVVTSHSQDFLNNVCTNIID 289
ref|NP_011199.1|GCN20| Member of ATP-binding cassette (ABC) family of proteins; Gcn20p
>gi|1169871|sp|P43535|GC20_YEAST GCN20 PROTEIN
>gi|1363661|pir||S56146 GCN20 protein - yeast
(Saccharomyces cerevisiae) >gi|643479 (U19971) Gcn20p
[Saccharomyces cerevisiae] >gi|836764|dbj|BAA09248.1|
(D50617) YFR009W [Saccharomyces cerevisiae]
Length = 752
Score = 184 bits (463), Expect = 1e-45
Identities = 147/528 (27%), Positives = 243/528 (45%), Gaps = 34/528 (6%)
Query: 12 GFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTL--VPDEGKVIWSKKHRVG 69
G G R I + L G G VG NG GKST + ++ VP ++ ++ G
Sbjct: 209 GDGQR-ILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALSRRELNVPKHVSILHVEQELRG 267
Query: 70 YMDQ--HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQ 127
+ +VL ++ L+E EA+IN+ +M + ++ +LE V +L
Sbjct: 268 DDTKALQSVLDADVWRKQLLSE--------EAKINERLKEMDVLRQEFEEDSLE-VKKLD 318
Query: 128 EELDNSDFYLI--------------DAKVEETARGLGL-TPLLDKDVAELSGGQRTKXXX 172
E ++ D +LI +A+ GLG T + SGG R +
Sbjct: 319 NEREDLDNHLIQISDKLVDMESDKAEARAASILYGLGFSTEAQQQPTNSFSGGWRMRLSL 378
Query: 173 XXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVH 232
+N LD I +L YLK Y N + +SHD F++EV I + H
Sbjct: 379 ARALFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLNEVATDIIYQH 438
Query: 233 GLGITRY-SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAR 291
+ Y + F EE++ + ++ Q+ + L++FI + + N A S +A++R
Sbjct: 439 NERLDYYRGQDFDTFYTTKEERRKNAQREYDNQMVYRKHLQEFIDKYRYNAAKSQEAQSR 498
Query: 292 EKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP--LSSEINLKVESG 349
KKL K+ ++E + F F K S + + +D+ GY+E L ++NL V+
Sbjct: 499 IKKLEKLPVLEPPEQDKTIDFKFPECDKLSPPIIQLQDVSFGYDENNLLLKDVNLDVQMD 558
Query: 350 QKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTV--LDDL 407
+IA +G+NG GK+TLLK +M + L G V + I Y+ Q + T +D +
Sbjct: 559 SRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSMDLTTSAVDWM 618
Query: 408 WDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPT 467
+P E R L G+T ++ +LSGG+++++ FA L +IL+LDEP+
Sbjct: 619 SKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNNPHILVLDEPS 678
Query: 468 NHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
NHLD + L AL + G VLMVSH+ + + ++ E+ T +
Sbjct: 679 NHLDTTGLDALVEALKNFNGGVLMVSHDISVIDSVCKEIWVSEQGTVK 726
Score = 68.3 bits (164), Expect = 1e-10
Identities = 69/298 (23%), Positives = 117/298 (39%), Gaps = 75/298 (25%)
Query: 279 KANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSR-----------KPSRLVFEA 327
KA + + R K K E + I+++ + +D F + K + +
Sbjct: 144 KAEQKIAKKVAKRNNKFVKYEASKLINDQKEEDYDSFFLQINPLEFGSSAGKSKDIHIDT 203
Query: 328 KDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD 387
DL +G + + S L + G + +G NGIGKSTLL++L E+
Sbjct: 204 FDLYVGDGQRILSNAQLTLSFGHRYGLVGQNGIGKSTLLRALS------RRELNVPKHVS 257
Query: 388 IAYYEQEIKNPSQK---TVLD-DLWDEYPSWNQAELRGALARVGLTAKQIE--------- 434
I + EQE++ K +VLD D+W + +A++ L + + ++ E
Sbjct: 258 ILHVEQELRGDDTKALQSVLDADVWRKQLLSEEAKINERLKEMDVLRQEFEEDSLEVKKL 317
Query: 435 -------------------------------SRVYVLSGGEQA--------------KLR 449
S +Y L +A +L
Sbjct: 318 DNEREDLDNHLIQISDKLVDMESDKAEARAASILYGLGFSTEAQQQPTNSFSGGWRMRLS 377
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVI 507
A+ + + ++L+LDEP+N LDV + L L YP TVL VSH+ F + +D+I
Sbjct: 378 LARALFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLNEVATDII 435
gb|AAC67943.1| (AE001308) ABC Transporter Protein ATPase [Chlamydia trachomatis]
Length = 528
Score = 183 bits (461), Expect = 2e-45
Identities = 141/504 (27%), Positives = 243/504 (47%), Gaps = 20/504 (3%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MSI+ + + G R +F+DVS G G G NG GKST + IITG + P G +
Sbjct: 1 MSIV-LDKIGKTLGTRVLFDDVSVVFNPGNRYGLTGPNGAGKSTLLKIITGLVEPSRGTI 59
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
KK +G + Q+ + + L++ + + Y +E+ +A
Sbjct: 60 SLPKK--IGILRQNIDSFGDVIVLDCVIMGNSRLWEAMQRRDALY------AEEFTDAIG 111
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXX 179
+GE++E + D Y +++ EE G+G+ + +A + + +
Sbjct: 112 MELGEIEEIIGEEDGYRAESEAEELLLGIGIPEEFFSQKMATIPLDLQFRVLLCQALFGH 171
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD I WL ++LK+Y I++SHD F++ + I + I Y
Sbjct: 172 PEALLLDEPTNHLDLHSINWLGSFLKDYNGTVIVVSHDRHFLNTITTHIADIDYDTIIIY 231
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANV-ATSGQAKARE-KKLAK 297
Y + + Q ++ ++ + A+L++F+A+ A A+ Q++ RE KKL
Sbjct: 232 PGNYDAMVEMKTASREQEKADIKSKEKKIAQLREFVAKFGAGSRASQVQSRLREIKKLQP 291
Query: 298 MEIVETISEKPKPHFDFKFSRKPS-RLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFI 355
E+ + S +P+ F S K S ++VF + + Y+ +PL +L++ G KI I
Sbjct: 292 QELKK--SNIQRPYIRFPVSDKASGKVVFSIEGISKTYDADPLFKPFSLEIYQGDKIGVI 349
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE----IKNPSQKTVLDDLWDEY 411
G+NG+GK+TL+K L G+ G+V+ G+ +Y+ Q +K+ ++T+ + L
Sbjct: 350 GNNGLGKTTLMKLLAGVEQPSQGQVKLGHNVAFSYFPQNHADILKDCGEETLFEWLRRRK 409
Query: 412 PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
E+R L ++ +V LSGGE A+L A +M N+LILDE NHLD
Sbjct: 410 TGITDQEVRSVLGKMLFGGDDAFKQVKALSGGETARLLMAGMMLENHNMLILDEANNHLD 469
Query: 472 VDAKEELKRALIEYPGTVLMVSHE 495
+++ L A+ +YPGT + VSH+
Sbjct: 470 LESVSALAWAINDYPGTAIFVSHD 493
Score = 56.2 bits (133), Expect = 6e-07
Identities = 50/212 (23%), Positives = 85/212 (39%), Gaps = 43/212 (20%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++++ G + G NG GKSTLLK + GL+ G + + I Q I +
Sbjct: 17 LFDDVSVVFNPGNRYGLTGPNGAGKSTLLKIITGLVEPSRGTISLP--KKIGILRQNIDS 74
Query: 398 PSQKTVLD-------DLW--------------------------------DEYPSWNQAE 418
VLD LW D Y + ++AE
Sbjct: 75 FGDVIVLDCVIMGNSRLWEAMQRRDALYAEEFTDAIGMELGEIEEIIGEEDGYRAESEAE 134
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
L +G+ + ++ + Q ++ + + L+LDEPTNHLD+ + L
Sbjct: 135 --ELLLGIGIPEEFFSQKMATIPLDLQFRVLLCQALFGHPEALLLDEPTNHLDLHSINWL 192
Query: 479 KRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L +Y GTV++VSH+ F + + + + +
Sbjct: 193 GSFLKDYNGTVIVVSHDRHFLNTITTHIADID 224
emb|CAA18386.1| (AL022299) putative ABC transporter subunit [Schizosaccharomyces
pombe]
Length = 736
Score = 183 bits (461), Expect = 2e-45
Identities = 136/534 (25%), Positives = 237/534 (43%), Gaps = 36/534 (6%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGT--LVPDEGKVI 61
+ + + F I S L +G G G NG GKST + ++ +P ++
Sbjct: 183 IKIDGIDLAFAGHRILTGASLTLAQGRRYGLTGRNGIGKSTLLRALSRREIAIPTHITIL 242
Query: 62 WSKKHRVG-------------------YMDQHAVLGKGKTTREALAEAFQYLFDIEAQIN 102
++ G DQ + + T + L E + + +
Sbjct: 243 HVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITNRLSTIEKELEELSK-----DQTAD 297
Query: 103 DTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAE- 161
+ E DE++ L ++ Q +L D +++ GLG T + +
Sbjct: 298 QAISRRLERERDELDLRLLDI---QNKLSEMDSDRAESRAATILAGLGFTQEMQSHATKT 354
Query: 162 LSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFM 221
SGG R + +N LD I +L YL+ Y+N +++SHD F+
Sbjct: 355 FSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQTYKNIVLVVSHDRSFL 414
Query: 222 DEVVNIIYHVHGLGITRYSMGYAEFERVFEEK-KAQLESLHNAQVAEQAKLKDFIARKKA 280
+EV I H H + Y +++F EE+ K QL + Q+ + L+ FI + +
Sbjct: 415 NEVATDIIHQHSERLDYYKGNFSQFYATREERCKNQLRE-YEKQMEYRKHLQSFIDKFRY 473
Query: 281 NVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGY--NEPL 338
N A S +A++R KKL K+ I+E + + F+F K S + + D+ Y P+
Sbjct: 474 NAAKSSEAQSRIKKLEKLPILEKPQTEEEVEFEFPPVEKISPPILQMSDVNFEYVPGHPI 533
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP 398
+++ V+ +I +G NG GKST+LK L+ + G V + IAY+ Q +
Sbjct: 534 LKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHVDT 593
Query: 399 SQKTV--LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
+ L L +P + E R L G++ ++ LSGG+++++ FA L
Sbjct: 594 LDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQ 653
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ILILDEPTNHLD+++ + L RA+ + G V++VSH+ +F + + + C+
Sbjct: 654 NPHILILDEPTNHLDMESMDALTRAVKRFQGGVILVSHDVDFLDKTCTSIWQCD 707
Score = 53.1 bits (125), Expect = 5e-06
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 48/235 (20%)
Query: 18 IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVL 77
I + V + IG VG NG GKST + ++ L P G V + R+ Y QH V
Sbjct: 533 ILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHV- 591
Query: 78 GKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYL 137
D ++ L + L +
Sbjct: 592 ------------------------------------DTLDLNLNALSFLAKTFPGKG--- 612
Query: 138 IDAKVEETARGLGLT----PLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLD 193
EE R LG PL + + LSGGQ+++ TN+LD
Sbjct: 613 ----EEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLD 668
Query: 194 EEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFER 248
E + L +K ++ IL+SHDV F+D+ I+ ++++ +++++
Sbjct: 669 MESMDALTRAVKRFQGGVILVSHDVDFLDKTCTSIWQCDHNVVSKFDGTISQYKK 723
emb|CAB04880.1| (Z82059) similar to ABC transporters (2 domains); cDNA EST
EMBL:D73856 comes from this gene; cDNA EST EMBL:D73975
comes from this gene; cDNA EST EMBL:C09722 comes from
this gene; cDNA EST yk428c4.5 comes from this gene; cDNA
... >gi|3881299|emb|CAA21772.1| (AL032665) similar to
ABC transporters (2 domains); cDNA EST EMBL:D73856 comes
from this gene; cDNA EST EMBL:D73975 comes from this
gene; cDNA EST EMBL:C09722 comes from this gene; cDNA
EST yk428c4.5 comes from this gene; cDN...
Length = 622
Score = 183 bits (460), Expect = 3e-45
Identities = 135/517 (26%), Positives = 237/517 (45%), Gaps = 27/517 (5%)
Query: 6 VKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKK 65
V++L+ F R I D L +G G +G NG GKST + I +P V
Sbjct: 84 VESLTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTIIQAIYNKEMPIPESVDM--- 140
Query: 66 HRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGE 125
Y+ + KT +A+ + ++E + E S+D++ +
Sbjct: 141 ----YLVSREMPASEKTALQAVVDVDSVRKELEHLAEQLASQTDEESQDKLM-------D 189
Query: 126 LQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXXXXXXX 184
+ E LD D L + K E GLG T + K + SGG R +
Sbjct: 190 VYERLDEMDASLAEKKAAEILHGLGFTKTMQMKKCKDFSGGWRMRIALARALFLKPSVLL 249
Query: 185 XXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYA 244
TN+LD E +WL+ L Y+ +++SH FM+ V I H+ + Y Y
Sbjct: 250 LDEPTNHLDLEACVWLEEELAQYKRTLLVVSHSQDFMNGVCTNIIHLFQKQLVYYGGNYD 309
Query: 245 EFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR-KKANVATSGQAKAREKKLAKMEI--- 300
+F + E + +N + ++ +KD++AR + + QA+++EK +AKM
Sbjct: 310 QFVKTRLELLENQQKRYNWEQSQLQHMKDYVARFGHGSAKLARQAQSKEKTMAKMIAGGL 369
Query: 301 -VETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAFIG 356
+ ++E K + F P ++ + + YNE + +I+ ++ +IA +G
Sbjct: 370 AEKAVTETVKQFYFFDAGEIPPPVIM-VQHVSFRYNENTPWIYKDIDFGIDLDTRIALVG 428
Query: 357 SNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDEYPSW 414
NG GKSTLLK L + DG + + + I Y Q + P + L+ + E+P
Sbjct: 429 PNGAGKSTLLKLLCTDVMPTDGLIRRHSHCKIGRYHQHLHEELPLDLSALEFMMKEFPDV 488
Query: 415 NQAE-LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
+ E +R + R G+T ++ + LS G++ ++ FA L + ++L+LDEPTNHLD++
Sbjct: 489 KEKEEMRKIVGRYGITGREQVCPMKQLSDGQRCRVSFAWLAWQQPHLLLLDEPTNHLDME 548
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ + L A+ +PG +++VSH+ + +V C+
Sbjct: 549 SIDALAEAINCFPGGMILVSHDFRLVSQVAEEVWVCD 585
sp|P37797|YJJK_ECOLI ABC TRANSPORTER ATP-BINDING PROTEIN YJJK >gi|2367384 (AE000509)
putative ATP-binding component of a transport system
[Escherichia coli]
Length = 555
Score = 182 bits (457), Expect = 6e-45
Identities = 137/510 (26%), Positives = 234/510 (45%), Gaps = 26/510 (5%)
Query: 16 RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHA 75
R I +++S G IG +G NG GKST + I+ G EG+ ++GY+ Q
Sbjct: 19 RHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEP 78
Query: 76 VLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF 135
L T RE++ EA + + ++++ Y A+ D A E G L+E + D
Sbjct: 79 QLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQ-GRLEEIIQAHDG 137
Query: 136 YLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEE 195
+ ++ ++E A L L P D +A LSGG+R + TN+LD E
Sbjct: 138 HNLNVQLERAADALRL-PDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 196
Query: 196 HILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV-HGLGITRYSMGYAEFERVFEEKK 254
+ WL+ +L ++E + I+HD F+D V I + G GI + Y+ + +++
Sbjct: 197 SVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIP-WEGNYSSWLEQKDQRL 255
Query: 255 AQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDF 314
AQ S A+ K +++ + T G+ + +LA+ E + + + + +
Sbjct: 256 AQEASQEAARRKSIEKELEWVRQ-----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 315 KFSRKPSRL---VFEAKDLVIGYNEPLS-SEINLKVESGQKIAFIGSNGIGKSTLLKSLM 370
F RL V E +L Y + L +++ + G + IG NG GKSTL + +
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 371 GLIPSLDGEVEKGNFQDIAYYEQ-EIKNPSQKTVLDDLWDEYPSW--------NQAELRG 421
G G + G +A +Q + KTV W+E + R
Sbjct: 371 GQEQPDSGTITLGETVKLASVDQFRDSMDNSKTV----WEEVSGGLDIMKIGNTEMPSRA 426
Query: 422 ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
+ R RV LSGGE+ +L AKL+ N+L+LDEPTN LD++ L+ A
Sbjct: 427 YVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENA 486
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
L+E+PG +++SH+ F + + + +++ ++
Sbjct: 487 LLEFPGCAMVISHDRWFLDRIATHILDYQD 516
Score = 72.6 bits (175), Expect = 7e-12
Identities = 66/257 (25%), Positives = 103/257 (39%), Gaps = 43/257 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L V NL +GDR + +D+SF + KG +G +G NG GKST +I+G PD G +
Sbjct: 323 VLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL 382
Query: 63 SKKHRVGYMDQ-HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+ ++ +DQ + KT E ++ + +I +T M
Sbjct: 383 GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIM-----KIGNTEMPS------------- 424
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+ + +F +D K V ELSGG+R +
Sbjct: 425 -----RAYVGRFNFKGVDQ---------------GKRVGELSGGERGRLHLAKLLQVGGN 464
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN LD E + L+N L + ++ISHD F+D + I G +
Sbjct: 465 MLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFE 524
Query: 242 G-YAEFERVFEEKKAQL 257
G + E+E E KK L
Sbjct: 525 GNFTEYE---EYKKRTL 538
pir||S56615 hypothetical protein f579 - Escherichia coli >gi|537231 (U14003)
ORF_f579 [Escherichia coli]
Length = 579
Score = 182 bits (457), Expect = 6e-45
Identities = 137/510 (26%), Positives = 234/510 (45%), Gaps = 26/510 (5%)
Query: 16 RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHA 75
R I +++S G IG +G NG GKST + I+ G EG+ ++GY+ Q
Sbjct: 19 RHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEP 78
Query: 76 VLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF 135
L T RE++ EA + + ++++ Y A+ D A E G L+E + D
Sbjct: 79 QLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQ-GRLEEIIQAHDG 137
Query: 136 YLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEE 195
+ ++ ++E A L L P D +A LSGG+R + TN+LD E
Sbjct: 138 HNLNVQLERAADALRL-PDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 196
Query: 196 HILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV-HGLGITRYSMGYAEFERVFEEKK 254
+ WL+ +L ++E + I+HD F+D V I + G GI + Y+ + +++
Sbjct: 197 SVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIP-WEGNYSSWLEQKDQRL 255
Query: 255 AQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDF 314
AQ S A+ K +++ + T G+ + +LA+ E + + + + +
Sbjct: 256 AQEASQEAARRKSIEKELEWVRQ-----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 315 KFSRKPSRL---VFEAKDLVIGYNEPLS-SEINLKVESGQKIAFIGSNGIGKSTLLKSLM 370
F RL V E +L Y + L +++ + G + IG NG GKSTL + +
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 371 GLIPSLDGEVEKGNFQDIAYYEQ-EIKNPSQKTVLDDLWDEYPSW--------NQAELRG 421
G G + G +A +Q + KTV W+E + R
Sbjct: 371 GQEQPDSGTITLGETVKLASVDQFRDSMDNSKTV----WEEVSGGLDIMKIGNTEMPSRA 426
Query: 422 ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
+ R RV LSGGE+ +L AKL+ N+L+LDEPTN LD++ L+ A
Sbjct: 427 YVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENA 486
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
L+E+PG +++SH+ F + + + +++ ++
Sbjct: 487 LLEFPGCAMVISHDRWFLDRIATHILDYQD 516
Score = 75.3 bits (182), Expect = 1e-12
Identities = 71/283 (25%), Positives = 112/283 (39%), Gaps = 43/283 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L V NL +GDR + +D+SF + KG +G +G NG GKST +I+G PD G +
Sbjct: 323 VLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL 382
Query: 63 SKKHRVGYMDQ-HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+ ++ +DQ + KT E ++ + +I +T M
Sbjct: 383 GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIM-----KIGNTEMPS------------- 424
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+ + +F +D K V ELSGG+R +
Sbjct: 425 -----RAYVGRFNFKGVDQ---------------GKRVGELSGGERGRLHLAKLLQVGGN 464
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN LD E + L+N L + ++ISHD F+D + I G +
Sbjct: 465 MLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFE 524
Query: 242 G-YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVA 283
G + E+E E KK L + A Q + + RK + A
Sbjct: 525 GNFTEYE---EYKKRTLGAARAGAEAYQVQAYCEVMRKMPDAA 564
emb|CAB73146.1| (AL139076) ABC transport system ATP-binding protein [Campylobacter
jejuni]
Length = 643
Score = 179 bits (450), Expect = 4e-44
Identities = 140/530 (26%), Positives = 255/530 (47%), Gaps = 39/530 (7%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+++++ S FGD+ + +V+F +GE I +G NGEGKSTF+ + G L D G++
Sbjct: 1 MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKSTFLKTLLGALPLDSGRI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNA-A 119
I + + Q + +EA+ Q L +I + + + ++ ED N
Sbjct: 61 IRQNGKSIAMLSQTVDFNANLSVKEAIK---QELVEIYNTLEEYEILHKKLEEDPSNKDY 117
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXX 179
L+ + L +D+ D + I++K+ + L ++ ++ LSGG+ +
Sbjct: 118 LQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTLSGGEIRRVGLCILLLKN 177
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD +L+ LKN + I ISHD F+D + + V ++ +
Sbjct: 178 PDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYFIDAIAHKCVEVEQGKLSIF 237
Query: 240 SMGYAEFERVFEEKKAQLESL---HNAQVAE------------QAKLKDFIARKKANVAT 284
GYA + E+K L+SL H + + +A+LK RK+
Sbjct: 238 KGGYANY---LEKKTQILQSLAKSHETLLKQLKSEEEWLRRGVKARLKRNEGRKERIFKM 294
Query: 285 SGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGY-NEPLSSEIN 343
+AK + ++++ + +F+ + + +++FE K++ N+ L + +
Sbjct: 295 REEAKKNPGAIKRLKLE---ISRAALNFNGEKTINRKKMLFELKNISKNINNKNLFKDFS 351
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ--EIKNPSQK 401
++ G++IA +G NG GKSTLLK L+G I GE+++G + I Y++Q + N S K
Sbjct: 352 TRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGELK-IGYFDQARSLVN-SDK 409
Query: 402 TVLDDLWDEYPSWNQAELRGALARVGLTAKQ-------IESRVYVLSGGEQAKLRFAKLM 454
++L+ ++ E+RG V K ++ V +LSGGE+ ++ A L
Sbjct: 410 SLLEIFCPN--GGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSVALLSGGEKNRVALALLF 467
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVS 504
E ++LILDEPTN LD+ L+ L+ + G +L+VSH+ F + + +
Sbjct: 468 AKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHDRYFVDKIAT 517
Score = 83.1 bits (202), Expect = 5e-15
Identities = 89/346 (25%), Positives = 149/346 (42%), Gaps = 56/346 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ +KN+S ++ +F+D S R+L+GE I VG NG GKST + I+ G + D G++
Sbjct: 331 LFELKNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKR 390
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ ++GY DQ L + ++L E F ++ M +
Sbjct: 391 GEL-KIGYFDQARSL---VNSDKSLLEIFCPNGGDRVEVRGKNMHV-------------- 432
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
G L+ L +F LDK VA LSGG++ +
Sbjct: 433 YGYLKNFLFPKEF-------------------LDKSVALLSGGEKNRVALALLFAKEYDV 473
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI-----T 237
TN LD I L+ YL ++E A +L+SHD F+D++ +Y G G T
Sbjct: 474 LILDEPTNDLDIATINILEEYLLSFEGAILLVSHDRYFVDKIATKLYAFEGNGYINILHT 533
Query: 238 RYSMGYAEFERVFEE-----KKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKA-- 290
Y+ Y E E+ EE + Q + +N Q + +K ++ K+ + + K
Sbjct: 534 LYT-EYLENEKEIEELDNFALELQTQEQNNNQKEKSSKK---LSYKENEILKNHPEKIDF 589
Query: 291 REKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE 336
E+K+AK+ + +S+ P + + ++ L K+L I NE
Sbjct: 590 LEQKIAKLN--QDLSD-PNVYQEIGINKLYQELEVMQKELEILENE 632
Score = 78.0 bits (189), Expect = 2e-13
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 44/214 (20%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEI---- 395
+E+N G+KIA IG NG GKST LK+L+G +P G + + N + IA Q +
Sbjct: 20 NEVNFSANEGEKIAIIGKNGEGKSTFLKTLLGALPLDSGRIIRQNGKSIAMLSQTVDFNA 79
Query: 396 ------------------------------KNPSQKTVLDD------LWDEYPSWN-QAE 418
++PS K L L D +W+ +++
Sbjct: 80 NLSVKEAIKQELVEIYNTLEEYEILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESK 139
Query: 419 LRGALARVGLTAKQIESRVY-VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ L L + E+R+ LSGGE ++ L+ +IL+LDEPTNHLDV
Sbjct: 140 IIRVLKEFSLL--EYENRIISTLSGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSF 197
Query: 478 LKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
L+ L V+ +SH+ F + + + E+
Sbjct: 198 LEELLKNSKMCVIFISHDRYFIDAIAHKCVEVEQ 231
emb|CAB40692.1| (AL049587) putative ABC transporter [Streptomyces coelicolor]
Length = 547
Score = 178 bits (448), Expect = 7e-44
Identities = 149/529 (28%), Positives = 247/529 (46%), Gaps = 47/529 (8%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L KNL+ G GDR++F + + G+ IG VGANG GKST + ++ G P+EG++ S
Sbjct: 5 LVAKNLAAGHGDRSLFTGLDLVVAPGDVIGLVGANGAGKSTLLRMLAGLTNPEEGELRLS 64
Query: 64 KKHR-VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKM---AEMSEDEMNAA 119
VG++ Q G++ RE LA + D + +++ + A ++D A
Sbjct: 65 PPTATVGHLPQEPERRPGESVREFLARRTG-VTDAQRAMDEATQALVDGAPGADDAYATA 123
Query: 120 LEN-VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
LE +G L +D +D + EETA LGLT LD+ + LSGGQ +
Sbjct: 124 LERWLG-----LGGAD---LDDRAEETADALGLTVDLDQPMTSLSGGQAARAGLASLLLS 175
Query: 179 XXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVH--GLGI 236
TN LD + + L+ ++ +++SHD F+ V + + I
Sbjct: 176 RYDVFLLDEPTNDLDLDGLERLERFVTGLRAGTVVVSHDREFLTRTVTKVLELDLAQRQI 235
Query: 237 TRYSMGYA---------------EFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKAN 281
Y GY E+E + +K+A L+ Q A K RK N
Sbjct: 236 NLYGGGYEAYLEEREVARRHARDEYEE-YADKRASLQDRAQTQRAWMDKGVKNARRKAGN 294
Query: 282 ----VATSGQAKAREKKLAK----MEIVETIS--EKPKPHFDFKF----SRKPSRLVFEA 327
+ +++A EK+ AK ++E + E+P+ +D + + + +V
Sbjct: 295 DNDKIGRKFRSEASEKQAAKARQTQRMIERLDVVEEPRKEWDLRMEIASAPRSGAVVATL 354
Query: 328 KDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD 387
+D + + + ++++++ ++A G+NG GKSTLL +L+G +P G G+
Sbjct: 355 RDAEVRRGDFVLGPVSVQIDWADRVAVTGANGAGKSTLLGALLGRVPLDAGHAALGSGVL 414
Query: 388 IAYYEQEIKN-PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQA 446
+ +Q K + +LD P AE+R LA+ L A + LS GE+
Sbjct: 415 LGEVDQARKLFHGSEMLLDAFRAAVPDVEPAEIRTLLAKFALKADHVVRPASTLSPGERT 474
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
+ A L N+L+LDEPTNHLD+ A E+L+ AL Y GT+L+++H+
Sbjct: 475 RAALALLQGRGVNLLVLDEPTNHLDLPAIEQLESALDAYEGTLLLITHD 523
Score = 69.1 bits (166), Expect = 8e-11
Identities = 60/223 (26%), Positives = 99/223 (43%), Gaps = 39/223 (17%)
Query: 327 AKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN- 384
AK+L G+ + L + ++L V G I +G+NG GKSTLL+ L GL +GE+
Sbjct: 7 AKNLAAGHGDRSLFTGLDLVVAPGDVIGLVGANGAGKSTLLRMLAGLTNPEEGELRLSPP 66
Query: 385 FQDIAYYEQEIKNPSQKTV----------------LDD----LWDEYPSWNQAELRGALA 424
+ + QE + ++V +D+ L D P + A
Sbjct: 67 TATVGHLPQEPERRPGESVREFLARRTGVTDAQRAMDEATQALVDGAPGADDAYATALER 126
Query: 425 RVGLTAKQIESR-----------------VYVLSGGEQAKLRFAKLMNTESNILILDEPT 467
+GL ++ R + LSGG+ A+ A L+ + ++ +LDEPT
Sbjct: 127 WLGLGGADLDDRAEETADALGLTVDLDQPMTSLSGGQAARAGLASLLLSRYDVFLLDEPT 186
Query: 468 NHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
N LD+D E L+R + ++VSH+ EF V+ V+ +
Sbjct: 187 NDLDLDGLERLERFVTGLRAGTVVVSHDREFLTRTVTKVLELD 229
dbj|BAA18411| (D90914) ABC transporter [Synechocystis sp.]
Length = 636
Score = 178 bits (448), Expect = 7e-44
Identities = 145/528 (27%), Positives = 246/528 (46%), Gaps = 31/528 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+++ V++L FG + I D +F + G+ +G +G NG GKST + +I G L P +G
Sbjct: 1 MALITVQSLRKDFGIKEILRDATFNIEPGDRVGLIGVNGSGKSTLLKMIAG-LEPFDGGE 59
Query: 61 IW-SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
W + +V Y+ Q + +T E + + + Q K+A DE
Sbjct: 60 YWCNSSAKVVYLPQQPEMDGDRTVLEQVFVDSGEQWQLVKQYELLSDKLAHQGSDEQ--L 117
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXX 179
L + L +++ S + ++ + + LG+ L D V +LSGG R +
Sbjct: 118 LNQLSALSAQMETSGAWELETQAKIILTQLGVDHL-DAKVGDLSGGYRKRVAIAAALLSQ 176
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD + WL++YL+ + A +LI+HD F+D V N I + + Y
Sbjct: 177 PDVLLMDEPTNHLDAFSVEWLQSYLQRFRGALLLITHDRYFLDRVTNRILEIDQGELYSY 236
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR-----KKANVATSGQAKAREKK 294
+ Y + KKA+ E ++ + Q K + + R K+ A S + KAR +
Sbjct: 237 NGNYG----YYLTKKAEAEE---SEQSSQKKHRGVLRRELEWLKRGPKARSTKQKARIDR 289
Query: 295 LAKMEIVETISEKPKPHFDFKFS-RKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKI 352
+ M+ ET + D + R+ + V E +++ G+ N+ L + + G ++
Sbjct: 290 IQDMQ--ETSFKTGTGKVDISTAGRRIGKKVVELENISKGFENKQLIKDFSYIFTPGDRV 347
Query: 353 AFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK----NPSQKTVLDDLW 408
+G NG+GKSTL+ + G + G V+ G+ Y++Q NP+Q+ V+D L
Sbjct: 348 GIVGKNGVGKSTLMNMITGRLEPDQGTVDIGSTIHFGYFDQHSDDLSLNPNQR-VIDYLK 406
Query: 409 D--EYPSWNQAELRGA---LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILIL 463
E E+ A L R Q + + LSGGE+ +L +++ N+LIL
Sbjct: 407 SVAELIKTTDGEVITAGQMLERFLFPPNQQFAPIAKLSGGEKRRLFLLRVLMRAPNVLIL 466
Query: 464 DEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
DEPTN LDV L+ L ++ G V++VSH+ F + V + EE
Sbjct: 467 DEPTNDLDVQTLAVLEDYLEDFNGCVIVVSHDRYFLDRTVETIFAFEE 514
pir||S25202 srmB protein - Streptomyces ambofaciens >gi|581584|emb|CAA45050|
(X63451) SrmB [Streptomyces ambofaciens]
Length = 550
Score = 176 bits (443), Expect = 3e-43
Identities = 139/519 (26%), Positives = 237/519 (44%), Gaps = 34/519 (6%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHR 67
+++ + D + + V F + GE +G +G NG GKST + I+ G + PD G +
Sbjct: 10 DITKRYHDCVVLDRVGFSIKPGEKVGVIGDNGSGKSTLLKILAGRVEPDNGALTVVAPGG 69
Query: 68 VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEM----SEDEMNAALENV 123
VGY+ Q L T ++A+ A L ++EA + + ++ E SE E++A L+
Sbjct: 70 VGYLAQTLELPLDATVQDAVDLALSDLRELEAAMREAEAELGESDENGSERELSAGLQRY 129
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKD--VAELSGGQRTKXXXXXXXXXXXX 181
L E+ Y D +VE GLGL P LD+D + LSGG+R++
Sbjct: 130 AALVEQYQARGGYEADVRVEVALHGLGL-PSLDRDRKLGTLSGGERSRLALAATLASSPE 188
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN LD+ + WL+++L + I ++HD F+D + I V +TRY
Sbjct: 189 LLLLDEPTNDLDDRAMEWLEDHLAGHRGTVIAVTHDRVFLDRLTTTILEVDSGSVTRYGN 248
Query: 242 GYAEF-----------ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKA 290
GY + R +EE +A+L+ + A++ + +V G +
Sbjct: 249 GYEGYLTAKAVERERRLREYEEWRAELDRNRGLITSNVARMDGIPRKMSLSVFGHGAYRR 308
Query: 291 REKKLAKM-------EIVETISEKP--KPHFDFKFSRKPSRLVFEAKDLVIGYNE-PLSS 340
R + M + V ++E P P F+ + EA++ V + ++
Sbjct: 309 RGRDHGAMVRIRNAKQRVAQLTENPVHAPADPLSFAARIDTAGPEAEEAVAELTDVRVAG 368
Query: 341 EI---NLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ-EIK 396
+ +L + G+++ G NG GKSTLL+ L G + G V G + + Q E
Sbjct: 369 RLAVDSLTIRPGERLLVTGPNGAGKSTLLRVLSGELEPDGGSVRVG--CRVGHLRQDETP 426
Query: 397 NPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
TVL + + L+ + + RV LS G++ ++ A+L++
Sbjct: 427 WAPGLTVLRAFAQGREGYLEDHAEKLLSLGLFSPSDLRRRVKDLSYGQRRRIEIARLVSD 486
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
++L+LDEPTNHL EEL++AL +Y G V++V+H+
Sbjct: 487 PMDLLLLDEPTNHLTPVLVEELEQALADYRGAVVVVTHD 525
Score = 75.7 bits (183), Expect = 8e-13
Identities = 56/216 (25%), Positives = 93/216 (42%), Gaps = 47/216 (21%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK 401
+ ++ G+K+ IG NG GKSTLLK L G + +G + + Y Q ++ P
Sbjct: 24 VGFSIKPGEKVGVIGDNGSGKSTLLKILAGRVEPDNGALTVVAPGGVGYLAQTLELPLDA 83
Query: 402 TVLD---------------------DLWDEYPSWNQAELRGALARVGLTAKQIESR---- 436
TV D +L + + ++ EL L R +Q ++R
Sbjct: 84 TVQDAVDLALSDLRELEAAMREAEAELGESDENGSERELSAGLQRYAALVEQYQARGGYE 143
Query: 437 ----------------------VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA 474
+ LSGGE+++L A + + +L+LDEPTN LD A
Sbjct: 144 ADVRVEVALHGLGLPSLDRDRKLGTLSGGERSRLALAATLASSPELLLLDEPTNDLDDRA 203
Query: 475 KEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
E L+ L + GTV+ V+H+ F + L + ++ +
Sbjct: 204 MEWLEDHLAGHRGTVIAVTHDRVFLDRLTTTILEVD 239
pir||S67863 ATP-binding protein OleB - Streptomyces antibioticus >gi|556427
(L36601) ATP-binding protein [Streptomyces antibioticus]
Length = 569
Score = 176 bits (443), Expect = 3e-43
Identities = 141/513 (27%), Positives = 238/513 (45%), Gaps = 32/513 (6%)
Query: 14 GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ 73
G R + + V+ + GE +G +G NG GKST + ++ G PD G+V+ GY+ Q
Sbjct: 43 GGRPLLDGVNQSVALGERVGIIGENGSGKSTLLRMLAGVDRPDGGQVLVRAPGGCGYLPQ 102
Query: 74 HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNS 133
L T ++A+ A L +E + + +A +E+ L G+L E +
Sbjct: 103 TPDLPPEDTVQDAIDHALAELRSLERGLREAEQALAGAEPEELEGLLGAYGDLLEAFEAR 162
Query: 134 DFYLIDAKVEETARGLGLTPLL-DKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYL 192
D Y DA+V+ GLGL + D+ + LSGG++ + TN+L
Sbjct: 163 DGYAADARVDAAMHGLGLAGITGDRRLGSLSGGEQARLNLACLLAASPQLMLLDEPTNHL 222
Query: 193 DEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHG--LGITRYSMGYAEFERVF 250
D + WL+ L+ + + +++SHD F++ V ++ V G + R+ GYA + +
Sbjct: 223 DVGALEWLEERLRAHRGSVLVVSHDRVFLERVATALWEVDGERRTVNRHGGGYAGYLQAK 282
Query: 251 EEKKAQLESLHNAQVAEQAKLKDFIARKKA---------NVATSGQAKAR--EKKLA--- 296
+ + E + + + A+ ++ +AR A N S Q R EK+++
Sbjct: 283 AAARRRWEQAYQDWLEDLARQRE-LARSAADHLATGPRRNTERSNQRHQRNVEKQISARV 341
Query: 297 --KMEIVETISEKPKPH----FDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINL---KVE 347
E V + E P P F+ + V L Y + + +++ V+
Sbjct: 342 RNAKERVRRLEENPVPRPPQPMRFRARVEGGGTVGRGGALAELYKVTVGTRLDVPSFTVD 401
Query: 348 SGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK-NPSQKTVLDD 406
G++I G NG GKSTLL+ L G + GE E+ + I + QE + Q+++L
Sbjct: 402 PGERILITGHNGAGKSTLLRVLAGDLAPDQGECERP--ERIGWLPQETEITDRQQSLLAA 459
Query: 407 LWDEYPSWNQAELRGALARVGL-TAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDE 465
P + E RGAL GL + + V LS G+ +L A+L+ +++L+LDE
Sbjct: 460 FAAGLPGIAE-EHRGALLGFGLFRPSALGTAVGDLSTGQLRRLALARLLRDPADLLLLDE 518
Query: 466 PTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
PTNHL E+L+ AL Y G +++VSH+ F
Sbjct: 519 PTNHLSPALVEDLEEALAHYRGALVVVSHDRMF 551
Score = 82.3 bits (200), Expect = 9e-15
Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 43/207 (20%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK 396
PL +N V G+++ IG NG GKSTLL+ L G+ G+V Y Q
Sbjct: 46 PLLDGVNQSVALGERVGIIGENGSGKSTLLRMLAGVDRPDGGQVLVRAPGGCGYLPQTPD 105
Query: 397 NPSQKTVLD---------------------------------------DLWDEYPSWN-- 415
P + TV D DL + + + +
Sbjct: 106 LPPEDTVQDAIDHALAELRSLERGLREAEQALAGAEPEELEGLLGAYGDLLEAFEARDGY 165
Query: 416 --QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
A + A+ +GL + R+ LSGGEQA+L A L+ +++LDEPTNHLDV
Sbjct: 166 AADARVDAAMHGLGLAGITGDRRLGSLSGGEQARLNLACLLAASPQLMLLDEPTNHLDVG 225
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYE 500
A E L+ L + G+VL+VSH+ F E
Sbjct: 226 ALEWLEERLRAHRGSVLVVSHDRVFLE 252
emb|CAA16001| (AL021184) hypothetical protein Rv1473 [Mycobacterium tuberculosis]
Length = 542
Score = 175 bits (440), Expect = 6e-43
Identities = 134/491 (27%), Positives = 230/491 (46%), Gaps = 25/491 (5%)
Query: 25 RLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTR 84
R+ G+ IG VG NG GK+T + I+ G + P G V ++ +GY+ Q +G
Sbjct: 25 RVQPGDRIGLVGRNGAGKTTTLRILAGEVEPYAGSV--TRAGEIGYLPQDPKVGDLDVLA 82
Query: 85 EALAEAFQYLFDIEAQINDTYMKMAEMS-EDEMNAALENVGELQEELDNSDFYLIDAKVE 143
+ + L + + MAE++ EDE + A+ G+L+E Y +++
Sbjct: 83 RDRVLSARGLDVLLTDLEKQQALMAEVADEDERDRAIRRYGQLEERFVALGGYGAESEAG 142
Query: 144 ETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXT-------NYLDEE 195
LGL +L + + LSGGQR + T N+LD +
Sbjct: 143 RICASLGLPERVLTQRLRTLSGGQRRRVELARILFAASESGAGNSTTLLLDEPTNHLDAD 202
Query: 196 HILWLKNYLKNYENAFILISHDVPFMDEVVNIIYH---------VHGLGITRYSMGYAEF 246
+ WL+++L+ + ++ISH+V + +VVN ++ V+ +G RY A
Sbjct: 203 SLGWLRDFLRLHTGGLVVISHNVDLVADVVNKVWFLDAVRGQVDVYNMGWQRYVDARATD 262
Query: 247 ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISE 306
E+ ++A E A A+ AKL A+ VA + ++ +A ++ +
Sbjct: 263 EQRRIRERANAERKAAALRAQAAKLG---AKATKAVAAQNMLRRADRMMAALDEERVADK 319
Query: 307 KPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLL 366
+ F + + LV G E + ++L ++ G ++ +G NG GK+TLL
Sbjct: 320 VARIKFPTPAACGRTPLVANGLGKTYGSLEVFTG-VDLAIDRGSRVVILGLNGAGKTTLL 378
Query: 367 KSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWDEYPSWNQAELRGALAR 425
+ L G+ G +E G I Y+ QE + TV +++ P + +LRG L
Sbjct: 379 RLLAGVEQPDTGVLEPGYGLRIGYFAQEHDTLDNDATVWENVRHAAPDAGEQDLRGLLGA 438
Query: 426 VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY 485
T Q+E LSGGE+ +L A L+ + +N+L+LDEPTN+LD ++E++ AL Y
Sbjct: 439 FMFTGPQLEQPAGTLSGGEKTRLALAGLVASTANVLLLDEPTNNLDPASREQVLDALRSY 498
Query: 486 PGTVLMVSHEP 496
G V++V+H+P
Sbjct: 499 RGAVVLVTHDP 509
Score = 65.2 bits (156), Expect = 1e-09
Identities = 58/217 (26%), Positives = 97/217 (43%), Gaps = 57/217 (26%)
Query: 343 NLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN----- 397
+L+V+ G +I +G NG GK+T L+ L G + G V + +I Y Q+ K
Sbjct: 23 DLRVQPGDRIGLVGRNGAGKTTTLRILAGEVEPYAGSVTRAG--EIGYLPQDPKVGDLDV 80
Query: 398 -------------------PSQKTVLDDLWDE------YPSWNQAELR-------GA--- 422
Q+ ++ ++ DE + Q E R GA
Sbjct: 81 LARDRVLSARGLDVLLTDLEKQQALMAEVADEDERDRAIRRYGQLEERFVALGGYGAESE 140
Query: 423 ----LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT-------ESNILILDEPTNHLD 471
A +GL + + R+ LSGG++ ++ A+++ S L+LDEPTNHLD
Sbjct: 141 AGRICASLGLPERVLTQRLRTLSGGQRRRVELARILFAASESGAGNSTTLLLDEPTNHLD 200
Query: 472 VDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVIN 508
D+ L+ L + G ++++SH + LV+DV+N
Sbjct: 201 ADSLGWLRDFLRLHTGGLVVISHNVD----LVADVVN 233
ref|NP_010953.1|YER036C| Yer036cp >gi|731453|sp|P40024|YEM6_YEAST PROBABLE ATP-DEPENDENT
TRANSPORTER YER036C >gi|1077646|pir||S50539 hypothetical
protein YER036c - yeast (Saccharomyces cerevisiae)
>gi|603269 (U18796) Yer036cp [Saccharomyces cerevisiae]
Length = 610
Score = 173 bits (434), Expect = 3e-42
Identities = 141/524 (26%), Positives = 233/524 (43%), Gaps = 30/524 (5%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+ + ++S F + + +D L G G +G NG GKSTF+ + P +
Sbjct: 82 IKLSSVSLLFHGKVLIQDSGLELNYGRRYGLLGENGCGKSTFLKALATREYPIPEHI--- 138
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV 123
+ +D+ A + + EA L IE + T ++ SE LE +
Sbjct: 139 ---DIYLLDEPAEPSELSALDYVVTEAQHELKRIEDLVEKTILEDGPESE-----LLEPL 190
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
E + LD F +++ GLG + K ++SGG + +
Sbjct: 191 YERMDSLDPDTF---ESRAAIILIGLGFNKKTILKKTKDMSGGWKMRVALAKALFVKPTL 247
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
T +LD E +WL+ YLK ++ +L+SH F++ V + + +T Y
Sbjct: 248 LLLDDPTAHLDLEACVWLEEYLKRFDRTLVLVSHSQDFLNGVCTNMIDMRAQKLTAYGGN 307
Query: 243 YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVE 302
Y + + E + +N Q E +K FIA QAK+R+K L KME
Sbjct: 308 YDSYHKTRSELETNQMKQYNKQQEEIQHIKKFIASAGTYANLVKQAKSRQKILDKMEADG 367
Query: 303 TISEK-PKPHFDFKFSR----KPSRLVFEAKDLVIGY----NEPLSSEINLKVESGQKIA 353
+ P F F+F + P L F+ D+ Y +E L +N V+ +IA
Sbjct: 368 LVQPVVPDKVFSFRFPQVERLPPPVLAFD--DISFHYESNPSENLYEHLNFGVDMDSRIA 425
Query: 354 FIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQ--KTVLDDLWDEY 411
+G NG+GKSTLLK + G + G V + + Y Q ++ K+ L+ + D+Y
Sbjct: 426 LVGPNGVGKSTLLKIMTGELTPQSGRVSRHTHVKLGVYSQHSQDQLDLTKSALEFVRDKY 485
Query: 412 PSWNQ--AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
+ +Q RG L R GLT + ++ LS G+++++ FA L + N+L+LDEPTN
Sbjct: 486 SNISQDFQFWRGQLGRYGLTGEGQTVQMATLSEGQRSRVVFALLALEQPNVLLLDEPTNG 545
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
LD+ + L A+ E+ G V++VSH+ + + D+ E T
Sbjct: 546 LDIPTIDSLADAINEFNGGVVVVSHDFRLLDKIAQDIFVVENKT 589
emb|CAB43392.1| (AL050291) hypothetical protein [Homo sapiens]
Length = 634
Score = 173 bits (433), Expect = 4e-42
Identities = 139/525 (26%), Positives = 236/525 (44%), Gaps = 35/525 (6%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+++ NLS F + + D L G G +G NG GKS ++ I VP
Sbjct: 86 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVP-------I 138
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEM---NAAL 120
+H Y + KT + E DT M E + + +A
Sbjct: 139 PEHIDIYHLTREMPPSDKTPLHCVMEV------------DTERAMLEKEAERLAHEDAEC 186
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXX 179
E + EL E L+ D + + GLG TP + K + + SGG R +
Sbjct: 187 EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIR 246
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD + +WL+ LK ++ +L+SH F++ V I H+H + Y
Sbjct: 247 PFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 306
Query: 240 SMGYAEFERV-FEEKKAQLESLHNAQVAEQAKLKDFIAR-KKANVATSGQAKAREKKLAK 297
+ Y ++ + E ++ Q++ H Q + A +K++IAR + + QA+++EK L K
Sbjct: 307 TGNYDQYVKTRLELEENQMKRFHWEQ-DQIAHMKNYIARFGHGSAKLARQAQSKEKTLQK 365
Query: 298 M---EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP---LSSEINLKVESGQK 351
M + E + F F K V +++ Y + + + + ++ +
Sbjct: 366 MMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTR 425
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTV--LDDLWD 409
+A +G NG GKSTLLK L G + DG + K + I Y Q ++ + L+ +
Sbjct: 426 VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMK 485
Query: 410 EYPSWNQ-AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
YP + E+R + R GLT KQ S + LS G++ ++ A L ++L LDEPTN
Sbjct: 486 CYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTN 545
Query: 469 HLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
HLD++ + L A+ E+ G +++VSH+ + + ++ CE+ T
Sbjct: 546 HLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQT 590
Score = 50.0 bits (117), Expect = 5e-05
Identities = 59/280 (21%), Positives = 105/280 (37%), Gaps = 54/280 (19%)
Query: 3 ILNVKNLSHGF--GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
++ V+N+S + I+ ++ F + + VG NG GKST + ++TG L+P +G +
Sbjct: 395 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI 454
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
++G QH Q D++ + MK
Sbjct: 455 RKHSHVKIGRYHQH----------------LQEQLDLDLSPLEYMMKC------------ 486
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKD----VAELSGGQRTKXXXXXXX 176
E++E+ EE + +G L K + LS GQ+ +
Sbjct: 487 --YPEIKEK-------------EEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLA 531
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TN+LD E I L + + +E +L+SHD + +V I+ I
Sbjct: 532 WQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTI 591
Query: 237 TRYS---MGYAEF--ERVFEEKKAQLESLHNAQVAEQAKL 271
T++ + Y E ++ +E+ + HN A L
Sbjct: 592 TKWPGDILAYKEHLKSKLVDEEPQLTKRTHNVCTLTLASL 631
emb|CAA06290| (AJ005016) ABC transporter [Homo sapiens]
Length = 550
Score = 173 bits (433), Expect = 4e-42
Identities = 139/525 (26%), Positives = 236/525 (44%), Gaps = 35/525 (6%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+++ NLS F + + D L G G +G NG GKS ++ I VP
Sbjct: 13 VHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKREVP-------I 65
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEM---NAAL 120
+H Y + KT + E DT M E + + +A
Sbjct: 66 PEHIDIYHLTREMPPSDKTPLHCVMEV------------DTERAMLEKEAERLAHEDAEC 113
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXX 179
E + EL E L+ D + + GLG TP + K + + SGG R +
Sbjct: 114 EKLMELYERLEELDADKAEMRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIR 173
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD + +WL+ LK ++ +L+SH F++ V I H+H + Y
Sbjct: 174 PFMLLLDEPTNHLDLDACVWLEEELKTFKRILVLVSHSQDFLNGVCTNIIHMHNKKLKYY 233
Query: 240 SMGYAEFERV-FEEKKAQLESLHNAQVAEQAKLKDFIAR-KKANVATSGQAKAREKKLAK 297
+ Y ++ + E ++ Q++ H Q + A +K++IAR + + QA+++EK L K
Sbjct: 234 TGNYDQYVKTRLELEENQMKRFHWEQ-DQIAHMKNYIARFGHGSAKLARQAQSKEKTLQK 292
Query: 298 M---EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP---LSSEINLKVESGQK 351
M + E + F F K V +++ Y + + + + ++ +
Sbjct: 293 MMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNNLEFGIDLDTR 352
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTV--LDDLWD 409
+A +G NG GKSTLLK L G + DG + K + I Y Q ++ + L+ +
Sbjct: 353 VALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMK 412
Query: 410 EYPSWNQ-AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
YP + E+R + R GLT KQ S + LS G++ ++ A L ++L LDEPTN
Sbjct: 413 CYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTN 472
Query: 469 HLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
HLD++ + L A+ E+ G +++VSH+ + + ++ CE+ T
Sbjct: 473 HLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQT 517
Score = 49.6 bits (116), Expect = 6e-05
Identities = 57/271 (21%), Positives = 103/271 (37%), Gaps = 54/271 (19%)
Query: 3 ILNVKNLSHGF--GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
++ V+N+S + I+ ++ F + + VG NG GKST + ++TG L+P +G +
Sbjct: 322 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI 381
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
++G QH Q D++ + MK
Sbjct: 382 RKHSHVKIGRYHQH----------------LQEQLDLDLSPLEYMMKC------------ 413
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKD----VAELSGGQRTKXXXXXXX 176
E++E+ EE + +G L K + LS GQ+ +
Sbjct: 414 --YPEIKEK-------------EEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLA 458
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TN+LD E I L + + +E +L+SHD + +V I+ I
Sbjct: 459 WQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTI 518
Query: 237 TRYS---MGYAEF--ERVFEEKKAQLESLHN 262
T++ + Y E ++ +E+ + HN
Sbjct: 519 TKWPGDILAYKEHLKSKLVDEEPQLTKRTHN 549
gi|2522534 (AF027302) TNF-alpha stimulated ABC protein [Homo sapiens]
Length = 807
Score = 173 bits (433), Expect = 4e-42
Identities = 133/523 (25%), Positives = 238/523 (45%), Gaps = 45/523 (8%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
+HG + +F + ++ G G VG NG+GK+T + I + + V
Sbjct: 275 AHG---KELFVNADLYIVAGRRYGLVGPNGKGKTTLLKHIANRALSIPPNI------DVL 325
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+Q V + + L + L +E + ++ E + A E + ++ EE
Sbjct: 326 LCEQEVVADETPAVQAVLRADTKRLKLLEEE-----RRLQGQLEQGDDTAAERLEKVYEE 380
Query: 130 LDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
L + +AK GLG P + ++ + SGG R +
Sbjct: 381 LRATGAAAAEAKARRILAGLGFDPEMQNRPTQKFSGGWRMRVSLARALFMEPTLLMLDEP 440
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFER 248
TN+LD ++WL NYL+ + +++SHD F+D+V I H+ + Y Y F++
Sbjct: 441 TNHLDLNAVIWLNNYLQGWRKTLLIVSHDQGFLDDVCTDIIHLDAQRLHYYRGNYMTFKK 500
Query: 249 VFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAK----AREKKLAKMEIVETI 304
++++K+ +L + Q + KLK+ A K+ Q K +++K + E
Sbjct: 501 MYQQKQKELLKQYEKQ---EKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEES 557
Query: 305 SEKPK---------PHFDFKFSRKPSRLVFEAKDLVIGY--NEPLSSEINLKVESGQKIA 353
E P+ F F S V + GY +PL ++ ++ +I
Sbjct: 558 QEAPELLKRPKEYTVRFTFPDPPPLSPPVLGLHGVTFGYQGQKPLFKNLDFGIDMDSRIC 617
Query: 354 FIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYP- 412
+G NG+GKSTLL L G + GE+ K + I ++ Q+ +++ +++ EY
Sbjct: 618 IVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQY---AEQLRMEETPTEYLQ 674
Query: 413 ---SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
+ + R L R GL + ++ LSGG++A++ FA+L E ++LILDEPTN+
Sbjct: 675 RGFNLPYQDARKCLGRFGLESHAHTIQICKLSGGQKARVVFAELACREPDVLILDEPTNN 734
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEW 512
LD+++ + L A+ EY G V++VSH+ L+++ NC+ W
Sbjct: 735 LDIESIDALGEAINEYKGAVIVVSHDAR----LITET-NCQLW 772
pir||S47441 tranport protein ertX - Saccharopolyspora erythraea
>gi|530357|emb|CAA56726| (X80735) putative ABC
tranporter [Saccharopolyspora erythraea]
Length = 481
Score = 166 bits (416), Expect = 4e-40
Identities = 142/529 (26%), Positives = 239/529 (44%), Gaps = 74/529 (13%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
++++N++++S +G R + ++VS + + IG VG NG GK+T + +++G++ D G+V
Sbjct: 2 VNLINLESVSKSYGVRPLLDEVSLGVGASDRIGVVGLNGGGKTTLLEVLSGSVDRDSGRV 61
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
S+ R+ + Q L +G T R A+ + + + E
Sbjct: 62 SHSRDLRMAVVTQRTELPEGSTVRNAVLDPHGFTAEHE---------------------- 99
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXX 179
+ DAKV GLG+T L LD VA+ SGG+R +
Sbjct: 100 ---------------WAADAKVRSVLTGLGMTSLGLDTPVADFSGGERRRVALAALVREL 144
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRY 239
TN+LD E + WL ++L A ++++HD F+D V N + V + +Y
Sbjct: 145 DLLVLDEP-TNHLDVEGVRWLADHLLQRRCALVIVTHDRWFLDTVCNRTWEVVQGRVEQY 203
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLA-KM 298
GY R + A+ ++ SG AKAR K ++
Sbjct: 204 EGGYRLGLRPRRAGPGWRSRPRRSARTSPAR---------SSRGCSGGAKARTSKPRFRV 254
Query: 299 EIVET-ISEKPKPHFDFKF----SRKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKI 352
E E I++ P P + R+ + V E +++ + + L ++ + G +I
Sbjct: 255 EAAEALIADVPPPRDTVELVSFAKRRLGKTVLELENVDLRIADRVLLEDLTWLIGPGDRI 314
Query: 353 AFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWDEY 411
+G NG GK+TLL+ L G + G +G +A+ QE+ + P VL+ + D
Sbjct: 315 GLVGVNGSGKTTLLRLLAGERDADAGRRIEGKTVRLAHLTQELHDLPGDWRVLEAIEDV- 373
Query: 412 PSWNQAELRGALARVGLTAKQIESR-----------VYVLSGGEQAKLRFAKLMNTESNI 460
AE R L + LTA Q+ R V LSGGE+ ++ A+L+ E N+
Sbjct: 374 -----AE-RVTLDKYELTASQLGERFGFGKGRQWTPVSDLSGGERRSVQLARLLMAEPNV 427
Query: 461 LILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINC 509
L+LDEPTN LD+D ++L+ L +PGT+++VSH+ E + C
Sbjct: 428 LVLDEPTNDLDIDTLQQLEDLLDTWPGTLVVVSHDRYLVERVCDTSTRC 476
gb|AAF10677.1|AE001960_5 (AE001960) ABC transporter, ATP-binding protein, EF-3 family
[Deinococcus radiodurans]
Length = 757
Score = 165 bits (414), Expect = 7e-40
Identities = 139/520 (26%), Positives = 222/520 (41%), Gaps = 54/520 (10%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
++L+ + ++ +G+R + DVS + GE + +G NG GK+T + ++TG DEG+V
Sbjct: 3 TLLSAEKVTVVYGERTVLADVSLSVQSGERVALLGRNGAGKTTLLRVLTGEQKADEGEVW 62
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQY------LFDIEAQINDTYMKMAEMSEDE 115
+ RV + QH G+T R+ + A Y L +EA + D
Sbjct: 63 RADGLRVAVLAQHHAWPPGRTVRDLVDAAHPYRELEAELLSLEADLGDP----------- 111
Query: 116 MNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXX 175
A L EL LD ++ Y ++ L LT L ++ A LSGG+RT+
Sbjct: 112 --ARLAAWTELHARLDAAEAYAWPSRARRILGTLDLTRFLTREAATLSGGERTRLALALA 169
Query: 176 XXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG 235
TN+LD WL+ +L + +L SHD F+D V + G
Sbjct: 170 LAREPDLLVLDEPTNHLDIRMREWLEGWLLAFRGGVLLTSHDRDFLDAVATRSLWLDGGE 229
Query: 236 ITRYSMGY--AEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREK 293
Y+ GY A +R E + + + Q AE R + +V Q R +
Sbjct: 230 AQDYAGGYSRARAQRDLERRTRTRAARLSGQEAE---------RLQGSVDWLDQRGKRSR 280
Query: 294 KLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEIN---------L 344
L ++E P P + L A+ V+ + E LS
Sbjct: 281 ALKTRAGRVQLTEAPLPERQIRMRL----LAGTARARVVAWGEHLSKSYGERVILQGAAF 336
Query: 345 KVESGQKIAFIGSNGIGKSTLLKSLMGL------IPSLDGEVEKGNFQDIAYYEQEIKNP 398
K+ G ++A +G+NG GK+TL++ L G +P+ V G +A +Q
Sbjct: 337 KLRQGDRVALMGANGTGKTTLMRLLAGATFPDETVPAPVLRVASGVM--VASLDQTWHG- 393
Query: 399 SQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTES 458
T + L ++ + L R G T LSGGE+A+ A + +
Sbjct: 394 --LTPGEGLHAQFERRFGRQTNALLGRAGFTQADWPKTPEQLSGGERARAGLALVSGLRA 451
Query: 459 NILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
++L+LDEPTNHLDV+A L+ A+ Y G V++V+H+ F
Sbjct: 452 DLLLLDEPTNHLDVEALTALEAAVHAYAGAVVIVTHDRRF 491
Score = 87.4 bits (213), Expect = 3e-16
Identities = 62/218 (28%), Positives = 107/218 (48%), Gaps = 38/218 (17%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ A+ + + Y E + ++++L V+SG+++A +G NG GK+TLL+ L G + +GEV +
Sbjct: 4 LLSAEKVTVVYGERTVLADVSLSVQSGERVALLGRNGAGKTTLLRVLTGEQKADEGEVWR 63
Query: 383 GNFQDIAYYEQEIKNPSQKTVLD--------------------DLWD--EYPSWNQ---- 416
+ +A Q P +TV D DL D +W +
Sbjct: 64 ADGLRVAVLAQHHAWPPGRTVRDLVDAAHPYRELEAELLSLEADLGDPARLAAWTELHAR 123
Query: 417 ----------AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEP 466
+ R L + LT + + LSGGE+ +L A + E ++L+LDEP
Sbjct: 124 LDAAEAYAWPSRARRILGTLDLT-RFLTREAATLSGGERTRLALALALAREPDLLVLDEP 182
Query: 467 TNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVS 504
TNHLD+ +E L+ L+ + G VL+ SH+ +F + + +
Sbjct: 183 TNHLDIRMREWLEGWLLAFRGGVLLTSHDRDFLDAVAT 220
emb|CAA99835.1| (Z75537) Similarity to Yeast ATP-dependent transporter
(SW:YEM6_YEAST); cDNA EST EMBL:C09155 comes from this
gene; cDNA EST yk259a9.3 comes from this gene; cDNA EST
yk259a9.5 comes from this gene; cDNA EST yk453c2.3 comes
fro...
Length = 622
Score = 165 bits (413), Expect = 9e-40
Identities = 133/514 (25%), Positives = 241/514 (46%), Gaps = 38/514 (7%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGT--LVPDEGKVI 61
+ ++N + +F+ S ++ G G VG NG GK+T + I +P ++
Sbjct: 80 IKIENFDISAQGKLLFDKASLTIVYGRRYGLVGPNGMGKTTLLKHIGARKLAIPSHIDLL 139
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+ ++ + A+ K+ ++ LA L + EA++ M+E+ E + AA E
Sbjct: 140 YCEQE-IQVDSTSAIDTVVKSDKKRLA-----LLEEEAKL------MSEIEEGKTEAA-E 186
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ E+ +EL + + + GLG + + +K + SGG R +
Sbjct: 187 RMKEVADELRDIGADSAEPRARRILAGLGFSKEMQEKPCTDFSGGWRMRISLARALFLEP 246
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
TN+LD ++WL NYL+ ++ +++SHD F+D V I H+ + Y
Sbjct: 247 TLLMLDEPTNHLDLNAVIWLDNYLQTWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHTYR 306
Query: 241 MGYAEF-----------ERVFEEKKAQLESLHNA-----QVAEQAKLKDFIARKKANVAT 284
Y F E+ F++++ QL+++ Q EQ K + KK
Sbjct: 307 GNYTLFKKQYAQDMQVHEKNFDQQQKQLKAMKKEGKSAKQAEEQVKQQMANKAKKGGKKN 366
Query: 285 SGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP-LSSEIN 343
+G+ + A E+++ E F F + K + V D+ GY + L ++N
Sbjct: 367 AGKVNDDDDAGAP-ELLQRRKEY-SVKFQFPETTKLNPPVLGLHDVNFGYGKDVLFKKLN 424
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQK 401
V+ +IA +G NG+GKSTLLK L+G I DGE+ K I +++Q ++
Sbjct: 425 FGVDMDSRIAIVGPNGVGKSTLLKLLIGKIDPNDGELRKHRTLRIGWFDQHANEALNGEQ 484
Query: 402 TVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
T ++ L ++ + + E R L GL A ++ LSGG+++++ L +I+
Sbjct: 485 TPVEFLCTKF-NIDYQEARKQLGTTGLAAHAHTVKIKDLSGGQKSRVALCNLALGGPDII 543
Query: 462 ILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
ILDEPTN+LD+++ + L A+ ++ G V+MV+H+
Sbjct: 544 ILDEPTNNLDIESIDALAEAIRDFNGGVVMVTHD 577
Score = 74.5 bits (180), Expect = 2e-12
Identities = 58/205 (28%), Positives = 99/205 (48%), Gaps = 32/205 (15%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMG---LIPS------LDGEVE------- 381
L + +L + G++ +G NG+GK+TLLK + IPS + E++
Sbjct: 94 LFDKASLTIVYGRRYGLVGPNGMGKTTLLKHIGARKLAIPSHIDLLYCEQEIQVDSTSAI 153
Query: 382 ----KGNFQDIAYYEQEIKNPSQ------------KTVLDDLWDEYPSWNQAELRGALAR 425
K + + +A E+E K S+ K V D+L D + R LA
Sbjct: 154 DTVVKSDKKRLALLEEEAKLMSEIEEGKTEAAERMKEVADELRDIGADSAEPRARRILAG 213
Query: 426 VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY 485
+G + + E SGG + ++ A+ + E +L+LDEPTNHLD++A L L +
Sbjct: 214 LGFSKEMQEKPCTDFSGGWRMRISLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQTW 273
Query: 486 PGTVLMVSHEPEFYEGLVSDVINCE 510
T+L+VSH+ F + + +D+I+ +
Sbjct: 274 KKTLLIVSHDQGFLDSVCTDIIHLD 298
Score = 60.9 bits (145), Expect = 2e-08
Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 59/272 (21%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L + +++ G+G +F+ ++F + I VG NG GKST + ++ G + P++G++
Sbjct: 404 VLGLHDVNFGYGKDVLFKKLNFGVDMDSRIAIVGPNGVGKSTLLKLLIGKIDPNDGELRK 463
Query: 63 SKKHRVGYMDQHA--VLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
+ R+G+ DQHA L +T E L F
Sbjct: 464 HRTLRIGWFDQHANEALNGEQTPVEFLCTKF----------------------------- 494
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLL----DKDVAELSGGQRTKXXXXXXX 176
N D+ +E + LG T L + +LSGGQ+++
Sbjct: 495 -----------NIDY-------QEARKQLGTTGLAAHAHTVKIKDLSGGQKSRVALCNLA 536
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TN LD E I L ++++ ++++HD + ++ V GI
Sbjct: 537 LGGPDIIILDEPTNNLDIESIDALAEAIRDFNGGVVMVTHDERLVVRTDCNLWVVENQGI 596
Query: 237 TRYSMGYAEFERVFEEKKAQLESLHNAQVAEQ 268
+ ++ KK L++L A V+++
Sbjct: 597 DEIDGDFEDY------KKEVLDALGEALVSKK 622
gi|2661139 (U59234) ORF510; hypothetical [Synechococcus PCC7942]
Length = 510
Score = 165 bits (413), Expect = 9e-40
Identities = 130/503 (25%), Positives = 236/503 (46%), Gaps = 25/503 (4%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+++ ++N+S +G + + + SF + + IG +G NG GKST + I+ G D G +
Sbjct: 1 MALMTLRNVSKDYGLKVLLQSASFSVGDRDRIGLIGRNGSGKSTLLRILAGLETADSGDI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREAL----AEAFQYLFDIEAQINDTYMKMAEMSEDEM 116
R Y+ Q L +T E + E Q + D EA I++ ++A +
Sbjct: 61 QRQSGLRSVYVPQDPQLDPERTVLEQVFADAGEQLQLVRDYEA-ISE---QLATAEGEAA 116
Query: 117 NAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXX 176
A + + L ++LD D + ++ + + LG+ + V +LSGG R +
Sbjct: 117 EALMARLTSLSQQLDAQDAWGLETQAKIVLSRLGIHNFQQR-VGDLSGGYRKRLGLASAL 175
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TN+LD + + WL+++L + A +LI+HD F+D V N I + +
Sbjct: 176 LADPELLLLDEPTNHLDADSVEWLQSFLSKFRGALVLITHDRYFLDRVTNRILDLDRGEL 235
Query: 237 TRYSMGYAEF-ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKL 295
+ Y YA + ++ E++ + S H Q + +L ++ A S + KAR +++
Sbjct: 236 SAYDGNYAYYLQKKAEQEASAASSAHKFQGVLRRELAWL---QRGPKARSTKQKARIQRI 292
Query: 296 AKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAF 354
+M E + S++ + V +++ + + L + + +V +++
Sbjct: 293 EEMRSQEVRGAAGRVEI-AAASQRLGKTVVRLENVSKSFGDRQLIQDFSYEVSPEERLGI 351
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ-----EIKNPSQKTVLDDLWD 409
IG NG+GKSTLL + G + G+V +G+ Y +Q E+ Q+ +D L +
Sbjct: 352 IGPNGVGKSTLLNLMTGQLSPDQGKVVQGSTVCFGYVDQQAEGLELAAQKQQRPIDYLRE 411
Query: 410 E---YPSWNQAELRGA--LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILD 464
E P N +L + L R Q + + LSGGE+ +L +++ T N+LILD
Sbjct: 412 EGEYLPLGNGEKLSASQLLERFLFPPAQQYAPIASLSGGERRRLYLLRILMTAPNVLILD 471
Query: 465 EPTNHLDVDAKEELKRALIEYPG 487
EPTN LD+ L+ L ++PG
Sbjct: 472 EPTNDLDIQTLAVLEDYLEDFPG 494
Score = 75.3 bits (182), Expect = 1e-12
Identities = 52/216 (24%), Positives = 99/216 (45%), Gaps = 45/216 (20%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L + V +I IG NG GKSTLL+ L GL + G++++ + Y Q+ +
Sbjct: 18 LLQSASFSVGDRDRIGLIGRNGSGKSTLLRILAGLETADSGDIQRQSGLRSVYVPQDPQL 77
Query: 398 PSQKTVLDDLW------------------------------------------DEYPSWN 415
++TVL+ ++ D +W
Sbjct: 78 DPERTVLEQVFADAGEQLQLVRDYEAISEQLATAEGEAAEALMARLTSLSQQLDAQDAWG 137
Query: 416 -QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA 474
+ + + L+R+G+ + RV LSGG + +L A + + +L+LDEPTNHLD D+
Sbjct: 138 LETQAKIVLSRLGI--HNFQQRVGDLSGGYRKRLGLASALLADPELLLLDEPTNHLDADS 195
Query: 475 KEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
E L+ L ++ G +++++H+ F + + + +++ +
Sbjct: 196 VEWLQSFLSKFRGALVLITHDRYFLDRVTNRILDLD 231
gi|153198 (M80346) carbomycin resistance protein [Streptomyces
thermotolerans]
Length = 551
Score = 165 bits (413), Expect = 9e-40
Identities = 139/524 (26%), Positives = 240/524 (45%), Gaps = 35/524 (6%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L + +++ + D + + + F + GE +G +G NG GKST + +I G PD G V
Sbjct: 6 LALHDITKRYQDHVVLDRIGFTIKPGEKVGVIGDNGSGKSTLIKLIAGREQPDNGAVTVV 65
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEM-----SEDEMNA 118
VGY+ Q L T ++A+ A L ++E + T ++AE + E+
Sbjct: 66 APGGVGYLAQTLELPLEATVQDAVDLALADLRELEEGMRRTEAELAERPYQTGQDPELAG 125
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXX 177
LE+ L + Y D++VE GLGL L + + LSGG+R++
Sbjct: 126 LLESYAALVDRYQARGGYEADSRVEIALHGLGLPGLERGRRLGTLSGGERSRLALAATLA 185
Query: 178 XXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGIT 237
TN LD+ + WL+ +L+ ++ + ++HD F+D + I + +
Sbjct: 186 SEPELLLLDEPTNDLDDRAVDWLEEHLRKHKGTVVAVTHDRLFLDRLTTTILEIDSGKVM 245
Query: 238 RYSMGY--------AEFER---VFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSG 286
RY GY AE +R +E+ +A+L+ + + A+L + V +G
Sbjct: 246 RYGNGYEGYLAAKAAERQRRLLEYEQWRAELDRSRDLIASNVARLDAIPRKLPFAVFGAG 305
Query: 287 QAKAREKKLAKM-------EIVETISEKP--KPHFDFKFSRKPSRLVFEAKDLV-----I 332
Q + R + M E V ++E P P F+ + + ++++ V +
Sbjct: 306 QFRMRGRGHGAMVRIRNAKERVARLTENPVAPPPEPLTFTAEITTEAAQSRETVAELTGV 365
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYE 392
+ LS + +L + G+++ G NG GK+TLL+ L G + G + E
Sbjct: 366 RVGDRLSVD-SLHLGPGERLLVTGPNGAGKTTLLRVLSGELEPDSGSLLVSGRVGHLRQE 424
Query: 393 QEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGL-TAKQIESRVYVLSGGEQAKLRFA 451
Q P TVL + + + E AL +GL + + RV LS G++ ++ A
Sbjct: 425 QTPWRPGM-TVL-QAFSSGRAGDIDEHTEALLSLGLFSPDDLRQRVQDLSYGQRRRIELA 482
Query: 452 KLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
+L+ ++L+LDEPTNHL EEL+ AL Y GTV++V+H+
Sbjct: 483 RLVTEPVDLLLLDEPTNHLSPALVEELEEALTGYQGTVVVVTHD 526
Score = 74.1 bits (179), Expect = 2e-12
Identities = 60/217 (27%), Positives = 95/217 (43%), Gaps = 48/217 (22%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK 401
I ++ G+K+ IG NG GKSTL+K + G +G V + Y Q ++ P +
Sbjct: 24 IGFTIKPGEKVGVIGDNGSGKSTLIKLIAGREQPDNGAVTVVAPGGVGYLAQTLELPLEA 83
Query: 402 TVLD-------DLWD---------------EYPSWNQAELRG------------------ 421
TV D DL + Y + EL G
Sbjct: 84 TVQDAVDLALADLRELEEGMRRTEAELAERPYQTGQDPELAGLLESYAALVDRYQARGGY 143
Query: 422 --------ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
AL +GL + R+ LSGGE+++L A + +E +L+LDEPTN LD
Sbjct: 144 EADSRVEIALHGLGLPGLERGRRLGTLSGGERSRLALAATLASEPELLLLDEPTNDLDDR 203
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
A + L+ L ++ GTV+ V+H+ F + L + ++ +
Sbjct: 204 AVDWLEEHLRKHKGTVVAVTHDRLFLDRLTTTILEID 240
gb|AAF19673.1|AC009519_7 (AC009519) F1N19.11 [Arabidopsis thaliana]
Length = 1270
Score = 163 bits (409), Expect = 3e-39
Identities = 145/587 (24%), Positives = 239/587 (40%), Gaps = 87/587 (14%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTF-----MNIITGTLVPDEG 58
+++ N + G R + D S L G H G VG NG GK+TF M+ I G +P
Sbjct: 661 IHMDNFNVSVGGRDLIVDGSITLSFGRHYGLVGRNGTGKTTFLRYMAMHAIEG--IPTNC 718
Query: 59 KVIWSKKHRVGYMDQ--HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEM 116
+++ ++ VG VL + L E Q L + + + K ++D +
Sbjct: 719 QILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAK-QRETEEPTAKDGMPTKDTV 777
Query: 117 NAAL--ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXX 173
L + + E+ + LD D Y +A+ GL TP + K SGG R +
Sbjct: 778 EGDLMSQRLEEIYKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALA 837
Query: 174 XXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHG 233
TN+LD +LWL+ YL + FI++SH F++ VV I H+
Sbjct: 838 RALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQN 897
Query: 234 LGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLK-------------------DF 274
++ Y Y FER EE+ + + ++ ++ F
Sbjct: 898 QKLSTYKGNYDIFERTREEQVKNQQKAFESSERSRSHMQVSFLLLENELINSVSNSSLAF 957
Query: 275 IARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKF-SRKPSRLVFEAKDLVIG 333
I + + N + ++R K L ++ V+ + P F+F KP + D G
Sbjct: 958 IDKFRYNAKRASLVQSRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFG 1017
Query: 334 YN------------------------EPLSSE---------------------------- 341
Y PLS +
Sbjct: 1018 YPGGPLLFRNLNFGIDLDSRIASKKAPPLSLDYEITQMIHVYKPSSIICGNNKCSIKEHN 1077
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PS 399
NL + ++ A +G NGIGKST+LK + G + G V + +A + Q +
Sbjct: 1078 FNLYIWFSRRFAVVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDL 1137
Query: 400 QKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESN 459
L + YP + +LR L +G+T +Y LSGG+++++ FAK+ + +
Sbjct: 1138 SSNPLLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPH 1197
Query: 460 ILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
+L+LDEP+NHLD+DA E L + L+ + G + MVSH+ G V ++
Sbjct: 1198 LLLLDEPSNHLDLDAVEALIQGLVLFQGGICMVSHDEHLISGSVDEL 1244
Score = 62.1 bits (148), Expect = 1e-08
Identities = 35/96 (36%), Positives = 56/96 (57%), Gaps = 2/96 (2%)
Query: 417 AELRGA--LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA 474
AE R A LA + T + SGG + ++ A+ + E ++L+LDEPTNHLD+ A
Sbjct: 801 AEARAASILAGLSFTPEMQLKATNTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA 860
Query: 475 KEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L ++P T ++VSH EF +V+D+I+ +
Sbjct: 861 VLWLETYLTKWPKTFIVVSHAREFLNTVVTDIIHLQ 896
gb|AAF10056.1|AE001907_2 (AE001907) ABC transporter, ATP-binding protein, EF-3 family
[Deinococcus radiodurans]
Length = 649
Score = 162 bits (405), Expect = 8e-39
Identities = 139/537 (25%), Positives = 232/537 (42%), Gaps = 54/537 (10%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
++L + ++ +GD+ IF V+ L GE + +G NG GKST + ++ G PD G V
Sbjct: 111 NMLRAREVARRYGDQTIFAGVTLDLAAGERLALIGENGSGKSTLLRVLAGLDAPDAGHV- 169
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
++ RV + QH LG G + + + E + +AAL
Sbjct: 170 -TRTGRVSLLTQHTDLGAGHVLNAVTPPELR-------GARTAFEQATERLSEGSDAALT 221
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+ +E + Y A+ GL L D +LSGGQ +
Sbjct: 222 AFADAEERYRLAGGYDFGARANGVLAGLHLDA--GADAGQLSGGQLRRVMLARLLLSPAD 279
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENA---FILISHDVPFMDEVVNIIYHVHGLGITR 238
TN+LD + WL+ ++ A FIL SHD F+D V + +T
Sbjct: 280 LYLLDEPTNHLDADGAAWLEGWILAAAAAGAAFILASHDRAFLDAVATHTAELERGALTV 339
Query: 239 YSMGYAEFERV--------------FEEKKAQLESLHNAQVAEQAKLKDFIARKKANV-- 282
Y Y+ + ++ K+A LE + + F ++ NV
Sbjct: 340 YPGNYSAAMELKATLREAQQRDYAAYKRKRAALEQEKSRLKSAGRSADKFSHQRAGNVPL 399
Query: 283 ------------ATSGQAKAREKKLAKME---IVETISEKPKPHFDFKFSRKPSRLVFEA 327
+G+A++ E++L +++ + + ++ D + V
Sbjct: 400 LTAKNKAQDVANTLAGRARSMERQLERLDAGAVAKPFDDRRVLTLDLPPLPPGPQEVLTV 459
Query: 328 KDL-VIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE--KGN 384
+DL V + + S +NL V G ++A G NG GKSTLL++++ +P G V G
Sbjct: 460 RDLGVTREGQEVLSSVNLHVRRGDRVALTGPNGGGKSTLLRAVLSELPHT-GTVTWGAGL 518
Query: 385 FQDIA-YYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGG 443
+ +A + +E++ TV L D P+ +L A+VGL + + LSGG
Sbjct: 519 TRSVAGQHGEELRGLG--TVGGALLDANPALTPHQLHEIAAQVGLPGPL--AALATLSGG 574
Query: 444 EQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYE 500
++ +L A+L T + +L+LDEPTNHLD+ E L+ L+ +PGTVL+ SH+ E
Sbjct: 575 QRTRLSLARLSVTRAQVLLLDEPTNHLDLPMIEALEALLLAFPGTVLLASHDRRLLE 631
sp|P39115|EXPZ_BACSU NUCLEOTIDE BINDING PROTEIN EXPZ >gi|1881367|dbj|BAA19394|
(AB001488) PROBABLE ATP-BINDING TRANSPORT PROTEIN
[Bacillus subtilis] >gi|2632861|emb|CAB12368| (Z99106)
ATP-binding transport protein [Bacillus subtilis]
>gi|2632874|emb|CAB12380| (Z99107) ATP-binding transport
protein [Bacillus subtilis]
Length = 547
Score = 150 bits (375), Expect = 3e-35
Identities = 104/373 (27%), Positives = 184/373 (48%), Gaps = 33/373 (8%)
Query: 157 KDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISH 216
+D +LSGG++ K TN+LDE+ + +L LK+Y IL+SH
Sbjct: 99 RDFHQLSGGEKLKARLAKGLSEDADLLLLDEPTNHLDEKSLQFLIQQLKHYNGTVILVSH 158
Query: 217 DVPFMDEVVNIIYHVHGLGITRYS---MGYAEF--------ERVFEEKKAQLESLH---- 261
D F+DE I+ + + + GY +F +R +E+++ +E +
Sbjct: 159 DRYFLDEAATKIWSLEDQTLIEFKGNYSGYMKFREKKRLTQQREYEKQQKMVERIEAQMN 218
Query: 262 ---------NAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHF 312
+AQ ++ K++ R KA T Q K+++K+L K E+ + +E P +
Sbjct: 219 GLASWSEKAHAQSTKKEGFKEY-HRVKAK-RTDAQIKSKQKRLEK-ELEKAKAEPVTPEY 275
Query: 313 DFKFS----RKPSRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLK 367
+FS K + E +++ + E L N ++ G+K+A IG NG GK+TLL
Sbjct: 276 TVRFSIDTTHKTGKRFLEVQNVTKAFGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLN 335
Query: 368 SLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVG 427
++G + +G V +I Y QE+ + + ++L++ + ++ + +G
Sbjct: 336 IILGQ-ETAEGSVWVSPSANIGYLTQEVFDLPLEQTPEELFENETFKARGHVQNLMRHLG 394
Query: 428 LTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG 487
TA Q + +S GE+ K++ + E ++LILDEPTNHLD+ ++E+L+ L +Y G
Sbjct: 395 FTAAQWTEPIKHMSMGERVKIKLMAYILEEKDVLILDEPTNHLDLPSREQLEETLSQYSG 454
Query: 488 TVLMVSHEPEFYE 500
T+L VSH+ F E
Sbjct: 455 TLLAVSHDRYFLE 467
Score = 82.7 bits (201), Expect = 7e-15
Identities = 58/195 (29%), Positives = 96/195 (48%), Gaps = 35/195 (17%)
Query: 325 FEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN 384
+E KD + + +N V+ G I IG NG GKSTLL + + G++ + +
Sbjct: 12 YEVKD------QTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIHNDLAPAQGQILRKD 65
Query: 385 F------QDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVY 438
Q+ A Y + P++K +L+ W+ LR +
Sbjct: 66 IKLALVEQETAAYSFADQTPAEKKLLE-------KWH-VPLRD---------------FH 102
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
LSGGE+ K R AK ++ ++++L+LDEPTNHLD + + L + L Y GTV++VSH+ F
Sbjct: 103 QLSGGEKLKARLAKGLSEDADLLLLDEPTNHLDEKSLQFLIQQLKHYNGTVILVSHDRYF 162
Query: 499 YEGLVSDVINCEEWT 513
+ + + + E+ T
Sbjct: 163 LDEAATKIWSLEDQT 177
Score = 69.1 bits (166), Expect = 8e-11
Identities = 59/257 (22%), Positives = 98/257 (37%), Gaps = 45/257 (17%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V+N++ FG+R +F++ +F + GE + +G NG GK+T +NII G EG V S
Sbjct: 292 LEVQNVTKAFGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETA-EGSVWVS 350
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV 123
+GY+ Q +FD+ +
Sbjct: 351 PSANIGYLTQE-------------------VFDLPLE----------------------- 368
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ EEL ++ + V+ R LG T + + +S G+R K
Sbjct: 369 -QTPEELFENETFKARGHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDV 427
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
TN+LD L+ L Y + +SHD F+++ N + GI +
Sbjct: 428 LILDEPTNHLDLPSREQLEETLSQYSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLND 487
Query: 243 YAEFERVFEEKKAQLES 259
EE + +LE+
Sbjct: 488 VPSERNEREELRLKLET 504
Score = 48.8 bits (114), Expect = 1e-04
Identities = 20/59 (33%), Positives = 39/59 (65%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
I+ + N+S+ D+ +F+ V+ + +G+ IG +G NG GKST +++I L P +G+++
Sbjct: 4 IVTLTNVSYEVKDQTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIHNDLAPAQGQIL 62
emb|CAB58409.1| (AL122011) putative ABC transporter [Schizosaccharomyces pombe]
Length = 822
Score = 149 bits (373), Expect = 4e-35
Identities = 137/525 (26%), Positives = 238/525 (45%), Gaps = 43/525 (8%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V+ LS + + +D L+ G G + NG GKST ++ I L+P + +
Sbjct: 276 LQVEKLSVSAWGKLLIKDSELNLINGRRYGLIAPNGSGKSTLLHAIACGLIPTPSSLDF- 334
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE-MSEDEMNAALEN 122
Y+ + T EA+ + IN+ K E M ED ++ +N
Sbjct: 335 ------YLLDREYIPNELTCVEAVLD-----------INEQERKHLEAMMEDLLDDPDKN 377
Query: 123 VGEL---QEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXX 178
EL Q L + + D +V + RGL T ++ K ELSGG R +
Sbjct: 378 AVELDTIQTRLTDLETENSDHRVYKILRGLQFTDEMIAKRTNELSGGWRMRIALARILFI 437
Query: 179 XXXXXXXXXXTNYLDEEHILWLKNYLKN-YENAFILIS-HDVPFMDEVVNIIYHVHGLGI 236
TN+LD E + WL+ YL + E +LI+ H ++EV I H++ +
Sbjct: 438 KPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQDTLNEVCTDIIHLYHQKL 497
Query: 237 TRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFI--------ARKKANVATSGQA 288
YS Y F +V E+ QL Q + AKL++ + + KA V +
Sbjct: 498 DYYSGNYDTFLKVRAERDVQLAKKARQQEKDMAKLQNKLNMTGSEQQKKAKAKVKAMNKK 557
Query: 289 KAREKKLAKMEIVETISEKPKP-HFDFKFSRKPSRLVFEAKDLVIGYNEP----LSSEIN 343
++K+ K+ E I EK F+ PS + K + +N P + S++N
Sbjct: 558 LEKDKQSGKVLDEEIIQEKQLVIRFEDCGGGIPSPAI---KFQDVSFNYPGGPTIFSKLN 614
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNP--SQK 401
++ ++A +G NG GK+TL+K ++ + G V + + +A + Q + + +
Sbjct: 615 FGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRHHGLRLALFNQHMGDQLDMRL 674
Query: 402 TVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
+ ++ L ++ + + E+R + R GLT K + LS G++ ++ FA L T+ +IL
Sbjct: 675 SAVEWLRTKFGNKPEGEMRRIVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHIL 734
Query: 462 ILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
+LDEPTN LD+D + L AL + G V+ ++H+ + + ++
Sbjct: 735 LLDEPTNALDIDTIDALADALNNFDGGVVFITHDFRLIDQVAEEI 779
gi|2769708 (U82085) pristinamycin resistance protein VgaB [Staphylococcus
aureus]
Length = 552
Score = 145 bits (363), Expect = 7e-34
Identities = 143/534 (26%), Positives = 229/534 (42%), Gaps = 90/534 (16%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+++KN+ + D+ I ++ G+ IG VG NG GK+T + II G + DEG +I S
Sbjct: 4 IDMKNVKKYYADKLILNIKELKIYSGDKIGIVGKNGVGKTTLLKIIKGLIEIDEGNIIIS 63
Query: 64 KKHRVGYMDQ----HAVLGKGKTTREALAEAFQYLFDIEAQIND-------TYMKMAEMS 112
+K + Y+ Q H+ + GK + +F +E + ND T K+AE
Sbjct: 64 EKTTIKYISQLEEPHSKIIDGK---------YASIFQVENKWNDNMSGGEKTRFKLAEGF 114
Query: 113 EDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDK--------DVAELSG 164
+D+ + L V E LD LI +E R L D+ + E+
Sbjct: 115 QDQCSLML--VDEPTSNLDIEGIELITNTFKE-YRDTFLVVSHDRIFLDQVCTKIFEIEN 171
Query: 165 GQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEV 224
G TNY++++ +L L+ + YE
Sbjct: 172 G--------------YIREFIGNYTNYIEQKEML-LRKQQEEYE---------------- 200
Query: 225 VNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVAT 284
+Y+ + E+ + K+ + + + + I K AT
Sbjct: 201 -------------KYNSKRKQLEQAIKLKENKAQGMIKPPSKTMGTSESRI--WKMQHAT 245
Query: 285 SGQAKAREKKLAKMEI-----VETISEKPKPHFDFKFSRK-PSRLVFEAKDLVIGYNEP- 337
+ R K + I VE I E P D + R V K+L I +N
Sbjct: 246 KQKKMHRNTKSLETRIDKLNHVEKIKELPSIKMDLPNREQFHGRNVISLKNLSIKFNNQF 305
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK- 396
L + + ++ G+K+A IG+NG+GK+TLLK ++ + S V I Y Q +
Sbjct: 306 LWRDASFVIKGGEKVAIIGNNGVGKTTLLKLILEKVES----VIISPSVKIGYVSQNLDV 361
Query: 397 NPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
S K++L+++ ++ R LAR+ + + VLSGGEQ K+ FAKL +
Sbjct: 362 LQSHKSILENVMST-SIQDETIARIVLARLHFYRNDVHKEINVLSGGEQIKVAFAKLFVS 420
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ N LILDEPTN+LD+DA E L+ LI Y G VL SH+ +F + L ++ E
Sbjct: 421 DCNTLILDEPTNYLDIDAVEALEELLITYEGVVLFASHDKKFIQNLAEQLLIIE 474
Score = 76.9 bits (186), Expect = 4e-13
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTV 403
LK+ SG KI +G NG+GK+TLLK + GLI +G + I Y Q ++ P K +
Sbjct: 24 LKIYSGDKIGIVGKNGVGKTTLLKIIKGLIEIDEGNIIISEKTTIKYISQ-LEEPHSKII 82
Query: 404 ---LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNI 460
++ WN +SGGE+ + + A+ + ++
Sbjct: 83 DGKYASIFQVENKWNDN----------------------MSGGEKTRFKLAEGFQDQCSL 120
Query: 461 LILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+++DEPT++LD++ E + EY T L+VSH+ F + + + + E
Sbjct: 121 MLVDEPTSNLDIEGIELITNTFKEYRDTFLVVSHDRIFLDQVCTKIFEIE 170
Score = 64.0 bits (153), Expect = 3e-09
Identities = 52/253 (20%), Positives = 101/253 (39%), Gaps = 46/253 (18%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
+++++KNLS F ++ ++ D SF + GE + +G NG GK+T + +I + VI
Sbjct: 290 NVISLKNLSIKFNNQFLWRDASFVIKGGEKVAIIGNNGVGKTTLLKLI----LEKVESVI 345
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
S ++GY+ Q+ D + E+ M+ +++
Sbjct: 346 ISPSVKIGYVSQNL---------------------------DVLQSHKSILENVMSTSIQ 378
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+ + L FY D + K++ LSGG++ K
Sbjct: 379 DETIARIVLARLHFYRND---------------VHKEINVLSGGEQIKVAFAKLFVSDCN 423
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TNYLD + + L+ L YE + SHD F+ + + + + ++
Sbjct: 424 TLILDEPTNYLDIDAVEALEELLITYEGVVLFASHDKKFIQNLAEQLLIIENNKVKKFEG 483
Query: 242 GYAEFERVFEEKK 254
Y E+ ++ ++ K
Sbjct: 484 TYIEYLKIKDKPK 496
gi|1408178 (U37225) elongation factor 3 related protein PFEF3-rl [Plasmodium
falciparum]
Length = 816
Score = 144 bits (360), Expect = 1e-33
Identities = 138/604 (22%), Positives = 250/604 (40%), Gaps = 91/604 (15%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK--VI 61
+ + N + G R++ D + ++ G +G NG GKST + + + + K I
Sbjct: 196 IEIDNFNISIGQRSLLSDTTLKINVMNKYGLIGKNGIGKSTLLAKLARYEIEEIKKDISI 255
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQ-----------INDTYMKMAE 110
+ + ++ VL + + L +EA+ N+T K +
Sbjct: 256 ACQLEQELCLENVTVLESDLMVDKLRHDLLLELEQLEARKIKLDPNEEILSNETEEKNTQ 315
Query: 111 MSEDEMNAALEN-------------------VGELQEELDNSDFYLIDAKVEETARGLGL 151
++ + N +N + ++ E+L++ + + + + GLG
Sbjct: 316 KNDTKNNKHNKNNKNVENMEPIETVESIEQKILDIYEKLNSISYLEAEKEASKILCGLGF 375
Query: 152 -TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENA 210
+ L K V LSGG + K TN+LD I +L +Y+K
Sbjct: 376 DSNLQKKKVNSLSGGMKMKIMLSRILFSNNDIILLDEPTNHLDIYTIQFLIDYIKKLNKT 435
Query: 211 FILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAK 270
I++SHD F++EV I H H +T YS Y +FE+ E Q + H++ ++
Sbjct: 436 CIIVSHDRDFLNEVCTDIIHFHNHQLTYYSGNYDQFEKTRIEHLLQQQREHDSLELKKKH 495
Query: 271 LKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDF---------------- 314
++ FI R + N + ++R K L K+ +V E F F
Sbjct: 496 VQKFIDRFRYNSKRAALVQSRIKLLNKLPVVNLEKEDTPFSFSFLEPFYMSNVLIKLKNV 555
Query: 315 KFSRK--PSRLVFEAKDLVIGYNEPLSSE------------------------------- 341
F K + V + K+++IG +E ++E
Sbjct: 556 SFRNKMFTNLRVRKNKNILIGDHENETNEETYEDENELDNNGQPVSKTYEDKYKFKHEYL 615
Query: 342 ---INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ---EI 395
+ +V+ +IA G NG GK+TL+K ++ LI +GE+ N +I YY Q +
Sbjct: 616 FKNASFEVDMDSRIAICGVNGSGKTTLIKIILNLITVYEGELHVSNKANIGYYSQYHVDC 675
Query: 396 KNPSQKTVLDDLWDEYPSWN--QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
NP ++ L Y + N + E + + + +YVLSGG+++KL L
Sbjct: 676 LNPIYNSI-QQLQYTYSNKNIKEEEAIKYFNKFNIPTNILYEPIYVLSGGQKSKLALRIL 734
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
N+LILDEP+NHLD+++ + L AL Y G ++++SH+ + + ++ + T
Sbjct: 735 AYKNPNVLILDEPSNHLDIESVQALIVALNMYKGGLIIISHDTYLIKHVADEIYHINNIT 794
Query: 514 TRIL 517
++
Sbjct: 795 KELV 798
Score = 60.9 bits (145), Expect = 2e-08
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 47/240 (19%)
Query: 13 FGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMD 72
F +F++ SF + I G NG GK+T + II + EG++ S K +GY
Sbjct: 610 FKHEYLFKNASFEVDMDSRIAICGVNGSGKTTLIKIILNLITVYEGELHVSNKANIGYYS 669
Query: 73 QHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDN 132
Q+ V D +N ++ +LQ N
Sbjct: 670 QYHV-------------------------------------DCLNPIYNSIQQLQYTYSN 692
Query: 133 SDFYLIDAKVEETARGLGL----TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
+ K EE + T +L + + LSGGQ++K
Sbjct: 693 KNI-----KEEEAIKYFNKFNIPTNILYEPIYVLSGGQKSKLALRILAYKNPNVLILDEP 747
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFER 248
+N+LD E + L L Y+ I+ISHD + V + IYH++ + + Y EF++
Sbjct: 748 SNHLDIESVQALIVALNMYKGGLIIISHDTYLIKHVADEIYHINNITKELVKIDY-EFDK 806
pir||S56147 GCN20-2 protein - Caenorhabditis elegans (fragment) >gi|695169
(U20783) unknown [Caenorhabditis elegans]
Length = 535
Score = 144 bits (360), Expect = 1e-33
Identities = 117/468 (25%), Positives = 205/468 (43%), Gaps = 27/468 (5%)
Query: 6 VKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKK 65
V++L+ F R I D L +G G +G NG GKST + I +P V
Sbjct: 83 VESLTITFHGREIVVDTKLELNRGRRYGLIGLNGSGKSTIIQAIYNKEMPIPESVDM--- 139
Query: 66 HRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGE 125
Y+ + KT +A+ + ++E + E S+D++ +
Sbjct: 140 ----YLVSREMPASEKTALQAVVDVDSVRKELEHLAEQLASQTDEESQDKLM-------D 188
Query: 126 LQEELDNSDFYLIDAKVEETARGLGLTPLLD-KDVAELSGGQRTKXXXXXXXXXXXXXXX 184
+ E LD D L + K E GLG T + K + SGG R +
Sbjct: 189 VYERLDEMDASLAEKKAAEILHGLGFTKTMQMKKCKDFSGGWRMRIRLARALFLKPSVLL 248
Query: 185 XXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYA 244
TN+LD E +WL+ L Y+ +++SH FM+ V I H+ + Y Y
Sbjct: 249 LDEPTNHLDLEACVWLEEELAQYKRTLLVVSHSQDFMNGVCTNIIHLFQKQLVYYGGNYD 308
Query: 245 EFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR-KKANVATSGQAKAREKKLAKM----E 299
+F + E + +N + ++ +KD++AR + + QA+++EK +AKM
Sbjct: 309 QFVKTRLELLENQQKRYNWEQSQLQHMKDYVARFGHGSAKLARQAQSKEKTMAKMIAGGL 368
Query: 300 IVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAFIG 356
+ ++E K + F P ++ + + YNE + +I+ ++ +IA +G
Sbjct: 369 AEKAVTETVKQFYFFDAGEIPPPVIM-VQHVSFRYNENTPWIYKDIDFGIDLDTRIALVG 427
Query: 357 SNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN--PSQKTVLDDLWDEYPSW 414
NG GKSTLLK L + DG + + + I Y Q + P + L+ + E+P
Sbjct: 428 PNGAGKSTLLKLLCTDVMPTDGLIRRHSHCKIGRYHQHLHEELPLDLSALEFMMKEFPDV 487
Query: 415 NQ-AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
+ E+R + R G+T ++ + LS G++ ++ FA L + ++L
Sbjct: 488 KEKEEMRKIVGRYGITGREQVCPMKQLSDGQRCRVSFAWLAWQQPHLL 535
Score = 80.8 bits (196), Expect = 3e-14
Identities = 67/287 (23%), Positives = 136/287 (47%), Gaps = 40/287 (13%)
Query: 251 EEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKP 310
EEKK + + + ++ + + + R+ A + R K A + +++ PK
Sbjct: 19 EEKKKEGRNTNRHVISTSVRQQSLLFRRGARSGRRHLGQNRIGKRAARSVAGSLTSDPKG 78
Query: 311 HFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSL- 369
D + + + F +++V+ + L++ G++ IG NG GKST+++++
Sbjct: 79 -LDHRV--ESLTITFHGREIVV--------DTKLELNRGRRYGLIGLNGSGKSTIIQAIY 127
Query: 370 ---MGLIPSLDGEV--------EKGNFQ----------DIAYYEQEIKNPSQKTVLDDLW 408
M + S+D + EK Q ++ + +++ + + + D L
Sbjct: 128 NKEMPIPESVDMYLVSREMPASEKTALQAVVDVDSVRKELEHLAEQLASQTDEESQDKLM 187
Query: 409 DEYPSWNQ-----AELRGA--LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
D Y ++ AE + A L +G T + SGG + ++R A+ + + ++L
Sbjct: 188 DVYERLDEMDASLAEKKAAEILHGLGFTKTMQMKKCKDFSGGWRMRIRLARALFLKPSVL 247
Query: 462 ILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVIN 508
+LDEPTNHLD++A L+ L +Y T+L+VSH +F G+ +++I+
Sbjct: 248 LLDEPTNHLDLEACVWLEEELAQYKRTLLVVSHSQDFMNGVCTNIIH 294
dbj|BAA88415.1| (AB016613) MsrSA [Staphylococcus aureus]
>gi|6594281|dbj|BAA88418.1| (AB016614) MsrSA
[Staphylococcus aureus]
Length = 488
Score = 144 bits (359), Expect = 2e-33
Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 62/440 (14%)
Query: 104 TYMKMAEMSEDEMNAALENVGELQ--EELD---NSDFYLIDAKVEETARGLGLTPLLDKD 158
T + M + +E GE+Q E+L+ +DF +D + P+ D
Sbjct: 46 TLLNMIAQKTKPESGTVETNGEIQYFEQLNMDVENDFNTLDGSLMSELH----IPMHTTD 101
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
+SGG++ K TN+LD+ +L N LK Y I++SHD
Sbjct: 102 --SMSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDR 159
Query: 219 PFMDEVVNIIYHVHGLGITRYSMG-YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR 277
+D++ + I+ + G R G Y +++ +E+++ + + + ++E+ +L
Sbjct: 160 ALIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKA 219
Query: 278 KKANVATSGQAKAREKKLA----------------------------KMEIVETISEKPK 309
K+ QA +++K + +ME +E + EKP+
Sbjct: 220 KRNQAQQMAQASSKQKNKSIAPDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEV-EKPQ 278
Query: 310 PHFDFKFSRKPSRLVFE--------AKDL-VIGYNEPLSSEINLKVESGQKIAFIGSNGI 360
+ +F F P +++ A++L ++ ++ L +++ ++ G+ IA +G+NG+
Sbjct: 279 SYHEFNF---PQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGV 335
Query: 361 GKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAE 418
GK+TLL+++ I +D +V+ ++ +AY + ++L L DE S +++
Sbjct: 336 GKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMR-----DVSLLQYLMDETDS-SESF 389
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
R L +GL + +E VLSGGE+ KL A L +T++N+LILDEPTN LD+ E L
Sbjct: 390 SRAILNNLGLN-EALERSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEAL 448
Query: 479 KRALIEYPGTVLMVSHEPEF 498
+ + +YPG +L SH+ F
Sbjct: 449 EMFMNKYPGIILFTSHDTRF 468
Score = 73.7 bits (178), Expect = 3e-12
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 21/163 (12%)
Query: 350 QKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWD 409
+KIA IG NG GK+TLL + G VE +I Y+EQ + D+ +
Sbjct: 32 EKIALIGGNGTGKTTLLNMIAQKTKPESGTVETNG--EIQYFEQ---------LNMDVEN 80
Query: 410 EYPSWNQAELRGAL-ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
++ + L G+L + + + +S +SGGE+AK + A +++ S IL+LDEPTN
Sbjct: 81 DFNT-----LDGSLMSELHIPMHTTDS----MSGGEKAKYKLANVISNYSPILLLDEPTN 131
Query: 469 HLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
HLD K+ L L Y GT+++VSH+ + + + + +E
Sbjct: 132 HLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQE 174
Score = 49.2 bits (115), Expect = 8e-05
Identities = 43/188 (22%), Positives = 76/188 (39%), Gaps = 11/188 (5%)
Query: 52 TLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKM 108
TLV K++ + ++ Y A++G + L EA + D ++ Y +
Sbjct: 305 TLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQ 364
Query: 109 AEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRT 168
ED + +L + L +E D+S+ + LGL L++ LSGG+RT
Sbjct: 365 LAY-EDMRDVSL--LQYLMDETDSSESFS-----RAILNNLGLNEALERSCNVLSGGERT 416
Query: 169 KXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
K TN+LD + + L+ ++ Y + SHD F+ V +
Sbjct: 417 KLSLAVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKK 476
Query: 229 YHVHGLGI 236
+ + G I
Sbjct: 477 WELTGQSI 484
dbj|BAA34539| (AB013298) MsrSA [Staphylococcus aureus]
Length = 488
Score = 144 bits (359), Expect = 2e-33
Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 62/440 (14%)
Query: 104 TYMKMAEMSEDEMNAALENVGELQ--EELD---NSDFYLIDAKVEETARGLGLTPLLDKD 158
T + M + +E GE+Q E+L+ +DF +D + P+ D
Sbjct: 46 TLLNMIAQKTKPESGTVETDGEIQYFEQLNMDVENDFNTLDGSLMSELH----IPMHTTD 101
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
+SGG++ K TN+LD+ +L N LK Y I++SHD
Sbjct: 102 --SMSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDR 159
Query: 219 PFMDEVVNIIYHVHGLGITRYSMG-YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR 277
+D++ + I+ + G R G Y +++ +E+++ + + + ++E+ +L
Sbjct: 160 ALIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRQYEQYISEKQRLSQASKA 219
Query: 278 KKANVATSGQAKAREKKLA----------------------------KMEIVETISEKPK 309
K+ QA +++K + +ME +E + EKP+
Sbjct: 220 KRNQAQQMAQASSKQKNKSIAPDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEV-EKPQ 278
Query: 310 PHFDFKFSRKPSRLVFE--------AKDL-VIGYNEPLSSEINLKVESGQKIAFIGSNGI 360
+ +F F P +++ A++L ++ ++ L +++ ++ G+ IA +G+NG+
Sbjct: 279 SYHEFNF---PQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGV 335
Query: 361 GKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAE 418
GK+TLL+++ I +D +V+ ++ +AY + ++L L DE S +++
Sbjct: 336 GKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMR-----DVSLLQYLMDETDS-SESF 389
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
R L +GL + +E VLSGGE+ KL A L +T++N+LILDEPTN LD+ E L
Sbjct: 390 SRAILNNLGLN-EALERSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEAL 448
Query: 479 KRALIEYPGTVLMVSHEPEF 498
+ + +YPG +L SH+ F
Sbjct: 449 EMFMNKYPGIILFTSHDTRF 468
Score = 74.5 bits (180), Expect = 2e-12
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 343 NLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKT 402
NL +KIA IG NG GK+TLL + G VE +I Y+EQ
Sbjct: 25 NLYAYQFEKIALIGGNGTGKTTLLNMIAQKTKPESGTVETDG--EIQYFEQ--------- 73
Query: 403 VLDDLWDEYPSWNQAELRGAL-ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
+ D+ +++ + L G+L + + + +S +SGGE+AK + A +++ S IL
Sbjct: 74 LNMDVENDFNT-----LDGSLMSELHIPMHTTDS----MSGGEKAKYKLANVISNYSPIL 124
Query: 462 ILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
+LDEPTNHLD K+ L L Y GT+++VSH+ + + + + +E
Sbjct: 125 LLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQE 174
Score = 49.2 bits (115), Expect = 8e-05
Identities = 43/188 (22%), Positives = 76/188 (39%), Gaps = 11/188 (5%)
Query: 52 TLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKM 108
TLV K++ + ++ Y A++G + L EA + D ++ Y +
Sbjct: 305 TLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQ 364
Query: 109 AEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRT 168
ED + +L + L +E D+S+ + LGL L++ LSGG+RT
Sbjct: 365 LAY-EDMRDVSL--LQYLMDETDSSESFS-----RAILNNLGLNEALERSCNVLSGGERT 416
Query: 169 KXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
K TN+LD + + L+ ++ Y + SHD F+ V +
Sbjct: 417 KLSLAVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKK 476
Query: 229 YHVHGLGI 236
+ + G I
Sbjct: 477 WELTGQSI 484
sp|P23212|MSRA_STAEP ERYTHROMYCIN RESISTANCE ATP-BINDING PROTEIN MSRA
>gi|72844|pir||YESAEE erythromycin resistance protein -
Staphylococcus epidermidis plasmid pUL5050
Length = 488
Score = 144 bits (359), Expect = 2e-33
Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 62/440 (14%)
Query: 104 TYMKMAEMSEDEMNAALENVGELQ--EELD---NSDFYLIDAKVEETARGLGLTPLLDKD 158
T + M + +E GE+Q E+L+ +DF +D + P+ D
Sbjct: 46 TLLNMIAQKTKPESGTVETNGEIQYFEQLNMDVENDFNTLDGSLMSELH----IPMHTTD 101
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
+SGG++ K TN+LD+ +L N LK Y I++SHD
Sbjct: 102 --SMSGGEKAKYKLANVISNYSPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDR 159
Query: 219 PFMDEVVNIIYHVHGLGITRYSMG-YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR 277
+D++ + I+ + G R G Y +++ +E+++ + + + ++E+ +L
Sbjct: 160 ALIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKA 219
Query: 278 KKANVATSGQAKAREKKLA----------------------------KMEIVETISEKPK 309
K+ QA +++K + +ME +E + EKP+
Sbjct: 220 KRNQAQQMAQASSKQKNKSIAPDRLSASKEKGTVEKAAQKQAKHIEKRMEHLEEV-EKPQ 278
Query: 310 PHFDFKFSRKPSRLVFE--------AKDL-VIGYNEPLSSEINLKVESGQKIAFIGSNGI 360
+ +F F P +++ A++L ++ ++ L +++ ++ G+ IA +G+NG+
Sbjct: 279 SYHEFNF---PQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGV 335
Query: 361 GKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAE 418
GK+TLL+++ I +D +V+ ++ +AY + ++L L DE S +++
Sbjct: 336 GKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMR-----DVSLLQYLMDETDS-SESF 389
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
R L +GL + +E VLSGGE+ KL A L +T++N+LILDEPTN LD+ E L
Sbjct: 390 SRAILNNLGLN-EALERSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEAL 448
Query: 479 KRALIEYPGTVLMVSHEPEF 498
+ + +YPG +L SH+ F
Sbjct: 449 EMFMNKYPGIILFTSHDTRF 468
Score = 73.7 bits (178), Expect = 3e-12
Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 21/163 (12%)
Query: 350 QKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWD 409
+KIA IG NG GK+TLL + G VE +I Y+EQ + D+ +
Sbjct: 32 EKIALIGGNGTGKTTLLNMIAQKTKPESGTVETNG--EIQYFEQ---------LNMDVEN 80
Query: 410 EYPSWNQAELRGAL-ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
++ + L G+L + + + +S +SGGE+AK + A +++ S IL+LDEPTN
Sbjct: 81 DFNT-----LDGSLMSELHIPMHTTDS----MSGGEKAKYKLANVISNYSPILLLDEPTN 131
Query: 469 HLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
HLD K+ L L Y GT+++VSH+ + + + + +E
Sbjct: 132 HLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQE 174
Score = 49.2 bits (115), Expect = 8e-05
Identities = 43/188 (22%), Positives = 76/188 (39%), Gaps = 11/188 (5%)
Query: 52 TLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKM 108
TLV K++ + ++ Y A++G + L EA + D ++ Y +
Sbjct: 305 TLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQ 364
Query: 109 AEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRT 168
ED + +L + L +E D+S+ + LGL L++ LSGG+RT
Sbjct: 365 LAY-EDMRDVSL--LQYLMDETDSSESFS-----RAILNNLGLNEALERSCNVLSGGERT 416
Query: 169 KXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
K TN+LD + + L+ ++ Y + SHD F+ V +
Sbjct: 417 KLSLAVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKK 476
Query: 229 YHVHGLGI 236
+ + G I
Sbjct: 477 WELTGQSI 484
emb|CAA36304| (X52085) erythromycin resistance protein (AA 1-488) [Staphylococcus
epidermidis]
Length = 488
Score = 143 bits (358), Expect = 3e-33
Identities = 112/440 (25%), Positives = 209/440 (47%), Gaps = 62/440 (14%)
Query: 104 TYMKMAEMSEDEMNAALENVGELQ--EELD---NSDFYLIDAKVEETARGLGLTPLLDKD 158
T + M + +E GE+Q E+L+ +DF +D + P+ D
Sbjct: 46 TLLNMIAQKTKPESGTVETNGEIQYFEQLNMDVENDFNTLDGSLMSELH----IPMHTTD 101
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
+SGG++ K TN+LD+ +L N LK Y I++SHD
Sbjct: 102 --SMSGGEKAKYKLRNVISNYSPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDR 159
Query: 219 PFMDEVVNIIYHVHGLGITRYSMG-YAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIAR 277
+D++ + I+ + G R G Y +++ +E+++ + + + ++E+ +L
Sbjct: 160 ALIDQIADTIWDIQEDGTIRVFKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKA 219
Query: 278 KKANVATSGQAKAREKKLA----------------------------KMEIVETISEKPK 309
K+ QA +++K + +ME +E + EKP+
Sbjct: 220 KRNQAQQMAQASSKQKNKSIAPDRLSASKEKGTVEKAAQKQAKHIEKRMEHLEEV-EKPQ 278
Query: 310 PHFDFKFSRKPSRLVFE--------AKDL-VIGYNEPLSSEINLKVESGQKIAFIGSNGI 360
+ +F F P +++ A++L ++ ++ L +++ ++ G+ IA +G+NG+
Sbjct: 279 SYHEFNF---PQNKIYDIHNNYPIIAQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGV 335
Query: 361 GKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAE 418
GK+TLL+++ I +D +V+ ++ +AY + ++L L DE S +++
Sbjct: 336 GKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMR-----DVSLLQYLMDETDS-SESF 389
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
R L +GL + +E VLSGGE+ KL A L +T++N+LILDEPTN LD+ E L
Sbjct: 390 SRAILNNLGLN-EALERSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEAL 448
Query: 479 KRALIEYPGTVLMVSHEPEF 498
+ + +YPG +L SH+ F
Sbjct: 449 EMFMNKYPGIILFTSHDTRF 468
Score = 71.8 bits (173), Expect = 1e-11
Identities = 52/163 (31%), Positives = 85/163 (51%), Gaps = 21/163 (12%)
Query: 350 QKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWD 409
+KIA IG NG GK+TLL + G VE +I Y+EQ + D+ +
Sbjct: 32 EKIALIGGNGTGKTTLLNMIAQKTKPESGTVETNG--EIQYFEQ---------LNMDVEN 80
Query: 410 EYPSWNQAELRGAL-ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
++ + L G+L + + + +S +SGGE+AK + +++ S IL+LDEPTN
Sbjct: 81 DFNT-----LDGSLMSELHIPMHTTDS----MSGGEKAKYKLRNVISNYSPILLLDEPTN 131
Query: 469 HLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
HLD K+ L L Y GT+++VSH+ + + + + +E
Sbjct: 132 HLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQE 174
Score = 49.2 bits (115), Expect = 8e-05
Identities = 43/188 (22%), Positives = 76/188 (39%), Gaps = 11/188 (5%)
Query: 52 TLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKM 108
TLV K++ + ++ Y A++G + L EA + D ++ Y +
Sbjct: 305 TLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQ 364
Query: 109 AEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRT 168
ED + +L + L +E D+S+ + LGL L++ LSGG+RT
Sbjct: 365 LAY-EDMRDVSL--LQYLMDETDSSESFS-----RAILNNLGLNEALERSCNVLSGGERT 416
Query: 169 KXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
K TN+LD + + L+ ++ Y + SHD F+ V +
Sbjct: 417 KLSLAVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKK 476
Query: 229 YHVHGLGI 236
+ + G I
Sbjct: 477 WELTGQSI 484
pir||S45043 expZ protein - Bacillus subtilis (fragment)
>gi|494958|emb|CAA55930| (X79387) ExpZ [Bacillus
subtilis]
Length = 425
Score = 143 bits (356), Expect = 4e-33
Identities = 98/341 (28%), Positives = 174/341 (50%), Gaps = 33/341 (9%)
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS---MGYAE 245
TN+LDE+ + +L LK+Y IL+SHD F+DE I+ + + + GY +
Sbjct: 9 TNHLDEKSLQFLIQQLKHYNGTVILVSHDRYFLDEAATKIWSLEDQTLIEFKGNYSGYMK 68
Query: 246 F--------ERVFEEKKAQLESLH-------------NAQVAEQAKLKDFIARKKANVAT 284
F +R +E+++ +E + +AQ ++ K++ R KA T
Sbjct: 69 FREKKRLTQQREYEKQQKMVERIEAQMNGLASWSEKAHAQSTKKEGFKEY-HRVKAK-RT 126
Query: 285 SGQAKAREKKLAKMEIVETISEKPKPHFDFKFS----RKPSRLVFEAKDLVIGYNE-PLS 339
Q K+++K+L K E+ + +E P + +FS K + E +++ + E L
Sbjct: 127 DAQIKSKQKRLEK-ELEKAKAEPVTPEYTVRFSIDTTHKTGKRFLEVQNVTKAFGERTLF 185
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPS 399
N ++ G+K+A IG NG GK+TLL ++G + +G V +I Y QE+ +
Sbjct: 186 KNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQ-ETAEGSVWVSPSANIGYLTQEVFDLP 244
Query: 400 QKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESN 459
+ ++L++ + ++ + +G TA Q + +S GE+ K++ + E +
Sbjct: 245 LEQTPEELFENETFKARGHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKD 304
Query: 460 ILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYE 500
+LILDEPTNHLD+ ++E+L+ L +Y GT+L VSH+ F E
Sbjct: 305 VLILDEPTNHLDLPSREQLEETLSQYSGTLLAVSHDRYFLE 345
Score = 69.1 bits (166), Expect = 8e-11
Identities = 59/257 (22%), Positives = 98/257 (37%), Gaps = 45/257 (17%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V+N++ FG+R +F++ +F + GE + +G NG GK+T +NII G EG V S
Sbjct: 170 LEVQNVTKAFGERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETA-EGSVWVS 228
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV 123
+GY+ Q +FD+ +
Sbjct: 229 PSANIGYLTQE-------------------VFDLPLE----------------------- 246
Query: 124 GELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ EEL ++ + V+ R LG T + + +S G+R K
Sbjct: 247 -QTPEELFENETFKARGHVQNLMRHLGFTAAQWTEPIKHMSMGERVKIKLMAYILEEKDV 305
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMG 242
TN+LD L+ L Y + +SHD F+++ N + GI +
Sbjct: 306 LILDEPTNHLDLPSREQLEETLSQYSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLND 365
Query: 243 YAEFERVFEEKKAQLES 259
EE + +LE+
Sbjct: 366 VPSERNEREELRLKLET 382
Score = 46.9 bits (109), Expect = 4e-04
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 459 NILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
++L+LDEPTNHLD + + L + L Y GTV++VSH+ F + + + + E+ T
Sbjct: 1 DLLLLDEPTNHLDEKSLQFLIQQLKHYNGTVILVSHDRYFLDEAATKIWSLEDQT 55
pir||S52368 Ard1 protein - Streptomyces capreolus >gi|2147126|pir||S68981 ard1
protein - Streptomyces capreolus
>gi|667060|emb|CAA59109| (X84374) Ard1 [Streptomyces
capreolus]
Length = 558
Score = 140 bits (349), Expect = 3e-32
Identities = 139/526 (26%), Positives = 225/526 (42%), Gaps = 45/526 (8%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V +S FG +VSF + G +G VG NG GK+T + I+ G PD G+V S
Sbjct: 14 LVVDAVSKSFGPLVALAEVSFTVAPGRRVGIVGRNGAGKTTLLKIMAGLTAPDGGRVRRS 73
Query: 64 KKH-RVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE--MSEDEMNAAL 120
VGY+ Q G+T + LA + D E ++ + +ED AL
Sbjct: 74 PADVTVGYVPQEPDGAPGETLGDYLARRGG-ITDAETRLQRAAEALCRDPAAEDAYQRAL 132
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+ + L E DF DA+ +GLT L + +SGG+ +
Sbjct: 133 DQLVALGAE----DF---DARCARAVDTVGLTAL-SAPMDAMSGGESARARLAAVLLSRH 184
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG--ITR 238
TN LD L + N +L+SHD F++ V + + T
Sbjct: 185 DFLLLDEPTNDLDFAGQDLLDELVANTPAGIVLVSHDRAFLERTVTDVVELDQFSHQATV 244
Query: 239 YSMGYAEF-ERVFEEKKAQLESLHNAQVAEQAKLKDFIARK-----------KANVATSG 286
Y G++++ +R E+ Q E H V+E+ ++ + R+ K +
Sbjct: 245 YPGGWSDYLDRRRRERDRQYER-HELYVSERDRITQMMRRQQEWARKGAIRAKTRATDNN 303
Query: 287 QA----------------KAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDL 330
+A KA K+L ++E + E + + + + LV + +
Sbjct: 304 KAARHGRREHAEALGHGVKALAKRLERLEKTDQPREGWQLRYTIAAAPRGGDLVARLRGV 363
Query: 331 VIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAY 390
+ + ++L + +IA +G NG GK+TLL L+G +G V+ G +
Sbjct: 364 RVCRGDLDLGPLDLDIAWRDRIALLGPNGSGKTTLLSLLLGTARPDEGTVQLGARTVVGS 423
Query: 391 YEQE-IKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLR 449
+QE S T+L+ + + E R LA+ L A ++ LS GE +
Sbjct: 424 LDQERALFRSAGTLLEGV-ERATGLRPEEARTLLAKFDLGADDLDRPARDLSPGEHTRAE 482
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
A LM N LILDEPTNHLD+ A E+L++AL + GT+++V+H+
Sbjct: 483 LAVLMARGVNTLILDEPTNHLDLAAIEQLQQALNAFEGTLVLVTHD 528
Score = 76.9 bits (186), Expect = 4e-13
Identities = 54/212 (25%), Positives = 95/212 (44%), Gaps = 40/212 (18%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ-DIAYYEQE---- 394
+E++ V G+++ +G NG GK+TLLK + GL G V + + Y QE
Sbjct: 30 AEVSFTVAPGRRVGIVGRNGAGKTTLLKIMAGLTAPDGGRVRRSPADVTVGYVPQEPDGA 89
Query: 395 -----------------------------IKNPSQKTVLDDLWDEYPSWNQAELRGALAR 425
++P+ + D+ + + AR
Sbjct: 90 PGETLGDYLARRGGITDAETRLQRAAEALCRDPAAEDAYQRALDQLVALGAEDFDARCAR 149
Query: 426 ----VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
VGLTA + + + +SGGE A+ R A ++ + + L+LDEPTN LD ++ L
Sbjct: 150 AVDTVGLTA--LSAPMDAMSGGESARARLAAVLLSRHDFLLLDEPTNDLDFAGQDLLDEL 207
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
+ P +++VSH+ F E V+DV+ ++++
Sbjct: 208 VANTPAGIVLVSHDRAFLERTVTDVVELDQFS 239
pir||JC1204 vgA protein - Staphylococcus aureus >gi|153125 (M90056) ATP-binding
protein [Staphylococcus aureus]
>gi|6690335|gb|AAF24091.1|AF117259_3 (AF117259) ATP
binding protein VgA [Staphylococcus aureus]
Length = 522
Score = 132 bits (330), Expect = 5e-30
Identities = 115/404 (28%), Positives = 186/404 (45%), Gaps = 49/404 (12%)
Query: 151 LTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENA 210
L P L + SGG+ T+ T LD +I L+ LKN+ A
Sbjct: 69 LIPQLKLIESTKSGGEVTRNYIRQALDKNPELLLADEPTTNLDNNYIEKLEQDLKNWHGA 128
Query: 211 FILISHDVPFMDEVVNIIYHVHGLGITRYSMGYA---------------EFERVFEEKKA 255
FI++SHD F+D + I+ + IT Y Y+ E+E+ +E++K
Sbjct: 129 FIIVSHDRAFLDNLCTTIWEIDEGRITEYKGNYSNYVEQKELERHREELEYEK-YEKEKK 187
Query: 256 QLESLHNA--QVAEQAK---------------LKDFIARKKANVATSGQAKAREKKLAKM 298
+LE N Q A++A K + A K+ + + K+ E +L K+
Sbjct: 188 RLEKAINIKEQKAQRATKKPKNLSLSEGKIKGAKPYFAGKQKKLRKT--VKSLETRLEKL 245
Query: 299 EIVETISEKPKPHFDF-KFSRKPSRLVFEAKDLVIGYNEP--LSSEINLKVESGQKIAFI 355
E VE +E P D +R + +D V G E L + + G K+A I
Sbjct: 246 ESVEKRNELPPLKMDLVNLESVKNRTIIRGED-VSGTIEGRVLWKAKSFSIRGGDKMAII 304
Query: 356 GSNGIGKSTLLKSLMGLIP--SLDGEVEKGNFQDIAYYEQEIKNPS-QKTVLDDLWDEYP 412
GSNG GK+T +K ++ P SL V+ I Y+ Q+I K++L+++
Sbjct: 305 GSNGTGKTTFIKKIVHGNPGISLSPSVK------IGYFSQKIDTLELDKSILENVQSSSQ 358
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
N+ +R LAR+ + + VLSGGE+ K+ K+ +E N L+LDEPTN LD+
Sbjct: 359 Q-NETLIRTILARMHFFRDDVYKPISVLSGGERVKVALTKVFLSEVNTLVLDEPTNFLDM 417
Query: 473 DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTRI 516
+A E + L EY G+++ VSH+ +F E + + ++ + +I
Sbjct: 418 EAIEAFESLLKEYNGSIIFVSHDRKFIEKVATRIMTIDNKEIKI 461
Score = 57.4 bits (136), Expect = 3e-07
Identities = 57/265 (21%), Positives = 103/265 (38%), Gaps = 53/265 (20%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
+I+ +++S R +++ SF + G+ + +G+NG GK+TF+ I V +
Sbjct: 271 TIIRGEDVSGTIEGRVLWKAKSFSIRGGDKMAIIGSNGTGKTTFIKKI----VHGNPGIS 326
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
S ++GY Q DT + E+ +++ +
Sbjct: 327 LSPSVKIGYFSQKI---------------------------DTLELDKSILENVQSSSQQ 359
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
N ++ L F+ D K ++ LSGG+R K
Sbjct: 360 NETLIRTILARMHFFRDDVY---------------KPISVLSGGERVKVALTKVFLSEVN 404
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD E I ++ LK Y + I +SHD F+++V I + I +
Sbjct: 405 TLVLDEPTNFLDMEAIEAFESLLKEYNGSIIFVSHDRKFIEKVATRIMTIDNKEIKIFDG 464
Query: 242 GYAEFER-------VFEEKKAQLES 259
Y +F++ + E+KK LE+
Sbjct: 465 TYEQFKQAEKPTRNIKEDKKLLLET 489
Score = 43.0 bits (99), Expect = 0.006
Identities = 18/53 (33%), Positives = 31/53 (57%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
N+ H DR + ++ + + IG +G NG GK+T ++I+ +VP+EG V
Sbjct: 9 NIKHYVQDRLLLNINRLKIYQNDRIGLIGKNGSGKTTLLHILYKKIVPEEGIV 61
emb|CAA22049| (AL033505) ABC transporter ATP-binding protein [Streptomyces
coelicolor]
Length = 539
Score = 131 bits (326), Expect = 1e-29
Identities = 141/518 (27%), Positives = 224/518 (43%), Gaps = 32/518 (6%)
Query: 1 MSILNVKNLSHGFGD-RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
M L +L + D RA+ DVSFR+ +G + VG NG GK+T + ++ G L P G
Sbjct: 1 MGHLEAAHLEYYLPDGRALLGDVSFRVGEGAVVALVGPNGAGKTTLLRLLAGELKPHGGT 60
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTT-REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNA 118
V + +G M Q + +TT R+ L A+ DT + A M+ D+ A
Sbjct: 61 V--AVGGGLGVMRQFVGSVRDETTVRDLLVSVAPPRIREAARAVDT-AEHAIMTVDDEAA 117
Query: 119 ALENVGELQE--ELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXX 176
L L + E + + A G+ + V LSGG++ +
Sbjct: 118 QLTYAQALSDWAEARGYEAETLWDMCTTAALGMPYDKAQWRQVRTLSGGEQKRLVLEALL 177
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFM----DEVVNIIYHVH 232
NYLD WL+ L + +SHD + +++V++
Sbjct: 178 RGTDEVLLLDEPDNYLDVPGKRWLEERLAETRKTVLFVSHDRELLARAAEKIVSVEPGPA 237
Query: 233 GLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATS----GQA 288
G + G+ F E+ A+ E L + A+LK + + S +
Sbjct: 238 GADAWVHGGGFTTFHEARRERFARFEELRRRWDEKHAQLKKLVLTLRQAAENSHDMASRY 297
Query: 289 KAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE--PLSSEINLKV 346
+A + +L K E E P+ D + K R A + G E L +L+V
Sbjct: 298 RAAQTRLRKFEEAGPPPEPPREQ-DIRMRLKGGRTGVRA--VTCGQLELTGLMKPFDLEV 354
Query: 347 ESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQ--KTVL 404
G+++A +GSNG GKS L+ L G + G+ + G ++ Q +P +T+L
Sbjct: 355 FYGERVAVLGSNGSGKSHFLRLLAGDDVAHTGDWKLGARVVPGHFAQTHAHPELLGRTLL 414
Query: 405 DDLWDEYPSWNQAELRGA----LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNI 460
D LW E+ A+ RGA L R LT +Q E LSGG+QA+ + L
Sbjct: 415 DILWTEH-----AQDRGAAMSRLRRYELT-QQAEQAFDRLSGGQQARFQILLLELQGVTA 468
Query: 461 LILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
L+LDEPT++LD+++ E L+ + + GTVL V+H+ F
Sbjct: 469 LLLDEPTDNLDLESAEALQEGVEGFEGTVLSVTHDRWF 506
Score = 66.7 bits (160), Expect = 4e-10
Identities = 60/217 (27%), Positives = 88/217 (39%), Gaps = 46/217 (21%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L +++ +V G +A +G NG GK+TLL+ L G + G V G + Q + +
Sbjct: 19 LLGDVSFRVGEGAVVALVGPNGAGKTTLLRLLAGELKPHGGTVAVGG--GLGVMRQFVGS 76
Query: 398 PSQKTVLDDLW--------------------------DEYPSWNQA-------ELRG--- 421
+T + DL DE A E RG
Sbjct: 77 VRDETTVRDLLVSVAPPRIREAARAVDTAEHAIMTVDDEAAQLTYAQALSDWAEARGYEA 136
Query: 422 -------ALARVGLTAKQIESR-VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD 473
A +G+ + + R V LSGGEQ +L L+ +L+LDEP N+LDV
Sbjct: 137 ETLWDMCTTAALGMPYDKAQWRQVRTLSGGEQKRLVLEALLRGTDEVLLLDEPDNYLDVP 196
Query: 474 AKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
K L+ L E TVL VSH+ E +++ E
Sbjct: 197 GKRWLEERLAETRKTVLFVSHDRELLARAAEKIVSVE 233
sp|P45167|UUP2_HAEIN ABC TRANSPORTER ATP-BINDING PROTEIN UUP-2 >gi|1074740|pir||B64171
hypothetical protein HI1342 - Haemophilus influenzae
(strain Rd KW20) >gi|1574802 (U32813) ABC transporter,
ATP-binding protein [Haemophilus influenzae Rd]
Length = 459
Score = 129 bits (321), Expect = 6e-29
Identities = 92/324 (28%), Positives = 163/324 (49%), Gaps = 20/324 (6%)
Query: 195 EHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKK 254
E I WL+N+L +++ + + ISHD + ++ I + + Y +G + +E+
Sbjct: 2 EAIEWLENFLLDFQGSIVFISHDRSVIRKMATRIVDLDRGQLQSY-LGNYDLYLTTKEEN 60
Query: 255 AQLESLHNAQVAEQAKLKDFIAR---KKANVATSGQAKA----REKKLAKMEIVETISEK 307
++E+L N ++ +D R K G+ +A RE++ + E++ T
Sbjct: 61 LRVEALQNELFDKRLAQEDVWIRQGIKARRTRNEGRVRALKAMREERRQRREVMGTAK-- 118
Query: 308 PKPHFDFKFSRKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSNGIGKSTLL 366
S + ++VFE +D+ + L + + + G KIA +G NG GK+T +
Sbjct: 119 ----LQLDTSSRSGKIVFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFI 174
Query: 367 KSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN-PSQKTVLDDLWDEYPSWN----QAELRG 421
K L+G I G++ G +IAY++Q + +K V+D++ D + + G
Sbjct: 175 KLLLGEIQPTSGKIRCGTKLEIAYFDQYRADLDPEKIVMDNVADGKQDIEINGVKRHVLG 234
Query: 422 ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
L K+ + V LSGGE+ +L AKL+ +N+LILDEPTN LDV+ E L+
Sbjct: 235 YLQEFLFPPKRAMTPVKALSGGERNRLLLAKLLLKPNNLLILDEPTNDLDVETLELLEEI 294
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSD 505
L +Y GT+L+VSH+ +F + ++
Sbjct: 295 LTDYQGTLLIVSHDRQFIDNTATE 318
Score = 81.1 bits (197), Expect = 2e-14
Identities = 77/301 (25%), Positives = 126/301 (41%), Gaps = 49/301 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ ++++S+ + + +D S +L+G+ I VG NG GK+TF+ ++ G + P GK+
Sbjct: 131 VFEMEDVSYEIAGKTLLKDFSTTILRGDKIALVGPNGCGKTTFIKLLLGEIQPTSGKIRC 190
Query: 63 SKKHRVGYMDQH-AVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
K + Y DQ+ A L K + +A+ Q + E+N
Sbjct: 191 GTKLEIAYFDQYRADLDPEKIVMDNVADGKQDI--------------------EINGVKR 230
Query: 122 NV-GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
+V G LQE +L K +TP V LSGG+R +
Sbjct: 231 HVLGYLQE-------FLFPPK-------RAMTP-----VKALSGGERNRLLLAKLLLKPN 271
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG-ITRY 239
TN LD E + L+ L +Y+ +++SHD F+D Y G G + +Y
Sbjct: 272 NLLILDEPTNDLDVETLELLEEILTDYQGTLLIVSHDRQFIDNTATECYLFEGEGRLNKY 331
Query: 240 SMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKAN-VATSGQAKAREKKLAKM 298
G+ F+ K+ Q + V EQAK K K+ + V +K + KL+
Sbjct: 332 VGGF------FDAKQQQANFWASKAVEEQAKAKKSEPLKEESAVKNDRTSKPKSVKLSYK 385
Query: 299 E 299
E
Sbjct: 386 E 386
emb|CAB40670.1| (AL049587) putative ABC transporter [Streptomyces coelicolor]
Length = 544
Score = 119 bits (296), Expect = 5e-26
Identities = 132/513 (25%), Positives = 209/513 (40%), Gaps = 73/513 (14%)
Query: 33 GFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQ 92
G VG NG GKST + +I G L P +G V +VGY+ Q+ L EAL
Sbjct: 37 GLVGLNGAGKSTLLKLIAGRLTPADGTV--RVAGQVGYLPQNVTLDTALRVDEALGI--- 91
Query: 93 YLFDIEAQINDTYMKMAEMSEDEMNAALENV--GELQEELDNS--DFYLIDAKVEETARG 148
D AAL + G+++EE + D + ++ + T
Sbjct: 92 ---------------------DGRRAALHAIEAGDVREEHFETVGDDWDVEERALATLGE 130
Query: 149 LGLTPL-LDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNY 207
LGL + LD+ V E+SGG+ TN LD L ++++
Sbjct: 131 LGLDHIGLDRTVGEVSGGESVLLRLAALLLRRPDVLLLDEPTNNLDVYARRRLYAAVESW 190
Query: 208 ENAFILISHDVPFMDEVVNII------YHVHGLGITRYSMGYAEFERVFEEKKAQLESLH 261
+++SHD +D V I +G +T Y A + E ES
Sbjct: 191 PGVMVVVSHDRELLDRVDQIADLRAGSVTWYGGNLTAYEEALAVEQEAAERMVRVAESDL 250
Query: 262 NAQVAEQAKLKDFIARKK--------------------ANVATSGQAKAR---EKKLAKM 298
Q E A + +AR++ A A K R E+KLA
Sbjct: 251 RRQKRELADAQVVLARRRRYGQKMYDTKREPRAVMKLRARTAQQSAGKYRIMHEEKLAGA 310
Query: 299 -----EIVETISEKPKPHFDFKFSR-KPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKI 352
+ VE + + + D ++ P R V + L + Y ++ ++L ++I
Sbjct: 311 KERLDDAVEAVRDDDEIRVDLPYTAVPPGRTVLTLRALELAYGARVAGGLDL--HGPERI 368
Query: 353 AFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK-TVLDDLWDEY 411
A +G NG GK+TLL+++ G + + GE + + Q + TV +++
Sbjct: 369 ALLGRNGAGKTTLLRTVAGELAPVAGEATA--HVPLRFLPQRLDVLDDGLTVAENVARFA 426
Query: 412 PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTES--NILILDEPTNH 469
P +R LAR + + + LSGGE+ + A LM E +L+LDEPTN+
Sbjct: 427 PGATNNRIRALLARFLFRGARADQQAATLSGGERFRAALAALMLAEPAPQLLMLDEPTNN 486
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGL 502
LD+ + +L AL Y G +L+ SH+ F E L
Sbjct: 487 LDMASVRQLTGALEAYEGALLVASHDLPFLESL 519
emb|CAB62765.1| (AL133424) putative ABC transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 544
Score = 118 bits (293), Expect = 1e-25
Identities = 135/526 (25%), Positives = 220/526 (41%), Gaps = 66/526 (12%)
Query: 15 DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQH 74
D +F ++SF + G G V NG GKST + +I G L P G V S +G++ Q
Sbjct: 18 DTPVFRNLSFTVGVGR-TGLVAPNGAGKSTLLKLIAGELRPTGGSVTVSGV--LGHLPQA 74
Query: 75 AVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSD 134
L G T E L ++A I A + + + A E+ + ++ D
Sbjct: 75 LPLTGGPTVAEVLG--------VDAVIR------AIDAVESGDVAEEHFATIGDDWD--- 117
Query: 135 FYLIDAKVEETARGLGLTPLL-DKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLD 193
I+ + LGL L D+ ++ LSGGQ TN LD
Sbjct: 118 ---IEERTRAQLDRLGLGALAPDRRLSTLSGGQIVSLGLAAQLLKRPDVLLLDEPTNNLD 174
Query: 194 EEHILWLKNYLKNYENAFILISHDVPFMDEVVNII------YHVHGLGITRYSMGYAEFE 247
L++ L +Y +L+SHD +D + I HG T Y +
Sbjct: 175 VAARDRLQDVLMDYTGCLLLVSHDRELLDRMERIAELDRGELRFHGGNFTAYEEAVRAEQ 234
Query: 248 RVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATS---------------------- 285
V E+ E + E + ++ R+ +N A +
Sbjct: 235 DVAEKNVRSAEQELKREKRELQQARERADRRASNAARNLKNAGLPRIFAGNMKRGAQESA 294
Query: 286 ---GQAKAREKKLAKMEIVE---TISEKPKPHFDFKFSRKPS-RLVFEAKDLVI--GYNE 336
GQ A AK + E ++ E+ + D +R P+ R +F + L I G +
Sbjct: 295 GRAGQTHANRVGEAKARLDEAERSLREEQRITLDLPETRVPAGRTLFLGERLRIRLGDRD 354
Query: 337 PLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEI 395
++L V ++IA G+NG GKSTLL+ + G + G++ + + + +AY Q +
Sbjct: 355 VFGDRGVDLTVRGPERIALTGANGTGKSTLLRLVDGDLDPEGGDITRADGR-VAYLSQRL 413
Query: 396 KN-PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
++TV ++ P +AE LAR + V +LSGGE+ + A ++
Sbjct: 414 DLLDDERTVAENFAAHAPRRPEAERMNLLARFLFRGARAHLPVGLLSGGERLRATLACVL 473
Query: 455 NTES--NILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
E ++L+LDEPTN+LD+ +L+ AL Y G ++VSH+ F
Sbjct: 474 CAEPAPHLLLLDEPTNNLDLVGVGQLESALNSYRGAFVVVSHDRRF 519
Score = 72.2 bits (174), Expect = 1e-11
Identities = 55/187 (29%), Positives = 88/187 (46%), Gaps = 26/187 (13%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK 396
P+ ++ V G + + NG GKSTLLK + G + G V + + Q +
Sbjct: 20 PVFRNLSFTVGVG-RTGLVAPNGAGKSTLLKLIAGELRPTGGSVTVSGV--LGHLPQALP 76
Query: 397 NPSQKTVLD-----------------DLWDEY-----PSWNQAE-LRGALARVGLTAKQI 433
TV + D+ +E+ W+ E R L R+GL A
Sbjct: 77 LTGGPTVAEVLGVDAVIRAIDAVESGDVAEEHFATIGDDWDIEERTRAQLDRLGLGALAP 136
Query: 434 ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVS 493
+ R+ LSGG+ L A + ++L+LDEPTN+LDV A++ L+ L++Y G +L+VS
Sbjct: 137 DRRLSTLSGGQIVSLGLAAQLLKRPDVLLLDEPTNNLDVAARDRLQDVLMDYTGCLLLVS 196
Query: 494 HEPEFYE 500
H+ E +
Sbjct: 197 HDRELLD 203
pir||S44975 lmrC protein - Streptomyces lincolnensis >gi|2127572|pir||S69834
lmrC protein - Streptomyces lincolnensis
>gi|487718|emb|CAA55774| (X79146) lmrC [Streptomyces
lincolnensis]
Length = 578
Score = 105 bits (260), Expect = 8e-22
Identities = 129/544 (23%), Positives = 217/544 (39%), Gaps = 82/544 (15%)
Query: 8 NLSHGFGDRA-IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKH 66
NLS + D +F+ +SF L G G VG NG GKST + + G L P G +
Sbjct: 10 NLSFSWPDETPVFDGLSFALGDGR-CGLVGPNGAGKSTLLRLAVGELTPTAGSI------ 62
Query: 67 RVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKM------AEMSEDEMNAAL 120
T + ++ + L I+ +++ + + A S D A
Sbjct: 63 ----------------TAQDMSVPAESLPLIDGTVDEAWRSLHRAALHAIESGDVDEAHF 106
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXX 179
VG D + I+ + LGL + LD+ + LSGGQ
Sbjct: 107 TTVG---------DHWDIEERTTIVLDRLGLGDVSLDRPLRSLSGGQVLAIGLAAQLLKR 157
Query: 180 XXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII------YHVHG 233
TN LD L ++ ++ A +++SHD +D V I ++G
Sbjct: 158 PDVLILDEPTNNLDLAARQRLYQVVEEWKGALLVVSHDRELLDRVDTIAELQASELRLYG 217
Query: 234 LGITRYSMGYA-EFERV---------------FEEKKAQLESLHNAQ------------V 265
T Y+ E E V ++AQ + A V
Sbjct: 218 GNFTAYTEAVELEQENVQRAVLRADRSCAATSARRRRAQERAQRRASNAKRNKVRRGCPV 277
Query: 266 AEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPS-RLV 324
+ +A L+ A+ Q + + K E + + E+ + + P+ R V
Sbjct: 278 STRAPLQRQAQESAGRAASVHQDRVSQAKAKLDEASQGMREEARLAITLPQTSVPAGRTV 337
Query: 325 FEAKDLVIGYNEPL---SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE 381
+ + Y E S ++L + ++IA +G NG GKSTLLK + G + G V
Sbjct: 338 LTCHEANVRYGERTLFTGSGVDLGIRGPERIALLGPNGSGKSTLLKLIAGELEPSSGTVT 397
Query: 382 KGNFQDIAYYEQEIKNPS-QKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVL 440
+ ++Y Q + +VLD+L P E+R LA+ ++ L
Sbjct: 398 APTDR-VSYLSQRLDLLDLDASVLDNLRRFAPHLQDGEVRYRLAQFLFRGDRVHRTAGWL 456
Query: 441 SGGEQAKLRFAKLMNTES--NILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
SGGE+ + A +++T+ +L+LDEPTN+LD+++ +L+ AL + G ++VSH+ F
Sbjct: 457 SGGERLRATLACVLSTDPAPQLLLLDEPTNNLDLNSAAQLENALNAFQGAFVVVSHDQAF 516
Query: 499 YEGL 502
+
Sbjct: 517 LRAI 520
Score = 55.0 bits (130), Expect = 1e-06
Identities = 55/224 (24%), Positives = 85/224 (37%), Gaps = 46/224 (20%)
Query: 2 SILNVKNLSHGFGDRAIF--EDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
++L + +G+R +F V + E I +G NG GKST + +I G L P G
Sbjct: 336 TVLTCHEANVRYGERTLFTGSGVDLGIRGPERIALLGPNGSGKSTLLKLIAGELEPSSGT 395
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
V + RV Y+ Q L D++A + D + A +D
Sbjct: 396 VT-APTDRVSYLSQRL-----------------DLLDLDASVLDNLRRFAPHLQD----- 432
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXX--XXXX 177
GE++ L + F +V TA LSGG+R +
Sbjct: 433 ----GEVRYRL--AQFLFRGDRVHRTA-------------GWLSGGERLRATLACVLSTD 473
Query: 178 XXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFM 221
TN LD L+N L ++ AF+++SHD F+
Sbjct: 474 PAPQLLLLDEPTNNLDLNSAAQLENALNAFQGAFVVVSHDQAFL 517
emb|CAA17599| (AL022002) hypothetical protein Rv1668c [Mycobacterium
tuberculosis]
Length = 372
Score = 102 bits (251), Expect = 9e-21
Identities = 91/398 (22%), Positives = 164/398 (40%), Gaps = 63/398 (15%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L + + + + +FE V+ + G IG VG NG+GKS+ + ++TG L PD G+V
Sbjct: 4 LLGAEAVHLAYPTQVVFEAVTLGVNDGARIGIVGRNGDGKSSLLGLLTGQLRPDSGRVTR 63
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
RV + Q L +T L
Sbjct: 64 RSGLRVNALSQTDTLDPNRTVGWTL----------------------------------- 88
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+G+ E + + ++ + GL D V+ LSGGQR +
Sbjct: 89 IGDQPEHQ-----WAGNPRIRDVVAGLVSDIAWDTPVSTLSGGQRRRVQLASLLVGEWDV 143
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNY----ENAFILISHDVPFMDEVVNIIYHVHGLGITR 238
TN+LD + I WL ++L+ ++++HD F+DEV + VH +
Sbjct: 144 IALDEPTNHLDIQGITWLADHLRRRWARNTGGLLVVTHDRWFLDEVATTTWEVHDGIVEP 203
Query: 239 YSMGYAEF--ERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLA 296
+ GYA + +RV ++ A +AK ++ + ++ A + A+ + K
Sbjct: 204 FEGGYAAYVLQRVERDRLT---------AAAEAKRQNLLRKELAWLRRGAPARTCKPKFR 254
Query: 297 KMEIVETISEKPKPHFDFKFSR-KPSRLVFEAKDLV---IGYN----EPLSSEINLKVES 348
+ I++ P P + ++ +RL + DL+ + Y P+ +I ++
Sbjct: 255 IEAANQLIADVPPPRNTVELAKLAAARLGKDVVDLLGVSVSYQPSGGRPVLRDIEWRIGP 314
Query: 349 GQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ 386
G++I +G+NG GKSTLL + G + G V+ +Q
Sbjct: 315 GERIGIVGANGAGKSTLLGLIAGTVQPGVGRVKPSGWQ 352
Score = 66.3 bits (159), Expect = 6e-10
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 24/189 (12%)
Query: 320 PSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE 379
P+++VFEA + L V G +I +G NG GKS+LL L G + G
Sbjct: 15 PTQVVFEA--------------VTLGVNDGARIGIVGRNGDGKSSLLGLLTGQLRPDSGR 60
Query: 380 VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQA---ELRGALARVGLTAKQI-ES 435
V + + + Q +TV L + P A +R +A GL + ++
Sbjct: 61 VTRRSGLRVNALSQTDTLDPNRTVGWTLIGDQPEHQWAGNPRIRDVVA--GLVSDIAWDT 118
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA----KEELKRALIEYPGTVLM 491
V LSGG++ +++ A L+ E +++ LDEPTNHLD+ + L+R G +L+
Sbjct: 119 PVSTLSGGQRRRVQLASLLVGEWDVIALDEPTNHLDIQGITWLADHLRRRWARNTGGLLV 178
Query: 492 VSHEPEFYE 500
V+H+ F +
Sbjct: 179 VTHDRWFLD 187
gb|AAD13681| (AF035434) elongation factor 3 [Aspergillus fumigatus]
Length = 781
Score = 98.7 bits (242), Expect = 1e-19
Identities = 98/405 (24%), Positives = 152/405 (37%), Gaps = 79/405 (19%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + S RL +G+ G +G NG GK+T M I + EG + KK V
Sbjct: 197 SLAYGAKILLNQTSLRLKRGQRYGLLGPNGTGKTTLMRAINNEQL--EG---FPKKDEVK 251
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+ L T + + + L D+ I + ++ A LE G L+E+
Sbjct: 252 TVYVEHDLDAADTEQTVIGWTMKKLRDVGIDI----------PQSDVEAKLEEFGFLREQ 301
Query: 130 LDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXT 189
+N + LSGG + K T
Sbjct: 302 FEN-------------------------PITSLSGGWKMKLALARAVFKNPDILLLDEPT 336
Query: 190 NYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERV 249
N+LD +++ WL+NYL N I++SHD F+D V+ + H + RY +EF +
Sbjct: 337 NHLDVKNVAWLENYLCNSPCTSIIVSHDGKFLDNVIQHVVHYERFKLKRYRGNLSEFVKK 396
Query: 250 FEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPK 309
++ E A E K + +E + K K
Sbjct: 397 VPSARSYYEL---------------------------SASDMEFKFPEPGFLEGVKTKAK 429
Query: 310 PHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSL 369
+ S + F+ G +P ++I +V G +IA IG NG GKSTL+ L
Sbjct: 430 AII------RVSNMSFQYP----GTPKPQLTDITFQVSLGSRIAVIGPNGAGKSTLVNVL 479
Query: 370 MGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSW 414
G + GEV + IAY +Q + + LD EY W
Sbjct: 480 TGELIPTSGEVYQHENIRIAYTKQHAF--AHRYHLDKTSSEYIQW 522
Score = 85.0 bits (207), Expect = 1e-15
Identities = 55/183 (30%), Positives = 101/183 (55%), Gaps = 14/183 (7%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++ +L+++ GQ+ +G NG GK+TL++++ L+G +K + + Y E ++
Sbjct: 205 LLNQTSLRLKRGQRYGLLGPNGTGKTTLMRAINN--EQLEGFPKKDEVKTV-YVEHDLDA 261
Query: 398 P-SQKTV-------LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLR 449
+++TV L D+ + P Q+++ L G +Q E+ + LSGG + KL
Sbjct: 262 ADTEQTVIGWTMKKLRDVGIDIP---QSDVEAKLEEFGFLREQFENPITSLSGGWKMKLA 318
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINC 509
A+ + +IL+LDEPTNHLDV L+ L P T ++VSH+ +F + ++ V++
Sbjct: 319 LARAVFKNPDILLLDEPTNHLDVKNVAWLENYLCNSPCTSIIVSHDGKFLDNVIQHVVHY 378
Query: 510 EEW 512
E +
Sbjct: 379 ERF 381
Score = 60.9 bits (145), Expect = 2e-08
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A GL A+ + SR+ LSGG++ K+ A ++++LDEPTN+LD D+
Sbjct: 639 EIEALCANFGLDAELVSHSRMRGLSGGQRVKVVLAACSWQRPHVVVLDEPTNYLDRDSLG 698
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
L +AL + G V++++H EF E L +V
Sbjct: 699 ALSKALKTFEGGVVIITHSREFTENLTEEV 728
Score = 58.9 bits (140), Expect = 9e-08
Identities = 32/96 (33%), Positives = 52/96 (53%), Gaps = 5/96 (5%)
Query: 2 SILNVKNLSHGFGD--RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N+S + + D++F++ G I +G NG GKST +N++TG L+P G+
Sbjct: 430 AIIRVSNMSFQYPGTPKPQLTDITFQVSLGSRIAVIGPNGAGKSTLVNVLTGELIPTSGE 489
Query: 60 VIWSKKHRVGYMDQHAVLGK---GKTTREALAEAFQ 92
V + R+ Y QHA + KT+ E + FQ
Sbjct: 490 VYQHENIRIAYTKQHAFAHRYHLDKTSSEYIQWRFQ 525
gi|153051 (M81802) 21kDa product of the C-terminal of MsrB [Staphylococcus
xylosus] >gi|383774|prf||1904213A erythromycin
resistance gene [Staphylococcus xylosus]
Length = 176
Score = 98.7 bits (242), Expect = 1e-19
Identities = 57/161 (35%), Positives = 96/161 (59%), Gaps = 9/161 (5%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLD--GEVEKGNFQDIAYYEQEIKN 397
+++ ++ G+ IA +G+NG+GK+TLL+++ I +D +V+ ++ +AY +
Sbjct: 3 TQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMR--- 59
Query: 398 PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
++L L DE S +++ R L +GL + +E VLSGGE+ KL A L +T+
Sbjct: 60 --DVSLLQYLMDETDS-SESFSRAILNNLGLN-EALERSCNVLSGGERTKLSLAVLFSTK 115
Query: 458 SNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
+N+LILDEPTN LD+ E L+ + +YPG +L SH+ F
Sbjct: 116 ANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRF 156
Score = 48.8 bits (114), Expect = 1e-04
Identities = 51/217 (23%), Positives = 77/217 (34%), Gaps = 51/217 (23%)
Query: 22 VSFRLLKGEHIGFVGANGEGKSTFMNIITGTL--VPDEGKVIWSKKHRVGYMDQHAVLGK 79
V F++ G++I VGANG GK+T + I + + KV + ++ Y D V
Sbjct: 5 VRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMAYYRQLAYEDMRDV--- 61
Query: 80 GKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLID 139
QYL D + SE A L N
Sbjct: 62 ---------SLLQYLMD-----------ETDSSESFSRAILNN----------------- 84
Query: 140 AKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILW 199
LGL L++ LSGG+RTK TN+LD + +
Sbjct: 85 ---------LGLNEALERSCNVLSGGERTKLSLAVLFSTKANMLILDEPTNFLDIKTLEA 135
Query: 200 LKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
L+ ++ Y + SHD F+ V + + + G I
Sbjct: 136 LEMFMNKYPGIILFTSHDTRFVKHVSDKKWELTGQSI 172
gb|AAF31422.1| (AF213382) ATP-binding cassette protein [Mus musculus]
Length = 253
Score = 96.3 bits (236), Expect = 5e-19
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 3/177 (1%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPS 399
+ + ++ ++A +G NG GKSTLLK L G + DG + K + I Y Q ++
Sbjct: 44 NNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQL 103
Query: 400 QKTV--LDDLWDEYPSWNQAE-LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
+ L+ + YP + E +R + R GLT KQ S + LS G++ ++ A L
Sbjct: 104 DLDLSPLEYMMKCYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLARQ 163
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
++L LDEPTNHLD++ + L A+ E+ G +++VSH+ + + ++ CE+ T
Sbjct: 164 NPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFILIQQVAQEIWVCEKQT 220
Score = 49.6 bits (116), Expect = 6e-05
Identities = 57/271 (21%), Positives = 103/271 (37%), Gaps = 54/271 (19%)
Query: 3 ILNVKNLSHGF--GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
++ V+N+S + I+ ++ F + + VG NG GKST + ++TG L+P +G +
Sbjct: 25 VIMVQNVSFKYTKDGPCIYNNLEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMI 84
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
++G QH Q D++ + MK
Sbjct: 85 RKHSHVKIGRYHQH----------------LQEQLDLDLSPLEYMMKC------------ 116
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKD----VAELSGGQRTKXXXXXXX 176
E++E+ EE + +G L K + LS GQ+ +
Sbjct: 117 --YPEIKEK-------------EEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLA 161
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TN+LD E I L + + +E +L+SHD + +V I+ I
Sbjct: 162 RQNPHMLFLDEPTNHLDIETIDALADAINEFEGGMMLVSHDFILIQQVAQEIWVCEKQTI 221
Query: 237 TRYS---MGYAEF--ERVFEEKKAQLESLHN 262
T++ + Y E ++ +E+ + HN
Sbjct: 222 TKWPGDILAYKEHLKSKLVDEEPQLTKRTHN 252
dbj|BAA33959| (AB012141) translation elongation factor3 [Candida glabrata]
Length = 1045
Score = 93.2 bits (228), Expect = 4e-18
Identities = 130/576 (22%), Positives = 219/576 (37%), Gaps = 130/576 (22%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + RL +G G G NG GKST M I G
Sbjct: 437 SLAYGAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAIAN-----------------G 479
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+D G T E + +E I+ T+ A+ S + + E VG +
Sbjct: 480 QVD-------GFPTPEECMTVY-----VEHDIDGTH---ADTSVLDFVVSSE-VGTKEA- 522
Query: 130 LDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
I AK+ E G T +++ ++ LSGG + K
Sbjct: 523 --------ITAKLVE----FGFTEEMINMPISSLSGGWKMKLALARAVLKNADILLLDEP 570
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS-------- 240
TN+LD ++ WL NYL +++SHD F+D V I H GL + +Y
Sbjct: 571 TNHLDTVNVAWLVNYLNTCGITSVIVSHDSGFLDNVCQYIIHYEGLKLRKYKGNLSEFVK 630
Query: 241 ----------MGYAEFERVFEE---------KKAQLESLHN-------------AQVAEQ 268
+G ++ E F E K+ + + N + ++ Q
Sbjct: 631 KCPTAQSYYELGASDLEFKFPEPGYLEGVKTKQKAIVKVSNMTFQYPGTSKPQISDISFQ 690
Query: 269 AKLKDFIARKKANVA---------------TSGQAKARE-------KKLAKMEIVETISE 306
L IA N A TSG+ E K+ A I + +
Sbjct: 691 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 750
Query: 307 KPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIAFIGSNGIGKST- 364
P + ++F R + + I N+ + K+E + ++IA I + K+T
Sbjct: 751 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHARRKFKNTY 810
Query: 365 ------LLKSLMGL-----IPSLDGE---VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDE 410
LL +G+ +P + + + +G + + + + K L +
Sbjct: 811 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL--VESHSKMVTEVDMKEALAS--GQ 866
Query: 411 YPSWNQAELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
+ + E+ A +GL AK + SR+ LSGG++ KL A ++++LDEPTN+
Sbjct: 867 FRPLTRREIEEHCAMLGLDAKLVSHSRIRGLSGGQKVKLVLAACSWQRPHLIVLDEPTNY 926
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
LD D+ L +AL + G V++++H EF + L +
Sbjct: 927 LDRDSLGALSKALKAFEGGVIIITHSAEFTKNLTEE 962
Score = 68.3 bits (164), Expect = 1e-10
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 3/173 (1%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++ L+++ G++ G NG GKSTL++++ +DG + Y E +I
Sbjct: 445 LLNKTQLRLKRGRRYGLCGPNGAGKSTLMRAIAN--GQVDGFPTPEECMTV-YVEHDIDG 501
Query: 398 PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
T + D + + L G T + I + LSGG + KL A+ +
Sbjct: 502 THADTSVLDFVVSSEVGTKEAITAKLVEFGFTEEMINMPISSLSGGWKMKLALARAVLKN 561
Query: 458 SNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E
Sbjct: 562 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSVIVSHDSGFLDNVCQYIIHYE 614
Score = 64.8 bits (155), Expect = 2e-09
Identities = 90/375 (24%), Positives = 141/375 (37%), Gaps = 82/375 (21%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + + D+SF+ I +G NG GKST +N++TG L+P G+
Sbjct: 665 AIVKVSNMTFQYPGTSKPQISDISFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 724
Query: 60 VIWSKKHRVGYMDQHAV--------------------LGKGKTT--------REALAEAF 91
V + R+ Y+ QHA G+ + T E AEA
Sbjct: 725 VYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAM 784
Query: 92 QYLFDIEA------------QINDTY-------------MK----MAEMSED-------- 114
+F IE + +TY MK + MS D
Sbjct: 785 NKIFKIEGTPRRIAGIHARRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGE 844
Query: 115 --EMNAALENVGELQEELDNSDFY-LIDAKVEETARGLGLTPLL--DKDVAELSGGQRTK 169
E ++ + +++E L + F L ++EE LGL L + LSGGQ+ K
Sbjct: 845 LVESHSKMVTEVDMKEALASGQFRPLTRREIEEHCAMLGLDAKLVSHSRIRGLSGGQKVK 904
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIY 229
TNYLD + + L LK +E I+I+H F + +
Sbjct: 905 LVLAACSWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGVIIITHSAEFTKNLTEEFW 964
Query: 230 HVHGLGIT----RYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATS 285
V IT + G R+ EKK E +A + A K +KK +
Sbjct: 965 AVKDGKITPSGHNWVSGQGAGPRI--EKKEDEEDKFDAMGNKIAGGK----KKKKLSSAE 1018
Query: 286 GQAKAREKKLAKMEI 300
+ K +E+ K E+
Sbjct: 1019 LRRKKKERMKKKKEL 1033
ref|NP_014384.1|YNL014W| Ynl014wp >gi|1706591|sp|P53978|EF3B_YEAST ELONGATION FACTOR 3B
(EF-3B) >gi|2119783|pir||S62926 probable membrane
protein YNL014w - yeast (Saccharomyces cerevisiae)
>gi|1301836|emb|CAA95874| (Z71290) ORF YNL014w
[Saccharomyces cerevisiae]
Length = 1044
Score = 93.2 bits (228), Expect = 4e-18
Identities = 127/576 (22%), Positives = 223/576 (38%), Gaps = 128/576 (22%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + RL +G G G NG GKST M I G
Sbjct: 437 SLAYGAKILLNKTQLRLKRGRRYGLCGPNGAGKSTLMRSIAN-----------------G 479
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+D G T++ + +E I++T+ M+ + D + + NVG
Sbjct: 480 QVD-------GFPTQDECRTVY-----VEHDIDNTHSDMSVL--DFVYSG--NVGTKD-- 521
Query: 130 LDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXT 189
+I +K++E +++ +A LSGG + K T
Sbjct: 522 -------VITSKLKEFGFS---DEMIEMPIASLSGGWKMKLALARAVLKDADILLLDEPT 571
Query: 190 NYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS--------- 240
N+LD ++ WL NYL +++SHD F+D+V I H GL + +Y
Sbjct: 572 NHLDTVNVEWLVNYLNTCGITSVIVSHDSGFLDKVCQYIIHYEGLKLRKYKGNLSEFVQK 631
Query: 241 ---------MGYAEFERVF---------EEKKAQLESLHN-------------AQVAEQA 269
+G ++ E F + K+ + + N + V Q
Sbjct: 632 CPTAQSYYELGASDLEFQFPTPGYLEGVKTKQKAIVKVSNMTFQYPGTTKPQVSDVTFQC 691
Query: 270 KLKDFIARKKANVA---------------TSGQAKARE-------KKLAKMEIVETISEK 307
L IA N A TSG+ E K+ A I + +
Sbjct: 692 SLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKT 751
Query: 308 PKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIAFIGSNGIGKST-- 364
P + ++F R + + I N+ + K+E + +++A I S K+T
Sbjct: 752 PSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRVAGIHSRRKFKNTYE 811
Query: 365 -----LLKSLMGL-----IPSLDGE---VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEY 411
LL +G+ +P + + + +G I + + + K L ++
Sbjct: 812 YECSFLLGENIGMKSERWVPMMSVDNAWLPRGEL--IESHSKMVAEIDMKEALAS--GQF 867
Query: 412 PSWNQAELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
+ + E+ A +GL ++ + SR+ LSGG++ KL A ++++LDEPTN+L
Sbjct: 868 RALTRKEIELHCAMLGLDSELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYL 927
Query: 471 DVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
D D+ L +AL + G V++++H EF + L +V
Sbjct: 928 DRDSLGALSKALKAFEGGVIIITHSAEFTKNLTDEV 963
Score = 75.7 bits (183), Expect = 8e-13
Identities = 56/177 (31%), Positives = 91/177 (50%), Gaps = 11/177 (6%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ L+++ G++ G NG GKSTL++S+ +G+V+ QD Y E +
Sbjct: 445 LLNKTQLRLKRGRRYGLCGPNGAGKSTLMRSIA------NGQVDGFPTQDECRTVYVEHD 498
Query: 395 IKNP-SQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
I N S +VLD ++ + L G + + IE + LSGG + KL A+
Sbjct: 499 IDNTHSDMSVLDFVYSGNVGTKDV-ITSKLKEFGFSDEMIEMPIASLSGGWKMKLALARA 557
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ +++IL+LDEPTNHLD E L L T ++VSH+ F + + +I+ E
Sbjct: 558 VLKDADILLLDEPTNHLDTVNVEWLVNYLNTCGITSVIVSHDSGFLDKVCQYIIHYE 614
dbj|BAA29953| (AP000003) 590aa long hypothetical transport protein [Pyrococcus
horikoshii]
Length = 590
Score = 88.9 bits (217), Expect = 9e-17
Identities = 114/489 (23%), Positives = 201/489 (40%), Gaps = 96/489 (19%)
Query: 29 GEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREA-L 87
G +G VG NG GK+T + I+ G L+P+ D + K R + L
Sbjct: 99 GMVVGIVGPNGTGKTTAVKILAGQLIPNL------------CCDNDSWDDVIKAFRGSEL 146
Query: 88 AEAFQYLF--DIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEET 145
F+ L +I+ + Y+ + A VGEL +++D + K EE
Sbjct: 147 QNYFEKLKNGEIKPVVKPQYVDLLP------KAVKGKVGELLKKVDET------GKFEEI 194
Query: 146 ARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLK 205
+ L L +L++++ +LSGG+ + ++YLD L + ++
Sbjct: 195 VKVLELEKVLEREIDQLSGGELQRVAIAAAILRKAHFYFFDEPSSYLDIRQRLNVARVIR 254
Query: 206 NYEN---AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHN 262
+ A +++ HD+ +D + +I++ V+G +F + K ++
Sbjct: 255 RLADEGKAVLVVEHDLAVLDYLSDIVHIVYG---------EPGVYGIFSQPKGTRNGINE 305
Query: 263 AQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSR 322
Q LKD E + +P ++ KF++ R
Sbjct: 306 FL---QGYLKD----------------------------ENVRFRP---YEIKFTKLSER 331
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVE-------SGQKIAFIGSNGIGKSTLLKSLMGLIPS 375
+ E + LV Y + + K+E G+ I +G NGIGK+T +K L G+
Sbjct: 332 VEVERETLV-EYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP 390
Query: 376 LDGEVEKGNFQDIAYYEQEIKNPSQKTVLD-----DLWDEYPSWNQAELRGALARVGLTA 430
+G+VE +AY Q IK + TV D D ++ + EL L + L
Sbjct: 391 TEGKVEWD--LTVAYKPQYIKAEYEGTVYDLLSKIDASKLNSNFYKTELLKPLGIIDLYD 448
Query: 431 KQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA----LIEYP 486
K + LSGGE ++ A + +++I +LDEP+ +LDV+ + RA + +
Sbjct: 449 KNVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLATSRAIRHLMEKNE 504
Query: 487 GTVLMVSHE 495
T L+V H+
Sbjct: 505 KTALVVEHD 513
Score = 60.1 bits (143), Expect = 4e-08
Identities = 54/201 (26%), Positives = 83/201 (40%), Gaps = 47/201 (23%)
Query: 28 KGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREAL 87
KGE IG VG NG GK+TF+ ++ G P EGKV W V Y Q+
Sbjct: 363 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL--TVAYKPQY-----------IK 409
Query: 88 AEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETAR 147
AE ++D+ ++I+ + + NS+FY E +
Sbjct: 410 AEYEGTVYDLLSKIDASKL-------------------------NSNFY-----KTELLK 439
Query: 148 GLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHIL----WLKNY 203
LG+ L DK+V ELSGG+ + + YLD E L +++
Sbjct: 440 PLGIIDLYDKNVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLATSRAIRHL 499
Query: 204 LKNYENAFILISHDVPFMDEV 224
++ E +++ HDV +D V
Sbjct: 500 MEKNEKTALVVEHDVLMIDYV 520
Score = 53.9 bits (127), Expect = 3e-06
Identities = 48/187 (25%), Positives = 88/187 (46%), Gaps = 25/187 (13%)
Query: 346 VESGQKIAFIGSNGIGKSTLLKSLMG-LIPSL-------DGEVEKGNFQDIAYYEQEIKN 397
V+ G + +G NG GK+T +K L G LIP+L D ++ ++ Y +++KN
Sbjct: 96 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCCDNDSWDDVIKAFRGSELQNYFEKLKN 155
Query: 398 PSQKTVLDDLW-DEYPSWNQAELRGALARVGLTAK------------QIESRVYVLSGGE 444
K V+ + D P + ++ L +V T K +E + LSGGE
Sbjct: 156 GEIKPVVKPQYVDLLPKAVKGKVGELLKKVDETGKFEEIVKVLELEKVLEREIDQLSGGE 215
Query: 445 QAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA---LIEYPGTVLMVSHEPEFYEG 501
++ A + +++ DEP+++LD+ + + R L + VL+V H+ +
Sbjct: 216 LQRVAIAAAILRKAHFYFFDEPSSYLDIRQRLNVARVIRRLADEGKAVLVVEHDLAVLDY 275
Query: 502 LVSDVIN 508
L SD+++
Sbjct: 276 L-SDIVH 281
emb|CAA05601| (AJ002571) YkoD [Bacillus subtilis] >gi|2633676|emb|CAB13179|
(Z99110) similar to cation ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 490
Score = 88.9 bits (217), Expect = 9e-17
Identities = 124/517 (23%), Positives = 206/517 (38%), Gaps = 69/517 (13%)
Query: 3 ILNVKNLSHGF--GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
+L V+ LS + ++ +F+D+SF L KGE + +G +G GKS+ + G L P+
Sbjct: 7 LLTVEQLSFSYEEDEKPVFQDISFELQKGECVLLLGPSGCGKSSLALCLNG-LYPEACD- 64
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
G H L + T +E + Q D M + EDE+ L
Sbjct: 65 --------GIQSGHVFLFQKPVTDAETSETITQHAGVVFQDPDQQFCMLTV-EDEIAFGL 115
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
EN+ +EE+ K+ L +T L +K ++ LSGGQ+ K
Sbjct: 116 ENLQIPKEEMTE--------KINAVLGKLRITHLKEKMISTLSGGQKQKVALACILAMEP 167
Query: 181 XXXXXXXXTNYLD----EEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
T+ LD E + +K+ + + ++I H +DE I L
Sbjct: 168 ELIILDEPTSLLDPFSAREFVHLMKDLQREKGFSLLVIEHQ---LDEWAPWIERTIVLD- 223
Query: 237 TRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLA 296
+ K L+ L +A+ KK +A +EK
Sbjct: 224 --------------KSGKKALDGLTKNLFQHEAE-----TLKKLGIAIPKVCHLQEKLSM 264
Query: 297 KMEIV-ETISEKPKPHFDFKFSRKPS-RLVFEAKDLVIGYNEP-LSSEINLKVESGQKIA 353
+ E + ++P P K + PS V E L + + +I+ + G A
Sbjct: 265 PFTLSKEMLFKEPIPAGHVKKKKAPSGESVLEVSSLSFARGQQAIFKDISFSLREGSLTA 324
Query: 354 FIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIK--------NPSQKTVLD 405
+G NG GKSTLL L L+ G++ + Y E+E++ NP + V D
Sbjct: 325 LVGPNGTGKSTLLSVLASLMKPQSGKILLYDQPLQKYKEKELRKRMGFVFQNPEHQFVTD 384
Query: 406 DLWDEYPSWNQA------ELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESN 459
++DE +A + + L R GL A + + +S G++ +L A ++ +
Sbjct: 385 TVYDELLFGQKANAETEKKAQHLLQRFGL-AHLADHHPFAISQGQKRRLSVATMLMHDVK 443
Query: 460 ILILDEPTNHLDVDAKEELKRAL--IEYPGT-VLMVS 493
+L+LDEPT D E + I+ GT VLM++
Sbjct: 444 VLLLDEPTFGQDARTAAECMEMIQRIKAEGTAVLMIT 480
Score = 57.4 bits (136), Expect = 3e-07
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
S+L V +LS G +AIF+D+SF L +G VG NG GKST ++++ + P GK++
Sbjct: 293 SVLEVSSLSFARGQQAIFKDISFSLREGSLTALVGPNGTGKSTLLSVLASLMKPQSGKIL 352
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQ 92
DQ K K R+ + FQ
Sbjct: 353 --------LYDQPLQKYKEKELRKRMGFVFQ 375
Score = 51.2 bits (120), Expect = 2e-05
Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 29/188 (15%)
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF---------- 385
+P+ +I+ +++ G+ + +G +G GKS+L L GL P ++ G+
Sbjct: 22 KPVFQDISFELQKGECVLLLGPSGCGKSSLALCLNGLYPEACDGIQSGHVFLFQKPVTDA 81
Query: 386 ---QDIAYYEQEI-KNPSQKTVLDDLWDEY---------PSWNQAE-LRGALARVGLTAK 431
+ I + + ++P Q+ + + DE P E + L ++ +T
Sbjct: 82 ETSETITQHAGVVFQDPDQQFCMLTVEDEIAFGLENLQIPKEEMTEKINAVLGKLRITHL 141
Query: 432 QIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE----LKRALIEYPG 487
+ E + LSGG++ K+ A ++ E ++ILDEPT+ LD + E +K E
Sbjct: 142 K-EKMISTLSGGQKQKVALACILAMEPELIILDEPTSLLDPFSAREFVHLMKDLQREKGF 200
Query: 488 TVLMVSHE 495
++L++ H+
Sbjct: 201 SLLVIEHQ 208
emb|CAB56127.1| (AL117669) putative ABC transport ATP-binding subunit [Streptomyces
coelicolor A3(2)]
Length = 231
Score = 87.4 bits (213), Expect = 3e-16
Identities = 58/228 (25%), Positives = 103/228 (44%), Gaps = 4/228 (1%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
S L + +++ + R + + VS L GE G +G NG GKST + I+ G PD G+
Sbjct: 4 SQLTLSHVTKRYAGRTVLDQVSLTLKPGEKAGLIGDNGAGKSTLLRIVAGQERPDSGEAT 63
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+ +G + Q L T ++A+ + L +EA++ + + E AA
Sbjct: 64 VTAAGGIGCLPQSVPLPPTATVQDAVDLSLADLRALEAELRRAEQALGAGEDPEALAAYT 123
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQRTKXXXXXXXXXXX 180
+ E E D D D +V+ LGL L ++ + LSGG+R++
Sbjct: 124 VLVERYEARDGHD---ADRRVDIALHHLGLPALRRERRLGTLSGGERSRLALAGVLAGRP 180
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN LD++ + WL+ L+ + + ++HD F++ + + I
Sbjct: 181 EVLLLDEPTNDLDDQAVEWLETQLRAHRGTVLAVTHDRVFLERLTSTI 228
Score = 78.0 bits (189), Expect = 2e-13
Identities = 65/207 (31%), Positives = 91/207 (43%), Gaps = 40/207 (19%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQ 400
+++L ++ G+K IG NG GKSTLL+ + G GE I Q + P
Sbjct: 23 QVSLTLKPGEKAGLIGDNGAGKSTLLRIVAGQERPDSGEATVTAAGGIGCLPQSVPLPPT 82
Query: 401 KTVLD--DLWDEYPSWNQAELRGA------------------------------------ 422
TV D DL +AELR A
Sbjct: 83 ATVQDAVDLSLADLRALEAELRRAEQALGAGEDPEALAAYTVLVERYEARDGHDADRRVD 142
Query: 423 --LARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR 480
L +GL A + E R+ LSGGE+++L A ++ +L+LDEPTN LD A E L+
Sbjct: 143 IALHHLGLPALRRERRLGTLSGGERSRLALAGVLAGRPEVLLLDEPTNDLDDQAVEWLET 202
Query: 481 ALIEYPGTVLMVSHEPEFYEGLVSDVI 507
L + GTVL V+H+ F E L S ++
Sbjct: 203 QLRAHRGTVLAVTHDRVFLERLTSTIL 229
ref|NP_015098.1|NEW1| New1p >gi|2132238|pir||S65245 hypothetical protein YPL226w - yeast
(Saccharomyces cerevisiae) >gi|1370468|emb|CAA97941|
(Z73582) ORF YPL226w [Saccharomyces cerevisiae]
Length = 1196
Score = 86.6 bits (211), Expect = 4e-16
Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 7/177 (3%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++ NL++ G + G NG GKSTL++++ LDG +K + + E +++
Sbjct: 586 LLNKTNLRLLKGHRYGLCGRNGAGKSTLMRAIAN--GQLDGFPDKDTLRT-CFVEHKLQG 642
Query: 398 PSQKTVLDD---LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
L L +E S ++ E+ AL VG ++ V LSGG + KL A+ M
Sbjct: 643 EEGDLDLVSFIALDEELQSTSREEIAAALESVGFDEERRAQTVGSLSGGWKMKLELARAM 702
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPG-TVLMVSHEPEFYEGLVSDVINCE 510
+++IL+LDEPTNHLDV + L+ L+E+ T L+VSH+ F + + +D+I+ E
Sbjct: 703 LQKADILLLDEPTNHLDVSNVKWLEEYLLEHTDITSLIVSHDSGFLDTVCTDIIHYE 759
Score = 81.1 bits (197), Expect = 2e-14
Identities = 96/393 (24%), Positives = 155/393 (39%), Gaps = 92/393 (23%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLV---PDEGKVIWSK 64
+ S +G R + + RLLKG G G NG GKST M I + PD+ +
Sbjct: 576 DFSLAYGSRMLLNKTNLRLLKGHRYGLCGRNGAGKSTLMRAIANGQLDGFPDKDTL---- 631
Query: 65 KHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVG 124
R +++ H + G+ E + ++ ++ ++ T S +E+ AALE+VG
Sbjct: 632 --RTCFVE-HKLQGE-----EGDLDLVSFIA-LDEELQST-------SREEIAAALESVG 675
Query: 125 ELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXX 184
+E R + V LSGG + K
Sbjct: 676 -----------------FDEERRA--------QTVGSLSGGWKMKLELARAMLQKADILL 710
Query: 185 XXXXTNYLDEEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGY 243
TN+LD ++ WL+ YL + + +++SHD F+D V I H + Y
Sbjct: 711 LDEPTNHLDVSNVKWLEEYLLEHTDITSLIVSHDSGFLDTVCTDIIHYENKKLAYYKGNL 770
Query: 244 AEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKK---ANVATSGQAKAREKKLAKMEI 300
A F E+K + +S + L D A+ + + T K+ + +AKM
Sbjct: 771 A----AFVEQKPEAKSYYT--------LTDSNAQMRFPPPGILTG--VKSNTRAVAKMTD 816
Query: 301 VETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGI 360
V F + ++KPS S ++ + ++A +G NG
Sbjct: 817 VT---------FSYPGAQKPS-----------------LSHVSCSLSLSSRVACLGPNGA 850
Query: 361 GKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
GKSTL+K L G + +G+VEK I Y Q
Sbjct: 851 GKSTLIKLLTGELVPNEGKVEKHPNLRIGYIAQ 883
Score = 58.2 bits (138), Expect = 2e-07
Identities = 79/361 (21%), Positives = 134/361 (36%), Gaps = 76/361 (21%)
Query: 22 VSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVL---- 77
VS L + +G NG GKST + ++TG LVP+EGKV R+GY+ QHA+
Sbjct: 832 VSCSLSLSSRVACLGPNGAGKSTLIKLLTGELVPNEGKVEKHPNLRIGYIAQHALQHVNE 891
Query: 78 GKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV------GEL----- 126
K KT + L +Q+ D E + ++ ++SEDE + + G+
Sbjct: 892 HKEKTANQYLQWRYQFGDDREVLLKES----RKISEDEKEMMTKEIDIDDGRGKRAIEAI 947
Query: 127 --QEELDNSDFYLIDAKV-----------------------------EETARGLGLTPL- 154
+++L S Y + K E + GLG L
Sbjct: 948 VGRQKLKKSFQYEVKWKYWKPKYNSWVPKDVLVEHGFEKLVQKFDDHEASREGLGYRELI 1007
Query: 155 ------------LDKDVA------ELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEH 196
LD ++A LSGGQ K TNYLD +
Sbjct: 1008 PSVITKHFEDVGLDSEIANHTPLGSLSGGQLVKVVIAGAMWNNPHLLVLDEPTNYLDRDS 1067
Query: 197 ILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQ 256
+ L ++++ ++ISH+ F+ + + V + + + + + A
Sbjct: 1068 LGALAVAIRDWSGGVVMISHNNEFVGALCPEQWIVENGKMVQKGSAQVDQSKFEDGGNAD 1127
Query: 257 LESLHNAQVAEQAKLKD-------FIARKKANVATSGQAKAREKKLAKMEIVETISEKPK 309
L + +A+ + D RKK + +A ++L +E + + PK
Sbjct: 1128 AVGLKASNLAKPSVDDDDSPANIKVKQRKKRLTRNEKKLQAERRRLRYIEWLSSPKGTPK 1187
Query: 310 P 310
P
Sbjct: 1188 P 1188
Score = 52.3 bits (123), Expect = 9e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFY 499
LSGG+ K+ A M ++L+LDEPTN+LD D+ L A+ ++ G V+M+SH EF
Sbjct: 1033 LSGGQLVKVVIAGAMWNNPHLLVLDEPTNYLDRDSLGALAVAIRDWSGGVVMISHNNEFV 1092
Query: 500 EGL 502
L
Sbjct: 1093 GAL 1095
gb|AAC13304.2| (AF057023) translation elongation factor 3 [Ajellomyces capsulatus]
Length = 332
Score = 86.2 bits (210), Expect = 6e-16
Identities = 88/384 (22%), Positives = 140/384 (35%), Gaps = 77/384 (20%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + L +G+ G +G NG GKST M I V EG + KK +V
Sbjct: 6 SLAYGAKILLNQTHLHLKRGQRYGLLGPNGSGKSTLMRAINNEQV--EG---FPKKDQVK 60
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+ L T + + + L ++ I S D + A L G L+E+
Sbjct: 61 TVFVEHDLDAADTEQTVIGWTQKKLAEVGVNI----------STDAIEARLVEFGFLREQ 110
Query: 130 LDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXT 189
+ + LSGG + K T
Sbjct: 111 FEGP-------------------------ITSLSGGWKMKLALARAVLKNADILLLDEPT 145
Query: 190 NYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERV 249
N+LD ++ WL+NYL N I++SHD F++ VV + H + RY EF +
Sbjct: 146 NHLDVRNVAWLENYLINSPCTCIIVSHDSKFLNNVVQHVIHYERFKLRRYRGNLTEFAKR 205
Query: 250 FEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPK 309
++ E +A E K + +E + K K
Sbjct: 206 CPSARSYFEL---------------------------EASEMEFKFPEPGFLEGVKTKAK 238
Query: 310 PHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSL 369
+ + + F+ G ++P ++I + G +IA IG NG GKSTL+ L
Sbjct: 239 AIV------RVNNMSFQYP----GTSKPQIADITFQCSLGSRIAVIGPNGAGKSTLVNVL 288
Query: 370 MGLIPSLDGEVEKGNFQDIAYYEQ 393
G + G++ IAY +Q
Sbjct: 289 TGELIPTSGDIYHHENIRIAYIKQ 312
Score = 83.5 bits (203), Expect = 4e-15
Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 22/190 (11%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
L ++ +L ++ GQ+ +G NG GKSTL++++ ++G +K + +
Sbjct: 14 LLNQTHLHLKRGQRYGLLGPNGSGKSTLMRAINN--EQVEGFPKKDQVKTVFVEHDLDAA 71
Query: 398 PSQKTVLDDLWDEYPSWNQAEL------------RGALARVGLTAKQIESRVYVLSGGEQ 445
+++TV+ W Q +L L G +Q E + LSGG +
Sbjct: 72 DTEQTVI--------GWTQKKLAEVGVNISTDAIEARLVEFGFLREQFEGPITSLSGGWK 123
Query: 446 AKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
KL A+ + ++IL+LDEPTNHLDV L+ LI P T ++VSH+ +F +V
Sbjct: 124 MKLALARAVLKNADILLLDEPTNHLDVRNVAWLENYLINSPCTCIIVSHDSKFLNNVVQH 183
Query: 506 VINCEEWTTR 515
VI+ E + R
Sbjct: 184 VIHYERFKLR 193
Score = 56.2 bits (133), Expect = 6e-07
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N+S + + D++F+ G I +G NG GKST +N++TG L+P G
Sbjct: 239 AIVRVNNMSFQYPGTSKPQIADITFQCSLGSRIAVIGPNGAGKSTLVNVLTGELIPTSGD 298
Query: 60 VIWSKKHRVGYMDQHA 75
+ + R+ Y+ QHA
Sbjct: 299 IYHHENIRIAYIKQHA 314
sp|Q58129|Y719_METJA HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0719
>gi|2127731|pir||G64389 ABC transporter ATP-binding
protein - Methanococcus jannaschii >gi|1591435 (U67518)
RNase L inhibitor [Methanococcus jannaschii]
Length = 600
Score = 86.2 bits (210), Expect = 6e-16
Identities = 105/480 (21%), Positives = 196/480 (39%), Gaps = 76/480 (15%)
Query: 32 IGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAF 91
+G +G NG GKST + I+ G L+P+ GK Y D V+ + T L E F
Sbjct: 113 VGIIGQNGIGKSTVLRILAGELIPNLGK----HDKEPNYDD---VIKYFRGTE--LQEYF 163
Query: 92 QYLFD--IEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGL 149
+ L + ++A Y+ + VG+L +++D K +E L
Sbjct: 164 EKLKNKGVKAIHKVQYVDILP------KVVKGKVGDLLKKVDEK------GKFDEVVEKL 211
Query: 150 GLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYEN 209
L +LD+++++LSGG+ + +++LD ++ N
Sbjct: 212 ELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEPSSWLDIRQRFNAARLIREL-N 270
Query: 210 AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQA 269
+++ HD+ +D + + I+ ++G+ + + RV
Sbjct: 271 KVVVVEHDLIVLDYLSDYIHIMYGVPSAYGIVSMPKSVRV-------------------- 310
Query: 270 KLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKD 329
N G+ + + K E I + + DFK +P L + +
Sbjct: 311 ---------GINEYLYGELREENIRFRK----EPIIFEKRAVIDFK--NRPILLSYSSMK 355
Query: 330 LVIGYNEPLSSEINLKVESG-----QKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN 384
+G + L+V G + I +G NGIGK+T +K L G+I +GEV K
Sbjct: 356 KTLG-------DFKLEVSGGTIYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEG 408
Query: 385 FQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGE 444
++Y Q I P ++DL + + + + + K ++ V LSGGE
Sbjct: 409 DIKVSYKPQYI-TPDYDGTVEDLLSSITNIHTSYYKSEIINPLQLEKLLDREVRELSGGE 467
Query: 445 QAKLRFAKLMNTESNILILDEPTNHLDVDAK----EELKRALIEYPGTVLMVSHEPEFYE 500
++ A ++ +++I +LDEP+ LDV+ + + ++R E + +V H+ F +
Sbjct: 468 LQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVIRRIADEKEAGMFVVDHDILFQD 527
Score = 57.8 bits (137), Expect = 2e-07
Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 47/203 (23%)
Query: 26 LLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTRE 85
+ KGE IG +G NG GK+TF+ ++ G + PDEG+VI +V Y Q+ T +
Sbjct: 370 IYKGEVIGILGPNGIGKTTFVKLLAGVIKPDEGEVIKEGDIKVSYKPQYITPDYDGTVED 429
Query: 86 ALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEET 145
L+ I+ +Y K E
Sbjct: 430 LLSSI--------TNIHTSYYK-----------------------------------SEI 446
Query: 146 ARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLK 205
L L LLD++V ELSGG+ + + +LD E L + ++
Sbjct: 447 INPLQLEKLLDREVRELSGGELQRVAIAACLSRDADIYLLDEPSAFLDVEQRLRVSKVIR 506
Query: 206 NY----ENAFILISHDVPFMDEV 224
E ++ HD+ F D +
Sbjct: 507 RIADEKEAGMFVVDHDILFQDYI 529
Score = 50.4 bits (118), Expect = 4e-05
Identities = 51/189 (26%), Positives = 82/189 (42%), Gaps = 24/189 (12%)
Query: 330 LVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMG-LIPSLDGEVEKGNFQDI 388
+V Y + L + + IG NGIGKST+L+ L G LIP+L ++ N+ D+
Sbjct: 91 IVHSYGQNRFKLFGLVIPRDGVVGIIGQNGIGKSTVLRILAGELIPNLGKHDKEPNYDDV 150
Query: 389 ---------AYYEQEIKNPSQKTVLDDLW-DEYPSWNQAELRGALARVG----------- 427
Y +++KN K + + D P + ++ L +V
Sbjct: 151 IKYFRGTELQEYFEKLKNKGVKAIHKVQYVDILPKVVKGKVGDLLKKVDEKGKFDEVVEK 210
Query: 428 LTAKQIESR-VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
L K I R + LSGGE ++ A +I DEP++ LD+ + R LI
Sbjct: 211 LELKNILDRELSQLSGGELQRVAIAAAYLRNGDIYFFDEPSSWLDIRQRFNAAR-LIREL 269
Query: 487 GTVLMVSHE 495
V++V H+
Sbjct: 270 NKVVVVEHD 278
sp|P12622|CHVD_AGRTU ATP-BINDING PROTEIN CHVD >gi|77907|pir||A32349 chvD protein -
Agrobacterium tumefaciens (fragment) >gi|142226 (M21852)
chvD protein [Agrobacterium tumefaciens]
Length = 286
Score = 86.2 bits (210), Expect = 6e-16
Identities = 74/297 (24%), Positives = 133/297 (43%), Gaps = 19/297 (6%)
Query: 103 DTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAEL 162
D Y ++ DE + +LQ+ +D+ + + ++ +VE L P D V L
Sbjct: 2 DRYNELMMNYSDE---TADEGAKLQDMIDSQNLWDLENQVEMAMDALRCPPG-DSAVTGL 57
Query: 163 SGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMD 222
SGG+R + TN+LD E I WL+ +L++Y A ++I+HD F+D
Sbjct: 58 SGGERRRVALCKLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLD 117
Query: 223 EVVNIIYHV-HGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKAN 281
V I + G GI Y Y+ + + ++ Q + E A + I+R++
Sbjct: 118 NVTGWILELDRGRGIP-YEGNYSAYLQAKAKRMQQ-------EAREDASRQKAISREQEW 169
Query: 282 VATSGQAKAREKK--LAKMEIVETISEKPKP---HFDFKFSRKPSRLVFEAKDLVIGYNE 336
+A+S +A+ + K + + + + +E +P + + R+V EA++L Y +
Sbjct: 170 IASSPKARQTKSKARIRRYDELVEAAENRRPGDAQIVIPVAERLGRVVIEAENLTKSYGD 229
Query: 337 -PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYE 392
L + K+ G + IG NG GK+TL + + G G V G + Y +
Sbjct: 230 RVLIENLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDSGSVTVGETVHLGYVD 286
Score = 68.7 bits (165), Expect = 1e-10
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 391 YEQEIKNPSQKTV-----LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQ 445
Y + + N S +T L D+ D W+ E + +A L +S V LSGGE+
Sbjct: 4 YNELMMNYSDETADEGAKLQDMIDSQNLWD-LENQVEMAMDALRCPPGDSAVTGLSGGER 62
Query: 446 AKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSD 505
++ KL+ ++ ++L+LDEPTNHLD + L++ L +YPG V+M++H+ F + +
Sbjct: 63 RRVALCKLLLSQPDLLLLDEPTNHLDAETIAWLEKHLRDYPGAVMMITHDRYFLDNVTGW 122
Query: 506 VINCE 510
++ +
Sbjct: 123 ILELD 127
Score = 61.3 bits (146), Expect = 2e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ +NL+ +GDR + E+++F+L G +G +G NG GK+T +ITG PD G V
Sbjct: 217 VIEAENLTKSYGDRVLIENLTFKLPPGGIVGVIGPNGAGKTTLFRMITGQEQPDSGSVTV 276
Query: 63 SKKHRVGYMD 72
+ +GY+D
Sbjct: 277 GETVHLGYVD 286
gi|397708 (U01165) potential ATP-binding protein [Caulobacter crescentus]
Length = 368
Score = 86.2 bits (210), Expect = 6e-16
Identities = 94/401 (23%), Positives = 160/401 (39%), Gaps = 65/401 (16%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVP-DEGKVI 61
+L +K++ G + +F+ V L E VG NG GKST + I+ G V D G+
Sbjct: 9 VLALKDVRLADGAKPLFDGVDLALEPRERACLVGRNGAGKSTLLKILAGQGVEADSGERA 68
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+V Y+ Q + T E L + Y + E AAL
Sbjct: 69 VQPGAKVVYVSQEPEI-----TGETLLD---------------YATAGGAQDYEAQAAL- 107
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
+DF GL P DK LSGG+ +
Sbjct: 108 -----------ADF--------------GLDP--DKSAKGLSGGETRRAALARAFAEQPD 140
Query: 182 XXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD I L++ L + A +++SHD F++ V + + I R
Sbjct: 141 VLLLDEPTNHLDIFAIQTLEDELAASKCAALIVSHDRAFLNRVTERCFWLEHRKIRRLDK 200
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
G++EFE A ES+ A E +L + R+ A +A Q + + + ++
Sbjct: 201 GFSEFE-------AWAESIMAADAEEARRLDKVLERENAWLARGVQGRRARNEGRRRALL 253
Query: 302 ETISEKPKPHFDFKFSRKPS--------RLVFEAKDLVIGYNE-PLSSEINLKVESGQKI 352
+EK + + + + + V EAK + + + + + ++ G ++
Sbjct: 254 ALRAEKKDRQSELRGTMTMAVESAGTSGKRVVEAKGVTKRFGDRTIVENFSTRILRGDRV 313
Query: 353 AFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
A +G NG GK+TL+K L+G + G V+ G +++Y +Q
Sbjct: 314 ALVGPNGAGKTTLVKLLLGELERDAGTVQLGTNLEVSYIDQ 354
Score = 72.2 bits (174), Expect = 1e-11
Identities = 55/164 (33%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLD-GEVEKGNFQDIAYYEQE 394
+PL ++L +E ++ +G NG GKSTLLK L G D GE + Y QE
Sbjct: 22 KPLFDGVDLALEPRERACLVGRNGAGKSTLLKILAGQGVEADSGERAVQPGAKVVYVSQE 81
Query: 395 IKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
+ + T+LD + E + ALA GL + LSGGE + A+
Sbjct: 82 PEITGE-TLLD--YATAGGAQDYEAQAALADFGLDP---DKSAKGLSGGETRRAALARAF 135
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
+ ++L+LDEPTNHLD+ A + L+ L L+VSH+ F
Sbjct: 136 AEQPDVLLLDEPTNHLDIFAIQTLEDELAASKCAALIVSHDRAF 179
Score = 58.9 bits (140), Expect = 9e-08
Identities = 29/81 (35%), Positives = 44/81 (53%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ K ++ FGDR I E+ S R+L+G+ + VG NG GK+T + ++ G L D G V
Sbjct: 284 VVEAKGVTKRFGDRTIVENFSTRILRGDRVALVGPNGAGKTTLVKLLLGELERDAGTVQL 343
Query: 63 SKKHRVGYMDQHAVLGKGKTT 83
V Y+DQ + K T
Sbjct: 344 GTNLEVSYIDQARMALSDKIT 364
gi|1335913 (U52850) unknown [Erysipelothrix rhusiopathiae]
Length = 246
Score = 85.4 bits (208), Expect = 1e-15
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 23/203 (11%)
Query: 326 EAKDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV---- 380
E +DL + Y+ +P+ + ++K E G+ A +G NG GKST++K++MGL+ + G++
Sbjct: 9 EVEDLTVTYDVKPVLWDCDVKFEKGKLTAIVGPNGAGKSTMIKAIMGLLKPISGKITING 68
Query: 381 --EKGNFQDIAYYEQ--EIKNPSQKTVLDDL---------WDEYPSWNQAELRG-ALARV 426
+K +++IAY Q + TV D + W + P E+ L RV
Sbjct: 69 QHQKDEYKNIAYVPQSGSVDWDFPATVEDIVLMGRYGHIGWIKRPRKEDREIANEMLERV 128
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
G++A + + ++ LSGG+Q ++ A+ + ++ I ILDEP +DV +E L L E
Sbjct: 129 GMSAYR-DRQISQLSGGQQQRVFLARALTQQAEIYILDEPLKGVDVKTEEILMTLLKELA 187
Query: 487 G---TVLMVSHEPEFYEGLVSDV 506
TV++V H+ EG ++
Sbjct: 188 ASGKTVIVVHHDLTSIEGYFDNI 210
ref|NP_013350.1|YEF3| EF-3 (translational elongation factor 3); Yef3p
>gi|2144924|pir||DVBYE3 translation elongation factor
eEF-3 - yeast (Saccharomyces cerevisiae) >gi|662335
(U20865) Yef3p: Elongation factor 3 (EF-3)
[Saccharomyces cerevisiae]
Length = 1044
Score = 84.3 bits (205), Expect = 2e-15
Identities = 128/577 (22%), Positives = 214/577 (36%), Gaps = 130/577 (22%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + RL + G G NG GKST M I G
Sbjct: 437 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------------G 479
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+D G T+E + DI+ +DT + ++ E+ +E
Sbjct: 480 QVD-------GFPTQEECRTVYVE-HDIDGTHSDTSV---------LDFVFESGVGTKEA 522
Query: 130 LDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
+ + LI+ G T ++ ++ LSGG + K
Sbjct: 523 IKDK---LIE---------FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 570
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEF-- 246
TN+LD ++ WL NYL I ISHD F+D V I + GL + +Y + EF
Sbjct: 571 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 630
Query: 247 ----ERVFEE-----------KKAQLESLHNAQVAE-----------------------Q 268
+ +EE + LE + Q A Q
Sbjct: 631 KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQ 690
Query: 269 AKLKDFIARKKANVA---------------TSGQAKARE-------KKLAKMEIVETISE 306
L IA N A TSG+ E K+ A I + +
Sbjct: 691 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 750
Query: 307 KPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIAFIGSNGIGKST- 364
P + ++F R + + I N+ + K+E + ++IA I S K+T
Sbjct: 751 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 810
Query: 365 ------LLKSLMGL-----IPSLDGE---VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDE 410
LL +G+ +P + + + +G + + + + K L +
Sbjct: 811 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL--VESHSKMVAEVDMKEALAS--GQ 866
Query: 411 YPSWNQAELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
+ + E+ + +GL + + SR+ LSGG++ KL A ++++LDEPTN+
Sbjct: 867 FRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 926
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
LD D+ L +AL E+ G V++++H EF + L +V
Sbjct: 927 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEV 963
Score = 71.0 bits (171), Expect = 2e-11
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ L+++ ++ G NG GKSTL++++ +G+V+ Q+ Y E +
Sbjct: 445 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEECRTVYVEHD 498
Query: 395 IKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
I T + D E + ++ L G T + I + LSGG + KL A+ +
Sbjct: 499 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 558
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
++IL+LDEPTNHLD L L T + +SH+ F + + +IN E
Sbjct: 559 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYE 614
Score = 62.1 bits (148), Expect = 1e-08
Identities = 67/281 (23%), Positives = 101/281 (35%), Gaps = 70/281 (24%)
Query: 21 DVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ----HAV 76
D++F+ I +G NG GKST +N++TG L+P G+V + R+ Y+ Q H
Sbjct: 686 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIE 745
Query: 77 LGKGKTTREAL------------------------AEAFQYLFDIEAQIN-----DTYMK 107
KT E + AEA +F IE + K
Sbjct: 746 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 805
Query: 108 MAEMSEDEMNAAL-ENVG---------------------------------ELQEELDNS 133
E E + L EN+G +++E L +
Sbjct: 806 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASG 865
Query: 134 DFYLIDAK-VEETARGLGLTPLL--DKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTN 190
F + K +EE LGL P + + LSGGQ+ K TN
Sbjct: 866 QFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 925
Query: 191 YLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV 231
YLD + + L LK +E I+I+H F + ++ V
Sbjct: 926 YLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAV 966
sp|P16521|EF3A_YEAST ELONGATION FACTOR 3A (EF-3A) (EF-3) >gi|173214 (J05197) elongation
factor 3 [Saccharomyces cerevisiae] >gi|173216 (J05583)
elongation factor 3 [Saccharomyces cerevisiae]
>gi|227236|prf||1617104A elongation factor 3
[Saccharomyces cerevisiae]
Length = 1044
Score = 84.3 bits (205), Expect = 2e-15
Identities = 128/577 (22%), Positives = 214/577 (36%), Gaps = 130/577 (22%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + RL + G G NG GKST M I G
Sbjct: 437 SLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN-----------------G 479
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+D G T+E + DI+ +DT + ++ E+ +E
Sbjct: 480 QVD-------GFPTQEECRTVYVE-HDIDGTHSDTSV---------LDFVFESGVGTKEA 522
Query: 130 LDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
+ + LI+ G T ++ ++ LSGG + K
Sbjct: 523 IKDK---LIE---------FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 570
Query: 189 TNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEF-- 246
TN+LD ++ WL NYL I ISHD F+D V I + GL + +Y + EF
Sbjct: 571 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 630
Query: 247 ----ERVFEE-----------KKAQLESLHNAQVAE-----------------------Q 268
+ +EE + LE + Q A Q
Sbjct: 631 KCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQ 690
Query: 269 AKLKDFIARKKANVA---------------TSGQAKARE-------KKLAKMEIVETISE 306
L IA N A TSG+ E K+ A I + +
Sbjct: 691 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 750
Query: 307 KPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIAFIGSNGIGKST- 364
P + ++F R + + I N+ + K+E + ++IA I S K+T
Sbjct: 751 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTY 810
Query: 365 ------LLKSLMGL-----IPSLDGE---VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDE 410
LL +G+ +P + + + +G + + + + K L +
Sbjct: 811 EYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL--VESHSKMVAEVDMKEALAS--GQ 866
Query: 411 YPSWNQAELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNH 469
+ + E+ + +GL + + SR+ LSGG++ KL A ++++LDEPTN+
Sbjct: 867 FRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 926
Query: 470 LDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
LD D+ L +AL E+ G V++++H EF + L +V
Sbjct: 927 LDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEV 963
Score = 71.0 bits (171), Expect = 2e-11
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ L+++ ++ G NG GKSTL++++ +G+V+ Q+ Y E +
Sbjct: 445 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEECRTVYVEHD 498
Query: 395 IKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
I T + D E + ++ L G T + I + LSGG + KL A+ +
Sbjct: 499 IDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 558
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
++IL+LDEPTNHLD L L T + +SH+ F + + +IN E
Sbjct: 559 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYE 614
Score = 62.1 bits (148), Expect = 1e-08
Identities = 67/281 (23%), Positives = 101/281 (35%), Gaps = 70/281 (24%)
Query: 21 DVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQ----HAV 76
D++F+ I +G NG GKST +N++TG L+P G+V + R+ Y+ Q H
Sbjct: 686 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIE 745
Query: 77 LGKGKTTREAL------------------------AEAFQYLFDIEAQIN-----DTYMK 107
KT E + AEA +F IE + K
Sbjct: 746 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 805
Query: 108 MAEMSEDEMNAAL-ENVG---------------------------------ELQEELDNS 133
E E + L EN+G +++E L +
Sbjct: 806 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASG 865
Query: 134 DFYLIDAK-VEETARGLGLTPLL--DKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTN 190
F + K +EE LGL P + + LSGGQ+ K TN
Sbjct: 866 QFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 925
Query: 191 YLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV 231
YLD + + L LK +E I+I+H F + ++ V
Sbjct: 926 YLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAV 966
pir||S25363 translation elongation factor eEF-3 - yeast (Candida albicans)
>gi|2521|emb|CAA78282| (Z12822) translation elongation
factor 3 [Candida albicans]
Length = 1050
Score = 83.1 bits (202), Expect = 5e-15
Identities = 95/414 (22%), Positives = 143/414 (33%), Gaps = 99/414 (23%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIIT-----GTLVPDEGKVIWSK 64
S +G + + FRL + G G NG GKST M I G DE K ++ +
Sbjct: 440 SLAYGAKILLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIANGQVEGFPTQDECKTVYVE 499
Query: 65 KHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVG 124
DI+ DT + + + E+ + V
Sbjct: 500 H------------------------------DIDGTHADTTVVEFVIEDGEVGLTKDVVV 529
Query: 125 ELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXX 184
+ E + SD +++ + LSGG + K
Sbjct: 530 DKLREFNFSD------------------EMINMPIQSLSGGWKMKLALARAVLKNADILL 571
Query: 185 XXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYA 244
TN+LD ++ WL NYL I++SHD F+D V I H G + +Y +
Sbjct: 572 LDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNVTQYIIHYEGFKLRKYKGNLS 631
Query: 245 EFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETI 304
EF ++ +AQ + D R G K ++K + K+
Sbjct: 632 EF----------VKKCPSAQSYYELGASDLEFRFPEPGFLEG-VKTKQKAIVKVS----- 675
Query: 305 SEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKST 364
+ F++ G ++P +IN + +IA IG NG GKST
Sbjct: 676 ------NMSFQYP---------------GTSKPQIQDINFQCSLSSRIAVIGPNGAGKST 714
Query: 365 LLKSLMGLIPSLDGEVEKGNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSW 414
L+ L G + GEV IAY +Q I N KT EY W
Sbjct: 715 LINVLTGELLPTTGEVYVHENCRIAYIKQHAFAHIDNHLDKTP-----SEYIQW 763
Score = 64.4 bits (154), Expect = 2e-09
Identities = 80/375 (21%), Positives = 143/375 (37%), Gaps = 88/375 (23%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N+S + + +D++F+ I +G NG GKST +N++TG L+P G+
Sbjct: 670 AIVKVSNMSFQYPGTSKPQIQDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTTGE 729
Query: 60 VIWSKKHRVGYMDQHAVL----GKGKTTREALAEAFQYLFDIEA------QIND------ 103
V + R+ Y+ QHA KT E + FQ D E QIN+
Sbjct: 730 VYVHENCRIAYIKQHAFAHIDNHLDKTPSEYIQWRFQTGEDRETMDRASRQINEEDEQNM 789
Query: 104 -----------------TYMKMAEMSEDEMNAAL-ENVGELQE------ELDNSDF---- 135
K E E++ L EN+G E +DN+
Sbjct: 790 NKIFKIEGTPRRIAGIHARRKFKNSYEYEISWMLGENIGMKNERWVPMMSVDNTWLPRGE 849
Query: 136 -------YLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+ + ++E PL K++ E LSGGQ+ K
Sbjct: 850 LMETHAKLVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLDAELVSHSRIRGLSGGQKVK 909
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIY 229
TNYLD + + L LK +E ++I+H F ++ ++
Sbjct: 910 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGIVIITHSAEFTKDLTEEVW 969
Query: 230 HVHGLGITRYSMGYAE-------FERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANV 282
V +T + + E+ +E++ + +++ N A A+KK +
Sbjct: 970 AVLDGRMTPSGHNWVQGQGSGPRIEKKDDEEEDKFDAMGNKIAA---------AKKKKKL 1020
Query: 283 ATSGQAKAREKKLAK 297
+++ K +++++ K
Sbjct: 1021 SSAELRKKKKERMKK 1035
Score = 62.1 bits (148), Expect = 1e-08
Identities = 49/183 (26%), Positives = 85/183 (45%), Gaps = 11/183 (6%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ +++ ++ G NG GKSTL++++ +G+VE QD Y E +
Sbjct: 448 LLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQDECKTVYVEHD 501
Query: 395 IKNPSQKTVLDD--LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAK 452
I T + + + D + + L + + I + LSGG + KL A+
Sbjct: 502 IDGTHADTTVVEFVIEDGEVGLTKDVVVDKLREFNFSDEMINMPIQSLSGGWKMKLALAR 561
Query: 453 LMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEW 512
+ ++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E +
Sbjct: 562 AVLKNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNVTQYIIHYEGF 621
Query: 513 TTR 515
R
Sbjct: 622 KLR 624
Score = 60.1 bits (143), Expect = 4e-08
Identities = 32/90 (35%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 879 EIEEHCAMLGLDAELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
L +AL + G +++++H EF + L +V
Sbjct: 939 ALSKALKAFEGGIVIITHSAEFTKDLTEEV 968
emb|CAB55679.1| (AL117385) putative ABC-transporter ATP-binding protein
[Streptomyces coelicolor A3(2)]
Length = 371
Score = 81.5 bits (198), Expect = 1e-14
Identities = 81/338 (23%), Positives = 145/338 (41%), Gaps = 41/338 (12%)
Query: 194 EEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFE------ 247
++ + WL+ L+ + + ++HD F++ + + I G +TRY GY +
Sbjct: 1 DQAVEWLETQLRAHRGTVLAVTHDRVFLERLTSTILEAEGGRVTRYGDGYNGYRTAKAAE 60
Query: 248 ---RVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAK------- 297
R+ E ++ + E N ++A + +KA++A G R + A
Sbjct: 61 RRRRLQEHEEWRSELARNERLATGHAARLGAIPRKASLANFGHGGFRARGRAHGAMSRIR 120
Query: 298 --MEIVETISEKP--KPHFDFKFSRKPSRLVFEAK---------------DLVIGYNEPL 338
E VE ++E P P F+ + + EA D+ +G L
Sbjct: 121 NARERVERLTENPVAPPPDALAFTVRMATAAEEASATGAASATLPAVQLSDVRVGDRLHL 180
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQEIKN 397
S L + ++ G NG GK+TLLK L G + +G V G + ++E
Sbjct: 181 GS---LGLGRRGRLLVTGPNGAGKTTLLKVLAGELRPDEGSVRVPGRVGHLR--QEETPW 235
Query: 398 PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
P + TV + LA ++ R+ LS G++ ++ A+L++
Sbjct: 236 PPELTVAEAFGLGRVGAADEHADTLLALGLFRPAELRLRMGELSYGQRRRVELARLVSEP 295
Query: 458 SNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
++L+LDEPTNHL EEL+ AL + G +++V+H+
Sbjct: 296 VDLLLLDEPTNHLSPALVEELEEALTGFSGAIVLVTHD 333
dbj|BAA33894.1| (AB018536) elongation factor 3 [Pichia pastoris]
Length = 511
Score = 81.1 bits (197), Expect = 2e-14
Identities = 118/555 (21%), Positives = 203/555 (36%), Gaps = 129/555 (23%)
Query: 24 FRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTT 83
FRL + G G NG GKST M I V G+ Q
Sbjct: 6 FRLKRARRYGLCGPNGAGKSTLMRAIANGQVE-------------GFPSQDEC------- 45
Query: 84 REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVE 143
R E DI+ DT + + E + +L+E F D
Sbjct: 46 RTVYVE-----HDIDGSEADTSTVDFIYGDGSLGTREEIIAKLKE------FSFSDN--- 91
Query: 144 ETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNY 203
++ + LSGG + K TN+LD ++ WL NY
Sbjct: 92 ----------MIAGPIQSLSGGWKMKLALARAVFRNADILLLDEPTNHLDTVNVAWLVNY 141
Query: 204 LKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYS------------------MGYAE 245
L I++SHD F+D+VV I H G + +Y +G +E
Sbjct: 142 LNTCGITSIIVSHDSGFLDKVVQYIIHYEGFKLRKYKGNLSEFVKRVPSAKSYYELGASE 201
Query: 246 FERVFEEKKAQLESLHNAQVA--------------EQAKLKDF-----IARKKANVATSG 286
E F E LE + Q A E+ +++D ++ + A + +G
Sbjct: 202 LEFKFPEP-GFLEGVKTKQKAIVKVSNMTFQYPGTEKPQIRDINFQCSLSSRIAVIGPNG 260
Query: 287 QAKAREKKLAKMEIVETISE--------------------------KPKPHFDFKFSRKP 320
K+ + E++ TI E P + ++F
Sbjct: 261 AGKSTLINVLTGELLPTIGEVYVHENCRIAYIKQHAFAHIDSHLDKTPSEYIQWRFQTGE 320
Query: 321 SRLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIAFIGSNGIGKST-------LLKSLMGL 372
R + I N+ + K++ + ++IA I S K++ LL +G+
Sbjct: 321 DRETMDRASRQINENDEEAMNKIFKIDGTPRRIAEIHSRRKFKNSYEYECSFLLGENIGM 380
Query: 373 -----IPSLDGE---VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALA 424
+P + + + +G + + + + K L ++ + E+ +
Sbjct: 381 KSERWVPMMSVDNAWLPRGEL--VESHSKMVAEVDMKEALAS--GQFRPLTRKEIEEHCS 436
Query: 425 RVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALI 483
+GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+ L +AL
Sbjct: 437 MLGLDAELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALK 496
Query: 484 EYPGTVLMVSHEPEF 498
+ G +++++H EF
Sbjct: 497 AFEGGIIIITHSAEF 511
Score = 67.5 bits (162), Expect = 2e-10
Identities = 50/175 (28%), Positives = 84/175 (47%), Gaps = 10/175 (5%)
Query: 345 KVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIKNPSQK 401
+++ ++ G NG GKSTL++++ +G+VE QD Y E +I
Sbjct: 7 RLKRARRYGLCGPNGAGKSTLMRAIA------NGQVEGFPSQDECRTVYVEHDIDGSEAD 60
Query: 402 T-VLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNI 460
T +D ++ + + E+ L + I + LSGG + KL A+ + ++I
Sbjct: 61 TSTVDFIYGDGSLGTREEIIAKLKEFSFSDNMIAGPIQSLSGGWKMKLALARAVFRNADI 120
Query: 461 LILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
L+LDEPTNHLD L L T ++VSH+ F + +V +I+ E + R
Sbjct: 121 LLLDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDKVVQYIIHYEGFKLR 175
Score = 60.5 bits (144), Expect = 3e-08
Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + ++ D++F+ I +G NG GKST +N++TG L+P G+
Sbjct: 221 AIVKVSNMTFQYPGTEKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTIGE 280
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF-------------------DIEA- 99
V + R+ Y+ QHA + +E Q+ F D EA
Sbjct: 281 VYVHENCRIAYIKQHAFAHIDSHLDKTPSEYIQWRFQTGEDRETMDRASRQINENDEEAM 340
Query: 100 ----QINDTYMKMAEMS---------EDEMNAAL-ENVGELQEE---------------- 129
+I+ T ++AE+ E E + L EN+G E
Sbjct: 341 NKIFKIDGTPRRIAEIHSRRKFKNSYEYECSFLLGENIGMKSERWVPMMSVDNAWLPRGE 400
Query: 130 -LDNSDFYLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+++ + + ++E PL K++ E LSGGQ+ K
Sbjct: 401 LVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDAELVSHSRIRGLSGGQKVK 460
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L LK +E I+I+H F
Sbjct: 461 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGIIIITHSAEF 511
gi|2650646 (AE001106) RNase L inhibitor [Archaeoglobus fulgidus]
Length = 586
Score = 81.1 bits (197), Expect = 2e-14
Identities = 108/482 (22%), Positives = 194/482 (39%), Gaps = 82/482 (17%)
Query: 28 KGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREAL 87
KG +G +G NG GKST + I++G L P+ GK S + +L K +E
Sbjct: 96 KGYVVGILGPNGTGKSTAIKILSGQLKPNLGKEEASWEEIFDRFAGTELLDYLKGIKEGA 155
Query: 88 AEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETAR 147
Q IEA I Y A EL + +D ++DA VE+
Sbjct: 156 IRVSQKPQYIEA-IPKVYSGKAI--------------ELLKRVDERG--MLDAVVEK--- 195
Query: 148 GLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNY 207
LGL + +DV +LSGG+ + T+YLD + + ++
Sbjct: 196 -LGLAEAIKRDVKDLSGGELQRLAIAACILRDADFYFFDEVTSYLDIYQRIAVAGVIREL 254
Query: 208 --ENAFILISHDVPFMDEVVNIIYHVHG----LGITRYSMGYAEFERVFEEKKAQLESLH 261
E +++ HD+ +D + + ++ +G G+ + G
Sbjct: 255 AAEKTVMIVEHDLAILDMLADFVHITYGTPGVFGVVTNAKG------------------- 295
Query: 262 NAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV---ETISEKPKPHF-DFKFS 317
A+V L+ ++A + + R+K + + E+ E++ E + F S
Sbjct: 296 -ARVGINQYLRGYLAEENIRI--------RDKPI-EFEVFQPRESVGENILVEYPSFTKS 345
Query: 318 RKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLD 377
+ RL E ++ G+ + +GSN GKST +K L G+I +
Sbjct: 346 YEGFRLEVEGGEIY----------------QGEVLGVVGSNATGKSTFVKVLAGVIEDDE 389
Query: 378 GEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRV 437
+VE ++Y Q +K V L P + + + + + ++ +
Sbjct: 390 KKVELD--VKVSYKPQYVKADVNMQVGMFLRRINPMIDSSYYKTEFLKPLMLENLMDRYL 447
Query: 438 YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE----LKRALIEYPGTVLMVS 493
LSGGE ++ + E+++ +LDEP+ HLDV+ + E ++R + +VL+V
Sbjct: 448 DDLSGGELQRVAIVACLLREADLYLLDEPSAHLDVEQRTEAARVIRRFALNTGKSVLVVD 507
Query: 494 HE 495
H+
Sbjct: 508 HD 509
Score = 43.8 bits (101), Expect = 0.003
Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 26 LLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTRE 85
+ +GE +G VG+N GKSTF+ ++ G + DE KV K V Y Q+ +
Sbjct: 358 IYQGEVLGVVGSNATGKSTFVKVLAGVIEDDEKKVELDVK--VSYKPQY-------VKAD 408
Query: 86 ALAEAFQYLFDIEAQINDTYMK----MAEMSEDEMNAALENV--GELQEE------LDNS 133
+ +L I I+ +Y K M E+ M+ L+++ GELQ L +
Sbjct: 409 VNMQVGMFLRRINPMIDSSYYKTEFLKPLMLENLMDRYLDDLSGGELQRVAIVACLLREA 468
Query: 134 DFYLID 139
D YL+D
Sbjct: 469 DLYLLD 474
sp|P25997|EF3_CANAL ELONGATION FACTOR 3 (EF-3) >gi|2498|emb|CAA77567| (Z11484)
elongation factor 3 [Candida albicans]
Length = 1049
Score = 81.1 bits (197), Expect = 2e-14
Identities = 94/414 (22%), Positives = 142/414 (33%), Gaps = 99/414 (23%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIIT-----GTLVPDEGKVIWSK 64
S +G + + FRL + G G NG GKST M I G DE K ++ +
Sbjct: 439 SLAYGAKILLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIANGQVEGFPTQDECKTVYVE 498
Query: 65 KHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVG 124
DI+ DT + + + E+ + V
Sbjct: 499 H------------------------------DIDGTHADTTVVEFVIEDGEVGLTKDVVV 528
Query: 125 ELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXX 184
+ E + SD +++ + LSGG + K
Sbjct: 529 DKLREFNFSD------------------EMINMPIQSLSGGWKMKLALARAVLKNADILL 570
Query: 185 XXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYA 244
TN+LD ++ WL NYL I++SHD F+D V I H G + +Y +
Sbjct: 571 LDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNVTQYIIHYEGFKLRKYKGNLS 630
Query: 245 EFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETI 304
EF ++ +AQ + D R G K ++K + K+
Sbjct: 631 EF----------VKKCPSAQSYYELGASDLEFRFPEPGFLEG-VKTKQKAIVKVS----- 674
Query: 305 SEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKST 364
+ F++ G ++P +IN + +IA IG NG GKST
Sbjct: 675 ------NMSFQYP---------------GTSKPQIQDINFQCSLSSRIAVIGPNGAGKST 713
Query: 365 LLKSLMGLIPSLDGEVEKGNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSW 414
L+ L G + GE IAY +Q I N KT EY W
Sbjct: 714 LINVLTGELLPTTGEFYVHENCRIAYIKQHAFAHIDNHLDKTP-----SEYIQW 762
Score = 62.5 bits (149), Expect = 8e-09
Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 88/375 (23%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N+S + + +D++F+ I +G NG GKST +N++TG L+P G+
Sbjct: 669 AIVKVSNMSFQYPGTSKPQIQDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTTGE 728
Query: 60 VIWSKKHRVGYMDQHAVL----GKGKTTREALAEAFQYLFDIEA------QIND------ 103
+ R+ Y+ QHA KT E + FQ D E QIN+
Sbjct: 729 FYVHENCRIAYIKQHAFAHIDNHLDKTPSEYIQWRFQTGEDRETMDRASRQINEEDEQNM 788
Query: 104 -----------------TYMKMAEMSEDEMNAAL-ENVGELQE------ELDNSDF---- 135
K E E++ L EN+G E +DN+
Sbjct: 789 NKIFKIEGTPRRIAGIHARRKFKNSYEYEISWMLGENIGMKNERWVPMMSVDNTWLPRGE 848
Query: 136 -------YLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+ + ++E PL K++ E LSGGQ+ K
Sbjct: 849 LMETHAKLVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLDAELVSHSRIRGLSGGQKVK 908
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIY 229
TNYLD + + L LK +E ++I+H F ++ ++
Sbjct: 909 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGIVIITHSAEFTKDLTEEVW 968
Query: 230 HVHGLGITRYSMGYAE-------FERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANV 282
V +T + + E+ +E++ + +++ N A A+KK +
Sbjct: 969 AVLDGRMTPSGHNWVQGQGSGPRIEKKDDEEEDKFDAMGNKIAA---------AKKKKKL 1019
Query: 283 ATSGQAKAREKKLAK 297
+++ K +++++ K
Sbjct: 1020 SSAELRKKKKERMKK 1034
Score = 62.1 bits (148), Expect = 1e-08
Identities = 49/183 (26%), Positives = 85/183 (45%), Gaps = 11/183 (6%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ +++ ++ G NG GKSTL++++ +G+VE QD Y E +
Sbjct: 447 LLNKTQFRLKRNRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQDECKTVYVEHD 500
Query: 395 IKNPSQKTVLDD--LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAK 452
I T + + + D + + L + + I + LSGG + KL A+
Sbjct: 501 IDGTHADTTVVEFVIEDGEVGLTKDVVVDKLREFNFSDEMINMPIQSLSGGWKMKLALAR 560
Query: 453 LMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEW 512
+ ++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E +
Sbjct: 561 AVLKNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNVTQYIIHYEGF 620
Query: 513 TTR 515
R
Sbjct: 621 KLR 623
Score = 60.1 bits (143), Expect = 4e-08
Identities = 32/90 (35%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 878 EIEEHCAMLGLDAELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLG 937
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
L +AL + G +++++H EF + L +V
Sbjct: 938 ALSKALKAFEGGIVIITHSAEFTKDLTEEV 967
emb|CAA22654| (AL035076) putative elongation factor 3 [Schizosaccharomyces pombe]
Length = 1047
Score = 80.0 bits (194), Expect = 4e-14
Identities = 103/458 (22%), Positives = 170/458 (36%), Gaps = 99/458 (21%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKH-RV 68
S +G + + RL +G G G NG GKST M I G+V H R
Sbjct: 441 SLAYGAKILLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIVN------GQVEGFPTHLRT 494
Query: 69 GYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQE 128
Y++ DI+ DT + + +++ E+ +
Sbjct: 495 VYVEH----------------------DIDESEADT--PSVDFILQDPAVPIKDRDEIVK 530
Query: 129 ELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
L + F L++ + LSGG + K
Sbjct: 531 ALKENSF---------------TDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEP 575
Query: 189 TNYLDEEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFE 247
TN+LD ++ WL+N+L N ++ + I++SHD F+D VV I H + +Y +EF
Sbjct: 576 TNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVVQAIIHYERFKLRKYLGNMSEFV 635
Query: 248 RVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEK 307
+ K+ E L +++ + F+ K +++ + K++
Sbjct: 636 KKVPSAKSYYE-LGASEMEFKFPEPGFLE----------GVKTKQRAIIKVQ-------- 676
Query: 308 PKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLK 367
H F++ G ++P ++I+ +V +IA IG NG GKSTL+K
Sbjct: 677 ---HMSFQYP---------------GTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIK 718
Query: 368 SLMGLIPSLDGEVEKGNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSWNQAELRGAL 423
L G + GE+ + IAY Q + + KT EY W
Sbjct: 719 VLTGELLPTVGEIYQHENCRIAYVAQAAFTHLGHHPDKTP-----SEYIQWR------FQ 767
Query: 424 ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
+ L A SRV + E K + K+ T+ IL
Sbjct: 768 SGEDLEAMDKASRVISEADEEAMKNKIFKIEGTQRKIL 805
Score = 72.2 bits (174), Expect = 1e-11
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE------KGNFQDIAYY 391
L + L+++ G++ G NG GKSTL+++++ +G+VE + + +
Sbjct: 449 LLNRTRLRLKRGRRYGLCGPNGSGKSTLMRAIV------NGQVEGFPTHLRTVYVEHDID 502
Query: 392 EQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFA 451
E E PS +L D P ++ E+ AL T + I + LSGG + KL
Sbjct: 503 ESEADTPSVDFILQD--PAVPIKDRDEIVKALKENSFTDELINMPIGSLSGGWKMKLALT 560
Query: 452 KLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG-TVLMVSHEPEFYEGLVSDVINCE 510
+ M +IL+LDEPTNHLDV L+ L+ + ++VSH+ F + +V +I+ E
Sbjct: 561 RAMFKNPDILLLDEPTNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVVQAIIHYE 620
Query: 511 EWTTR 515
+ R
Sbjct: 621 RFKLR 625
Score = 62.5 bits (149), Expect = 8e-09
Identities = 84/376 (22%), Positives = 141/376 (37%), Gaps = 95/376 (25%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V+++S + + D+SF++ I +G NG GKST + ++TG L+P G+
Sbjct: 671 AIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGE 730
Query: 60 VIWSKKHRVGYMDQHAVLGKG----KTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDE 115
+ + R+ Y+ Q A G KT E + FQ D+EA ++ ++E E+
Sbjct: 731 IYQHENCRIAYVAQAAFTHLGHHPDKTPSEYIQWRFQSGEDLEA-MDKASRVISEADEEA 789
Query: 116 MNAAL--------------------------------ENVGELQEE-----------LDN 132
M + EN+G E L
Sbjct: 790 MKNKIFKIEGTQRKILGIHSRRKLKNSYEYECSFLVGENIGMKSERWVPMMSSDNAWLPR 849
Query: 133 SDFYLIDAK-VEETARGLGL-----TPLLDKDVAE-------------------LSGGQR 167
+ AK V E R L PL+ K++ E LSGGQ+
Sbjct: 850 GELMETHAKMVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRIKGLSGGQK 909
Query: 168 TKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNI 227
K TNYLD + + L LKN+ +L++H F + +
Sbjct: 910 VKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNFGGGVVLVTHSREFTEGLTEE 969
Query: 228 IYHVHGLGIT----RYSMGYAEFERVFE--------------EKKAQLESLHNAQVAEQA 269
++ V+ +T + G R+ E EK + + L A++ +
Sbjct: 970 VWAVNNGHMTPSGHNWVSGQGSGPRIQEKEEGDTFDAFGNKIEKAKKAKKLTGAEL--RK 1027
Query: 270 KLKDFIARKKANVATS 285
K K+ +AR+KA + S
Sbjct: 1028 KKKERMARRKAGLEVS 1043
Score = 62.5 bits (149), Expect = 8e-09
Identities = 34/90 (37%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ + +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 881 EIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLG 940
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
L + L + G V++V+H EF EGL +V
Sbjct: 941 ALSKGLKNFGGGVVLVTHSREFTEGLTEEV 970
dbj|BAA33897.1| (AB018539) elongation factor 3 [Saccharomyces cerevisiae]
Length = 510
Score = 79.6 bits (193), Expect = 6e-14
Identities = 97/419 (23%), Positives = 162/419 (38%), Gaps = 83/419 (19%)
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
++ LSGG + K TN+LD ++ WL NYL I ISHD
Sbjct: 96 ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDS 155
Query: 219 PFMDEVVNIIYHVHGLGITRYSMGYAEF------ERVFEE-----------KKAQLESLH 261
F+D V I + GL + +Y + EF + +EE + LE +
Sbjct: 156 VFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK 215
Query: 262 NAQVAE-----------------------QAKLKDFIARKKANVA--------------- 283
Q A Q L IA N A
Sbjct: 216 TKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 275
Query: 284 TSGQAKARE-------KKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE 336
TSG+ E K+ A I + + P + ++F R + + I N+
Sbjct: 276 TSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINEND 335
Query: 337 PLSSEINLKVE-SGQKIAFIGSNGIGKST-------LLKSLMGL-----IPSLDGE---V 380
+ K+E + ++IA I S K+T LL +G+ +P + + +
Sbjct: 336 AEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWI 395
Query: 381 EKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIE-SRVYV 439
+G + + + + K L ++ + E+ + +GL + + SR+
Sbjct: 396 PRGEL--VESHSKMVAEVDMKEALAS--GQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRG 451
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
LSGG++ KL A ++++LDEPTN+LD D+ L +AL E+ G V++++H EF
Sbjct: 452 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEF 510
Score = 70.2 bits (169), Expect = 4e-11
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 9/174 (5%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIK 396
++ L+++ ++ G NG GKSTL++++ +G+V+ Q+ Y E +I
Sbjct: 2 NKTQLRLKRARRYGICGPNGCGKSTLMRAIA------NGQVDGFPTQEECRTVYVEHDID 55
Query: 397 NPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
T + D E + ++ L G T + I + LSGG + KL A+ +
Sbjct: 56 GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLR 115
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
++IL+LDEPTNHLD L L T + +SH+ F + + +IN E
Sbjct: 116 NADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYE 169
Score = 64.8 bits (155), Expect = 2e-09
Identities = 68/270 (25%), Positives = 103/270 (37%), Gaps = 70/270 (25%)
Query: 21 DVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAV---- 76
D++F+ I +G NG GKST +N++TG L+P G+V + R+ Y+ QHA
Sbjct: 241 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIE 300
Query: 77 ----------------LGKGKTT--------REALAEAFQYLFDIEA------------Q 100
G+ + T E AEA +F IE +
Sbjct: 301 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 360
Query: 101 INDTY-------------MK----MAEMSED----------EMNAALENVGELQEELDNS 133
+TY MK + MS D E ++ + +++E L +
Sbjct: 361 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASG 420
Query: 134 DFYLIDAK-VEETARGLGLTP--LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTN 190
F + K +EE LGL P + + LSGGQ+ K TN
Sbjct: 421 QFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 480
Query: 191 YLDEEHILWLKNYLKNYENAFILISHDVPF 220
YLD + + L LK +E I+I+H F
Sbjct: 481 YLDRDSLGALSKALKEFEGGVIIITHSAEF 510
gi|2622826 (AE000927) RNase L inhibitor [Methanobacterium thermoautotrophicum]
Length = 623
Score = 79.6 bits (193), Expect = 6e-14
Identities = 106/491 (21%), Positives = 192/491 (38%), Gaps = 81/491 (16%)
Query: 29 GEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALA 88
G+ +G +G NG GKST + I++G L P+ G D G +
Sbjct: 130 GDVVGLIGPNGIGKSTIVRILSGELRPNLG-------------DFQDPPGWDEIINHFRG 176
Query: 89 EAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARG 148
Q F ++ + + +M + V +L +D+ + +E
Sbjct: 177 SQLQNYFQRLSKGEISVVHKPQMVDRIPRYVKGKVEDLLTGIDSD-------RTDEVIET 229
Query: 149 LGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYE 208
L + ++ ++++ LSGG+ T++LD L +++
Sbjct: 230 LEIREIMGREISNLSGGELQSVAIAAAALREADFYYFDEPTSWLDVRQRLNAVKVIRSLA 289
Query: 209 NA---FILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQV 265
A ++I HD+ +D + + ++ ++G K + N +
Sbjct: 290 EAGKSVMVIEHDMAALDAMSDYVHILYG-------------------KPGAYGVVSNRRG 330
Query: 266 AEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVF 325
R N G + + K EI +F KP R V
Sbjct: 331 V----------RVGINTYIRGFLREENVRFRKHEI--------------EFKVKPPR-VG 365
Query: 326 EAKDLVIGYNEPLSS--EINLKVESG-----QKIAFIGSNGIGKSTLLKSLMGLIPSLDG 378
EA D++ Y + E L V+ G + I G NGIGK+T K L G+ +G
Sbjct: 366 EAGDILAEYTALSRAYPEFKLDVDEGTIYLNEVITAFGPNGIGKTTFAKILAGVEKPDEG 425
Query: 379 EVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVY 438
+V+K I+Y Q + + TV + L+ PS+ + + R + ++ V
Sbjct: 426 KVKKKI--KISYKPQYLSSDYTGTVEEFLYANAPSYGSNLFKSEIMRPFNLEEILDKPVS 483
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVD----AKEELKRALIEYPGTVLMVSH 494
LSGGE +L A ++ E+++ +LDEPT LDV+ A + ++R + + +++ H
Sbjct: 484 GLSGGELQRLAVAVALSREADLYVLDEPTAFLDVEQRLMAAKAIRRIIEGSNSSAMIIDH 543
Query: 495 EPEFYEGLVSD 505
+ F + VSD
Sbjct: 544 DIIFID-YVSD 553
Score = 48.8 bits (114), Expect = 1e-04
Identities = 45/175 (25%), Positives = 78/175 (43%), Gaps = 25/175 (14%)
Query: 346 VESGQKIAFIGSNGIGKSTLLKSLMG-LIPSLDGEVEKGNFQDIA----------YYEQE 394
V SG + IG NGIGKST+++ L G L P+L + + +I Y+++
Sbjct: 127 VTSGDVVGLIGPNGIGKSTIVRILSGELRPNLGDFQDPPGWDEIINHFRGSQLQNYFQRL 186
Query: 395 IKNPSQKTVLDDLWDEYPSWNQAELRGALARVG----------LTAKQIESR-VYVLSGG 443
K + D P + + ++ L + L ++I R + LSGG
Sbjct: 187 SKGEISVVHKPQMVDRIPRYVKGKVEDLLTGIDSDRTDEVIETLEIREIMGREISNLSGG 246
Query: 444 EQAKLRFAKLMNTESNILILDEPTNHLDVDAK---EELKRALIEYPGTVLMVSHE 495
E + A E++ DEPT+ LDV + ++ R+L E +V+++ H+
Sbjct: 247 ELQSVAIAAAALREADFYYFDEPTSWLDVRQRLNAVKVIRSLAEAGKSVMVIEHD 301
gi|2317850 (U44918) ATP-binding protein [Babesia bovis]
Length = 880
Score = 79.6 bits (193), Expect = 6e-14
Identities = 103/416 (24%), Positives = 171/416 (40%), Gaps = 63/416 (15%)
Query: 150 GLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYEN 209
GL L V ELSGG + + TN LD +L+L + LK
Sbjct: 363 GLRAALPLRVGELSGGFKMRLHLLTQLISKPKLLLLDEPTNNLDVPSVLFLSSTLKRLIE 422
Query: 210 AF----ILISHDVPFMDEVVNIIYHVHGLG-ITRYSMGYAEF----ERVFEEKKAQLESL 260
ILISH+ F++E+ + I+ G G ++ YS G+ +F V K ++L++L
Sbjct: 423 TIGLSVILISHNPQFLNELCSSIFQAPGDGTLSVYSGGFDDFVHKGSNVLGTKTSRLQNL 482
Query: 261 ----------HNAQVAE---QAKLKDFIARKKANVATS---------GQAKAREKKLAKM 298
+NAQ+ K K + +K + T G K+ +
Sbjct: 483 ELTLKKLQQQYNAQLESTKGSQKQKRVLLSQKRRLITETENLVERIRGAKKSSYSDAYEK 542
Query: 299 EIVETISEKPKPHFDFKFSRK-----PSRLVFEAKDLVI--GYNEPLSSEINLKVESGQK 351
++ + P K ++ P + FE ++ + E L S ++L +++G +
Sbjct: 543 LLLSDVQVNPGNLSHLKLVKRGMYVFPDKPAFELDNVAVINKEGEVLLSNVSLTIQNGDR 602
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN--FQDIAYYEQE----------IKNPS 399
I +G+NG GKSTL+ L + + + V+ N +D ++++ E I N
Sbjct: 603 ILLLGNNGAGKSTLISLLNAISRASNIGVDDINSVVEDNSHFQVEGGHWRGRGNGIVNTF 662
Query: 400 QKTVLDDLWDEYPSWNQAELRGALARVGL--TAKQIES---------RVYVLSGGEQAKL 448
+ D L + A G L L +K + S V LS GE+++L
Sbjct: 663 SQNCSDLLNSKLTVGALAMKFGDLDMSALEQLSKYLASFHLIDFMDVNVSDLSFGERSRL 722
Query: 449 RFAKLMNTESNILILDEPTNHLDVDAKEELKRAL--IEYPGTVLMVSHEPEFYEGL 502
A S L LDEPTNHLDV + L L + G +++ +H+ E + L
Sbjct: 723 LLALQFLRNSTFLFLDEPTNHLDVYMQATLSTLLNNVYTKGGIIVATHDMELIKSL 778
Score = 49.2 bits (115), Expect = 8e-05
Identities = 20/48 (41%), Positives = 37/48 (76%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNII 49
+IL+VK+L+ GDR +F++++FR+ +G+ IG VG NG GK++ ++ +
Sbjct: 123 TILDVKDLTIWIGDRVLFDNIAFRINRGDCIGIVGNNGTGKTSLLDAL 170
Score = 48.4 bits (113), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA----KEELKRALIEYPGTVLM 491
RV LSGG + +L + ++ +L+LDEPTN+LDV + LKR + +V++
Sbjct: 371 RVGELSGGFKMRLHLLTQLISKPKLLLLDEPTNNLDVPSVLFLSSTLKRLIETIGLSVIL 430
Query: 492 VSHEPEFYEGLVSDV 506
+SH P+F L S +
Sbjct: 431 ISHNPQFLNELCSSI 445
gi|2317847 (U44917) ATP-binding protein [Babesia bovis]
Length = 880
Score = 79.6 bits (193), Expect = 6e-14
Identities = 103/416 (24%), Positives = 171/416 (40%), Gaps = 63/416 (15%)
Query: 150 GLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYEN 209
GL L V ELSGG + + TN LD +L+L + LK
Sbjct: 363 GLRAALPLRVGELSGGFKMRLHLLTQLISKPKLLLLDEPTNNLDVPSVLFLSSTLKRLIE 422
Query: 210 AF----ILISHDVPFMDEVVNIIYHVHGLG-ITRYSMGYAEF----ERVFEEKKAQLESL 260
ILISH+ F++E+ + I+ G G ++ YS G+ +F V K ++L++L
Sbjct: 423 TIGLSVILISHNPQFLNELCSSIFQAPGDGTLSVYSGGFDDFVHKGSNVLGTKTSRLQNL 482
Query: 261 ----------HNAQVAE---QAKLKDFIARKKANVATS---------GQAKAREKKLAKM 298
+NAQ+ K K + +K + T G K+ +
Sbjct: 483 ELTLKKLQQQYNAQLESTKGSQKQKRVLLSQKRRLITETENLVERIRGAKKSSYSDAYEK 542
Query: 299 EIVETISEKPKPHFDFKFSRK-----PSRLVFEAKDLVI--GYNEPLSSEINLKVESGQK 351
++ + P K ++ P + FE ++ + E L S ++L +++G +
Sbjct: 543 LLLSDVQVNPGNLSHLKLVKRGMYVFPDKPAFELDNVAVINKEGEVLLSNVSLTIQNGDR 602
Query: 352 IAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN--FQDIAYYEQE----------IKNPS 399
I +G+NG GKSTL+ L + + + V+ N +D ++++ E I N
Sbjct: 603 ILLLGNNGAGKSTLISLLNAISRASNIGVDDINSVVEDNSHFQVEGGHWRGRGNGIVNTF 662
Query: 400 QKTVLDDLWDEYPSWNQAELRGALARVGL--TAKQIES---------RVYVLSGGEQAKL 448
+ D L + A G L L +K + S V LS GE+++L
Sbjct: 663 SQNCSDLLNSKLTVGALAMKFGDLDMSALEQLSKYLASFHLIDFMDVNVSDLSFGERSRL 722
Query: 449 RFAKLMNTESNILILDEPTNHLDVDAKEELKRAL--IEYPGTVLMVSHEPEFYEGL 502
A S L LDEPTNHLDV + L L + G +++ +H+ E + L
Sbjct: 723 LLALQFLRNSTFLFLDEPTNHLDVYMQATLSTLLNNVYTKGGIIVATHDMELIKSL 778
Score = 49.2 bits (115), Expect = 8e-05
Identities = 20/48 (41%), Positives = 37/48 (76%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNII 49
+IL+VK+L+ GDR +F++++FR+ +G+ IG VG NG GK++ ++ +
Sbjct: 123 TILDVKDLTIWIGDRVLFDNIAFRINRGDCIGIVGNNGTGKTSLLDAL 170
Score = 48.4 bits (113), Expect = 1e-04
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA----KEELKRALIEYPGTVLM 491
RV LSGG + +L + ++ +L+LDEPTN+LDV + LKR + +V++
Sbjct: 371 RVGELSGGFKMRLHLLTQLISKPKLLLLDEPTNNLDVPSVLFLSSTLKRLIETIGLSVIL 430
Query: 492 VSHEPEFYEGLVSDV 506
+SH P+F L S +
Sbjct: 431 ISHNPQFLNELCSSI 445
gi|2707897 (AF038153) elongation-like factor [Candida albicans]
Length = 1191
Score = 79.2 bits (192), Expect = 7e-14
Identities = 91/388 (23%), Positives = 150/388 (38%), Gaps = 84/388 (21%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHR 67
+ S +G R + RLLKG G G NG GKST M I+ +G++
Sbjct: 570 DFSLAYGTRMLLNKTKLRLLKGHRYGLCGRNGAGKSTLMRAIS------KGQL------- 616
Query: 68 VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQ 127
+G T + L F +E ++ + M +S + L NVG
Sbjct: 617 -----------EGFPTADELKTCF-----VEHKLQGSEADMDLVSFIGSDPELANVGR-- 658
Query: 128 EELDNSDFYLIDAKVEETARGLGL-TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXX 186
++E+ + +G L + V LSGG + K
Sbjct: 659 ------------EEIEQALKDVGFPDERLQQQVGSLSGGWKMKLELARAMLMKADVLLLD 706
Query: 187 XXTNYLDEEHILWLKNYL-KNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAE 245
TN+LD ++ WL++YL +N E+ ++ SHD F+D V I H + Y +E
Sbjct: 707 EPTNHLDVANVKWLQDYLVENTES--LICSHDSGFLDAVCTDIIHYENKKLAYYKGNLSE 764
Query: 246 FERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETIS 305
F ++ E K+ +L ++ V +A + T K+ + +A+M V
Sbjct: 765 FVKIKPEGKSYY-TLTDSNVK--------MAFPPPGILTG--VKSNTRAVARMSNV---- 809
Query: 306 EKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTL 365
F + G ++P ++ + ++A +G NG GKSTL
Sbjct: 810 -------TFAYP---------------GADKPSLKNVSCSLSLSSRVAILGPNGAGKSTL 847
Query: 366 LKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
+K L + +G+VEK I Y Q
Sbjct: 848 IKLLTAELVPQEGKVEKHPNLRIGYIAQ 875
Score = 73.0 bits (176), Expect = 6e-12
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 13/179 (7%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ L++ G + G NG GKSTL++++ G++E D + E +
Sbjct: 580 LLNKTKLRLLKGHRYGLCGRNGAGKSTLMRAIS------KGQLEGFPTADELKTCFVEHK 633
Query: 395 IKNPSQKTVLDDLWDEYPSW---NQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFA 451
++ L P + E+ AL VG ++++ +V LSGG + KL A
Sbjct: 634 LQGSEADMDLVSFIGSDPELANVGREEIEQALKDVGFPDERLQQQVGSLSGGWKMKLELA 693
Query: 452 KLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ M ++++L+LDEPTNHLDV + L+ L+E + L+ SH+ F + + +D+I+ E
Sbjct: 694 RAMLMKADVLLLDEPTNHLDVANVKWLQDYLVENTES-LICSHDSGFLDAVCTDIIHYE 751
Score = 62.5 bits (149), Expect = 8e-09
Identities = 83/386 (21%), Positives = 147/386 (37%), Gaps = 81/386 (20%)
Query: 2 SILNVKNLSHGF--GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
++ + N++ + D+ ++VS L + +G NG GKST + ++T LVP EGK
Sbjct: 802 AVARMSNVTFAYPGADKPSLKNVSCSLSLSSRVAILGPNGAGKSTLIKLLTAELVPQEGK 861
Query: 60 VIWSKKHRVGYMDQHAV----LGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDE 115
V R+GY+ QHA+ K KT + +++ D E + ++ + E E
Sbjct: 862 VEKHPNLRIGYIAQHALQHVEQHKEKTCQSIFTWRYRFGDDREVLLKES--RKVSDEEQE 919
Query: 116 MNAALENVGE-----------LQEELDNSDFYLIDAKV---------------------- 142
M ++G+ +++L S Y + K
Sbjct: 920 MMKKEIDIGDGRGKRAIEALVGRQKLKKSFQYEVKWKYWLPKYNSWVPKEVLLEHGFDKL 979
Query: 143 -------EETARGLG---LTPL----------LDKDVAELS------GGQRTKXXXXXXX 176
E + GLG LTP LD D+A+ + GGQ K
Sbjct: 980 IQKFDDHEASREGLGYRELTPSVIRKHFEDVGLDGDIADHTPMDHYLGGQLVKVVIAGAM 1039
Query: 177 XXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGI 236
TNYLD + + L ++ + ++ISH+ F+ + +HV +
Sbjct: 1040 WNNPHLLVLDEPTNYLDRDSLGGLAMAIREWNGGVVMISHNNEFVGALCPEQWHVENGEV 1099
Query: 237 TR---YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFI---------ARKKANVAT 284
+ S+ + + K L+ +H+ Q Q K + + RKK
Sbjct: 1100 IQKGTLSLMLKDLKIKVVTKHLLLKKVHSCQ--NQLKRESMMMILSLILSRTRKKKMTRN 1157
Query: 285 SGQAKAREKKLAKMEIVETISEKPKP 310
+A+A ++L +E + + PKP
Sbjct: 1158 EKKAQAERRRLRYIEWLSSPKGTPKP 1183
Score = 50.4 bits (118), Expect = 4e-05
Identities = 26/61 (42%), Positives = 37/61 (60%)
Query: 442 GGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEG 501
GG+ K+ A M ++L+LDEPTN+LD D+ L A+ E+ G V+M+SH EF
Sbjct: 1027 GGQLVKVVIAGAMWNNPHLLVLDEPTNYLDRDSLGGLAMAIREWNGGVVMISHNNEFVGA 1086
Query: 502 L 502
L
Sbjct: 1087 L 1087
sp|P29551|EF3_PNECA ELONGATION FACTOR 3 (EF-3) >gi|477560|pir||A49204 translation
elongation factor EF-3 - Pneumocystis carinii
>gi|169412|gb|AAA33789.1| (M87665) elongation factor 3
[Pneumocystis carinii]
Length = 1042
Score = 78.4 bits (190), Expect = 1e-13
Identities = 57/180 (31%), Positives = 90/180 (49%), Gaps = 11/180 (6%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLM-GLIPSLDGEVEKGNFQDIAYYEQEIK 396
L + +L ++ G + G NG GKSTLL+S+ G + E++ AY E +I
Sbjct: 444 LLNRTSLNLKRGYRYGLCGPNGSGKSTLLRSIFNGQLEGFPTELKT------AYVEHDID 497
Query: 397 NPSQKTVLDDLWDEYPSW---NQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
+ KT + D PS N+ E+ +L T + + LSGG + KL +
Sbjct: 498 DTESKTSVFDFIANDPSVVVKNKQEVISSLLEHSFTEDMLSIPISNLSGGWKMKLALVRA 557
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALIEYPG-TVLMVSHEPEFYEGLVSDVINCEEW 512
M + +IL+LDEPTNHLDV L+ L T ++VSH+ +F + +V +I+ E +
Sbjct: 558 MLRQVDILLLDEPTNHLDVKNVAWLENFLTSQTHITSIIVSHDSKFLDNVVQAIIHYEHF 617
Score = 72.6 bits (175), Expect = 7e-12
Identities = 84/390 (21%), Positives = 145/390 (36%), Gaps = 92/390 (23%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFM-NIITGTL--VPDEGKVIWSKKH 66
S +G + + S L +G G G NG GKST + +I G L P E K +
Sbjct: 436 SLAYGAKILLNRTSLNLKRGYRYGLCGPNGSGKSTLLRSIFNGQLEGFPTELKTAY---- 491
Query: 67 RVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMA--EMSEDEMNAALENVG 124
+E I+DT K + + ++ + ++N
Sbjct: 492 ------------------------------VEHDIDDTESKTSVFDFIANDPSVVVKNKQ 521
Query: 125 ELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXX 184
E+ L F +L ++ LSGG + K
Sbjct: 522 EVISSLLEHSF---------------TEDMLSIPISNLSGGWKMKLALVRAMLRQVDILL 566
Query: 185 XXXXTNYLDEEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGY 243
TN+LD +++ WL+N+L + + I++SHD F+D VV I H + +Y
Sbjct: 567 LDEPTNHLDVKNVAWLENFLTSQTHITSIIVSHDSKFLDNVVQAIIHYEHFKLKKYMGNM 626
Query: 244 AEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVET 303
++F + ++ + + +++ ++ K +++ + +M +E
Sbjct: 627 SKFITLVPSARS-YQDISMSEIEFSFPEPGYLE----------GVKTKQRAICRMRDIE- 674
Query: 304 ISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKS 363
F ++ G +EP ++L+V +IA IG NG GKS
Sbjct: 675 --------FQYE-----------------GTSEPQIKNVSLQVSLSSRIAVIGPNGAGKS 709
Query: 364 TLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
TL+K L G + GEV IAY Q
Sbjct: 710 TLIKVLCGELIPQKGEVWCHPNLRIAYVAQ 739
Score = 64.4 bits (154), Expect = 2e-09
Identities = 72/350 (20%), Positives = 132/350 (37%), Gaps = 85/350 (24%)
Query: 20 EDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGK 79
++VS ++ I +G NG GKST + ++ G L+P +G+V R+ Y+ Q A +
Sbjct: 686 KNVSLQVSLSSRIAVIGPNGAGKSTLIKVLCGELIPQKGEVWCHPNLRIAYVAQAAFVHL 745
Query: 80 GKTTREALAEAFQYLF---DIEAQINDTYMKMAEMSEDEMNAAL---------------- 120
G + +E Q+ + + I+ ++ E E MN
Sbjct: 746 GSHENKTPSEYIQWRYRTAEDSETIDRASRQLTENDEHLMNKIFKINGTSRKIQGIHSRR 805
Query: 121 ---------------ENVGELQEE-----------------LDNSDFYLIDAKVEETARG 148
ENVGE E +++ + + ++E +
Sbjct: 806 KLKNSYEYECSFLVGENVGEKNERWVPLPSMNNEWLPRGELIESHSKMVAEVDMKEALKS 865
Query: 149 LGLTPLLDKDVAE-------------------LSGGQRTKXXXXXXXXXXXXXXXXXXXT 189
PL+ K++ + LSGGQ+ K T
Sbjct: 866 GSFRPLVRKEIEKHCESFGLDAEIVTHSRIKGLSGGQKVKLVLAAGSWLKPHVIVLDEPT 925
Query: 190 NYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGIT----RYSMGYAE 245
NYLD + + L LK++E ++I+H V F + ++ V +T + G
Sbjct: 926 NYLDRDSLGALSKALKSFEGGVVIITHSVEFTKNLTEEVWSVQNGQMTPSGHNWVQGQGT 985
Query: 246 FERVFE-EKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKK 294
R+ E E++ ++L N K++ A+KKA TS + + ++K+
Sbjct: 986 GPRLQEQEEEDTFDALGN-------KIE---AKKKAKKLTSSELRKKKKE 1025
Score = 57.8 bits (137), Expect = 2e-07
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 427 GLTAKQI-ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY 485
GL A+ + SR+ LSGG++ KL A + ++++LDEPTN+LD D+ L +AL +
Sbjct: 884 GLDAEIVTHSRIKGLSGGQKVKLVLAAGSWLKPHVIVLDEPTNYLDRDSLGALSKALKSF 943
Query: 486 PGTVLMVSHEPEFYEGLVSDV 506
G V++++H EF + L +V
Sbjct: 944 EGGVVIITHSVEFTKNLTEEV 964
dbj|BAA33895.1| (AB018537) elongation factor 3 [Yarrowia lipolytica]
Length = 513
Score = 78.0 bits (189), Expect = 2e-13
Identities = 122/552 (22%), Positives = 195/552 (35%), Gaps = 123/552 (22%)
Query: 25 RLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTR 84
RL +G G G NG GKST M I V +G T+
Sbjct: 7 RLKRGRRYGLCGPNGAGKSTLMRAIANGQV------------------------EGFPTQ 42
Query: 85 EALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQE-ELDNSDFYLIDAKVE 143
E F ++ I+ T+ + + A E++G +E DF D
Sbjct: 43 EECRTVF-----VDHDIDGTHAD-TNVVDYVRKTAGESIGTEEEVRTQLLDFLFTDEMTR 96
Query: 144 ETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNY 203
+ LSGG + K TN+LD ++ WL NY
Sbjct: 97 -------------MPITSLSGGWKMKLALATAVLRKADILLLDEPTNHLDTVNVAWLVNY 143
Query: 204 LKNYENAFILISHDVPFMDEVVNIIYHVHGLGITR------------------YSMGYAE 245
L I++SHD F+D V I H + + Y +G +E
Sbjct: 144 LNTCGITSIIVSHDSGFLDNVCEYIIHYERFKLRKYKGNLSEFVKKVPSAKSYYELGASE 203
Query: 246 FERVFEE---------KKAQLESLHNA-------------QVAEQAKLKDFIARKKANVA 283
F E K+ + + N V+ Q L IA N A
Sbjct: 204 INFSFPEPGFLEGVKTKQKAIVKVQNMTFQYPGTTKPQIRNVSFQCSLSSRIAVIGPNGA 263
Query: 284 ---------------TSGQAKARE-------KKLAKMEIVETISEKPKPHFDFKFSRKPS 321
TSG+ A E K+ A I + P + ++F
Sbjct: 264 GKSTLINVLTGELLPTSGEVYAHENCRIAYIKQHAFAHIDSHLDSTPSEYIQWRFQTGED 323
Query: 322 RLVFEAKDLVIGYNEPLSSEINLKVE-SGQKIA-------FIGSNGIGKSTLLKSLMGL- 372
R + + I ++ + K+E + +++A F S S LL +G+
Sbjct: 324 RETMDRANRQITDSDEAAMNKIYKIEGTPRRVAEVHARRKFKNSYEYECSFLLGENLGMK 383
Query: 373 ----IPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWD-EYPSWNQAELRGALARVG 427
IP G V+ E K ++ + + L ++ + E+ A +G
Sbjct: 384 SEKWIPM--GSVDNAWIPRSELMESHSKQVAEVDMKEALASGQFRPLTKKEIEQHCALLG 441
Query: 428 LTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
L + + SR+ LSGG++ KL A ++++LDEPTN+LD D+ L RA+ +
Sbjct: 442 LEPELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLGALSRAIKRFE 501
Query: 487 GTVLMVSHEPEF 498
G V++++H EF
Sbjct: 502 GGVVIITHSAEF 513
Score = 60.5 bits (144), Expect = 3e-08
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIKNPSQ 400
L+++ G++ G NG GKSTL++++ +G+VE Q+ + + +I
Sbjct: 6 LRLKRGRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQEECRTVFVDHDIDGTHA 59
Query: 401 KTVLDDLWDEYPSWN---QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
T + D + + + E+R L T + + LSGG + KL A + +
Sbjct: 60 DTNVVDYVRKTAGESIGTEEEVRTQLLDFLFTDEMTRMPITSLSGGWKMKLALATAVLRK 119
Query: 458 SNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTTR 515
++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E + R
Sbjct: 120 ADILLLDEPTNHLDTVNVAWLVNYLNTCGITSIIVSHDSGFLDNVCEYIIHYERFKLR 177
Score = 58.6 bits (139), Expect = 1e-07
Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFGD--RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V+N++ + + +VSF+ I +G NG GKST +N++TG L+P G+
Sbjct: 223 AIVKVQNMTFQYPGTTKPQIRNVSFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 282
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDI------------------EAQI 101
V + R+ Y+ QHA +E Q+ F EA +
Sbjct: 283 VYAHENCRIAYIKQHAFAHIDSHLDSTPSEYIQWRFQTGEDRETMDRANRQITDSDEAAM 342
Query: 102 NDTY---------------MKMAEMSEDEMNAAL-ENVGELQEE---------------- 129
N Y K E E + L EN+G E+
Sbjct: 343 NKIYKIEGTPRRVAEVHARRKFKNSYEYECSFLLGENLGMKSEKWIPMGSVDNAWIPRSE 402
Query: 130 -LDNSDFYLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+++ + + ++E PL K++ + LSGGQ+ K
Sbjct: 403 LMESHSKQVAEVDMKEALASGQFRPLTKKEIEQHCALLGLEPELVSHSRIRGLSGGQKVK 462
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L +K +E ++I+H F
Sbjct: 463 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSRAIKRFEGGVVIITHSAEF 513
dbj|BAA33893.1| (AB018535) elongation factor 3 [Kluyveromyces lactis]
Length = 510
Score = 78.0 bits (189), Expect = 2e-13
Identities = 91/420 (21%), Positives = 166/420 (38%), Gaps = 85/420 (20%)
Query: 159 VAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
+A LSGG + K TN+LD ++ WL YL I++SHD
Sbjct: 96 IASLSGGWKMKLALARAVLKNADILLLDEPTNHLDTVNVNWLVEYLNTCGITSIIVSHDS 155
Query: 219 PFMDEVVNIIYHVHGLGITR------------------YSMGYAEFERVFEEKKAQLESL 260
F+D+V I H GL + + Y +G +E E F E LE +
Sbjct: 156 GFLDKVCQYIIHYEGLKLRKYKGNLSEFVKKCPTAKSYYELGASELEFRFPEP-GYLEGV 214
Query: 261 HNAQVA--------------EQAKLKDF-----IARKKANVATSGQAKAREKKLAKMEIV 301
Q A + ++ D ++ + A + +G K+ + E++
Sbjct: 215 KTKQKAIVKVSNMTFQYPGTAKPQISDISFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 274
Query: 302 ETISE--------------------------KPKPHFDFKFSRKPSRLVFEAKDLVIGYN 335
T+ E P + ++F R + + VI +
Sbjct: 275 PTVGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRVINED 334
Query: 336 EPLSSEINLKVE-SGQKIAFIGSNGIGKST-------LLKSLMGL-----IPSLDGE--- 379
+ + K++ + ++IA I + K+T LL +G+ +P + +
Sbjct: 335 DAEAMNKIFKIDGTPRRIAGIHARRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 394
Query: 380 VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIE-SRVY 438
+ +G + + + + K L ++ + E+ A +GL A+ + SR+
Sbjct: 395 LPRGEL--VESHSKMVAEVDMKEALAS--GQFRPLTRKEIEEHCAMLGLDAELVSHSRIR 450
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEF 498
LSGG++ KL A ++++LDEPTN+LD D+ L +AL + G V++++H EF
Sbjct: 451 GLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGVIIITHSAEF 510
Score = 62.8 bits (150), Expect = 6e-09
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 9/174 (5%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIK 396
++ L+++ ++ G NG GKSTL++++ +G+V+ Q+ Y E +I
Sbjct: 2 NKTQLRLKRARRYGLCGPNGAGKSTLMRAIA------NGQVDGFPTQEECRTVYVEHDID 55
Query: 397 NPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNT 456
T + D + + L G + + I + LSGG + KL A+ +
Sbjct: 56 GTQADTSVVDFVFSGNVGTKDVITDKLREFGFSDEMIAMPIASLSGGWKMKLALARAVLK 115
Query: 457 ESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E
Sbjct: 116 NADILLLDEPTNHLDTVNVNWLVEYLNTCGITSIIVSHDSGFLDKVCQYIIHYE 169
Score = 60.1 bits (143), Expect = 4e-08
Identities = 67/291 (23%), Positives = 104/291 (35%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFGDRAI--FEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + A D+SF+ I +G NG GKST +N++TG L+P G+
Sbjct: 220 AIVKVSNMTFQYPGTAKPQISDISFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTVGE 279
Query: 60 VIWSKKHRVGYMDQHAV--------------------LGKGKTT--------REALAEAF 91
V + R+ Y+ QHA G+ + T E AEA
Sbjct: 280 VYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRVINEDDAEAM 339
Query: 92 QYLFDIEAQIN-----DTYMKMAEMSEDEMNAAL-ENVGELQEE---------------- 129
+F I+ K E E + L EN+G E
Sbjct: 340 NKIFKIDGTPRRIAGIHARRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWLPRGE 399
Query: 130 -LDNSDFYLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+++ + + ++E PL K++ E LSGGQ+ K
Sbjct: 400 LVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLDAELVSHSRIRGLSGGQKVK 459
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L LK +E I+I+H F
Sbjct: 460 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGVIIITHSAEF 510
dbj|BAA33890.1| (AB018532) elongation factor 3 [Candida maltosa]
Length = 512
Score = 78.0 bits (189), Expect = 2e-13
Identities = 95/395 (24%), Positives = 134/395 (33%), Gaps = 89/395 (22%)
Query: 24 FRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTT 83
FRL + G G NG GKST M I V +G T
Sbjct: 6 FRLKRNRRYGLCGPNGAGKSTLMRAIANGQV------------------------EGFPT 41
Query: 84 REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVE 143
+E + DI+ DT + + + E+ E V E SD
Sbjct: 42 QEECKTVYVE-HDIDGTHADTTVVEFVIEDGEVGLTKETVINKLTEFGFSD--------- 91
Query: 144 ETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNY 203
++ + LSGG + K TN+LD ++ WL NY
Sbjct: 92 ---------EMIAMPIQSLSGGWKMKLALARAVLKNADILLLDEPTNHLDTVNVAWLVNY 142
Query: 204 LKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNA 263
L I++SHD F+D V I H G + +Y +EF ++ +A
Sbjct: 143 LTTCGITSIIVSHDSGFLDNVTQYIIHYEGFKLRKYKGNLSEF----------VKKCPSA 192
Query: 264 QVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRL 323
Q + D R G K ++K + K+ S +
Sbjct: 193 QSYYELGASDLEFRFPEPGFLEG-VKTKQKAIVKV----------------------SNM 229
Query: 324 VFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKG 383
F+ G +P +IN + +IA IG NG GKSTL+ L G + GEV
Sbjct: 230 TFQYP----GTTKPQIQDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTAGEVYVH 285
Query: 384 NFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSW 414
IAY +Q I N KT EY W
Sbjct: 286 ENCRIAYIKQHAFAHIDNHLDKTP-----SEYIQW 315
Score = 64.0 bits (153), Expect = 3e-09
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIK 396
++ +++ ++ G NG GKSTL++++ +G+VE Q+ Y E +I
Sbjct: 2 NKTQFRLKRNRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQEECKTVYVEHDID 55
Query: 397 NPSQKTVLDD--LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
T + + + D + + L G + + I + LSGG + KL A+ +
Sbjct: 56 GTHADTTVVEFVIEDGEVGLTKETVINKLTEFGFSDEMIAMPIQSLSGGWKMKLALARAV 115
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTT 514
++IL+LDEPTNHLD L L T ++VSH+ F + + +I+ E +
Sbjct: 116 LKNADILLLDEPTNHLDTVNVAWLVNYLTTCGITSIIVSHDSGFLDNVTQYIIHYEGFKL 175
Query: 515 R 515
R
Sbjct: 176 R 176
Score = 58.9 bits (140), Expect = 9e-08
Identities = 68/291 (23%), Positives = 107/291 (36%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFGD--RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + + +D++F+ I +G NG GKST +N++TG L+P G+
Sbjct: 222 AIVKVSNMTFQYPGTTKPQIQDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTAGE 281
Query: 60 VIWSKKHRVGYMDQHAVL----GKGKTTREALAEAFQYLFDIEA------QIND------ 103
V + R+ Y+ QHA KT E + FQ D E QIN+
Sbjct: 282 VYVHENCRIAYIKQHAFAHIDNHLDKTPSEYIQWRFQTGEDRETMDRASRQINEEDEQNM 341
Query: 104 -----------------TYMKMAEMSEDEMNAAL-ENVGELQE------ELDNSDF---- 135
K E E++ L EN+G E +DN+
Sbjct: 342 NKIFKVEGTPRRVAGIHARRKFKNSYEYEISWLLGENIGMKNERWVPMMSVDNTWLPRGE 401
Query: 136 -------YLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
+ + ++E PL K++ E LSGGQ+ K
Sbjct: 402 LMETHAKLVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLDAELVSHSRIRGLSGGQKVK 461
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L LK +E ++I+H F
Sbjct: 462 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKALKAFEGGIVIITHSAEF 512
Score = 57.0 bits (135), Expect = 4e-07
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 431 EIEEHCAMLGLDAELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLG 490
Query: 477 ELKRALIEYPGTVLMVSHEPEF 498
L +AL + G +++++H EF
Sbjct: 491 ALSKALKAFEGGIVIITHSAEF 512
emb|CAB16738.1| (Z99568) putative translation elongation factor
[Schizosaccharomyces pombe]
Length = 1057
Score = 78.0 bits (189), Expect = 2e-13
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 33/211 (15%)
Query: 321 SRLVFEAKDLV-----IGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP 374
S L E ++LV + Y L S NL + G + +G NG GKSTLL+++
Sbjct: 436 SNLTIEEEELVNTDFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAI----- 490
Query: 375 SLDGEVEKGNFQDIAYYEQEIKN----------PSQKTVLDDLWDEYP----SWNQAELR 420
G+ + NF E+K + +LD + + + + E
Sbjct: 491 ---GDYKVENFPS----PDEVKTCFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAA 543
Query: 421 GALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR 480
AL VG TA+ E+ V LSGG + KL A+ M +++IL+LDEPTNHLDV L+
Sbjct: 544 DALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHLDVANIAWLEA 603
Query: 481 ALIEYPG-TVLMVSHEPEFYEGLVSDVINCE 510
L T L+VSH+ F + + +D+I+ E
Sbjct: 604 YLTSQKNITCLIVSHDSSFLDHVCTDIIHYE 634
Score = 71.4 bits (172), Expect = 2e-11
Identities = 87/395 (22%), Positives = 138/395 (34%), Gaps = 89/395 (22%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLV-----PDEGKVIW 62
+ S +G R + + L +G G VG NG GKST + I V PDE K +
Sbjct: 449 DFSLAYGGRLLLSHTNLHLYRGHRYGVVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCF 508
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
H++ G+ + + D AQ D + ++ E AL +
Sbjct: 509 VA---------HSLQGE---------DTSMAILDFVAQ--DKALLTMNVTRQEAADALHS 548
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
VG E +N VA LSGG + K
Sbjct: 549 VGFTAEMQENP-------------------------VASLSGGWKMKLELARAMLQKADI 583
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNIIYHVHGLGITRYSM 241
TN+LD +I WL+ YL + +N +++SHD F+D V I H G+ +
Sbjct: 584 LLLDEPTNHLDVANIAWLEAYLTSQKNITCLIVSHDSSFLDHVCTDIIHYEGVKNQAKKL 643
Query: 242 GYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIV 301
GY + N++ + K K +
Sbjct: 644 GYYQ----------------------------------GNLSAFVKVKPEAKSYYTLTAT 669
Query: 302 ETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGY---NEPLSSEINLKVESGQKIAFIGSN 358
P P R +RL+ + + Y + + + + ++A +G N
Sbjct: 670 NEKFVFPPPGI-LTGVRSNTRLILKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPN 728
Query: 359 GIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
G GKSTL+K L+G + +G+V K + Y Q
Sbjct: 729 GAGKSTLIKVLIGEVIPQEGKVFKHPNLRVGYVAQ 763
Score = 67.5 bits (162), Expect = 2e-10
Identities = 80/375 (21%), Positives = 152/375 (40%), Gaps = 78/375 (20%)
Query: 3 ILNVKNLSHGFGD--RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
IL + N S+ + + + ++V+ L + +G NG GKST + ++ G ++P EGKV
Sbjct: 691 ILKMTNASYTYPNAKKKSLDNVTVGLSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGKV 750
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF----DIEAQINDTYMKMAEMSEDEM 116
RVGY+ QHA + + ++ Q+ + D E ++ K+ E ++
Sbjct: 751 FKHPNLRVGYVAQHAFHHLDQHLEKTPSQYIQWRYAGGQDREVSEKES-RKLTEEDRAQL 809
Query: 117 NAALENVGEL--------QEELDNSDFYLID----------------------------- 139
+ GE +++L S Y I
Sbjct: 810 QRDITVNGERRRVEALIGRQKLKKSFQYEIKWFGKPHKYNTWVSREILLENGFQKFVQAF 869
Query: 140 AKVEETARGLGLTPLLDKD-------------------VAELSGGQRTKXXXXXXXXXXX 180
+E + GLG L+ +D ++ LSGGQ+ K
Sbjct: 870 DDMESSREGLGFRELIPEDIRAHFEDVGLPGDIADYSPISSLSGGQKVKVVIAACLWNNP 929
Query: 181 XXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGIT--- 237
TN+LD + + L ++++E ++ISH+ F+ + +HV +T
Sbjct: 930 QLLVLDEPTNFLDRDALGGLAVAIRDWEGGVVMISHNEEFVSALCPEHWHVEAGKVTGKG 989
Query: 238 RYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAK 297
+ ++ +FE + E+ ++E A+ ++ KL N + + +ARE++LA
Sbjct: 990 KTAVDDGKFEDLSEKDLKKIE----AKATKKKKL-------TRNEIKAKERRARERELAW 1038
Query: 298 MEIVETISEKPKPHF 312
++ + +EKPK F
Sbjct: 1039 LQSPKG-TEKPKSFF 1052
Score = 54.3 bits (128), Expect = 2e-06
Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
++R VGL + S + LSGG++ K+ A + +L+LDEPTN LD DA
Sbjct: 888 DIRAHFEDVGLPGDIADYSPISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRDALG 947
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGL 502
L A+ ++ G V+M+SH EF L
Sbjct: 948 GLAVAIRDWEGGVVMISHNEEFVSAL 973
emb|CAA13130| (AJ231088) z25r [Vibrio cholerae]
Length = 173
Score = 77.6 bits (188), Expect = 2e-13
Identities = 46/157 (29%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 239 YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKM 298
Y Y E+ + + +L S + + A+ +L+ F+AR AN + + QA +R +++ K+
Sbjct: 9 YPGNYDEYMTAAIQARERLLSDNAKKKAQITELQTFVARFSANASKAKQATSRARQIDKI 68
Query: 299 EIVET-ISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGS 357
++ E S + P F+ S++ R ++L G++ L S N E G+++A IG
Sbjct: 69 KLDEVKASSRQNPFIRFEQSKELFRNALIVENLSQGFDHDLFSNFNAIFEVGERVAIIGE 128
Query: 358 NGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQE 394
NG+GK+TLL +L G++ G + +I YY Q+
Sbjct: 129 NGVGKTTLLNTLAGVLEPRSGMYKWSENSNIGYYAQD 165
Score = 54.3 bits (128), Expect = 2e-06
Identities = 27/70 (38%), Positives = 38/70 (53%), Gaps = 1/70 (1%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
L V+NLS GF D +F + + GE + +G NG GK+T +N + G L P G WS
Sbjct: 96 LIVENLSQGF-DHDLFSNFNAIFEVGERVAIIGENGVGKTTLLNTLAGVLEPRSGMYKWS 154
Query: 64 KKHRVGYMDQ 73
+ +GY Q
Sbjct: 155 ENSNIGYYAQ 164
gb|AAF23272.1|AF101263_2 (AF121672) ABC transporter MreA [Staphylococcus aureus]
Length = 261
Score = 77.3 bits (187), Expect = 3e-13
Identities = 57/197 (28%), Positives = 100/197 (49%), Gaps = 26/197 (13%)
Query: 324 VFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
VFE K++ Y+ + + IN+K+ G+ +A +G NG GKSTLLK ++GL+P GE+
Sbjct: 10 VFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIFV 69
Query: 383 GNFQ--------DIAYYEQE-----------IKNP--SQKTVLDDLWDEYPSWNQAELRG 421
G ++Y Q+ +K S T L+ + S + ++
Sbjct: 70 GGIDFKNKKTSIKLSYVSQKANAFNSGFPASVKEVVLSGLTKTKRLFQTFNSKDNEKVIK 129
Query: 422 ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
L R+ + + I + LSGG+Q ++ A+ + +E +L+LDEPTN +D E
Sbjct: 130 VLERLNI-SDLIHKNIAELSGGQQQRVMIARALISEPAVLVLDEPTNGIDAKHVSEFYNT 188
Query: 482 L--IEYPG-TVLMVSHE 495
L ++ G T+++V+H+
Sbjct: 189 LDQLKQEGITIILVTHD 205
Score = 70.6 bits (170), Expect = 3e-11
Identities = 61/271 (22%), Positives = 114/271 (41%), Gaps = 31/271 (11%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ +KN+++ + + + E+++ ++ KGE + VG NG GKST + +I G L G++
Sbjct: 10 VFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIF- 68
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
VG +D K K T L+ Q + N ++ + + L
Sbjct: 69 -----VGGID-----FKNKKTSIKLSYVSQ-------KANAFNSGFPASVKEVVLSGLTK 111
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
L + ++ D + KV + L ++ L+ K++AELSGGQ+ +
Sbjct: 112 TKRLFQTFNSKD----NEKVIKVLERLNISDLIHKNIAELSGGQQQRVMIARALISEPAV 167
Query: 183 XXXXXXTNYLDEEHILWLKN---YLKNYENAFILISHDVPFMDEV------VNIIYHVHG 233
TN +D +H+ N LK IL++HD+ + + +N H HG
Sbjct: 168 LVLDEPTNGIDAKHVSEFYNTLDQLKQEGITIILVTHDIGVVADTATEVACLNKHLHFHG 227
Query: 234 LGITRYSMGYAEFERVFEEKKAQLESLHNAQ 264
S+ E +++ ++ HN +
Sbjct: 228 TTDEFKSLDEVEISKIYGHPVRFVDHQHNRE 258
dbj|BAA33896.1| (AB018538) elongation factor 3 [Schizosaccharomyces pombe]
Length = 513
Score = 76.9 bits (186), Expect = 4e-13
Identities = 101/443 (22%), Positives = 165/443 (36%), Gaps = 99/443 (22%)
Query: 25 RLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKH-RVGYMDQHAVLGKGKTT 83
RL +G G G NG GKST M I G+V H R Y++
Sbjct: 7 RLKRGRRYGLCGPNGSGKSTLMRAIVN------GQVEGFPTHLRTVYVEH---------- 50
Query: 84 REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVE 143
DI+ DT + + +++ E+ + L + F
Sbjct: 51 ------------DIDESEADT--PSVDFILQDPAVPIKDRDEIVKALKENSF-------- 88
Query: 144 ETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNY 203
L++ + LSGG + K TN+LD ++ WL+N+
Sbjct: 89 -------TDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLDVVNVAWLENF 141
Query: 204 LKNYEN-AFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHN 262
L N ++ + I++SHD F+D VV I H + +Y +EF + K+ E L
Sbjct: 142 LVNQKDVSSIIVSHDSGFLDHVVQAIIHYERFKLRKYLGNMSEFVKKVPSAKSYYE-LGA 200
Query: 263 AQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSR 322
+++ + F+ K +++ + K++ H F++
Sbjct: 201 SEMEFKFPEPGFLE----------GVKTKQRAIIKVQ-----------HMSFQYP----- 234
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
G ++P ++I+ +V +IA IG NG GKSTL+K L G + GE+ +
Sbjct: 235 ----------GTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGEIYQ 284
Query: 383 GNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVY 438
IAY Q + + KT EY W + L A SRV
Sbjct: 285 HENCRIAYVAQAAFTHLGHHPDKTP-----SEYIQWR------FQSGEDLEAMDKASRVI 333
Query: 439 VLSGGEQAKLRFAKLMNTESNIL 461
+ E K + K+ T+ IL
Sbjct: 334 SEADEEAMKNKIFKIEGTQRKIL 356
Score = 71.4 bits (172), Expect = 2e-11
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 15/179 (8%)
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE------KGNFQDIAYYEQEIKN 397
L+++ G++ G NG GKSTL+++++ +G+VE + + + E E
Sbjct: 6 LRLKRGRRYGLCGPNGSGKSTLMRAIV------NGQVEGFPTHLRTVYVEHDIDESEADT 59
Query: 398 PSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
PS +L D P ++ E+ AL T + I + LSGG + KL + M
Sbjct: 60 PSVDFILQD--PAVPIKDRDEIVKALKENSFTDELINMPIGSLSGGWKMKLALTRAMFKN 117
Query: 458 SNILILDEPTNHLDVDAKEELKRALIEYPG-TVLMVSHEPEFYEGLVSDVINCEEWTTR 515
+IL+LDEPTNHLDV L+ L+ + ++VSH+ F + +V +I+ E + R
Sbjct: 118 PDILLLDEPTNHLDVVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVVQAIIHYERFKLR 176
Score = 57.0 bits (135), Expect = 4e-07
Identities = 67/289 (23%), Positives = 107/289 (36%), Gaps = 75/289 (25%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V+++S + + D+SF++ I +G NG GKST + ++TG L+P G+
Sbjct: 222 AIIKVQHMSFQYPGTSKPQLNDISFQVSLSSRIAVIGPNGAGKSTLIKVLTGELLPTVGE 281
Query: 60 VIWSKKHRVGYMDQHAVLGKG----KTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDE 115
+ + R+ Y+ Q A G KT E + FQ D+EA ++ ++E E+
Sbjct: 282 IYQHENCRIAYVAQAAFTHLGHHPDKTPSEYIQWRFQSGEDLEA-MDKASRVISEADEEA 340
Query: 116 MNAAL--------------------------------ENVGELQEE-----------LDN 132
M + EN+G E L
Sbjct: 341 MKNKIFKIEGTQRKILGIHSRRKLKNSYEYECSFLVGENIGMKSERWVPMMSSDNAWLPR 400
Query: 133 SDFYLIDAK-VEETARGLGL-----TPLLDKDVAE-------------------LSGGQR 167
+ AK V E R L PL+ K++ E LSGGQ+
Sbjct: 401 GELMETHAKMVAEVDRAEALKSGQFRPLVRKEIEEHCSLLGLDAELVSHSRIKGLSGGQK 460
Query: 168 TKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISH 216
K TNYLD + + L LKN+ +L++H
Sbjct: 461 VKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNFGGGVVLVTH 509
Score = 54.3 bits (128), Expect = 2e-06
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ + +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 432 EIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLG 491
Query: 477 ELKRALIEYPGTVLMVSHEPEF 498
L + L + G V++V+H EF
Sbjct: 492 ALSKGLKNFGGGVVLVTHYREF 513
dbj|BAA33892.1| (AB018534) elongation factor 3 [Candida zeylanoides]
Length = 512
Score = 76.9 bits (186), Expect = 4e-13
Identities = 91/396 (22%), Positives = 140/396 (34%), Gaps = 91/396 (22%)
Query: 24 FRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTT 83
FRL + G G NG GKST M I V EG
Sbjct: 6 FRLKRNRRYGLCGPNGAGKSTLMRAIANGQV--EG------------------------- 38
Query: 84 REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVE 143
F + + Y+ E +++ EN + + + + L V
Sbjct: 39 -----------FPTQDECKTVYV------EHDIDGTHENTTVVDFVIQDGEVGLTKDVVI 81
Query: 144 ETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKN 202
+ R + +++ + LSGG + K TN+LD ++ WL N
Sbjct: 82 DKLREFNFSEEMINMPIQSLSGGWKMKLALARAVLKNADILLLDEPTNHLDTVNVAWLVN 141
Query: 203 YLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHN 262
YL+ I++SHD F+D VV I H G + +Y +EF ++ +
Sbjct: 142 YLQTCGITSIIVSHDSGFLDNVVQYIIHYEGFKLRKYKGNLSEF----------VKKCPS 191
Query: 263 AQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSR 322
AQ + D R G K ++K + K+ + F++
Sbjct: 192 AQSYYELGASDLEFRFPEPGFLEG-VKTKQKAIVKVN-----------NMTFQYP----- 234
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
G ++P +IN + +IA IG NG GKSTL+ L G + +G+V
Sbjct: 235 ----------GTSKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTEGDVYV 284
Query: 383 GNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSW 414
IAY +Q I N LD EY W
Sbjct: 285 HENCRIAYIKQHAFAHIDNH-----LDSTPSEYIQW 315
Score = 66.7 bits (160), Expect = 4e-10
Identities = 50/181 (27%), Positives = 86/181 (46%), Gaps = 11/181 (6%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIK 396
++ +++ ++ G NG GKSTL++++ +G+VE QD Y E +I
Sbjct: 2 NKTQFRLKRNRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQDECKTVYVEHDID 55
Query: 397 NPSQKTVLDD--LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
+ T + D + D + + L + + I + LSGG + KL A+ +
Sbjct: 56 GTHENTTVVDFVIQDGEVGLTKDVVIDKLREFNFSEEMINMPIQSLSGGWKMKLALARAV 115
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTT 514
++IL+LDEPTNHLD L L T ++VSH+ F + +V +I+ E +
Sbjct: 116 LKNADILLLDEPTNHLDTVNVAWLVNYLQTCGITSIIVSHDSGFLDNVVQYIIHYEGFKL 175
Query: 515 R 515
R
Sbjct: 176 R 176
Score = 58.6 bits (139), Expect = 1e-07
Identities = 59/291 (20%), Positives = 101/291 (34%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + + D++F+ I +G NG GKST +N++TG L+P EG
Sbjct: 222 AIVKVNNMTFQYPGTSKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTEGD 281
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKMAEMSEDEM 116
V + R+ Y+ QHA +E Q+ F + ++ ++ E E+ M
Sbjct: 282 VYVHENCRIAYIKQHAFAHIDNHLDSTPSEYIQWRFHTGEDRETMDRASRQINESDENAM 341
Query: 117 NAAL-------------------------------ENVGELQEE---------------- 129
N EN+G E
Sbjct: 342 NKIFKIEGTPRRIQGIHARRKFKNSYEYECSWMLGENIGMKNERWVPMMSVDNTWLPRGE 401
Query: 130 -LDNSDFYLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
++ + + ++E PL K++ E LSGGQ+ K
Sbjct: 402 LMETHSKLVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLEPELVSHSRIRGLSGGQKVK 461
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L +K +E ++I+H F
Sbjct: 462 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKAIKAFEGGVVIITHSAEF 512
Score = 54.7 bits (129), Expect = 2e-06
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A +GL + + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 431 EIEEHCAMLGLEPELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLG 490
Query: 477 ELKRALIEYPGTVLMVSHEPEF 498
L +A+ + G V++++H EF
Sbjct: 491 ALSKAIKAFEGGVVIITHSAEF 512
dbj|BAA33891.1| (AB018533) elongation factor 3 [Candida melibiosica]
Length = 512
Score = 76.9 bits (186), Expect = 4e-13
Identities = 91/396 (22%), Positives = 140/396 (34%), Gaps = 91/396 (22%)
Query: 24 FRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTT 83
FRL + G G NG GKST M I V EG
Sbjct: 6 FRLKRNRRYGLCGPNGAGKSTLMRAIANGQV--EG------------------------- 38
Query: 84 REALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVE 143
F + + Y+ E +++ EN + + + + L V
Sbjct: 39 -----------FPTQDECKTVYV------EHDIDGTHENTTVVDFVIQDGEVGLTKDVVI 81
Query: 144 ETARGLGLTP-LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKN 202
+ R + +++ + LSGG + K TN+LD ++ WL N
Sbjct: 82 DKLREFNFSEEMINMPIQSLSGGWKMKLALARAVLKNADILLLDEPTNHLDTVNVAWLVN 141
Query: 203 YLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHN 262
YL+ I++SHD F+D VV I H G + +Y +EF ++ +
Sbjct: 142 YLQTCGITSIIVSHDSGFLDNVVQYIIHYEGFKLRKYKGNLSEF----------VKKCPS 191
Query: 263 AQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSR 322
AQ + D R G K ++K + K+ + F++
Sbjct: 192 AQSYYELGASDLEFRFPEPGFLEG-VKTKQKAIVKVN-----------NMTFQYP----- 234
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
G ++P +IN + +IA IG NG GKSTL+ L G + +G+V
Sbjct: 235 ----------GTSKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTEGDVYV 284
Query: 383 GNFQDIAYYEQ----EIKNPSQKTVLDDLWDEYPSW 414
IAY +Q I N LD EY W
Sbjct: 285 HENCRIAYIKQHAFAHIDNH-----LDSTPSEYIQW 315
Score = 66.7 bits (160), Expect = 4e-10
Identities = 50/181 (27%), Positives = 86/181 (46%), Gaps = 11/181 (6%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQEIK 396
++ +++ ++ G NG GKSTL++++ +G+VE QD Y E +I
Sbjct: 2 NKTQFRLKRNRRYGLCGPNGAGKSTLMRAIA------NGQVEGFPTQDECKTVYVEHDID 55
Query: 397 NPSQKTVLDD--LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
+ T + D + D + + L + + I + LSGG + KL A+ +
Sbjct: 56 GTHENTTVVDFVIQDGEVGLTKDVVIDKLREFNFSEEMINMPIQSLSGGWKMKLALARAV 115
Query: 455 NTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWTT 514
++IL+LDEPTNHLD L L T ++VSH+ F + +V +I+ E +
Sbjct: 116 LKNADILLLDEPTNHLDTVNVAWLVNYLQTCGITSIIVSHDSGFLDNVVQYIIHYEGFKL 175
Query: 515 R 515
R
Sbjct: 176 R 176
Score = 58.6 bits (139), Expect = 1e-07
Identities = 59/291 (20%), Positives = 101/291 (34%), Gaps = 72/291 (24%)
Query: 2 SILNVKNLSHGFG--DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+I+ V N++ + + D++F+ I +G NG GKST +N++TG L+P EG
Sbjct: 222 AIVKVNNMTFQYPGTSKPQIRDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTEGD 281
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLF---DIEAQINDTYMKMAEMSEDEM 116
V + R+ Y+ QHA +E Q+ F + ++ ++ E E+ M
Sbjct: 282 VYVHENCRIAYIKQHAFAHIDNHLDSTPSEYIQWRFHTGEDRETMDRASRQINESDENAM 341
Query: 117 NAAL-------------------------------ENVGELQEE---------------- 129
N EN+G E
Sbjct: 342 NKIFKIEGTPRRIQGIHARRKFKNSYEYECSWMLGENIGMKNERWVPMMSVDNTWLPRSE 401
Query: 130 -LDNSDFYLIDAKVEETARGLGLTPLLDKDVAE-------------------LSGGQRTK 169
++ + + ++E PL K++ E LSGGQ+ K
Sbjct: 402 LMETHSKLVAEVDMKEALASGQFRPLTRKEIEEHCAMLGLEPELVSHSRIRGLSGGQKVK 461
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPF 220
TNYLD + + L +K +E ++I+H F
Sbjct: 462 LVLAACTWQRPHLIVLDEPTNYLDRDSLGALSKAIKAFEGGVVIITHSAEF 512
Score = 54.7 bits (129), Expect = 2e-06
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ A +GL + + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 431 EIEEHCAMLGLEPELVSHSRIRGLSGGQKVKLVLAACTWQRPHLIVLDEPTNYLDRDSLG 490
Query: 477 ELKRALIEYPGTVLMVSHEPEF 498
L +A+ + G V++++H EF
Sbjct: 491 ALSKAIKAFEGGVVIITHSAEF 512
gi|2648707 (AE000976) cobalt transport ATP-binding protein (cbiO-2)
[Archaeoglobus fulgidus]
Length = 238
Score = 76.5 bits (185), Expect = 5e-13
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 23/198 (11%)
Query: 332 IGYNEPLSS----EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDG-------EV 380
+ Y+ P S E++L++ G ++ IG+NG GKSTL+ L GL+ G E+
Sbjct: 13 VSYDYPDGSAGVREVSLEIFEGDRVGLIGANGSGKSTLILLLAGLLRPTKGKIRIFGREI 72
Query: 381 EKGNFQDIAYYEQEI-KNPSQ----KTVLDDLW--DEYPSWNQAELRGALARV----GLT 429
+K N ++I + +NP TV D+L W++ E+ A+ G+T
Sbjct: 73 DKKNVEEIRRKIGVVFQNPDDFLFNPTVRDELLYVPRQLEWSEEEMENAVKEYAEMFGIT 132
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTV 489
+ + LSGGE+ K+ A ++ + +L+LDEPT ++D K + + L ++ GT+
Sbjct: 133 -HLLNKPPFRLSGGEKKKVEIASVLIYKPEVLLLDEPTAYVDGKTKRLILKILEDFKGTL 191
Query: 490 LMVSHEPEFYEGLVSDVI 507
++ +HE + E L +
Sbjct: 192 VIATHELDVAEKLADKFV 209
Score = 62.5 bits (149), Expect = 8e-09
Identities = 53/233 (22%), Positives = 105/233 (44%), Gaps = 38/233 (16%)
Query: 1 MSILNVKNLSHGFGD-RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
+ ++ ++S+ + D A +VS + +G+ +G +GANG GKST + ++ G L P +GK
Sbjct: 5 LKVIEADSVSYDYPDGSAGVREVSLEIFEGDRVGLIGANGSGKSTLILLLAGLLRPTKGK 64
Query: 60 V-IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQ----YLFDIEAQINDTYM-KMAEMSE 113
+ I+ ++ +D+ V + R + FQ +LF+ + Y+ + E SE
Sbjct: 65 IRIFGRE-----IDKKNV----EEIRRKIGVVFQNPDDFLFNPTVRDELLYVPRQLEWSE 115
Query: 114 DEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXX 173
+EM A V+E A G+T LL+K LSGG++ K
Sbjct: 116 EEMENA----------------------VKEYAEMFGITHLLNKPPFRLSGGEKKKVEIA 153
Query: 174 XXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVN 226
T Y+D + + L++++ ++ +H++ +++ +
Sbjct: 154 SVLIYKPEVLLLDEPTAYVDGKTKRLILKILEDFKGTLVIATHELDVAEKLAD 206
dbj|BAA22247| (AB000617) YcdI [Bacillus subtilis] >gi|2632572|emb|CAB12080|
(Z99105) similar to ABC transporter (ATP-binding
protein) [Bacillus subtilis]
Length = 231
Score = 75.7 bits (183), Expect = 8e-13
Identities = 57/207 (27%), Positives = 104/207 (49%), Gaps = 25/207 (12%)
Query: 328 KDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV------ 380
KD+V GY+ P+ +++L +ESG+ + G NG KSTL+K ++G++ +G V
Sbjct: 7 KDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKRN 66
Query: 381 EKGNFQDIAYYEQEIKNPS---QKTVLD----------DLWDEYPSWNQAELRGALARVG 427
+G I Y Q+I + + TVL+ + + E+ AL V
Sbjct: 67 TEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNEEDHLEVEKALKMVE 126
Query: 428 LTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK----EELKRALI 483
+ + ++ LSGG++ K+ A+++ + ++L+LDEPT +D D++ E + +
Sbjct: 127 MWDLR-HRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYDSRKGFYEFMHHLVK 185
Query: 484 EYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ TV+MV+HE + + VI E
Sbjct: 186 NHNRTVVMVTHEQNEVQQFLDKVIRLE 212
Score = 57.8 bits (137), Expect = 2e-07
Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 32/235 (13%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+++++K++ G+ + + VS + GE +G G NG KST + ++ G L P EG V
Sbjct: 1 MNLVSLKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTV 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
SK++ G R + Q + A T +++ + +
Sbjct: 61 TISKRNTEG-------------KRLTIGYVPQQISSFNAGFPSTVLELVQ-------SGR 100
Query: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXX 180
G+ + L+ D +VE+ + + + L + + +LSGGQ+ K
Sbjct: 101 YTKGKWFKRLNEED----HLEVEKALKMVEMWDLRHRKIGDLSGGQKQKICIARMLASNP 156
Query: 181 XXXXXXXXTNYLDEE----HILWLKNYLKNYENAFILISHD----VPFMDEVVNI 227
T +D + ++ + +KN+ ++++H+ F+D+V+ +
Sbjct: 157 DLLMLDEPTTAVDYDSRKGFYEFMHHLVKNHNRTVVMVTHEQNEVQQFLDKVIRL 211
dbj|BAA79499.1| (AP000059) 264aa long hypothetical ABC transporter ATP-binding
protein [Aeropyrum pernix]
Length = 264
Score = 74.1 bits (179), Expect = 2e-12
Identities = 62/215 (28%), Positives = 100/215 (45%), Gaps = 25/215 (11%)
Query: 311 HFDFKFS----RKPSRLVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTL 365
H +KFS + S L +DL + YN EP+ S +NL+ + IG NG GK+T
Sbjct: 2 HSIYKFSTCNVHRESPLRVRVEDLTVAYNGEPVLSGVNLEFRGPGLVQIIGPNGAGKTTF 61
Query: 366 LKSLMGLIPS------LDGEVEKGNFQDIAYYEQEI-KNPSQKTVLDDLWDEYPSWNQAE 418
LK+++GLI LDG G + + Y + +NPS + E+
Sbjct: 62 LKAILGLIKPARGRVFLDGFEATGRPEMVGRYAGYVPQNPSAPKLSPMTVREFVE-TSLR 120
Query: 419 LRG----------ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTN 468
LRG L +G+ + +ESR++ LS G ++ A+ + + +L++DEP
Sbjct: 121 LRGVTRARERAVEVLHTLGIRGEVLESRLWELSMGMLQRVFIARAIAPDPKMLVMDEPLA 180
Query: 469 HLDVDAKEELKRAL--IEYPGTVLMVSHEPEFYEG 501
+D + E+ R + + VLM SH+P G
Sbjct: 181 SVDPAGRMEIARIIAGLARERLVLMTSHDPSLLLG 215
gb|AAD36384.1|AE001785_15 (AE001785) ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 580
Score = 74.1 bits (179), Expect = 2e-12
Identities = 52/195 (26%), Positives = 98/195 (49%), Gaps = 20/195 (10%)
Query: 320 PSRLVFEAKDLVIGYN--EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLD 377
P V+E D+ G+ +P+ +++ ++ + A +G +G GKSTLL L+GL + +
Sbjct: 336 PGSPVYELIDVTFGFEPGKPILKQVSFTIQPREIAAIVGLSGEGKSTLLNILLGLEQNYE 395
Query: 378 GEVEK-GN----------FQDIAYYEQEI---KNPSQKTVLDDLWDEYPSWNQAELRGAL 423
G V+ GN F+ +A+Y Q + + + ++ L EY + L
Sbjct: 396 GVVKLFGNDLKQVMPSAVFEHVAFYSQNVGIFNDTLENNIV--LGREYDEKKLERIIKEL 453
Query: 424 ARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALI 483
L +++ +SGGE+ +++ A+L + +++LDEP +LD ++ L LI
Sbjct: 454 GIEHLRGRKLGEGGSFVSGGEKQRIQLARLFYADKPVVVLDEPLTNLDTITEKFLLEKLI 513
Query: 484 EY--PGTVLMVSHEP 496
E+ T +M+SH+P
Sbjct: 514 EFLKEKTAIMISHKP 528
gi|2622836 (AE000928) cobalt transport ATP-binding protein O [Methanobacterium
thermoautotrophicum]
Length = 311
Score = 74.1 bits (179), Expect = 2e-12
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 32/202 (15%)
Query: 324 VFEAKDLVIGYNE--PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE 381
+ E +DL Y + P IN+KVE G+++A IG NG GKSTL L G++ GEV
Sbjct: 1 MIELRDLSYSYPDGTPALRGINMKVERGERVAVIGPNGAGKSTLFLHLNGILKPAAGEVI 60
Query: 382 KGNFQDIAYYEQEIKNPSQKTVL------DDLWDEYPSWNQAELRGALARVGLTAKQIES 435
+ + Y + E+ QK + D L+ P+ + G + +GL ++E
Sbjct: 61 IDG-ERVDYSKDELIKIRQKVGIVFQNPDDQLFS--PTVREDVAFGPM-NLGLPEDEVEE 116
Query: 436 RV-----------------YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
RV + LSGGE+ ++ A ++ + I++LDEPT LD + + +
Sbjct: 117 RVAESLEKVGMSGYENRAPHHLSGGEKKRVAIAGILAMKPEIMVLDEPTTGLDPETADGI 176
Query: 479 KRALIEYPG---TVLMVSHEPE 497
R L+E TV++ SH+ E
Sbjct: 177 IRILLELSREGITVMISSHDVE 198
gb|AAD35218.1|AE001698_7 (AE001698) zinc ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 240
Score = 73.7 bits (178), Expect = 3e-12
Identities = 54/181 (29%), Positives = 91/181 (49%), Gaps = 10/181 (5%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ E K+L N+ + + VE G+ + IG NG GK+TL++ L+G I + +G+VE
Sbjct: 3 IVEVKNLTYRINDFEILKNVTFSVEEGEFVGIIGPNGAGKTTLVRILVGDIKNYEGKVEV 62
Query: 383 ----GNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVY 438
G + ++E ++ ++ Y + ++R L VG+ K+ +
Sbjct: 63 RGKIGYLPQLHQVQREFPITVKEFAAMGMYGRYRKIDWEKVRSTLKDVGILHKE-NDPIK 121
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK----EELKRALIEYPGTVLMVSH 494
LSGGE +L A+ + ++ +IL+LDEP +D K E L R E TV+MVSH
Sbjct: 122 NLSGGEFQRLSLARALLSDPDILVLDEPEAGVDEMGKASFYELLNRLRKEKNITVIMVSH 181
Query: 495 E 495
+
Sbjct: 182 D 182
Score = 59.7 bits (142), Expect = 5e-08
Identities = 39/132 (29%), Positives = 69/132 (51%), Gaps = 15/132 (11%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M I+ VKNL++ D I ++V+F + +GE +G +G NG GK+T + I+ G + EGKV
Sbjct: 1 MKIVEVKNLTYRINDFEILKNVTFSVEEGEFVGIIGPNGAGKTTLVRILVGDIKNYEGKV 60
Query: 61 IWSKKHRVGYMDQ-HAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
+ ++GY+ Q H V + T + A Y + ++ +++ +
Sbjct: 61 --EVRGKIGYLPQLHQVQREFPITVKEFAAM------------GMYGRYRKIDWEKVRST 106
Query: 120 LENVGELQEELD 131
L++VG L +E D
Sbjct: 107 LKDVGILHKEND 118
gi|2502071 (AF026542) ScnT [Streptococcus pyogenes]
Length = 689
Score = 73.7 bits (178), Expect = 3e-12
Identities = 63/212 (29%), Positives = 106/212 (49%), Gaps = 24/212 (11%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ + K+L Y + P+ S++NL + G+KIA +G +G GKSTLL L G+ + DG +E
Sbjct: 462 LIKTKNLNFSYGKNPIYSDVNLTISKGEKIAIVGKSGSGKSTLLLMLAGI--TYDGSLEY 519
Query: 383 G--NFQDIAYYEQEIKNPSQKTV-------LDDLWDEYPSWNQAELRGALARVGLTAKQI 433
G F+D + P + TV LDD+ Y N +AR+ +I
Sbjct: 520 GIEKFKDNLRVVLQNMTPRKGTVLENLEWTLDDVTPLYQVLNDTTADEVIARL---PNKI 576
Query: 434 ESRVYV----LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE----Y 485
SR+ LSGG+ KL AK + E++I+ DE ++LD +K ++ +++
Sbjct: 577 HSRLLKQGKNLSGGQIQKLLIAKSLLKENSIIFWDEAFSNLDEQSKNKIYDNVLQNNRYS 636
Query: 486 PGTVLMVSHEPEFYEGLVSDVINCEEWTTRIL 517
T+L+VSH + V +I + T +++
Sbjct: 637 DRTMLIVSHHLDIV-NYVDSIIFIDNETGKVI 667
Score = 48.0 bits (112), Expect = 2e-04
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ KNL+ +G I+ DV+ + KGE I VG +G GKST + ++ G + +G + +
Sbjct: 462 LIKTKNLNFSYGKNPIYSDVNLTISKGEKIAIVGKSGSGKSTLLLMLAG--ITYDGSLEY 519
Query: 63 SKKHRVGYMDQHAVLGKGKTTRE-ALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
+ + D V+ + T R+ + E ++ D + Y + + + DE+ A L
Sbjct: 520 GIEK---FKDNLRVVLQNMTPRKGTVLENLEWTLD---DVTPLYQVLNDTTADEVIARLP 573
Query: 122 N 122
N
Sbjct: 574 N 574
pir||A39203 comA protein - Streptococcus pneumoniae
Length = 717
Score = 73.7 bits (178), Expect = 3e-12
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 288 AKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE 347
A+ +L ++ +V + E+ K D + + F+ GY + S+INL V
Sbjct: 451 AQVANNRLNEVYLVASEFEEKKTVEDLSLMK--GDMTFKQVHYKYGYGRDVLSDINLTVP 508
Query: 348 SGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKG----NFQDIAYYEQEIKNPSQK-- 401
G K+AF+G +G GK+TL K ++ GE+ G N D Q I Q+
Sbjct: 509 QGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGGVNLNQIDKKALRQYINYLPQQPY 568
Query: 402 ----TVLDDLW----------DEYPSWNQAELRGALARVGLTAK-QIESRVYVLSGGEQA 446
T+L++L D + AE+R + R+ L + ++ S +SGG++
Sbjct: 569 VFNGTILENLLLGAKEGTTQEDILRAVELAEIREDIERMPLNYQTELTSDGAGISGGQRQ 628
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSH 494
++ A+ + T++ +LILDE T+ LD+ ++ + LI T++ ++H
Sbjct: 629 RIALARALLTDAPVLILDEATSSLDILTEKRIVDNLIALDKTLIFIAH 676
sp|Q03727|COMA_STRPN TRANSPORT ATP-BINDING PROTEIN COMA >gi|520738 (M36180) comA protein
[Streptococcus pneumoniae]
Length = 717
Score = 73.7 bits (178), Expect = 3e-12
Identities = 60/228 (26%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 288 AKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE 347
A+ +L ++ +V + E+ K D + + F+ GY + S+INL V
Sbjct: 451 AQVANNRLNEVYLVASEFEEKKTVEDLSLMK--GDMTFKQVHYKYGYGRDVLSDINLTVP 508
Query: 348 SGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKG----NFQDIAYYEQEIKNPSQK-- 401
G K+AF+G +G GK+TL K ++ GE+ G N D Q I Q+
Sbjct: 509 QGSKVAFVGISGSGKTTLAKMMVNFYDPSQGEISLGGVNLNQIDKKALRQYINYLPQQPY 568
Query: 402 ----TVLDDLW----------DEYPSWNQAELRGALARVGLTAK-QIESRVYVLSGGEQA 446
T+L++L D + AE+R + R+ L + ++ S +SGG++
Sbjct: 569 VFNGTILENLLLGAKEGTTQEDILRAVELAEIREDIERMPLNYQTELTSDGAGISGGQRQ 628
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSH 494
++ A+ + T++ +LILDE T+ LD+ ++ + LI T++ ++H
Sbjct: 629 RIALARALLTDAPVLILDEATSSLDILTEKRIVDNLIALDKTLIFIAH 676
gi|3688824 (AF084104) ABC transporter ATP-binding protein [Bacillus firmus]
Length = 290
Score = 73.4 bits (177), Expect = 4e-12
Identities = 52/186 (27%), Positives = 91/186 (47%), Gaps = 19/186 (10%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--------EKGNFQDIAYYEQ 393
++ ++E G +A +G+NG GKSTL +++M L+ GE+ E G Q AY Q
Sbjct: 20 LSCQIEPGSIVALVGNNGAGKSTLFQTIMELVKKESGEIDYHFGTDRENGWKQAFAYVPQ 79
Query: 394 EIKNPSQKTV--LDDLWD-EYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRF 450
T+ L D ++ YP WN+ E + L K+ +V LSGG Q K
Sbjct: 80 TPLMYHGFTIAQLADFFEMSYPGWNRNEFDRLTSLFDLPLKK---QVEKLSGGMQKKAML 136
Query: 451 AKLMNTESNILILDEPTNHLDVDAKEELKRALIEY-----PGTVLMVSHEPEFYEGLVSD 505
+ + +S +L+LDEP +D + +E+++ ++ Y T+L+ +H + L
Sbjct: 137 SLTLARQSKVLLLDEPLAGVDFEGQEQMRDEMVRYMERAEDQTILLSTHSADEIRTLADY 196
Query: 506 VINCEE 511
++ +E
Sbjct: 197 ILLMKE 202
gi|2281663 (AF007381) gliding motility protein [Flavobacterium johnsoniae]
Length = 298
Score = 73.0 bits (176), Expect = 6e-12
Identities = 69/286 (24%), Positives = 123/286 (42%), Gaps = 40/286 (13%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWS 63
+ V ++S +G++ ++SF++ KGE +GF+G NG GKST M I+T L+ D G +
Sbjct: 3 IEVNSISKSYGEQKALNEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLLADSGSAL-- 60
Query: 64 KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENV 123
++ H V+ T +A+ ++ YL + D Y++
Sbjct: 61 -------VNGHDVM----TNAKAVQQSIGYLPEHNPLYLDLYVR---------------- 93
Query: 124 GELQEELDNSDFYLID-AKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ N+D Y + +++EE + GLTP K +++LS G R +
Sbjct: 94 ---EYLAFNADVYKVPKSRIEEVIQLTGLTPESHKKISQLSKGYRQRVGLANALLHNPDV 150
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNY--ENAFILISHDVPFMDEVVNIIYHVHGLGITRYS 240
T LD ++ ++N +KN + L +H M EV I V + +
Sbjct: 151 LILDEPTTGLDPNQLMEIRNVIKNIGKDKTIFLSTH---IMQEVEAICDRVIIIDKGQIV 207
Query: 241 MGYAEFERVFEEKKAQLESLHNAQVAEQ--AKLKDFIARKKANVAT 284
V +K+ +E + Q+ EQ AKL++ + K + T
Sbjct: 208 ADNKLDHLVAADKEQVIEVEFDYQIEEQLLAKLENIASYKNTHDMT 253
Score = 57.4 bits (136), Expect = 3e-07
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 25/187 (13%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV----------EKGNFQDIA 389
+EI+ K+E G+ + F+G NG GKSTL+K L + + G K Q I
Sbjct: 19 NEISFKIEKGEIVGFLGPNGAGKSTLMKILTTYLLADSGSALVNGHDVMTNAKAVQQSIG 78
Query: 390 YYEQEIKNPSQKTVLDDLWDEYPSWN-------QAELRGALARVGLTAKQIESRVYVLSG 442
Y + NP LD EY ++N ++ + + GLT + ++ LS
Sbjct: 79 YLPEH--NP---LYLDLYVREYLAFNADVYKVPKSRIEEVIQLTGLTPES-HKKISQLSK 132
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL--IEYPGTVLMVSHEPEFYE 500
G + ++ A + ++LILDEPT LD + E++ + I T+ + +H + E
Sbjct: 133 GYRQRVGLANALLHNPDVLILDEPTTGLDPNQLMEIRNVIKNIGKDKTIFLSTHIMQEVE 192
Query: 501 GLVSDVI 507
+ VI
Sbjct: 193 AICDRVI 199
emb|CAB64978.1| (AJ243209) putative ABC transporter [Enterococcus faecium]
Length = 135
Score = 72.6 bits (175), Expect = 7e-12
Identities = 44/143 (30%), Positives = 82/143 (56%), Gaps = 12/143 (8%)
Query: 357 SNGIGKSTLLKSLM----GLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYP 412
+NG+GK+TLL+ + G++ S K +FQ Y ++ + S+++++ + +
Sbjct: 1 ANGVGKTTLLEHIRKQGEGILLS-----PKVSFQ--VYQQKGYQMTSEESIIRFVMRQ-T 52
Query: 413 SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
++++ +R L +G+ + + + LSGGE +L A L SN+L+LDEPTN +D+
Sbjct: 53 EFSESLVRSLLNHLGVAQETLTKPLCTLSGGEATRLTIALLFTKPSNVLLLDEPTNFIDM 112
Query: 473 DAKEELKRALIEYPGTVLMVSHE 495
E L++ + YPGT+L SH+
Sbjct: 113 ATIEALEKLMQIYPGTILFTSHD 135
gi|2983897 (AE000744) ABC transporter [Aquifex aeolicus]
Length = 247
Score = 72.6 bits (175), Expect = 7e-12
Identities = 57/201 (28%), Positives = 98/201 (48%), Gaps = 30/201 (14%)
Query: 323 LVFEAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE 381
++ E +++ GY N + I+ KVES Q +A +G +G GK+TLL+ ++GL+ L GEV
Sbjct: 1 MIVEFEEVYSGYGNTVVHKGISFKVESSQIVAIVGGSGAGKTTLLRLILGLLKPLKGEVR 60
Query: 382 KGNFQDIAYYEQEIKNPSQK--------------TVLDDLWDEYPSWNQAELRGALARV- 426
E+E++ + TVL+++ YP + +L ++ +
Sbjct: 61 LFGKSIKNLSEEELQKLRDRMGVVFQFSALFGSMTVLENVM--YPVIKKRKLDRSIVEMN 118
Query: 427 --------GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE- 477
GL + LSGG + K A+ ++ + +LILDEPT+ LD + EE
Sbjct: 119 ACFKLSVCGLKPEDFYKYPQELSGGMKKKTALARALSLDPELLILDEPTSGLDPISAEEF 178
Query: 478 ---LKRALIEYPGTVLMVSHE 495
+K + TV+MV+H+
Sbjct: 179 DNLIKTVRDTFGTTVIMVTHD 199
pir||A48779 translation elongation factor EF-3 homolog - Chlorella virus CVK2
>gi|454301|dbj|BAA03956| (D16505) translation elongation
factor-3 [Chlorella virus]
Length = 1120
Score = 72.6 bits (175), Expect = 7e-12
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 25/185 (13%)
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDI---AYYEQEI 395
++ NLK G + G NG GKSTL++++ ++G++E D+ AY E ++
Sbjct: 550 NTRFNLK--RGNRYGLCGPNGAGKSTLMRAI------VNGQLEGFPSADVLKTAYVEHDL 601
Query: 396 KNPSQKTVLDDLW--DEY---PSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRF 450
T + D DE +W++ ++ L VG ++ + + LSGG + KL
Sbjct: 602 DGSDSNTAIIDFIANDEQVKENTWSREKIVTTLESVGFDIERQSAPINTLSGGWKMKLAL 661
Query: 451 AKLMNTESNILILDEPTNHLDVDAKEELKRALIEY-----PGTVLMVSHEPEFYEGLVSD 505
A+ M ++ +L+LDEPTNHL V R LIEY + ++VSH+ F + + +
Sbjct: 662 ARAMLLDAKLLLLDEPTNHLSVSN----VRWLIEYLTNLEDVSCVIVSHDSGFLDAVCTS 717
Query: 506 VINCE 510
+I+ E
Sbjct: 718 IIHYE 722
Score = 62.8 bits (150), Expect = 6e-09
Identities = 89/414 (21%), Positives = 150/414 (35%), Gaps = 87/414 (21%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMN-IITGTLVPDEGKVIWSKKHRV 68
S +G + + + F L +G G G NG GKST M I+ G L + +
Sbjct: 539 SLAYGGKILLNNTRFNLKRGNRYGLCGPNGAGKSTLMRAIVNGQLEGFPSADVL----KT 594
Query: 69 GYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQE 128
Y++ H + G T + D A ND +K S +++ LE+VG
Sbjct: 595 AYVE-HDLDGSDSNTA---------IIDFIA--NDEQVKENTWSREKIVTTLESVG---- 638
Query: 129 ELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXX 188
D + + + LSGG + K
Sbjct: 639 ---------FDIERQSAP------------INTLSGGWKMKLALARAMLLDAKLLLLDEP 677
Query: 189 TNYLDEEHILWLKNYLKNYEN-AFILISHDVPFMDEV-VNIIYHVHGLGITRYSMGYAEF 246
TN+L ++ WL YL N E+ + +++SHD F+D V +II++ L + +Y +EF
Sbjct: 678 TNHLSVSNVRWLIEYLTNLEDVSCVIVSHDSGFLDAVCTSIIHYEPNLKLKKYKGNLSEF 737
Query: 247 ERVFEEKK---AQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVET 303
+ E A E+ + E L+ +R +A + G
Sbjct: 738 VKKRPESASYYALTETKTTWKFPEPGFLEGITSRDRAIMKLRG----------------- 780
Query: 304 ISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKS 363
FK+ +L+F+ +N +V +I +G NG GKS
Sbjct: 781 --------VGFKYP-GTEKLIFD--------------NVNAQVSLNSRIGVVGENGAGKS 817
Query: 364 TLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQA 417
L G + + G V + + Q + + + + LD ++Y W A
Sbjct: 818 ALFLVFSGGMWAPPGVVFGRPHMCVFFVWQRMLSTTSRDHLDMTPNQYIQWRYA 871
Score = 51.5 bits (121), Expect = 2e-05
Identities = 27/81 (33%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Query: 423 LARVGLTAK-QIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
+A VGL + SR+ LSGG++ KL + + ++++LDEPTN +D ++ + A
Sbjct: 975 MANVGLDPEFTTHSRIRGLSGGQKLKLVIGAALWQQPHVIVLDEPTNFVDRESLGAMAEA 1034
Query: 482 LIEYPGTVLMVSHEPEFYEGL 502
L + G V+++SH EF + +
Sbjct: 1035 LKNFGGGVVVISHSNEFVKNV 1055
Score = 45.7 bits (106), Expect = 0.001
Identities = 57/267 (21%), Positives = 97/267 (35%), Gaps = 57/267 (21%)
Query: 15 DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV----------IWSK 64
++ IF++V+ ++ IG VG NG GKS + +G + G V +W +
Sbjct: 789 EKLIFDNVNAQVSLNSRIGVVGENGAGKSALFLVFSGGMWAPPGVVFGRPHMCVFFVWQR 848
Query: 65 KHRVG-----------YMDQHAVLGKGKTTREALA-----EAFQYLFDIEA--------- 99
Y+ G+ K T + ++ E + ++D +
Sbjct: 849 MLSTTSRDHLDMTPNQYIQWRYASGEDKETLDVVSRKNNEEELKKMYDTKVVDGVKKILD 908
Query: 100 ------QINDTYMKMAEMSEDEMNA-----ALENVG--------ELQEELDNSDFYLIDA 140
++ +Y + DE LE G + +E + N F + A
Sbjct: 909 KILGRRKLKKSYEYEVQWKNDETTQWMSRERLEEYGFGKLLNDIDTKEAVANGMFKPLTA 968
Query: 141 K-VEETARGLGLTP--LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHI 197
K VEE +GL P + LSGGQ+ K TN++D E +
Sbjct: 969 KNVEEHMANVGLDPEFTTHSRIRGLSGGQKLKLVIGAALWQQPHVIVLDEPTNFVDRESL 1028
Query: 198 LWLKNYLKNYENAFILISHDVPFMDEV 224
+ LKN+ ++ISH F+ V
Sbjct: 1029 GAMAEALKNFGGGVVVISHSNEFVKNV 1055
gb|AAC96981.1| (U42580) Chlorella virus CVK2 translation elongation factor-3
homolog, refer to GenBank Accession Number D16505
[Paramecium bursaria Chlorella virus 1]
Length = 918
Score = 72.2 bits (174), Expect = 1e-11
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 17/181 (9%)
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDI---AYYEQEI 395
++ NLK G + G NG GKSTL++++ ++G++E D+ AY E ++
Sbjct: 333 NTRFNLK--RGNRYGLCGPNGAGKSTLMRAI------VNGQLEGFPSADVLKTAYVEHDL 384
Query: 396 KNPSQKTVLDDLW--DEYPS---WNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRF 450
T + D DE W++ ++ L VG ++ + + LSGG + KL
Sbjct: 385 DGSDSNTAIIDFIANDEQVKENIWSREKIVTTLESVGFDIERQSAPINTLSGGWKMKLAL 444
Query: 451 AKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG-TVLMVSHEPEFYEGLVSDVINC 509
A+ M + +L+LDEPTNHL V L LI + ++VSH+ F + + + +I+
Sbjct: 445 ARAMLLNAKLLLLDEPTNHLSVSNVRWLIEYLINLKDVSCVIVSHDSGFLDAVCTSIIHY 504
Query: 510 E 510
E
Sbjct: 505 E 505
Score = 61.3 bits (146), Expect = 2e-08
Identities = 75/339 (22%), Positives = 130/339 (38%), Gaps = 61/339 (17%)
Query: 15 DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQH 74
++ IF++V+ ++ IG VG NG GKST + ++TG + G V R+ Y+ QH
Sbjct: 572 EKLIFDNVNAQVSLNSRIGVVGENGAGKSTLIKVLTGQMEATIGSVWKHPNMRLAYVAQH 631
Query: 75 A--------------------VLGKGKTTREALA-----EAFQYLFDIEA---------- 99
A G+ K T + ++ E + ++D +
Sbjct: 632 AFHHIEDHLDMTPNQYIQWRYASGEDKETLDVVSRKNNEEELKKMYDTKVVDGVKKILDK 691
Query: 100 -----QINDTYMKMAEMSEDE-----MNAALENVG--------ELQEELDNSDFYLIDAK 141
++ +Y + DE LE G + +E + N F + AK
Sbjct: 692 ILGRRKLKKSYEYEVQWKNDETTQWMSRERLEEYGFGKLLNDIDTKEAVANGMFKPLTAK 751
Query: 142 -VEETARGLGLTP--LLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHIL 198
VEE +GL P + LSGGQ+ K TN++D E +
Sbjct: 752 NVEEHMANVGLDPEFTTHSRIRGLSGGQKLKLVIGAALWQQPHVIVLDEPTNFVDRESLG 811
Query: 199 WLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLE 258
+ LKN+ ++ISH F+ V + V G + A + + E K + E
Sbjct: 812 AMAEALKNFGGGVVVISHSNEFVKNVCVENWAVGGGVVQITGQSAAMLDAIKLEIKKETE 871
Query: 259 SLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAK 297
+ + K+K+ K+ + +A+E+K+ K
Sbjct: 872 --YTDALGNTIKVKE---EKRELSRQEKKKRAKERKMRK 905
Score = 51.5 bits (121), Expect = 2e-05
Identities = 27/81 (33%), Positives = 48/81 (58%), Gaps = 1/81 (1%)
Query: 423 LARVGLTAK-QIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
+A VGL + SR+ LSGG++ KL + + ++++LDEPTN +D ++ + A
Sbjct: 757 MANVGLDPEFTTHSRIRGLSGGQKLKLVIGAALWQQPHVIVLDEPTNFVDRESLGAMAEA 816
Query: 482 LIEYPGTVLMVSHEPEFYEGL 502
L + G V+++SH EF + +
Sbjct: 817 LKNFGGGVVVISHSNEFVKNV 837
dbj|BAA17111| (D90903) ABC transporter [Synechocystis sp.]
Length = 289
Score = 72.2 bits (174), Expect = 1e-11
Identities = 60/197 (30%), Positives = 97/197 (48%), Gaps = 24/197 (12%)
Query: 321 SRLVFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDG- 378
S+ V ++L GY P+ INL+VE + IG NG GK+TLLK L+GLI G
Sbjct: 19 SQPVIAVENLFAGYGATPVLENINLRVEERDFLGLIGPNGGGKTTLLKVLLGLIQPQQGT 78
Query: 379 ------EVEKGNFQDIAYYEQ--EIKNPSQKTVLD----------DLWDEYPSWNQAELR 420
VE+G + + Y Q E VLD L+ Y ++A +R
Sbjct: 79 VQILGRSVEQGR-RYVGYVPQWLEFDRAFPVRVLDVVRMGRLGRGKLFRRYHQQDEAIVR 137
Query: 421 GALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR 480
L +VG+ + + LSGG++ ++ A+ + ++ IL+LDEPT ++D + +
Sbjct: 138 RCLEQVGM-GDLGDRPLGTLSGGQRQRVYIARALASQPQILLLDEPTANVDSKVQRSIYE 196
Query: 481 AL--IEYPGTVLMVSHE 495
L + T++M+SH+
Sbjct: 197 LLGELNQTMTIVMISHD 213
Score = 50.8 bits (119), Expect = 3e-05
Identities = 50/235 (21%), Positives = 92/235 (38%), Gaps = 41/235 (17%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV-- 60
++ V+NL G+G + E+++ R+ + + +G +G NG GK+T + ++ G + P +G V
Sbjct: 22 VIAVENLFAGYGATPVLENINLRVEERDFLGLIGPNGGGKTTLLKVLLGLIQPQQGTVQI 81
Query: 61 ----IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEM 116
+ + VGY+ Q + R + D+ ++M +
Sbjct: 82 LGRSVEQGRRYVGYVPQWLEFDRAFPVR---------VLDV--------VRMGRLGR--- 121
Query: 117 NAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXX 176
G+L D +A V +G+ L D+ + LSGGQR +
Sbjct: 122 -------GKLFRRYHQQD----EAIVRRCLEQVGMGDLGDRPLGTLSGGQRQRVYIARAL 170
Query: 177 XXXXXXXXXXXXTNYLD---EEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
T +D + I L L N ++ISHD+ + V +
Sbjct: 171 ASQPQILLLDEPTANVDSKVQRSIYELLGEL-NQTMTIVMISHDLGAISRYVKTV 224
emb|CAA96186| (Z71552) AdcC protein [Streptococcus pneumoniae]
Length = 234
Score = 71.8 bits (173), Expect = 1e-11
Identities = 57/194 (29%), Positives = 101/194 (51%), Gaps = 25/194 (12%)
Query: 328 KDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--EKGN 384
+DL Y+ EP+ IN V+SG+ + G NG K+TL+K+ +G++ G+V K N
Sbjct: 7 EDLSFYYDKEPVLEHINYCVDSGEFVTLTGENGAAKTTLIKASLGILQPRIGKVAISKTN 66
Query: 385 FQD----IAYYEQEIKNPS---QKTVLDDLWD-EYP--SW-------NQAELRGALARVG 427
Q IAY Q+I + + TV + + YP W ++ ++ +L VG
Sbjct: 67 TQGKKLRIAYLPQQIASFNAGFPSTVYEFVKSGRYPRKGWFRRLNAHDEEHIKASLDSVG 126
Query: 428 LTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE----LKRALI 483
+ + + R+ LSGG++ + A++ ++ ++ ILDEPT +D +K E + +
Sbjct: 127 MWEHR-DKRLGSLSGGQKQRAVIARMFASDPDVFILDEPTTGMDAGSKNEFYELMHHSAH 185
Query: 484 EYPGTVLMVSHEPE 497
+ VLM++H+PE
Sbjct: 186 HHGKAVLMITHDPE 199
dbj|BAA10382| (D64002) ABC transporter [Synechocystis sp.]
Length = 284
Score = 71.8 bits (173), Expect = 1e-11
Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 16/190 (8%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK-GNFQDIAYY 391
G P+ + + +V G+++ IG NG GK+TL L GL+ + G ++ G + +
Sbjct: 61 GGQTPVLNNLAWQVAPGERLGIIGHNGCGKTTLFLLLCGLLKASAGTIQLLGQALEAGKF 120
Query: 392 EQEI----KNPSQKTVLDDLWDEY----------PSWNQAELRGALARVGLTAKQIESRV 437
E+ +NP+ + +WD+ P+ + A G+T+ ++
Sbjct: 121 LPEVGFLFQNPTDQLFATSVWDDIAFGPQNMGLSPAQVTERVNQAAELTGITSL-LDRLP 179
Query: 438 YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPE 497
LSGGE+ + A L+ IL+ DEPT LD+ A+ +L L ++ T+L+ SH+ E
Sbjct: 180 QHLSGGEKQMVAIAGLLAMAPKILLCDEPTASLDIKARRQLINFLGQFQQTLLISSHDLE 239
Query: 498 FYEGLVSDVI 507
F + + VI
Sbjct: 240 FVLEVCNRVI 249
Score = 57.4 bits (136), Expect = 3e-07
Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 29/224 (12%)
Query: 4 LNVKNLSHGFGDRA-IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+ V+ LS +G + + ++++++ GE +G +G NG GK+T ++ G L G +
Sbjct: 51 IRVRELSFAYGGQTPVLNNLAWQVAPGERLGIIGHNGCGKTTLFLLLCGLLKASAGTI-- 108
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+LG+ + L E +LF N T A D++ +N
Sbjct: 109 ------------QLLGQALEAGKFLPEV-GFLFQ-----NPTDQLFATSVWDDIAFGPQN 150
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+G + + +V + A G+T LLD+ LSGG++
Sbjct: 151 MGLSPAQ--------VTERVNQAAELTGITSLLDRLPQHLSGGEKQMVAIAGLLAMAPKI 202
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVN 226
T LD + L N+L ++ ++ SHD+ F+ EV N
Sbjct: 203 LLCDEPTASLDIKARRQLINFLGQFQQTLLISSHDLEFVLEVCN 246
gi|2648557 (AE000966) ABC transporter, ATP-binding protein [Archaeoglobus
fulgidus]
Length = 253
Score = 71.0 bits (171), Expect = 2e-11
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 324 VFEAKDLVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-- 380
V E D+ YN + S++NL + G+ +A +G NG GKST+L+ ++GL+ G V
Sbjct: 3 VIEFYDVSFSYNSSEVLSDLNLGIGRGEFVAVLGPNGAGKSTMLRLILGLLKPTKGTVKV 62
Query: 381 -------EKGNFQDIAYY---EQEIKNPSQKTVLD----DLWDEYPSWNQAELRGALARV 426
E+ F Y +EI + TV L ++LR AL+ V
Sbjct: 63 LGYNAFDERDKFVGRVGYLPQREEILLEAPLTVSQVIKLPLLARGKKVGDSKLREALSMV 122
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
GL + LSGG+Q K+ A+ + ++ IL+LDEP N +DV ++E++ L E
Sbjct: 123 GLDGFG-DKLFSELSGGQQQKVLLARALISDPEILLLDEPFNGVDVPSQEKIVEVLAEMS 181
Query: 487 G---TVLMVSH 494
TV+ V H
Sbjct: 182 SKGKTVVAVVH 192
Score = 50.4 bits (118), Expect = 4e-05
Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 29/170 (17%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M ++ ++S + + D++ + +GE + +G NG GKST + +I G L P +G V
Sbjct: 1 MKVIEFYDVSFSYNSSEVLSDLNLGIGRGEFVAVLGPNGAGKSTMLRLILGLLKPTKGTV 60
Query: 61 IWSKKHRVGYMDQHAVLG-KGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
VLG R+ YL E + + + ++++ + + A
Sbjct: 61 --------------KVLGYNAFDERDKFVGRVGYLPQREEILLEAPLTVSQVIKLPLLAR 106
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
+ VG D+K+ E +GL DK +ELSGGQ+ K
Sbjct: 107 GKKVG--------------DSKLREALSMVGLDGFGDKLFSELSGGQQQK 142
gb|AAD07317.1| (AE000544) oligopeptide ABC transporter, ATP-binding protein (oppD)
[Helicobacter pylori 26695]
Length = 516
Score = 71.0 bits (171), Expect = 2e-11
Identities = 117/553 (21%), Positives = 213/553 (38%), Gaps = 110/553 (19%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNII---TGTLVPDEGK 59
+L +KNL+ ++++ L E + VG +G GKS+ NII P G+
Sbjct: 1 MLEIKNLNCVLNAHFSLQNINISLNPSERVAIVGESGSGKSSIANIIMRLNPRFKPHNGE 60
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
V++ T L E+ +++ + +A +++D +++
Sbjct: 61 VLFE-------------------TTNLLKESEEFMQHLRGNA------IAYIAQDPLSSL 95
Query: 120 --LENVGELQEEL-----DNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXX 171
L +G+ E N+ L+ +V + + L LD+ ELSGGQR +
Sbjct: 96 NPLHKIGKQMSEAYFLHYKNASKTLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVC 155
Query: 172 XXXXXXXXXXXXXXXXXTNYLD---EEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNI 227
T LD + IL L L +N A + ISHD+ + + +
Sbjct: 156 IAMGIINAPKLLICDEPTTALDAQIQNQILDLPKQLSAEKNIALLFISHDLKAVKRLADR 215
Query: 228 IYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQ 287
+Y + I ++ + L N E +KL + +
Sbjct: 216 VYVLKKGEIVETNL---------------TKDLFNDPKHEYSKL----------LIQASN 250
Query: 288 AKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE 347
A+ K ++E + + + +F R PS +PL + +N ++
Sbjct: 251 LPAKNLKALDETLLE-VKDFSVYYLQKRFFR-PS------------LKKPLIASVNFSLK 296
Query: 348 SGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDL 407
+ + I IG +G GKS+L L+ L +L+ EK Q + + P +K +
Sbjct: 297 AKENIGIIGESGSGKSSLALGLLKL--ALNSGEEKILGQSVGSLNSKAFKPYRKILQMVF 354
Query: 408 WDEYPSWN-----QAELRGALA--------------------RVGLTAKQIESRVYVLSG 442
D Y S N Q+ L AL V L+ + + S Y LSG
Sbjct: 355 QDPYASLNPRLSIQSILTEALRFAYPKASKEEWHHLAKLCLEEVCLSHELLNSYAYELSG 414
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG----TVLMVSHEPEF 498
GE+ ++ A+ + + I++LDEPT+ LD ++ + L++ + L +SH+ +
Sbjct: 415 GERQRVAIARAIALKPKIILLDEPTSALDKSIQKSVLELLLDLQEKQDLSYLFISHDLDV 474
Query: 499 YEGLVSDVINCEE 511
+ V+ E
Sbjct: 475 IKAFCDKVLVISE 487
gb|AAF17285.1| (AF204805) NosG [Nostoc sp. GSV224]
Length = 663
Score = 70.2 bits (169), Expect = 4e-11
Identities = 61/235 (25%), Positives = 118/235 (49%), Gaps = 26/235 (11%)
Query: 284 TSGQAKAREKKLAKME-IVETISEKPKPHFDFKFSRKPSRLVFEAKDLVI-GYNEPLSSE 341
+SG + ++LA+ +E ++++P+ K + + + L FE L Y + + +
Sbjct: 335 SSGNFSSYVERLAEFSSALEDVTKQPENVSTLKIAEE-NHLAFENVTLQTPNYEQVIVED 393
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK 401
++L V+ G+ + +G +G GKS+LL+++ GL + G + + +++ + Q
Sbjct: 394 LSLSVQPGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGRLVRPPLEEVLFLPQR-----PY 448
Query: 402 TVLDDLWDE--YPSWNQ----AELRGALARVGLTAKQIESRV----------YVLSGGEQ 445
+L L ++ YP+ ++ AEL+ L +V L + + SRV +LS GEQ
Sbjct: 449 IILGTLREQLLYPNTSRQMTDAELKEVLQQVNL--QNLLSRVDGFDTEVPWENILSIGEQ 506
Query: 446 AKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYE 500
+L FA+L+ T + ILDE T+ LD+ + L + L T + V H ++
Sbjct: 507 QRLAFARLLITHPSFTILDEATSALDLQNEGSLYQKLQSTKTTFISVGHRESLFD 561
gi|1477569 (U50335) ORF3 [Mycobacterium smegmatis]
Length = 249
Score = 70.2 bits (169), Expect = 4e-11
Identities = 51/186 (27%), Positives = 98/186 (52%), Gaps = 21/186 (11%)
Query: 328 KDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLI------PSLDGEVE 381
+ L +G+N ++++I L ++ G+ + F+G +G GKST+L++L GL+ ++DG
Sbjct: 9 QQLKLGFNGVVAADITLTIDPGEVVVFLGPSGCGKSTILRALAGLLKPMGGTATVDGAPV 68
Query: 382 KGNFQDIAYYEQEIKNPSQKTVLDDLWDEYP----SWNQAELRGA----LARVGLTAKQI 433
GN A QE +T L ++ ++P EL+ L +VGL A +
Sbjct: 69 TGNAAQCAMVFQEDALLPWRTALKNV--QFPLKLRGMRGKELKATATARLEQVGLGA-YL 125
Query: 434 ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE----YPGTV 489
+ LSGG + +++ A+ + E +++++DEP LD + E+++ L+ T+
Sbjct: 126 DHLPSQLSGGMRQRVQLARTLACEPHVMLMDEPFGALDAQTRLEMQQLLMSVWETQKMTL 185
Query: 490 LMVSHE 495
L V+H+
Sbjct: 186 LFVTHD 191
sp|Q55774|Y182_SYNY3 HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN SLL0182
>gi|1001688|dbj|BAA10424| (D64002) ABC transporter
[Synechocystis sp.]
Length = 661
Score = 69.9 bits (168), Expect = 5e-11
Identities = 50/170 (29%), Positives = 84/170 (49%), Gaps = 13/170 (7%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ---- 393
L +++L V G + +G +G GKS+LL+++ GL S G +E+ D+ + Q
Sbjct: 469 LVRDLSLAVAPGNHLLIMGPSGSGKSSLLRAIAGLWDSGQGTIERPELADLLFLPQRPYM 528
Query: 394 -------EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQA 446
++ PS +++ DD + + N+ L R G +E+ VLS GEQ
Sbjct: 529 ILGTLREQLIYPSAQSIADDDF-LLETLNKVNLPDLAERFG-GLDSLENWSSVLSLGEQQ 586
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEP 496
++ A++ + ILDE T+ LDV+ + EL AL + T + V H P
Sbjct: 587 RIALARVFINQPRYAILDEATSALDVNNEAELYHALTDLGTTFISVGHRP 636
sp|Q00564|LCNC_LACLA LACTOCOCCIN A TRANSPORT ATP-BINDING PROTEIN LCNC
>gi|282301|pir||B43943 ATP-dependent membrane
translocator homolog LcnC - Lactococcus lactis
Length = 715
Score = 69.5 bits (167), Expect = 6e-11
Identities = 58/238 (24%), Positives = 112/238 (46%), Gaps = 33/238 (13%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP 337
+KA VA + E L E E +E HF+ S + G+
Sbjct: 449 QKARVANE---RLNEVYLVPSEFEEKKTELSLSHFNLNMSDISYQY---------GFGRK 496
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN 397
+ SEI L ++ +K+ +G +G GKSTL+K L+ G + G + + +++
Sbjct: 497 VLSEIELSIKENEKLTIVGMSGSGKSTLVKLLVNFFQPTSGTITLGGIDLQQFDKHQLRR 556
Query: 398 -----PSQK-----TVLDDLW---DEYPSWNQ-------AELRGALARVGLTAK-QIESR 436
P Q ++LD+L +E S + AE+R + ++ L + ++ S
Sbjct: 557 LINYLPQQPYIFTGSILDNLLLGANENASQEEILKAVELAEIRADIEQMQLGYQTELSSD 616
Query: 437 VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSH 494
LSGG++ ++ A+ + + + ILILDE T++LD+ ++++ + L+ T++ ++H
Sbjct: 617 ASSLSGGQKQRIALARALLSPAKILILDEATSNLDMITEKKILKNLLPLDKTIIFIAH 674
Score = 43.4 bits (100), Expect = 0.005
Identities = 48/217 (22%), Positives = 86/217 (39%), Gaps = 28/217 (12%)
Query: 4 LNVKNLSHGFG-DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
LN+ ++S+ +G R + ++ + + E + VG +G GKST + ++ P G +
Sbjct: 482 LNMSDISYQYGFGRKVLSEIELSIKENEKLTIVGMSGSGKSTLVKLLVNFFQPTSGTI-- 539
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+G +D + + L YL Y+ + ++ + A EN
Sbjct: 540 ----TLGGIDLQ------QFDKHQLRRLINYL------PQQPYIFTGSILDNLLLGANEN 583
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ +E L + I A +E+ LG L D + LSGGQ+ +
Sbjct: 584 ASQ-EEILKAVELAEIRADIEQMQ--LGYQTELSSDASSLSGGQKQRIALARALLSPAKI 640
Query: 183 XXXXXXTNYLDEEHILWLKNYLKN---YENAFILISH 216
T+ LD ++ K LKN + I I+H
Sbjct: 641 LILDEATSNLD---MITEKKILKNLLPLDKTIIFIAH 674
sp|P33931|CCMA_ECOLI HEME EXPORTER PROTEIN A (CYTOCHROME C-TYPE BIOGENESIS ATP-BINDING
PROTEIN CCMA) >gi|405926 (U00008) yejW [Escherichia
coli] >gi|1788529 (AE000309) ATP binding protein of heme
exporter A [Escherichia coli]
Length = 205
Score = 69.5 bits (167), Expect = 6e-11
Identities = 52/187 (27%), Positives = 96/187 (50%), Gaps = 15/187 (8%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE--- 379
+ EA++L+ +E L S ++ + +G+ + GSNG GK+TLL+ L GL GE
Sbjct: 1 MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLW 60
Query: 380 -------VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQ 432
V Q++ + + ++ T L++L + + A+ ALA+ GL +
Sbjct: 61 QGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFE 120
Query: 433 IESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP---GTV 489
+ V LS G+Q ++ A+L T + + ILDEP +DV+ + L + + ++ G V
Sbjct: 121 -DIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIV 179
Query: 490 LMVSHEP 496
++ +H+P
Sbjct: 180 ILTTHQP 186
Score = 49.6 bits (116), Expect = 6e-05
Identities = 20/48 (41%), Positives = 31/48 (63%)
Query: 15 DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+R +F +SF L GE + G+NG GK+T + ++TG PD G+V+W
Sbjct: 13 ERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLW 60
emb|CAA22219| (AL034355) putative ABC transporter [Streptomyces coelicolor]
Length = 1172
Score = 69.1 bits (166), Expect = 8e-11
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 23/237 (9%)
Query: 287 QAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVI-GYNEPLSSEINLK 345
Q A + LA E + ++ E+P P L FE + G E + ++
Sbjct: 297 QYHAAAEGLAAAEDIFSVLERPVPASGTGPVPADHALRFEGVTVRYPGRAEAAVTNVDFT 356
Query: 346 VESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ----DIAYYEQEIKNPSQK 401
VE G+ +A +G +G GKSTLL +L+G +P G V G D+A + + Q
Sbjct: 357 VEPGETVALVGPSGAGKSTLLNALLGFVPPTGGRVRVGGADLASLDVAQWHARVAWVPQH 416
Query: 402 ------TVLDDLWDEYPSWNQAELRGALARVGL----------TAKQIESRVYVLSGGEQ 445
T+ +++ P + +R AL G TA + LS G++
Sbjct: 417 PHLYAGTIAENVRLARPDADDTAVRRALRDAGALEFVDALPEGTATVLGEDGTGLSAGQR 476
Query: 446 AKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL--IEYPGTVLMVSHEPEFYE 500
+L A+ + +L+LDEPT LD + E+ A+ + TVL+V H P E
Sbjct: 477 QRLALARAFLADRPVLLLDEPTAALDGATEAEVVDAVRRLAQGRTVLLVVHRPALLE 533
Score = 57.0 bits (135), Expect = 4e-07
Identities = 46/184 (25%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYE 392
G + + ++L +E G+++A +G +G GK+TL + L+ + S G A
Sbjct: 937 GQDRDALAGLDLTLEQGRRVAVVGPSGSGKTTLAQVLLRFLDSAAGSYTLAGVDAYALAG 996
Query: 393 QEIK----------NPSQKTVLDDLWDEYPSWNQAELRGALARVGLT--AKQIESRVYVL 440
+++ + +V ++L +AELR ALAR L A ++ + L
Sbjct: 997 DDVRRLVGLCAQDAHLFDSSVRENLLLARKDATEAELRDALARARLLEWADRLPDGLDTL 1056
Query: 441 --------SGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP--GTVL 490
SGG++ +L A+ + + +L+LDEP HLD+ + L L+ T L
Sbjct: 1057 VGEHGARLSGGQRQRLALARALLADFPVLVLDEPAEHLDLPTADALTADLLAATEGRTSL 1116
Query: 491 MVSH 494
+++H
Sbjct: 1117 LITH 1120
gi|1777934 (U55214) TroB [Treponema pallidum] >gi|3322432 (AE001201) ABC
transporter, ATP-binding protein (troB) [Treponema
pallidum]
Length = 266
Score = 69.1 bits (166), Expect = 8e-11
Identities = 56/192 (29%), Positives = 96/192 (49%), Gaps = 23/192 (11%)
Query: 326 EAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE--- 381
+ DL + Y + P+ ++++++ G A IG NG GKSTLLK++MGL+P GEV
Sbjct: 12 QVDDLTLAYRQKPVLWDVDVRIPEGVIEAIIGPNGAGKSTLLKAIMGLLPLASGEVRVFG 71
Query: 382 ---KGNFQDIAYYEQE--IKNPSQKTVLD-DLWDEYPS--W-------NQAELRGALARV 426
+ +AY Q + TV D L Y S W +A R A+ V
Sbjct: 72 RPFSKERRRVAYVPQRSAVDWDFPTTVFDVVLMGSYGSLGWILRPGKREKARAREAIEEV 131
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
G+ A ++ ++ LSGG+Q ++ A+ + ++++ +DEP +D ++ + L
Sbjct: 132 GMGA-FLDRQISELSGGQQQRVFLARALVQDADLYFMDEPFQGVDAATEQAIVTLLKTLK 190
Query: 487 G---TVLMVSHE 495
G T+L+V H+
Sbjct: 191 GRGKTLLVVHHD 202
sp|P47425|Y179_MYCGE HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MG179
>gi|1361529|pir||H64219 haemolysin secretion ATP-binding
protein hlyB homolog - Mycoplasma genitalium (SGC3)
>gi|3844775 (U39697) ABC transporter ATP-binding protein
[Mycoplasma genitalium]
Length = 274
Score = 69.1 bits (166), Expect = 8e-11
Identities = 52/190 (27%), Positives = 97/190 (50%), Gaps = 21/190 (11%)
Query: 329 DLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV----EKG 383
++ YNE PL E++ V G+ + +G NG GKST+ K L GL+ GE+ +
Sbjct: 13 NVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEIKIFGKTV 72
Query: 384 NFQDIAYYEQEI----KNPSQK----TVLDDL--WDEYPSWNQAELRGALARVGLTAKQ- 432
+F +++Y I +NP + TV DD+ E +++ +++ + V L +
Sbjct: 73 DFDNVSYLRNNIGIIFQNPDNQFIGITVEDDIAFGLENKCFSRQKIKAIIDEVTLQTQTD 132
Query: 433 --IESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP---G 487
I+ + LSGG++ ++ A ++ I+I DE T LD AK+ +K+ +++
Sbjct: 133 GFIKQEPHNLSGGQKQRVAIASVLALNPAIIIFDESTAMLDPKAKKTIKQFMVKLAKQGK 192
Query: 488 TVLMVSHEPE 497
V+ ++H+ E
Sbjct: 193 CVISITHDME 202
Score = 46.5 bits (108), Expect = 5e-04
Identities = 18/53 (33%), Positives = 33/53 (61%)
Query: 8 NLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
N++ + + + ++SF + +GE++ VG NG GKST ++TG L P G++
Sbjct: 13 NVAFSYNELPLIRELSFSVYEGEYVCIVGHNGSGKSTISKLLTGLLKPQAGEI 65
gb|AAD45529.1|AF162655_1 (AF162655) choline transporter [Streptococcus pneumoniae]
Length = 242
Score = 68.7 bits (165), Expect = 1e-10
Identities = 52/197 (26%), Positives = 99/197 (49%), Gaps = 23/197 (11%)
Query: 324 VFEAKDLVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ E K++ + Y E + ++NL++E G+ + +G +G GK+T+LK + L+ DG +
Sbjct: 1 MIEYKNVALRYTEKDVLRDVNLQIEDGEFMVLVGPSGSGKTTMLKMINRLLEPTDGNIYM 60
Query: 383 GNFQDIAYYEQEIKNPS-----------QKTVLDD--LWDEYPSWNQAEL----RGALAR 425
+ Y E+E++ + TV ++ L E W++ E+ LA+
Sbjct: 61 DGKRIKDYDERELRLSTGYVLQAIALFPNLTVAENIALIPEMKGWSKEEITKKTEELLAK 120
Query: 426 VGLTAKQIESRV-YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL----KR 480
VGL + R+ LSGGEQ ++ + M + I ++DEP + LD ++++L K
Sbjct: 121 VGLPVAEYGHRLPSELSGGEQQRVGIVRAMIGQPKIFLMDEPFSALDAISRKQLQVLTKE 180
Query: 481 ALIEYPGTVLMVSHEPE 497
E+ T + V+H+ +
Sbjct: 181 LHKEFGMTTIFVTHDTD 197
gb|AAD35568.1|AE001726_2 (AE001726) ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 235
Score = 68.7 bits (165), Expect = 1e-10
Identities = 59/212 (27%), Positives = 105/212 (48%), Gaps = 31/212 (14%)
Query: 324 VFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
+ + L + Y E + E ++L+V+ G+ ++ +G +G GK+T++K+++GLIP +G++E
Sbjct: 1 MIKVSQLTVRYGELKAVEDLSLEVQRGEILSLVGPSGCGKTTVVKAILGLIP-YEGKIE- 58
Query: 383 GNFQDIAYYEQEIKNPSQKTVLDD-------------LWDEYPSWNQAELRGALARVGLT 429
+ + QK VL D L E P N EL R GL+
Sbjct: 59 -------IFTSRLGYCPQKDVLFDWMTVYENAVLPLVLRKEQPPSNIKEL---FERFGLS 108
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE----Y 485
+ E R Y LSGG + KL + + + +L+LDEP + +D +++L+ L E
Sbjct: 109 GFE-EKRPYQLSGGMRQKLSLLRAVLSGEELLVLDEPFSSVDAYTRKKLQIWLSEIVHRM 167
Query: 486 PGTVLMVSHEPEFYEGLVSDVINCEEWTTRIL 517
TV++++H+ E L ++ + RIL
Sbjct: 168 KSTVVLITHDVEEAVFLSDRILILSDRPARIL 199
Score = 48.0 bits (112), Expect = 2e-04
Identities = 53/221 (23%), Positives = 85/221 (37%), Gaps = 48/221 (21%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV-I 61
++ V L+ +G+ ED+S + +GE + VG +G GK+T + I G L+P EGK+ I
Sbjct: 1 MIKVSQLTVRYGELKAVEDLSLEVQRGEILSLVGPSGCGKTTVVKAILG-LIPYEGKIEI 59
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
++ R+GY Q VL T E NA L
Sbjct: 60 FTS--RLGYCPQKDVLFDWMTVYE-------------------------------NAVLP 86
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
V ++ N ++E GL+ +K +LSGG R K
Sbjct: 87 LVLRKEQPPSN---------IKELFERFGLSGFEEKRPYQLSGGMRQKLSLLRAVLSGEE 137
Query: 182 XXX----XXXXTNYLDEEHILWLKNYLKNYENAFILISHDV 218
Y ++ +WL + ++ +LI+HDV
Sbjct: 138 LLVLDEPFSSVDAYTRKKLQIWLSEIVHRMKSTVVLITHDV 178
sp|P55453|Y4FO_RHISN PUTATIVE ABC TRANSPORTER ATP-BINDING PROTEIN Y4FO >gi|2182398
(AE000073) Y4fO [Rhizobium sp. NGR234]
Length = 339
Score = 68.7 bits (165), Expect = 1e-10
Identities = 54/201 (26%), Positives = 99/201 (48%), Gaps = 21/201 (10%)
Query: 317 SRKPSRLVFEAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPS 375
SR + V L +G+ + ++NL V G ++ +G +G GKS++L+++ GL+P+
Sbjct: 5 SRAMADSVLSLNKLDVGFPGMTVVRDLNLDVADGAFVSLLGPSGSGKSSVLRTIAGLLPA 64
Query: 376 LDGEVEKGNFQDIAYYEQEIKNPS---QKTVLDDLWDEYPS---------WNQAELR--- 420
L G V QDI E +N Q L + + ++AE+
Sbjct: 65 LGGRVLLEG-QDITALPPERRNVGIVFQNYALFPTMSAFENIAFALRVAKKSKAEVERRV 123
Query: 421 GALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA----KE 476
G +A + + Q++ + +SGG+Q ++ A+ + T S +L+ DEP ++LD ++
Sbjct: 124 GEVAEMAGISDQLDKKPANMSGGQQQRVAIARALVTGSRVLLFDEPLSNLDAKVRAAMRK 183
Query: 477 ELKRALIEYPGTVLMVSHEPE 497
E+KR E T + V+H+ E
Sbjct: 184 EIKRLQSELGFTAIFVTHDQE 204
gb|AAD50804.1| (AF165318) putative ABC transporter [Neisseria meningitidis]
Length = 144
Score = 68.3 bits (164), Expect = 1e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 110 EMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
E+ A L+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 24 ELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKR 81
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN+LD + I+WL+N LK +E + ++I+HD F+D + I
Sbjct: 82 VALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Score = 58.9 bits (140), Expect = 9e-08
Identities = 32/128 (25%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 390 YYEQEIKNPSQKTVLDDL------WDEYPSWN-QAELRGALARVGLTAKQIESRVYVLSG 442
+ E++N S + +L +L + W A ++ L +GL + ++ LSG
Sbjct: 20 HVSHELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENE---KIGNLSG 76
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGL 502
G++ ++ A+ + ++L+LDEPTNHLD+DA L+ L + G++++++H+ F + +
Sbjct: 77 GQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNI 136
Query: 503 VSDVINCE 510
+ ++ +
Sbjct: 137 ATRIVELD 144
gi|2707843 (AF037753) putative ABC transporter [Neisseria meningitidis]
>gi|2707849 (AF037756) putative ABC transporter
[Neisseria meningitidis] >gi|2707851 (AF037757) putative
ABC transporter [Neisseria meningitidis] >gi|2707853
(AF037758) putative ABC transporter [Neisseria
meningitidis] >gi|2707871 (AF037767) putative ABC
transporter [Neisseria meningitidis]
Length = 145
Score = 68.3 bits (164), Expect = 1e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 110 EMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
E+ A L+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 24 ELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKR 81
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN+LD + I+WL+N LK +E + ++I+HD F+D + I
Sbjct: 82 VALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Score = 58.9 bits (140), Expect = 9e-08
Identities = 32/128 (25%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 390 YYEQEIKNPSQKTVLDDL------WDEYPSWN-QAELRGALARVGLTAKQIESRVYVLSG 442
+ E++N S + +L +L + W A ++ L +GL + ++ LSG
Sbjct: 20 HVSHELENGSSEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENE---KIGNLSG 76
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGL 502
G++ ++ A+ + ++L+LDEPTNHLD+DA L+ L + G++++++H+ F + +
Sbjct: 77 GQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNI 136
Query: 503 VSDVINCE 510
+ ++ +
Sbjct: 137 ATRIVELD 144
gi|3550335 (AF085172) translation elongation factor three [Pichia pastoris]
Length = 204
Score = 67.9 bits (163), Expect = 2e-10
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 10/182 (5%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD---IAYYEQE 394
L ++ +++ ++ G NG GKSTL++++ +G+VE QD Y E +
Sbjct: 12 LLNKTQFRLKRARRYGLCGPNGAGKSTLMRAIA------NGQVEGFPSQDECRTVYVEHD 65
Query: 395 IKNPSQKT-VLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
I T +D ++ + + E+ L + I + LSGG + KL A+
Sbjct: 66 IDGSEADTSTVDFIYGDGCVGTKEEIIAKLKEFSFSDSMIAGPIQSLSGGWKMKLALARA 125
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
+ ++IL+LDEPTNHLD L L T ++VSH+ F + +V +I+ E +
Sbjct: 126 VLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITXIIVSHDSGFLDKVVQYIIHYEXSS 185
Query: 514 TR 515
R
Sbjct: 186 LR 187
Score = 51.9 bits (122), Expect = 1e-05
Identities = 53/221 (23%), Positives = 76/221 (33%), Gaps = 44/221 (19%)
Query: 10 SHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVG 69
S +G + + FRL + G G NG GKST M I V G
Sbjct: 4 SLAYGAKILLNKTQFRLKRARRYGLCGPNGAGKSTLMRAIANGQVE-------------G 50
Query: 70 YMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEE 129
+ Q R E DI+ DT + + E + +L+E
Sbjct: 51 FPSQDEC-------RTVYVE-----HDIDGSEADTSTVDFIYGDGCVGTKEEIIAKLKE- 97
Query: 130 LDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXT 189
F D+ ++ + LSGG + K T
Sbjct: 98 -----FSFSDS-------------MIAGPIQSLSGGWKMKLALARAVLRNADILLLDEPT 139
Query: 190 NYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYH 230
N+LD ++ WL NYL I++SHD F+D+VV I H
Sbjct: 140 NHLDTVNVAWLVNYLNTCGITXIIVSHDSGFLDKVVQYIIH 180
sp|P38053|SSUB_ECOLI PUTATIVE ALIPHATIC SULFONATES TRANSPORT ATP-BINDING PROTEIN SSUB
>gi|1787164 (AE000195) putative ATP-binding component of
a transport system [Escherichia coli]
>gi|4062499|dbj|BAA35685| (D90731) Hypothetical abc
transporter ATP-binding protein in pepN 3'region .
[Escherichia coli] >gi|4062501|dbj|BAA35688| (D90732)
Hypothetical abc transporter ATP-binding protein in pepN
3'region . [Escherichia coli]
>gi|4583570|emb|CAB40393.1| (AJ237695) putative
aliphatic sulfonate transport ATP-binding protein
[Escherichia coli]
Length = 255
Score = 67.9 bits (163), Expect = 2e-10
Identities = 53/182 (29%), Positives = 92/182 (50%), Gaps = 11/182 (6%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF------QDIAYYEQ 393
++++L + +GQ +A +G +G GKSTLL+ L GL G+V G +D Q
Sbjct: 28 NQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQ 87
Query: 394 EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKL 453
+ + K+V+D++ + R ALA VGL + E LSGG++ ++ A+
Sbjct: 88 DARLLPWKSVIDNVGLGLKGQWRDAARRALAAVGLENRAGEWPA-ALSGGQKQRVALARA 146
Query: 454 MNTESNILILDEPTNHLDVDAKEELKRALI----EYPGTVLMVSHEPEFYEGLVSDVINC 509
+ +L+LDEP LD + E++ ++ E+ TVL+V+H+ + V+
Sbjct: 147 LIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLI 206
Query: 510 EE 511
EE
Sbjct: 207 EE 208
sp|P52648|ZNUC_ECOLI HIGH-AFFINITY ZINC UPTAKE SYSTEM ATP-BINDING PROTEIN ZNUC
>gi|1736501|dbj|BAA15666| (D90828) Sulfate transport
ATP-binding protein CysA. [Escherichia coli] >gi|1788165
(AE000280) putative ATP-binding component of a transport
system [Escherichia coli]
Length = 251
Score = 67.9 bits (163), Expect = 2e-10
Identities = 47/164 (28%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEI-KNP 398
S+++L+++ G+ + +G NG GKSTL++ ++GL+ +G +++ I Y Q++ +
Sbjct: 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDT 80
Query: 399 SQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTES 458
+ ++ P ++ ++ AL RV I + + LSGGE ++ A+ +
Sbjct: 81 TLPLTVNRFLRLRPGTHKEDILPALKRV-QAGHLINAPMQKLSGGETQRVLLARALLNRP 139
Query: 459 NILILDEPTNHLDV-------DAKEELKRALIEYPGTVLMVSHE 495
+L+LDEPT +DV D ++L+R E VLMVSH+
Sbjct: 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRR---ELDCGVLMVSHD 180
Score = 63.6 bits (152), Expect = 4e-09
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
S+++++N+S FG R + DVS L G+ + +G NG GKST + ++ G + PDEG +
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIK 62
Query: 62 WSKKHRVGYMDQHAVL 77
+ K R+GY+ Q L
Sbjct: 63 RNGKLRIGYVPQKLYL 78
gb|AAF22113.1|AF120457_1 (AF120457) putative ABC transporter [Megasphaera elsdenii]
Length = 271
Score = 67.5 bits (162), Expect = 2e-10
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 6/157 (3%)
Query: 363 STLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSW--NQAELR 420
STLLK L G + G V G ++ Q++ + + D E+ + NQ R
Sbjct: 1 STLLKVLAGQLAPTAGTVTIGQTVRFGFFTQQLPQFDEGMRVIDYVQEHGHFVTNQFGQR 60
Query: 421 GALARVG----LTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
+ R+ T + + + LSGGE+ +L +L+ + N+L+LDEPTN LD+
Sbjct: 61 ISATRLLDQFLFTEEMQYTYIAKLSGGERRRLYLLRLLMDQPNVLLLDEPTNDLDIPTLT 120
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEEWT 513
L+R L + G VL+VSH+ F + +V + E+ T
Sbjct: 121 VLERYLDTFQGVVLVVSHDRYFLDRVVDKLFTLEKGT 157
gi|2707847 (AF037755) putative ABC transporter [Neisseria meningitidis]
>gi|2707861 (AF037762) putative ABC transporter
[Neisseria meningitidis] >gi|2707863 (AF037763) putative
ABC transporter [Neisseria meningitidis] >gi|2707865
(AF037764) putative ABC transporter [Neisseria
meningitidis]
Length = 145
Score = 67.5 bits (162), Expect = 2e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 110 EMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
E+ A L+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 24 ELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKR 81
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN+LD + I+WL+N LK +E + ++I+HD F+D + I
Sbjct: 82 VALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Score = 57.8 bits (137), Expect = 2e-07
Identities = 32/124 (25%), Positives = 69/124 (54%), Gaps = 10/124 (8%)
Query: 394 EIKNPSQKTVLDDL------WDEYPSWN-QAELRGALARVGLTAKQIESRVYVLSGGEQA 446
E++N S + +L +L + W A ++ L +GL + ++ LSGG++
Sbjct: 24 ELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENE---KIGNLSGGQKK 80
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
++ A+ + ++L+LDEPTNHLD+DA L+ L + G++++++H+ F + + + +
Sbjct: 81 RVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Query: 507 INCE 510
+ +
Sbjct: 141 VELD 144
gi|2707845 (AF037754) putative ABC transporter [Neisseria meningitidis]
>gi|2707867 (AF037765) putative ABC transporter
[Neisseria meningitidis] >gi|2707869 (AF037766) putative
ABC transporter [Neisseria meningitidis]
Length = 145
Score = 67.5 bits (162), Expect = 2e-10
Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 110 EMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
E+ A L+ + ELQ E++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 24 ELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKR 81
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN+LD + I+WL+N LK +E + ++I+HD F+D + I
Sbjct: 82 VALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Score = 57.8 bits (137), Expect = 2e-07
Identities = 32/124 (25%), Positives = 69/124 (54%), Gaps = 10/124 (8%)
Query: 394 EIKNPSQKTVLDDL------WDEYPSWN-QAELRGALARVGLTAKQIESRVYVLSGGEQA 446
E++N S + +L +L + W A ++ L +GL + ++ LSGG++
Sbjct: 24 ELENGSGEALLKELNELQLEIEAKDGWKLDAAVKQTLGELGLPENE---KIGNLSGGQKK 80
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
++ A+ + ++L+LDEPTNHLD+DA L+ L + G++++++H+ F + + + +
Sbjct: 81 RVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Query: 507 INCE 510
+ +
Sbjct: 141 VELD 144
gb|AAD49728.1|AF167577_6 (AF167577) cobalt transport ATP-binding protein homolog
[Actinobacillus pleuropneumoniae]
Length = 209
Score = 67.1 bits (161), Expect = 3e-10
Identities = 61/206 (29%), Positives = 96/206 (45%), Gaps = 25/206 (12%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-- 380
+ ++L I N+ P+ ++ +E+ Q + G G GKSTLL SL+G +P GE+
Sbjct: 3 ILTVRNLTICRNQQPIIENLSFTLEAQQCLFLQGEIGAGKSTLLLSLLGFVPIQSGEISL 62
Query: 381 -------EK-----GNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGL 428
EK G + + E + TVLDD+ + NQ R + L
Sbjct: 63 FGKRCKIEKDFVPFGGTIGLCFQNAE-DHLFGPTVLDDV--AFGVLNQGYTRAEAYHIAL 119
Query: 429 TA-KQI------ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
T +QI + V +LSGGE+ A ++ + +L+LDEPTN LD E+L
Sbjct: 120 TQLEQIGIAHLKDRPVNLLSGGEKNFTALAGVLAMQPKMLLLDEPTNGLDAKNCEKLTAL 179
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVI 507
L + +L+ SH+ F L +D +
Sbjct: 180 LKQLKLPMLIASHDQTFCRTLATDTL 205
gb|AAD35314.1|AE001707_1 (AE001707) ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 266
Score = 67.1 bits (161), Expect = 3e-10
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-----EKGNFQDIAYYEQEIK 396
++L + G+ + G+ G GKSTLL+ + GLI G+V K ++ +
Sbjct: 26 VSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQ 85
Query: 397 NPSQKTVLDDLWDE--------YPSWNQAEL-RGALARVGLTAKQIESRV-YVLSGGEQA 446
P + + ++DE YP + L + A+ VGL + RV + LSGGE+
Sbjct: 86 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKR 145
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP---GTVLMVSHEPEFYEGLV 503
++ A ++ E +ILILDEP LD + K +L R + ++ TV+++SH+ E V
Sbjct: 146 RVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV 205
Query: 504 SDVINCEE 511
V+ E+
Sbjct: 206 DRVVVLEK 213
Score = 47.6 bits (111), Expect = 2e-04
Identities = 59/236 (25%), Positives = 90/236 (38%), Gaps = 38/236 (16%)
Query: 4 LNVKNLSHGFG-----DRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG 58
+ V N+SH F ++ E+VS + +GE + G G GKST + I+ G + P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 59 KVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNA 118
V++ + + GY R + AFQY D AE DE+
Sbjct: 63 DVLYDGERKKGY-----------EIRRNIGIAFQYPED---------QFFAERVFDEVAF 102
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
A++N D L+ +E GL D+ LSGG++ +
Sbjct: 103 AVKNFYP-----DRDPVPLVKKAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVH 155
Query: 179 XXXXXXXXXXTNYLDEE---HILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHV 231
LD E +L + K ILISHD+ + V+N + V
Sbjct: 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI---ETVINHVDRV 208
pir||B49454 transporter ATP-binding cassette homolog SurB - Escherichia coli
>gi|413849 (L25859) also called cydC in [5] and mdrH in
[4] [Escherichia coli] >gi|739461|prf||2003283B surB
protein [Escherichia coli]
Length = 573
Score = 67.1 bits (161), Expect = 3e-10
Identities = 63/221 (28%), Positives = 98/221 (43%), Gaps = 25/221 (11%)
Query: 298 MEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSE---INLKVESGQKIAF 354
+ I + +KP+ F +R R+ +D+ Y E I+L+V +G+ IA
Sbjct: 312 VRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAI 371
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEV-----------EKGNFQDIAYYEQEIKNPSQKTV 403
+G G GKSTLL+ L GE+ E Q I+ Q + S T+
Sbjct: 372 LGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSA-TL 430
Query: 404 LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYV--------LSGGEQAKLRFAKLMN 455
D+L P + L L RVGL ++ + LSGGE +L A+ +
Sbjct: 431 RDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGEPGRLAIARALL 490
Query: 456 TESNILILDEPTNHLDVDAKEELKRALIEY--PGTVLMVSH 494
++ +++LDEPT LD + ++ L E TVLMV+H
Sbjct: 491 HDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTH 531
gi|2826445 (U67606) methyl coenzyme M reductase system, component A2-like
[Methanococcus jannaschii]
Length = 555
Score = 66.7 bits (160), Expect = 4e-10
Identities = 68/263 (25%), Positives = 112/263 (41%), Gaps = 42/263 (15%)
Query: 2 SILNVKNLS------HGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVP 55
+I+ V+N+S HG G+ +VSF + +GE + +G +G GK+ M ++ G +P
Sbjct: 253 AIIQVRNVSKRYYVVHG-GETLNLRNVSFDVKEGEILSIIGPSGVGKTVIMRLMAGLELP 311
Query: 56 DEGKVI----------WSK---KHRVGYMDQHAVLGKGKTTREAL--------------A 88
DEGK+I W + + R+G M Q L +T L A
Sbjct: 312 DEGKIIVDGIDITNYGWERIELRKRIGIMHQEFSLPYYQTVENLLKYRLGLKGEKAIAHA 371
Query: 89 EAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF--YLIDAKVEETA 146
+A + +I D ++ ++ E E + L+ +G L E++ F + + EE
Sbjct: 372 KAKAEELGLSPKIVDALYQLIDVPESERISKLQKMG-LTEDIIYKLFPPVVESFEPEEIL 430
Query: 147 RGLGL-TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLK 205
L L +L K V ELSGGQ+ + LD + + NYLK
Sbjct: 431 EALDLGKDILKKKVIELSGGQKVRVAMALQLITKPKILFLDEPFGDLDPITLRDVANYLK 490
Query: 206 ----NYENAFILISHDVPFMDEV 224
+ +L+SH V F+ E+
Sbjct: 491 IINERFGTTIVLVSHCVEFIKEI 513
Score = 61.7 bits (147), Expect = 1e-08
Identities = 54/203 (26%), Positives = 96/203 (46%), Gaps = 38/203 (18%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE----KGNFQDI-------- 388
+++ + + G+ + +G +G GKSTL++ L G + +GEVE K NF++I
Sbjct: 21 KVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEVEILGRKDNFKEITAIHLQRN 80
Query: 389 -AYYEQEI------------KNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIES 435
A + + + N ++ L++ W+EY + L VGL K+ ++
Sbjct: 81 FALWAEPVINNIIRKLYAIRNNADEQLPLEEEWEEY----EKTAIEILKLVGLEHKK-DA 135
Query: 436 RVYVLSGGEQAKL----RFAKLMNTESNILILDEPTNHLDVDAKEEL----KRALIEYPG 487
+LSGGE+ +L + AK+ +L+LDEP +K++L K +
Sbjct: 136 FANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLLDVIKNIRDKLGI 195
Query: 488 TVLMVSHEPEFYEGLVSDVINCE 510
TV++ SH PE + L +I E
Sbjct: 196 TVIITSHLPEIHRYLCDRLILLE 218
Score = 56.6 bits (134), Expect = 5e-07
Identities = 53/171 (30%), Positives = 80/171 (45%), Gaps = 26/171 (15%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M + VKNL+ +GD + VSF KGE +G VG +G GKST + I+ G+L DEG+V
Sbjct: 1 MITVKVKNLTKKYGDFKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEV 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQ--INDTYMKMAEMSEDEMNA 118
+LG+ +E A Q F + A+ IN+ K+ + N
Sbjct: 61 --------------EILGRKDNFKEITAIHLQRNFALWAEPVINNIIRKLYAI----RNN 102
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
A E + L+EE + + I E + +GL D LSGG++ +
Sbjct: 103 ADEQL-PLEEEWEEYEKTAI-----EILKLVGLEHKKDAFANILSGGEKQR 147
pir||D64507 methyl coenzyme M reductase system, component A2 homolog -
Methanococcus jannaschii
Length = 558
Score = 66.7 bits (160), Expect = 4e-10
Identities = 68/263 (25%), Positives = 112/263 (41%), Gaps = 42/263 (15%)
Query: 2 SILNVKNLS------HGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVP 55
+I+ V+N+S HG G+ +VSF + +GE + +G +G GK+ M ++ G +P
Sbjct: 256 AIIQVRNVSKRYYVVHG-GETLNLRNVSFDVKEGEILSIIGPSGVGKTVIMRLMAGLELP 314
Query: 56 DEGKVI----------WSK---KHRVGYMDQHAVLGKGKTTREAL--------------A 88
DEGK+I W + + R+G M Q L +T L A
Sbjct: 315 DEGKIIVDGIDITNYGWERIELRKRIGIMHQEFSLPYYQTVENLLKYRLGLKGEKAIAHA 374
Query: 89 EAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF--YLIDAKVEETA 146
+A + +I D ++ ++ E E + L+ +G L E++ F + + EE
Sbjct: 375 KAKAEELGLSPKIVDALYQLIDVPESERISKLQKMG-LTEDIIYKLFPPVVESFEPEEIL 433
Query: 147 RGLGL-TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLK 205
L L +L K V ELSGGQ+ + LD + + NYLK
Sbjct: 434 EALDLGKDILKKKVIELSGGQKVRVAMALQLITKPKILFLDEPFGDLDPITLRDVANYLK 493
Query: 206 ----NYENAFILISHDVPFMDEV 224
+ +L+SH V F+ E+
Sbjct: 494 IINERFGTTIVLVSHCVEFIKEI 516
Score = 61.7 bits (147), Expect = 1e-08
Identities = 54/203 (26%), Positives = 96/203 (46%), Gaps = 38/203 (18%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE----KGNFQDI-------- 388
+++ + + G+ + +G +G GKSTL++ L G + +GEVE K NF++I
Sbjct: 24 KVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEVEILGRKDNFKEITAIHLQRN 83
Query: 389 -AYYEQEI------------KNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIES 435
A + + + N ++ L++ W+EY + L VGL K+ ++
Sbjct: 84 FALWAEPVINNIIRKLYAIRNNADEQLPLEEEWEEY----EKTAIEILKLVGLEHKK-DA 138
Query: 436 RVYVLSGGEQAKL----RFAKLMNTESNILILDEPTNHLDVDAKEEL----KRALIEYPG 487
+LSGGE+ +L + AK+ +L+LDEP +K++L K +
Sbjct: 139 FANILSGGEKQRLILGRQIAKIYEKGEGVLLLDEPATMACPASKQKLLDVIKNIRDKLGI 198
Query: 488 TVLMVSHEPEFYEGLVSDVINCE 510
TV++ SH PE + L +I E
Sbjct: 199 TVIITSHLPEIHRYLCDRLILLE 221
Score = 56.6 bits (134), Expect = 5e-07
Identities = 53/171 (30%), Positives = 80/171 (45%), Gaps = 26/171 (15%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M + VKNL+ +GD + VSF KGE +G VG +G GKST + I+ G+L DEG+V
Sbjct: 4 MITVKVKNLTKKYGDFKALDKVSFEAKKGEILGIVGKSGAGKSTLIRILRGSLDYDEGEV 63
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQ--INDTYMKMAEMSEDEMNA 118
+LG+ +E A Q F + A+ IN+ K+ + N
Sbjct: 64 --------------EILGRKDNFKEITAIHLQRNFALWAEPVINNIIRKLYAI----RNN 105
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
A E + L+EE + + I E + +GL D LSGG++ +
Sbjct: 106 ADEQL-PLEEEWEEYEKTAI-----EILKLVGLEHKKDAFANILSGGEKQR 150
emb|CAB49295.1| (AJ248284) ABC transporter, ATP-binding protein [Pyrococcus abyssi]
Length = 280
Score = 66.3 bits (159), Expect = 6e-10
Identities = 61/187 (32%), Positives = 94/187 (49%), Gaps = 32/187 (17%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP-SLDGEVEKGNFQD--------IAYY 391
++NL V+ G+ + IG +G GKST +L GLIP S++GE E F D +A
Sbjct: 23 DVNLNVKKGEFLGIIGPSGSGKSTFCLTLNGLIPHSINGEFEGNVFVDGLNTREHSVAEL 82
Query: 392 EQEI----KNPSQK----TVLDDLW--------DEYPSWNQAELRGALARVGLTAKQIES 435
+ +NP + TVL+++ + W + +R AL V L K+ E
Sbjct: 83 STRVGLVFQNPDSQLFNMTVLEEVAFALENLGVEREEMWRR--IRWALKLVKLWDKREEF 140
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE---LKRAL-IEYPGTVLM 491
LSGGE+ +L A ++ + +L+LDEPT+ LD +EE L R L E T+++
Sbjct: 141 PPN-LSGGEKQRLAIASVLVMKPKVLVLDEPTSQLDPLGREEVLSLVRLLNKEEKITIIL 199
Query: 492 VSHEPEF 498
V H +F
Sbjct: 200 VEHNTDF 206
Score = 53.5 bits (126), Expect = 4e-06
Identities = 73/313 (23%), Positives = 122/313 (38%), Gaps = 41/313 (13%)
Query: 1 MSILNVKNLSHGFGDRAIFE--DVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG 58
M+I+ V+N+S +G+ + DV+ + KGE +G +G +G GKSTF + G L+P
Sbjct: 1 MNIIEVENVSFKYGNSKAYSLRDVNLNVKKGEFLGIIGPSGSGKSTFCLTLNG-LIP--- 56
Query: 59 KVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNA 118
H + + V G TRE + Q D+ + + E E+
Sbjct: 57 -------HSINGEFEGNVFVDGLNTREHSVAELSTRVGLVFQNPDSQLFNMTVLE-EVAF 108
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
ALEN+G +EE+ ++ + + L ++ LSGG++ +
Sbjct: 109 ALENLGVEREEMWR--------RIRWALKLVKLWDKREEFPPNLSGGEKQRLAIASVLVM 160
Query: 179 XXXXXXXXXXTNYLD---EEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNIIYHVHGL 234
T+ LD E +L L L E IL+ H+ F+ E H
Sbjct: 161 KPKVLVLDEPTSQLDPLGREEVLSLVRLLNKEEKITIILVEHNTDFLLE--------HAD 212
Query: 235 GITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKK 294
I + G E EE +E L + ++K KK + R
Sbjct: 213 RIVVFDGGRVVMEGKPEEVFENVEFLERIGIRIPTRVKIGYELKKRGI-------TRRAV 265
Query: 295 LAKMEIVETISEK 307
L+ EI+ I+++
Sbjct: 266 LSYEEIIAEIAKQ 278
gi|3850209 (AF043280) ABC transporter [Streptococcus salivarius]
Length = 698
Score = 66.3 bits (159), Expect = 6e-10
Identities = 56/225 (24%), Positives = 99/225 (43%), Gaps = 23/225 (10%)
Query: 287 QAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKV 346
QAK +L ++ +V+ + F FK +L + Y + S+I+L +
Sbjct: 448 QAKVANNRLQEVYVVDKEEKGKLKEFSFK------QLALKGVSHRFSYQQETLSKIDLTI 501
Query: 347 ESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-------KGNFQDIAYYEQEIKNPS 399
G+KIA +G +G GK+TL K L G G V + + Y +
Sbjct: 502 HKGEKIALMGKSGSGKTTLAKMLSGYYTKSSGHVTLDKDAIGHAELRQMVTYVPQQTYVF 561
Query: 400 QKTVLDDLW-------DE---YPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLR 449
T+L++L DE QA++ + ++ L + S LSGG++ +L
Sbjct: 562 TGTILENLLLGFEGEVDEKKLLKVCQQADILEDIQKMPLGFQTQVSEDGGLSGGQKQRLA 621
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSH 494
A+ + ++ ILI DE T+ LD D + + L + T++ ++H
Sbjct: 622 IARALLSKQPILIFDEATSGLDSDTESRVMANLAKIKRTMIFIAH 666
gi|3779192 (U78968) ATPase protein DppE [Streptococcus pyogenes]
Length = 208
Score = 66.3 bits (159), Expect = 6e-10
Identities = 55/207 (26%), Positives = 98/207 (46%), Gaps = 16/207 (7%)
Query: 323 LVFEAKDLVIGYNEP--LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE- 379
+ EAK L + + L EI+L+V SGQ + G +G GK++L + L G + GE
Sbjct: 1 MTLEAKKLGFYHKKDQWLFKEIDLEVASGQILGIFGQSGCGKTSLSRVLAGFLQPKSGEV 60
Query: 380 -VEKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQA-----ELRGALARVGLTAKQI 433
V+ + + A+ ++ + ++ LW S +A +LR A G+ K +
Sbjct: 61 LVDGSHLPNKAFRPVQVIQQHPEQTMNPLWPMKKSLEEAYYPSQDLRDAF---GIQEKWL 117
Query: 434 ESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGT----V 489
+ R LSGGE + + ++ E+ LI DE T LD + + ++L+E +
Sbjct: 118 KRRPSELSGGELQRFSIVRSLHPETKYLIADEMTTMLDSITQASVWKSLLEIVKDRNLGL 177
Query: 490 LMVSHEPEFYEGLVSDVINCEEWTTRI 516
+++SH+ + E L EE T++
Sbjct: 178 IIISHDFDMLEKLCDACYMIEENRTQL 204
gi|3335345 (AC004512) Contains similarity to ABC transporter gb|1651790 from
Synechocystis sp. gb|D90900. [Arabidopsis thaliana]
Length = 364
Score = 66.3 bits (159), Expect = 6e-10
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 23/167 (13%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ +++ FG++ I + VSF++ GE +G +G +G GKST + I+ G L PD+G+V
Sbjct: 84 LIECRDVYKSFGEKHILKGVSFKIRHGEAVGVIGPSGTGKSTILKIMAGLLAPDKGEVYI 143
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
K R G + + G R L LFD + EN
Sbjct: 144 RGKKRAGLISDEEISG----LRIGLVFQSAALFD-------------------SLSVREN 180
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
VG L E I V +T +GL + ++ +ELSGG + +
Sbjct: 181 VGFLLYERSKMSENQISELVTQTLAAVGLKGVENRLPSELSGGMKKR 227
gi|2707857 (AF037760) putative ABC transporter [Neisseria meningitidis]
>gi|2707859 (AF037761) putative ABC transporter
[Neisseria meningitidis]
Length = 145
Score = 66.3 bits (159), Expect = 6e-10
Identities = 40/144 (27%), Positives = 73/144 (49%), Gaps = 5/144 (3%)
Query: 85 EALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEE 144
+ +AE + D+ + + + S+D + L+ + ELQ E++ D + +DA V++
Sbjct: 2 DTVAEGLGEIRDLLRRYHHVSHDLEHNSDDVL---LKELNELQLEIEAKDGWKLDAAVKQ 58
Query: 145 TARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYL 204
T LGL ++ + LSGGQ+ + TN+LD + I+WL+N L
Sbjct: 59 TLGELGLPE--NEKIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLL 116
Query: 205 KNYENAFILISHDVPFMDEVVNII 228
K +E + ++I+HD F+D + I
Sbjct: 117 KAFEGSLVVITHDRRFLDNIATRI 140
Score = 57.0 bits (135), Expect = 4e-07
Identities = 26/94 (27%), Positives = 57/94 (59%), Gaps = 3/94 (3%)
Query: 417 AELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
A ++ L +GL + ++ LSGG++ ++ A+ + ++L+LDEPTNHLD+DA
Sbjct: 54 AAVKQTLGELGLPENE---KIGNLSGGQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAII 110
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
L+ L + G++++++H+ F + + + ++ +
Sbjct: 111 WLENLLKAFEGSLVVITHDRRFLDNIATRIVELD 144
sp|P23886|CYDC_ECOLI TRANSPORT ATP-BINDING PROTEIN CYDC >gi|625731|pir||B36888 probable
transport protein mdrH - Escherichia coli >gi|145165
(L10383) putative [Escherichia coli]
>gi|1651408|dbj|BAA35611| (D90726) Probable transport
protein mdrH [Escherichia coli] >gi|1787112 (AE000190)
ATP-binding component of cytochrome-related transport
[Escherichia coli]
Length = 573
Score = 66.3 bits (159), Expect = 6e-10
Identities = 63/221 (28%), Positives = 98/221 (43%), Gaps = 25/221 (11%)
Query: 298 MEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSE---INLKVESGQKIAF 354
+ I + +KP+ F +R R+ +D+ Y E I+L+V +G+ IA
Sbjct: 312 VRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAI 371
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEV-----------EKGNFQDIAYYEQEIKNPSQKTV 403
+G G GKSTLL+ L GE+ E Q I+ Q + S T+
Sbjct: 372 LGRTGCGKSTLLQQLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSA-TL 430
Query: 404 LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYV--------LSGGEQAKLRFAKLMN 455
D+L P + L L RVGL ++ + LSGGE +L A+ +
Sbjct: 431 RDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALL 490
Query: 456 TESNILILDEPTNHLDVDAKEELKRALIEY--PGTVLMVSH 494
++ +++LDEPT LD + ++ L E TVLMV+H
Sbjct: 491 HDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTH 531
gi|2707855 (AF037759) putative ABC transporter [Neisseria meningitidis]
Length = 145
Score = 66.0 bits (158), Expect = 7e-10
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 110 EMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
E+ A L+ + ELQ ++ D + +DA V++T LGL ++ + LSGGQ+ +
Sbjct: 24 ELENGSSEALLKELNELQLAIEAKDGWKLDAAVKQTLGELGLPE--NEKIGNLSGGQKKR 81
Query: 170 XXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
TN+LD + I+WL+N LK +E + ++I+HD F+D + I
Sbjct: 82 VALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNIATRI 140
Score = 58.9 bits (140), Expect = 9e-08
Identities = 32/128 (25%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 390 YYEQEIKNPSQKTVLDDL------WDEYPSWN-QAELRGALARVGLTAKQIESRVYVLSG 442
+ E++N S + +L +L + W A ++ L +GL + ++ LSG
Sbjct: 20 HVSHELENGSSEALLKELNELQLAIEAKDGWKLDAAVKQTLGELGLPENE---KIGNLSG 76
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGL 502
G++ ++ A+ + ++L+LDEPTNHLD+DA L+ L + G++++++H+ F + +
Sbjct: 77 GQKKRVALAQAWVQKPDVLLLDEPTNHLDIDAIIWLENLLKAFEGSLVVITHDRRFLDNI 136
Query: 503 VSDVINCE 510
+ ++ +
Sbjct: 137 ATRIVELD 144
emb|CAA91229| (Z56283) orf1 [Lactobacillus helveticus]
Length = 444
Score = 66.0 bits (158), Expect = 7e-10
Identities = 56/201 (27%), Positives = 101/201 (49%), Gaps = 21/201 (10%)
Query: 314 FKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLI 373
+ F+ VFE I N L + LK+ G+ GSNG+GK++L K++ +I
Sbjct: 222 YSFALPTGTPVFELNKTQIKQNRLLLKQNKLKIY-GKTTLITGSNGVGKTSLFKAMTKMI 280
Query: 374 PS------LDGEVEKGNFQ----DIAYYEQEIKNPSQK-TVLDDLW----DEYPSWNQAE 418
P LD E+ K ++ IA + Q+ + TV D++ D + A+
Sbjct: 281 PYKGNFTYLDNEISKIKYRKYLSQIAQFFQKASDQFLTVTVKDEIELSKKDRNNFFTDAK 340
Query: 419 LRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
+ L ++ L + ++ VY LSGG+Q KL+ ++ T+ N+L++DEP + LD ++ + +
Sbjct: 341 IDEWLEKLQLK-QHLDQVVYSLSGGQQKKLQILLMLMTKHNVLLIDEPLSGLDHESVDLV 399
Query: 479 KRALIE----YPGTVLMVSHE 495
+ + E T L++SH+
Sbjct: 400 LQLMQECQEKLQQTFLIISHQ 420
Score = 54.7 bits (129), Expect = 2e-06
Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPS----------LDGEVEKGNF 385
EPL +++N+ + G + IG G GKSTLLK + GL P L G+ F
Sbjct: 10 EPLINQLNMNIAPGFNL-LIGPTGCGKSTLLKIIAGLYPKYAGKLTGKIDLHGQKAAMMF 68
Query: 386 QDIAYYEQEIKNPSQKTV--LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGG 443
Q+ A + + P ++ + L++L + ++ ++ A+ + A ++ ++ LSGG
Sbjct: 69 QNAAE-QFTMTTPREEIIFALENLQIKAKDYD-LHIKKAVEFTKI-ADLLDQKINTLSGG 125
Query: 444 EQAKLRFAKLMNTESNILILDEPTNHLDVDAKE---ELKRALIEYPGTVLMVSHEPEFYE 500
+Q + A L+ + ++ +LDEP D + + E +L E T+++ H + YE
Sbjct: 126 QQQHVALAVLIAMDVDVFLLDEPFASCDPNTRHFLIEKLASLAETGRTIILSDHVLDDYE 185
Query: 501 GLVSDVINCEEWTTRIL 517
+ + E T + L
Sbjct: 186 KICDHLYQFEGKTVKEL 202
gi|4154751 (AE001461) ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 516
Score = 65.6 bits (157), Expect = 9e-10
Identities = 113/555 (20%), Positives = 209/555 (37%), Gaps = 114/555 (20%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNII---TGTLVPDEGK 59
+L +KNL+ ++++ L E + VG +G GKS+ N++ P G+
Sbjct: 1 MLEIKNLNCVLNSHFSLQNINISLSYSERVAIVGESGSGKSSIANLVMRLNPRFKPHNGE 60
Query: 60 VIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
+++ T L E+ ++ + I +A +++D +++
Sbjct: 61 ILFE-------------------TTNLLKESEAFMQHLRGNI------IAYIAQDPLSSL 95
Query: 120 --LENVGELQEEL-----DNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQRTKXX 171
L +G+ E N+ L+ +V + + L LD+ ELSGGQR +
Sbjct: 96 NPLHKIGKQMSEAYFLHHKNASQVLLKEQVLNAMKQVQLDEKFLDRYPYELSGGQRQRVC 155
Query: 172 XXXXXXXXXXXXXXXXXTNYLD---EEHILWLKNYLKNYEN-AFILISHDVPFMDEVVNI 227
T LD + IL L L +N A + ISHD+ + + +
Sbjct: 156 IAMGIINAPKLLICDEPTTALDAQIQNQILDLLKQLSVEKNIALLFISHDLKAVKRLADR 215
Query: 228 IYHVHGLGITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQ 287
+Y + I ++ + L N E +KL + +
Sbjct: 216 VYVLKKGEIVETNL---------------TKELFNDPKHEYSKL----------LIQASN 250
Query: 288 AKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVE 347
A+ K ++E + + + +F R PS +PL + ++ ++
Sbjct: 251 LPAKNLKALDETLLE-VKDFSVYYLQKRFFR-PS------------LKKPLIASVDFSLK 296
Query: 348 SGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQKTVLDDL 407
+ + I IG +G GKS+L L+ L +L+ EK Q + + P +K +
Sbjct: 297 AKENIGIIGESGSGKSSLALGLLKL--ALNSGEEKILGQSVGLLNSKAFKPYRKILQMVF 354
Query: 408 WDEYPSWNQ---------------------------AELRGALARVGLTAKQIESRVYVL 440
D Y S N AEL L V L + + Y L
Sbjct: 355 QDPYASLNPRLSIQSILIEALRFAYPKASQQEWHHLAEL--CLEEVCLNPELLNFYAYEL 412
Query: 441 SGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG----TVLMVSHEP 496
SGGE+ ++ A+ + + I++LDEPT+ LD ++ + L+ + L +SH+
Sbjct: 413 SGGERQRVAIARAIALKPRIILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDL 472
Query: 497 EFYEGLVSDVINCEE 511
+ + V+ E
Sbjct: 473 DVIKAFCDRVLVVSE 487
emb|CAA07722| (AJ007906) FhuC [Rhizobium leguminosarum]
Length = 268
Score = 65.6 bits (157), Expect = 9e-10
Identities = 63/207 (30%), Positives = 95/207 (45%), Gaps = 35/207 (16%)
Query: 318 RKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLD 377
R V E L+I NE L +++LK +G+ +A +G NG GKS+LLK L +
Sbjct: 10 RTAETFVAENIGLLIEGNEILR-DVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSA 68
Query: 378 GEVEKGN-----------FQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARV 426
G + GN + +AY Q++ S+ TV + + W+ GAL R
Sbjct: 69 GSISYGNRDLRTYGERVFARSVAYLPQDVTTGSEMTVRELVGCGRYPWH-----GALGRF 123
Query: 427 ----------GLTAKQIES----RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDV 472
L A IE V LSGGE+ + A L+ ++ L+LDEPT LDV
Sbjct: 124 TKNDEGKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDV 183
Query: 473 DAKEE----LKRALIEYPGTVLMVSHE 495
+ E ++R E +V++V H+
Sbjct: 184 AHQIEVLSLVRRLAHELGSSVVIVLHD 210
Score = 45.7 bits (106), Expect = 0.001
Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 28/206 (13%)
Query: 18 IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVL 77
I DVS + GE + VG NG GKS+ + ++ LVP G + + + Y ++
Sbjct: 29 ILRDVSLKFPAGEVVALVGHNGSGKSSLLKMLARQLVPSAGSISYGNRDLRTYGER---- 84
Query: 78 GKGKTTREALAEAFQYL-FDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFY 136
A + YL D+ T ++ + AL + E
Sbjct: 85 --------VFARSVAYLPQDVTTGSEMTVRELVGCGRYPWHGALGRFTKNDE-------- 128
Query: 137 LIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEH 196
KVEE R + D+ V LSGG+R + T LD H
Sbjct: 129 ---GKVEEALRATYIEKFADRIVGTLSGGERQRAWIAMLIAQDARCLLLDEPTAALDVAH 185
Query: 197 ILWLKNYLKNYE----NAFILISHDV 218
+ + + ++ ++ +++ HD+
Sbjct: 186 QIEVLSLVRRLAHELGSSVVIVLHDI 211
dbj|BAA19286| (AB001488) PROBABLE TRANSPORT ATP BINDING PROTEIN. [Bacillus
subtilis] >gi|2632749|emb|CAB12256| (Z99106) similar to
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 308
Score = 65.6 bits (157), Expect = 9e-10
Identities = 58/202 (28%), Positives = 90/202 (43%), Gaps = 19/202 (9%)
Query: 323 LVFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
L E D IG + L +I++ V G+ I +G NG GK+TL++ ++GL+ G V
Sbjct: 6 LHIEGLDKKIGSKQILK-QISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNSGSVTI 64
Query: 383 GNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAE-------------LRGALARVGLT 429
FQ +E+ ++ + + W + L + RVGLT
Sbjct: 65 SGFQHDTEFEKAMEAVGAIVENPEFYPYLTGWENLKHFANMHKKIADERLDEVVERVGLT 124
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELK---RALIEYP 486
+ I +V S G + +L A+ + +LILDEPTN LD ++ + + L E
Sbjct: 125 S-AIHDKVKTYSLGMRQRLGIAQAILHRPKLLILDEPTNGLDPAGMKDFRDHIKELAEME 183
Query: 487 GT-VLMVSHEPEFYEGLVSDVI 507
GT VL +H E L VI
Sbjct: 184 GTAVLFATHLLREVEDLCDRVI 205
Score = 48.8 bits (114), Expect = 1e-04
Identities = 22/58 (37%), Positives = 35/58 (59%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
IL+++ L G + I + +S +++GE IG +G NG GK+T + II G L + G V
Sbjct: 5 ILHIEGLDKKIGSKQILKQISMDVMEGEIIGLLGPNGSGKTTLIRIIVGLLKQNSGSV 62
gb|AAF11948.1|AE002071_2 (AE002071) ABC transporter, ATP-binding protein, MsbA family
[Deinococcus radiodurans]
Length = 633
Score = 65.2 bits (156), Expect = 1e-09
Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 43/224 (19%)
Query: 303 TISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN--EPLSSEINLKVESGQKIAFIGSNGI 360
T++ P+P P L +D+ GY P+ ++L + GQ +A +G NG
Sbjct: 368 TLAPDPRP--------LPRELSLTLQDVSFGYRGQSPVIEHLSLTIPEGQTVAIVGENGA 419
Query: 361 GKSTLLKSLMGLIPSLDGEVEKGN----------------------FQDIAYYEQEIKNP 398
GK+TL+K L+ +G + G FQD A +E +++
Sbjct: 420 GKTTLVKLLLRFYDPSEGRILIGGAGEQTDLRDLDVNAWRRQVAAVFQDFARFEWTLRD- 478
Query: 399 SQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRV------YVLSGGEQAKLRFAK 452
L D + E G A + +++R+ LSGG+ KL A+
Sbjct: 479 --NVTLGQPEDAAKLSHAVEASGLGAALNHVDGGLDARIGQAFGGVDLSGGQWQKLATAR 536
Query: 453 LMNTESNILILDEPTNHLDVDAKEEL--KRALIEYPGTVLMVSH 494
+ E+ +LILDEPT LD +++E+ A + T L+++H
Sbjct: 537 ALYREARVLILDEPTAALDPRSEKEVFDAFAALSQGRTTLLITH 580
gi|1698421 (U40139) ComA [Streptococcus gordonii]
Length = 532
Score = 65.2 bits (156), Expect = 1e-09
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 28/237 (11%)
Query: 279 KANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPL 338
K A + E L K E E K HF + + F GY +
Sbjct: 262 KLQSARVANERLNEVYLVKSEFEEKKLIKDLSHFQ-------ADIDFRGVSYKYGYGANV 314
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKN- 397
SEI+L + +G K +F+G +G GK+TL K ++ G++ G +Q ++
Sbjct: 315 LSEIDLHIPAGSKTSFVGVSGSGKTTLAKMMVHFYAPNQGDICLGGVNLNQLDKQALRQY 374
Query: 398 ----PSQK-----TVLDDLW----------DEYPSWNQAELRGALARVGLTAK-QIESRV 437
P Q T+L++L D + AE+R + R+ L + ++ +
Sbjct: 375 INYLPQQPYVFNGTILENLLLGAREGTTQEDILRAVELAEIRSDIERMPLNYQTELSADG 434
Query: 438 YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSH 494
+SGG++ ++ A+ + T++ +LILDE T+ LD+ ++ + L+ T++ ++H
Sbjct: 435 AGISGGQRQRIALARALLTDAPVLILDEATSSLDILTEKRIIDNLMVLDKTIIFIAH 491
gi|2773332 (AF040718) ABC transporter CydC [Shigella flexneri]
Length = 573
Score = 64.8 bits (155), Expect = 2e-09
Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 25/221 (11%)
Query: 298 MEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSE---INLKVESGQKIAF 354
+ I + +KP+ F +R R+ +D+ Y E I+L+V +G+ IA
Sbjct: 312 VRISDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAI 371
Query: 355 IGSNGIGKSTLLKSLMGLIPSLDGEV-----------EKGNFQDIAYYEQEIKNPSQKTV 403
+G G GKSTLL+ L GE+ E Q I+ Q + S T+
Sbjct: 372 LGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSA-TL 430
Query: 404 LDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYV--------LSGGEQAKLRFAKLMN 455
D+L P + L L RVGL ++ + LSGGE +L A+ +
Sbjct: 431 RDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGEPGRLAIARTLL 490
Query: 456 TESNILILDEPTNHLDVDAKEELKRALIEY--PGTVLMVSH 494
++ +++LDEPT LD + ++ L + TVLMV+H
Sbjct: 491 HDAPLVLLDEPTEGLDATTESQILELLAKMMREKTVLMVTH 531
emb|CAB15283| (Z99120) similar to iron(III) dicitrate transport permease
[Bacillus subtilis]
Length = 275
Score = 64.8 bits (155), Expect = 2e-09
Identities = 61/192 (31%), Positives = 91/192 (46%), Gaps = 27/192 (14%)
Query: 330 LVIGYNEP-LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-------- 380
L +GY + + E+NL + G+ FIGSNG GKSTLL+SL L+ G V
Sbjct: 11 LSLGYGDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSVLLEGRAIA 70
Query: 381 ---EKGNFQDIAYYEQEIKNPSQKTVLDDL-WDEYPSWN-----QAELRGALARVGLTAK 431
K +++A Q P TV + YP N E A+ R L A
Sbjct: 71 KLPTKEVAKELAILPQGPSAPEGLTVHQLVKQGRYPYQNWLKQWSKEDEEAVER-ALKAT 129
Query: 432 QIES----RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY-- 485
++E V LSGG++ + A + E++I++LDEPT +LD+ + E+ L E
Sbjct: 130 KLEDMADRAVDSLSGGQRQRAWIAMTLAQETDIILLDEPTTYLDMTHQIEILDLLFELNE 189
Query: 486 --PGTVLMVSHE 495
T++MV H+
Sbjct: 190 KEDRTIVMVLHD 201
Score = 56.2 bits (133), Expect = 6e-07
Identities = 51/227 (22%), Positives = 89/227 (38%), Gaps = 36/227 (15%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MS ++ + LS G+GD I ++++ + KGE F+G+NG GKST + + + P G V
Sbjct: 3 MSAISTETLSLGYGDAVIIDELNLTIPKGEITVFIGSNGCGKSTLLRSLARLMKPRGGSV 62
Query: 61 IW-----SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDE 115
+ +K + A+L +G + E L T ++ +
Sbjct: 63 LLEGRAIAKLPTKEVAKELAILPQGPSAPEGL----------------TVHQLVKQGRYP 106
Query: 116 MNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXX 175
L+ + EE VE + L + D+ V LSGGQR +
Sbjct: 107 YQNWLKQWSKEDEE-----------AVERALKATKLEDMADRAVDSLSGGQRQRAWIAMT 155
Query: 176 XXXXXXXXXXXXXTNYLDEEHILWLKNYL----KNYENAFILISHDV 218
T YLD H + + + L + + +++ HD+
Sbjct: 156 LAQETDIILLDEPTTYLDMTHQIEILDLLFELNEKEDRTIVMVLHDL 202
sp|P45275|YG18_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1618
>gi|1075003|pir||A64133 membrane associated ATPase
(cbiO) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574464 (U32835) ABC transporter, ATP-binding
protein [Haemophilus influenzae Rd]
Length = 217
Score = 64.8 bits (155), Expect = 2e-09
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 349 GQKIAFI-GSNGIGKSTLLKSLMGLIPSLDGEVEK-----GNFQDIAYYEQEI----KNP 398
GQK F+ G G GK+TLL +L+G +P GE++ +D A + I +N
Sbjct: 38 GQKRLFVQGEIGSGKTTLLLALLGFVPVTKGEIKLFGKVCRKEKDFAPFRGTIGICFQNA 97
Query: 399 SQK----TVLDDLWDEYPSWNQAELR--------GALARVGLTAKQIESRVYVLSGGEQA 446
+ TVLDD+ + NQ R L R+G+T + + V+ LSGGE+
Sbjct: 98 DDQLFGPTVLDDI--AFGPLNQNVPREQAYHIAEQQLERLGITRLK-DRMVHTLSGGEKN 154
Query: 447 KLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
A ++ + IL+LDEPTN LD E+L L E +L+ SH F L +++
Sbjct: 155 FTALAGVLAMQPKILLLDEPTNGLDRKNTEKLTALLRELSLPILISSHHHGFINELATEI 214
Query: 507 IN 508
I+
Sbjct: 215 IS 216
dbj|BAA81540.1| (AP000064) 242aa long hypothetical high-affinity branched-chain
amino acid transport ATP-binding protein [Aeropyrum
pernix]
Length = 242
Score = 64.4 bits (154), Expect = 2e-09
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 19/172 (11%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
IL+V+++ FG + VSF + +GE +G +G NG GK+T NII+G +PD G+VI+
Sbjct: 7 ILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGRVIY 66
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDI-EAQINDTYMKMAEMSEDEMNAALE 121
G+ + +R +A FQ + + + + + A + +++ A E
Sbjct: 67 KGVDITGWPAY-------RRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARE 119
Query: 122 NVGEL--------QEELDNSDFYLIDAKVEETARGLGLTP---LLDKDVAEL 162
E +E++ D LI+ K E AR L P LLD+ A L
Sbjct: 120 RAMEAIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGL 171
gi|2983231 (AE000698) ABC transporter [Aquifex aeolicus]
Length = 232
Score = 64.4 bits (154), Expect = 2e-09
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 56/231 (24%)
Query: 1 MSILNVKNLSHGF-GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGK 59
M ++ VKNL+ + G + EDVSF + KG+ +G VG NG GKST + +I G L P G+
Sbjct: 1 MRVIEVKNLTFSYDGKHNVLEDVSFYVEKGDFLGIVGPNGAGKSTLLKLILGFLKPKSGE 60
Query: 60 V-IWSKK-------HRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEM 111
+ ++ KK RVGY+ Q R ++ AF
Sbjct: 61 IYLFGKKIEEFKDWKRVGYVPQ----------RLSVEHAF-------------------- 90
Query: 112 SEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXX 171
+ L +V E ++E+D YL++ L L +++K +LSGGQ+ +
Sbjct: 91 -PGTVKELLSSVCEDKKEID----YLVEF--------LKLKNIVNKQFTKLSGGQQQRVL 137
Query: 172 XXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYL----KNYENAFILISHDV 218
T LD I + L N++ + ++ISHD+
Sbjct: 138 LAMALSYNPELILLDEPTVGLDVHAINHFMSILLDLNMNHKKSIVMISHDI 188
Score = 62.5 bits (149), Expect = 8e-09
Identities = 49/189 (25%), Positives = 90/189 (46%), Gaps = 21/189 (11%)
Query: 324 VFEAKDLVIGYN--EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV- 380
V E K+L Y+ + +++ VE G + +G NG GKSTLLK ++G + GE+
Sbjct: 3 VIEVKNLTFSYDGKHNVLEDVSFYVEKGDFLGIVGPNGAGKSTLLKLILGFLKPKSGEIY 62
Query: 381 -------EKGNFQDIAYYEQ--EIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAK 431
E +++ + Y Q +++ TV + L + + L K
Sbjct: 63 LFGKKIEEFKDWKRVGYVPQRLSVEHAFPGTVKELLSSVCEDKKEIDYLVEF----LKLK 118
Query: 432 QIESRVYV-LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE----YP 486
I ++ + LSGG+Q ++ A ++ +++LDEPT LDV A L++ +
Sbjct: 119 NIVNKQFTKLSGGQQQRVLLAMALSYNPELILLDEPTVGLDVHAINHFMSILLDLNMNHK 178
Query: 487 GTVLMVSHE 495
+++M+SH+
Sbjct: 179 KSIVMISHD 187
dbj|BAA16749| (D90900) ABC transporter [Synechocystis sp.]
Length = 260
Score = 64.4 bits (154), Expect = 2e-09
Identities = 47/170 (27%), Positives = 74/170 (42%), Gaps = 30/170 (17%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I+ + +S FG + I +DV ++ GE +G +G +G GKST + I+ G L PD G+VI
Sbjct: 8 IIEFRGVSQSFGRKVILDDVDLKIYPGEAVGVIGPSGTGKSTILRIVAGLLTPDSGEVIV 67
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFD---IEAQINDTYMKMAEMSEDEMNAA 119
G+ Q ++ K L LFD + + T + +++ E+ A
Sbjct: 68 H-----GHRRQRSIEEGEKALGVGLVFQQSALFDSLTVAENVGFTLYRDSDLRPREIRAI 122
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
VEE +GL + D+ AELSGG R +
Sbjct: 123 ----------------------VEENLELVGLPGIGDRFPAELSGGMRKR 150
pir||B36931 hypothetical protein (sfp0 5' region) - Bacillus subtilis
>gi|304168 (L17438) homology to family of bacterial
receptor ATPases [Bacillus subtilis]
Length = 246
Score = 64.4 bits (154), Expect = 2e-09
Identities = 55/201 (27%), Positives = 105/201 (51%), Gaps = 28/201 (13%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF------- 385
G NE L +I++K+E G+ IA +G +G GK+TLL+ L L GE+ +F
Sbjct: 12 GENEILK-KIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKK 70
Query: 386 --QDIAYYEQEIKN-------PSQKTVLDDLWD---EYPSWNQAELR----GALARVGLT 429
+ I+ +I+N +T L+++ + + N+ E+R L +VGL
Sbjct: 71 VNRRISKASPKIRNGVSGVSPVPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGLK 130
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG-- 487
K ++ + LSGG+Q ++ A+ + + +++ DEPT+ LD + E+ + + +
Sbjct: 131 DK-MDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANEG 189
Query: 488 -TVLMVSHEPEFYEGLVSDVI 507
T+++V+HE +F + + +VI
Sbjct: 190 WTMVVVTHEIKFAQEVADEVI 210
Score = 54.3 bits (128), Expect = 2e-06
Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 23/234 (9%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L VK L+ FG+ I + + ++ KG+ I +G +G GK+T + + +P+ G++ +
Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
D ++ K R I ++ +S ALEN
Sbjct: 61 ---------DDFSIDFSKKVNRR-----------ISKASPKIRNGVSGVSPVPHRTALEN 100
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
V E ++ + + + + +GL +D +LSGGQ+ +
Sbjct: 101 VMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPEL 160
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYEN---AFILISHDVPFMDEVVNIIYHVHG 233
T+ LD E + + +K+ N ++++H++ F EV + + + G
Sbjct: 161 MLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDG 214
gb|AAF00956.1|AF183408_4 (AF183408) McyH [Microcystis aeruginosa]
Length = 538
Score = 64.0 bits (153), Expect = 3e-09
Identities = 51/197 (25%), Positives = 95/197 (47%), Gaps = 25/197 (12%)
Query: 334 YNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQ 393
Y + + ++L +E G+ + +G +G GKS+LL+++ GL + G +++ + + Q
Sbjct: 335 YEKVIVQHLSLSIEPGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGCLKRPPLEQFLFLPQ 394
Query: 394 EIKNPSQKTVLDDLWDE--YPSWNQ----AELRGALARVGLTAKQIESRVY--------- 438
+L L ++ YP + EL L +V L + I ++V+
Sbjct: 395 R-----PYIILGTLREQLLYPKTTREMTDGELESVLQKVNL--QNIATKVHGFDAEVPWE 447
Query: 439 -VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPE 497
+LS GEQ +L FA+L+ T +ILDE T+ LD++ ++ L + L + T + V H
Sbjct: 448 NILSLGEQQRLAFARLLVTHPRYVILDEATSALDLNNEQTLYQQLQKAQTTFISVGHRES 507
Query: 498 F--YEGLVSDVINCEEW 512
Y V +++ W
Sbjct: 508 LFKYHQWVLELLEDSSW 524
gi|1573662 (U32749) ATP-binding transport protein (cydD) [Haemophilus
influenzae Rd]
Length = 560
Score = 64.0 bits (153), Expect = 3e-09
Identities = 63/237 (26%), Positives = 108/237 (44%), Gaps = 30/237 (12%)
Query: 281 NVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNE--PL 338
+VA +G KA K+ +++T E + DF+ + + E KDL Y+E P
Sbjct: 277 HVAMNG--KAASDKI--FTLLDTPVETQQSAVDFEAK---NNVQVEIKDLHFSYSEEKPA 329
Query: 339 SSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-----EKGNFQDIAYYEQ 393
+ +NL + Q F+G +G GKSTL+ LMG + GE+ N ++Y++
Sbjct: 330 ITGLNLSILPNQLSVFVGKSGCGKSTLVSLLMGFNKAQQGEILFNGQNALNIDRTSFYQK 389
Query: 394 EIKNPSQKTVLD------------DLWDE--YPSWNQAELRGALARVGLTAKQIESRVYV 439
V D DE Y Q L + G Q+ SR
Sbjct: 390 VSLVSHSSYVFKGTLRENMTMAKIDATDEQIYACLEQVNLAQFVRDNGGLDMQLLSRGAN 449
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY--PGTVLMVSH 494
LSGG+ +L A+ + + + I DE T+++DV+++E + + + ++ T++M+SH
Sbjct: 450 LSGGQIQRLALARALLHNAELYIFDEATSNIDVESEEIILQFIQQFKQQKTIVMISH 506
sp|P04983|RBSA_ECOLI RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|78831|pir||B26304
ribose transport protein rbsA - Escherichia coli
>gi|147513 (M13169) high affinity ribose transport
protein [Escherichia coli] >gi|1790190 (AE000452)
ATP-binding component of D-ribose high-affinity
transport system [Escherichia coli]
Length = 501
Score = 64.0 bits (153), Expect = 3e-09
Identities = 110/563 (19%), Positives = 204/563 (35%), Gaps = 125/563 (22%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
++L +K + F + + G + VG NG GKST M ++TG D G ++
Sbjct: 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLL 62
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
++ + K+++EA ++ Q+ E
Sbjct: 63 --------WLGKETTFTGPKSSQEAGIGIIHQELNLIPQLT----------------IAE 98
Query: 122 NV---GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
N+ E D+ + A+ ++ L L DK V +LS G +
Sbjct: 99 NIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSF 158
Query: 179 XXXXXXXXXXTNYLDE---EHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG 235
T+ L + E + + LK+ + ISH + + E+ + +
Sbjct: 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDV------- 211
Query: 236 ITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKL 295
VF + + FIA ++ A E L
Sbjct: 212 ------------TVFRDGQ-------------------FIAEREV-------ASLTEDSL 233
Query: 296 AKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFI 355
+M + + ++ PH D + P + + +L P ++++ + G+ +
Sbjct: 234 IEMMVGRKLEDQ-YPHLD----KAPGDIRLKVDNLC----GPGVNDVSFTLRKGEILGVS 284
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEV------------EKGNFQDIAYYEQE--------- 394
G G G++ L+K L G +P G V + G I Y ++
Sbjct: 285 GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344
Query: 395 --IKNPSQKTVLDDLWDEYPSWNQAELRGALARV----GLTAKQIESRVYVLSGGEQAKL 448
+K T L S A+ + A++ + +E + +LSGG Q K+
Sbjct: 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKV 404
Query: 449 RFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG---TVLMVSHE-PE------- 497
A+ + T +LILDEPT +DV AK+E+ + + ++ ++++VS E PE
Sbjct: 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDR 464
Query: 498 ---FYEGLVSDVINCEEWTTRIL 517
+EG +S E+ T +L
Sbjct: 465 IIVMHEGHLSGEFTREQATQEVL 487
gi|290599 (L10328) high affinity ribose transport protein [Escherichia coli]
Length = 501
Score = 64.0 bits (153), Expect = 3e-09
Identities = 110/563 (19%), Positives = 204/563 (35%), Gaps = 125/563 (22%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
++L +K + F + + G + VG NG GKST M ++TG D G ++
Sbjct: 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLL 62
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
++ + K+++EA ++ Q+ E
Sbjct: 63 --------WLGKETTFTGPKSSQEAGIGIIHQELNLIPQLT----------------IAE 98
Query: 122 NV---GELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
N+ E D+ + A+ ++ L L DK V +LS G +
Sbjct: 99 NIFLGREFVNRFGKIDWKTMYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSF 158
Query: 179 XXXXXXXXXXTNYLDE---EHILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLG 235
T+ L + E + + LK+ + ISH + + E+ + +
Sbjct: 159 ESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRMKEIFEICDDV------- 211
Query: 236 ITRYSMGYAEFERVFEEKKAQLESLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKL 295
VF + + FIA ++ A E L
Sbjct: 212 ------------TVFRDGQ-------------------FIAEREV-------ASLTEDSL 233
Query: 296 AKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSSEINLKVESGQKIAFI 355
+M + + ++ PH D + P + + +L P ++++ + G+ +
Sbjct: 234 IEMMVGRKLEDQ-YPHLD----KAPGDIRLKVDNLC----GPGVNDVSFTLRKGEILGVS 284
Query: 356 GSNGIGKSTLLKSLMGLIPSLDGEV------------EKGNFQDIAYYEQE--------- 394
G G G++ L+K L G +P G V + G I Y ++
Sbjct: 285 GLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLG 344
Query: 395 --IKNPSQKTVLDDLWDEYPSWNQAELRGALARV----GLTAKQIESRVYVLSGGEQAKL 448
+K T L S A+ + A++ + +E + +LSGG Q K+
Sbjct: 345 MSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQAIGLLSGGNQQKV 404
Query: 449 RFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG---TVLMVSHE-PE------- 497
A+ + T +LILDEPT +DV AK+E+ + + ++ ++++VS E PE
Sbjct: 405 AIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIILVSSEMPEVLGMSDR 464
Query: 498 ---FYEGLVSDVINCEEWTTRIL 517
+EG +S E+ T +L
Sbjct: 465 IIVMHEGHLSGEFTREQATQEVL 487
emb|CAB73434.1| (AL139077) putative ABC transporter ATP binding protein
[Campylobacter jejuni]
Length = 211
Score = 63.6 bits (152), Expect = 4e-09
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 37/223 (16%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M +L +NLSH F D +FE ++ L + I G++G GKST ++I++ L+P +G+V
Sbjct: 1 MELLRAENLSHSF-DYPLFEGLNLTLNTKDCIAIQGSSGCGKSTLLHILSSLLIPKKGEV 59
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQ--YLFDIEAQINDTYMKMAEMSEDEMNA 118
+ K + MD++ L K R FQ YLF + +
Sbjct: 60 FF-KGSNLYQMDENERL---KIRRYDFGIIFQTHYLF-------------------KGFS 96
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
ALEN+ EL L D +D K+ + LG+ LL + + +LSGGQ+ +
Sbjct: 97 ALENI-ELASVLSGQD---LDEKI---LKRLGINTLLHQKIGKLSGGQQQRVSIARVLCK 149
Query: 179 XXXXXXXXXXTNYLDEEH----ILWLKNYLKNYENAFILISHD 217
T LD ++ I L +Y+K + A ++HD
Sbjct: 150 KPKIIFADEATGNLDFDNAKNVIELLISYVKENDAALFFVTHD 192
Score = 55.0 bits (130), Expect = 1e-06
Identities = 49/180 (27%), Positives = 81/180 (44%), Gaps = 22/180 (12%)
Query: 324 VFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKG 383
+ A++L ++ PL +NL + + IA GS+G GKSTLL L L+ GEV
Sbjct: 3 LLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTLLHILSSLLIPKKGEV--- 59
Query: 384 NFQDIAYYEQEIKNPSQKTVLDD---------LWDEYPSWNQAELRGALARVGLTAK--- 431
F+ Y+ + +N K D L+ + + EL L+ L K
Sbjct: 60 FFKGSNLYQMD-ENERLKIRRYDFGIIFQTHYLFKGFSALENIELASVLSGQDLDEKILK 118
Query: 432 ------QIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY 485
+ ++ LSGG+Q ++ A+++ + I+ DE T +LD D + + LI Y
Sbjct: 119 RLGINTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEATGNLDFDNAKNVIELLISY 178
gb|AAC31907.1| (AF075709) ABC transporter ATP-binding subunit [Pseudomonas putida]
Length = 270
Score = 63.6 bits (152), Expect = 4e-09
Identities = 53/181 (29%), Positives = 91/181 (49%), Gaps = 13/181 (7%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF------QDIAYYEQEI 395
I+L + +GQ +A +G +G GKSTLL+ L GL GE+ G ++ Q+
Sbjct: 35 IDLHIPAGQFVAIVGRSGCGKSTLLRLLAGLDQPTAGELLAGAAPLAEAREETRLMFQDA 94
Query: 396 KNPSQKTVLDDL-WDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLM 454
+ K V+D++ W Q L AL VGL A + LSGG++ ++ A+ +
Sbjct: 95 RLLPWKKVIDNVGLGLKGDWRQRAL-DALEAVGL-ADRANEWPAALSGGQKQRVALARAL 152
Query: 455 NTESNILILDEPTNHLD----VDAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCE 510
+ +L+LDEP LD ++ ++ ++R ++ TVL+V+H+ + VI E
Sbjct: 153 IHQPRLLLLDEPLGALDALTRIEMQQLIERLWRQHGFTVLLVTHDVNEAVAVADRVILIE 212
Query: 511 E 511
+
Sbjct: 213 D 213
emb|CAB11002| (Z98271) cell division atp-binding protein [Mycobacterium leprae]
Length = 229
Score = 63.6 bits (152), Expect = 4e-09
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 26/195 (13%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF----------- 385
P +N+K++ G+ + IG +G GKST ++ L+G G+V F
Sbjct: 17 PALDNVNVKIDKGEFVFLIGPSGSGKSTFMRLLLGAETPTSGDVRVSKFHVNKLPGRHIP 76
Query: 386 ---QDIAYYEQEIKNPSQKTV-------LDDLWDEYPSWNQAELRGALARVGLTAKQIES 435
Q I Q+ + QKTV L+ + + NQ + L VGL+ K
Sbjct: 77 RLRQVIGCVFQDFRLLQQKTVYENVAFALEVIGRRSDAINQV-VPDVLETVGLSGK-ANR 134
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL--IEYPG-TVLMV 492
LSGGEQ ++ A+ +L+ DEPT +LD D +++ L I G TVLM
Sbjct: 135 LPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPDTSKDIMDLLERINRTGTTVLMA 194
Query: 493 SHEPEFYEGLVSDVI 507
+H+ + + V+
Sbjct: 195 THDHHIVDSMRQRVV 209
Score = 44.9 bits (104), Expect = 0.002
Identities = 46/212 (21%), Positives = 82/212 (37%), Gaps = 26/212 (12%)
Query: 16 RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHA 75
R ++V+ ++ KGE + +G +G GKSTFM ++ G P G V SK H +H
Sbjct: 16 RPALDNVNVKIDKGEFVFLIGPSGSGKSTFMRLLLGAETPTSGDVRVSKFHVNKLPGRHI 75
Query: 76 VLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDF 135
R+ + FQ D + + + + ALE +G +
Sbjct: 76 -----PRLRQVIGCVFQ----------DFRLLQQKTVYENVAFALEVIGRRSD------- 113
Query: 136 YLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLD-- 193
I+ V + +GL+ ++ ELSGG++ + T LD
Sbjct: 114 -AINQVVPDVLETVGLSGKANRLPDELSGGEQQRVAIARAFVNRPLVLLADEPTGNLDPD 172
Query: 194 -EEHILWLKNYLKNYENAFILISHDVPFMDEV 224
+ I+ L + ++ +HD +D +
Sbjct: 173 TSKDIMDLLERINRTGTTVLMATHDHHIVDSM 204
dbj|BAA30934.1| (AP000007) 284aa long hypothetical cobalt transport ATP-binding
protein [Pyrococcus horikoshii]
Length = 284
Score = 63.2 bits (151), Expect = 5e-09
Identities = 64/207 (30%), Positives = 99/207 (46%), Gaps = 35/207 (16%)
Query: 324 VFEAKDLVIGYN---EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP-SLDGE 379
V E +D+ Y E INL++ G+ + IG +G GKST +L GLIP S+ GE
Sbjct: 3 VIEVEDVSFRYGNSREYSLRHINLEIRKGEFLGIIGPSGSGKSTFCLTLNGLIPHSIAGE 62
Query: 380 ------VEKGNFQDIAYYEQEIK------NPSQK----TVLDDLW--------DEYPSWN 415
V+ N ++ + E K NP + TVL+++ + W
Sbjct: 63 FHGNVIVDGLNTREHSVSELSTKVGLVFQNPDSQLFNMTVLEEVAFALENLGIERDEMWR 122
Query: 416 QAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAK 475
+ +R AL V L K+ E LSGGE+ +L A ++ + +L+LDEPT+ LD +
Sbjct: 123 R--IRWALKLVRLWDKREEFPPN-LSGGEKQRLAIASVLVMKPKVLVLDEPTSQLDPLGR 179
Query: 476 EE----LKRALIEYPGTVLMVSHEPEF 498
EE +K E T+++V H +F
Sbjct: 180 EEVLGLIKLLNKEEKITIILVEHNTDF 206
Score = 45.7 bits (106), Expect = 0.001
Identities = 52/229 (22%), Positives = 94/229 (40%), Gaps = 26/229 (11%)
Query: 1 MSILNVKNLSHGFGDRAIFE--DVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG 58
M+++ V+++S +G+ + ++ + KGE +G +G +G GKSTF + G L+P
Sbjct: 1 MNVIEVEDVSFRYGNSREYSLRHINLEIRKGEFLGIIGPSGSGKSTFCLTLNG-LIP--- 56
Query: 59 KVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNA 118
H + V+ G TRE + Q D+ + + E E+
Sbjct: 57 -------HSIAGEFHGNVIVDGLNTREHSVSELSTKVGLVFQNPDSQLFNMTVLE-EVAF 108
Query: 119 ALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXX 178
ALEN+G ++E+ ++ + + L ++ LSGG++ +
Sbjct: 109 ALENLGIERDEMWR--------RIRWALKLVRLWDKREEFPPNLSGGEKQRLAIASVLVM 160
Query: 179 XXXXXXXXXXTNYLD---EEHILWLKNYLKNYEN-AFILISHDVPFMDE 223
T+ LD E +L L L E IL+ H+ F+ E
Sbjct: 161 KPKVLVLDEPTSQLDPLGREEVLGLIKLLNKEEKITIILVEHNTDFLLE 209
gi|1943947 (U90126) ABC transporter [Bos taurus]
Length = 2281
Score = 63.2 bits (151), Expect = 5e-09
Identities = 68/252 (26%), Positives = 104/252 (40%), Gaps = 37/252 (14%)
Query: 274 FIARKKANVATSGQAKAREKKLAKME-IVETIS--EKPKPHFDFKFSRK-----PSRLVF 325
F+ ++ + G + E+ L K E I E + E P+ D F R+ P V
Sbjct: 873 FLLQESYWLGGEGCSTREERALEKTEPITEEMEDPEYPEGINDCFFERELPGLVPGVCVK 932
Query: 326 EAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF 385
+ Y P +N+ Q AF+G NG GK+T L + GL+P G V G
Sbjct: 933 NLVKIFEPYGRPAVDRLNITFYESQITAFLGHNGAGKTTTLSIMTGLLPPTSGTVLVGG- 991
Query: 386 QDIAYYEQEIKN-----PSQKTVLDDL----------------WDEYPSWNQAELRGALA 424
+DI I+ P + L WDE Q E+ L
Sbjct: 992 KDIETNLDAIRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWDE----AQLEMEAMLE 1047
Query: 425 RVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE 484
GL K+ E LSGG Q KL A ++ +++LDEPT+ +D ++ + L++
Sbjct: 1048 DTGLHHKRNE-EARDLSGGVQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 485 YPG--TVLMVSH 494
Y T++M +H
Sbjct: 1107 YRSGRTIIMSTH 1118
Score = 42.6 bits (98), Expect = 0.008
Identities = 48/188 (25%), Positives = 74/188 (38%), Gaps = 18/188 (9%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---KGNFQDIA 389
G + P + + V G+ +G NG GK+T K L G G+ K +I+
Sbjct: 1947 GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTAVTSGDATVAGKSILTNIS 2006
Query: 390 YYEQEIKNPSQKTVLDD-LWDEYPSWNQAELRGALAR-----VGLTAKQIESRVY----- 438
Q + Q +DD L + A LRG A + + + +Y
Sbjct: 2007 DVHQSMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIERVTNWSIQSLGLSLYADRLA 2066
Query: 439 -VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR---ALIEYPGTVLMVSH 494
SGG + KL A + +++LDEPT +D A+ L +I V++ SH
Sbjct: 2067 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIMGIIREERAVVLTSH 2126
Query: 495 EPEFYEGL 502
E E L
Sbjct: 2127 SMEECEAL 2134
dbj|BAA17050| (D90902) ABC transporter [Synechocystis sp.]
Length = 260
Score = 63.2 bits (151), Expect = 5e-09
Identities = 49/167 (29%), Positives = 73/167 (43%), Gaps = 24/167 (14%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ ++ +S FGDR I + V L GE + +G +G GKST + II G L PD G+V+
Sbjct: 5 LIQLRGISKSFGDRQILDSVDLDLYPGEALVVIGPSGTGKSTILRIIAGLLPPDSGEVLI 64
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ R G ++ + R AL LFD EN
Sbjct: 65 KTQPRRGLVED-----DNERIRIALVFQQSALFD-------------------SLTVAEN 100
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
VG E + +I +V + +GLT + D A+LSGG R +
Sbjct: 101 VGFFLLEHSSLSREVIREQVADKLALVGLTGIEDYYPAQLSGGMRKR 147
Score = 54.3 bits (128), Expect = 2e-06
Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 33/186 (17%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV------EKGNFQD------IA 389
++L + G+ + IG +G GKST+L+ + GL+P GEV +G +D IA
Sbjct: 24 VDLDLYPGEALVVIGPSGTGKSTILRIIAGLLPPDSGEVLIKTQPRRGLVEDDNERIRIA 83
Query: 390 YYEQEIKNPSQKTVLDDLWD---EYPSWNQAELR----GALARVGLTAKQIESRVYVLSG 442
Q+ TV +++ E+ S ++ +R LA VGLT + + LSG
Sbjct: 84 LVFQQSALFDSLTVAENVGFFLLEHSSLSREVIREQVADKLALVGLTGIE-DYYPAQLSG 142
Query: 443 GEQAKLRFAKLMNTESN-------ILILDEPTNHLDVDAK---EELKRALIEYP---GTV 489
G + ++ FA+ + + + +++ DEPT LD A E+L R L + P GT
Sbjct: 143 GMRKRVSFARAIMSNPHQPEDNPEVILYDEPTAGLDPIASTVIEDLVRRLQKSPGGCGTY 202
Query: 490 LMVSHE 495
+MVSH+
Sbjct: 203 IMVSHQ 208
gi|2688485 (AE001158) ABC transporter, ATP-binding protein [Borrelia
burgdorferi]
Length = 270
Score = 62.8 bits (150), Expect = 6e-09
Identities = 51/199 (25%), Positives = 92/199 (45%), Gaps = 17/199 (8%)
Query: 323 LVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV- 380
+ EA ++ Y + + S++NL +E+ Q +G NG+GK+TLLK + GL+ L G++
Sbjct: 3 MAIEAVNVKFSYKRKEVYSDLNLNIETPQAYLLLGKNGVGKTTLLKLVSGLLEPLKGKIL 62
Query: 381 ---------EKGNFQDIAYYEQEIKNP--SQKTVLDDLWDEYPSWNQAELRGALARVGLT 429
N ++ + +E P S L YP++N+A+ + L+ L
Sbjct: 63 FNSLAXFPRNPLNLVNLFFIPEEFSLPRLSLAEYSKALSIFYPNFNEADFKKYLSDFDL- 121
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTV 489
I + S G++ K A + + L+ DEPTN LD+ +K + L +
Sbjct: 122 --DISLDLSSASFGQKKKSIIAFSLAANVSCLLFDEPTNSLDIVSKNVFRNMLSNLKDRI 179
Query: 490 LMVS-HEPEFYEGLVSDVI 507
+ ++ H G+V +I
Sbjct: 180 IFITGHNVRDLAGVVDYLI 198
dbj|BAA09005| (D50453) homologue of hypothetical protein in a rapamycin synthesis
gene cluster of Streptomyces hygroscopicus [Bacillus
subtilis] >gi|2632674|emb|CAB12181| (Z99106) similar to
ABC transporter (permease) [Bacillus subtilis]
Length = 226
Score = 62.5 bits (149), Expect = 8e-09
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 335 NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDG----------EVEKGN 384
++PL +IN+ + G+ +G++G GK+T L GL +G ++ N
Sbjct: 17 SQPLFQDINISFQKGKFYTIVGTSGTGKTTFLSLAGGLDAPKEGNILYDGKAVSKIGLTN 76
Query: 385 FQD--IAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELR------GALARVGLTAKQIESR 436
F++ ++ Q T L ++ E L +VG+ KQ +
Sbjct: 77 FRNQYVSIVFQAYNLLPYMTALQNVTTAMEITGSKEKNKESYALDMLQKVGINEKQARQK 136
Query: 437 VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEY----PGTVLMV 492
V LSGG+Q ++ + ++++++ DEPT +LD D +E+ R + V+MV
Sbjct: 137 VLTLSGGQQQRVSITRAFCCDTDLIVADEPTGNLDEDTSKEIVRLFQDLAHKEDKCVIMV 196
Query: 493 SHEPEFYEGLVSDV 506
+H+ + + VSD+
Sbjct: 197 THDEQIAK--VSDI 208
Score = 44.1 bits (102), Expect = 0.003
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 1 MSILNVKNLSHGFGDRA--IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG 58
MS+L + + + + +++ +F+D++ KG+ VG +G GK+TF+++ G P EG
Sbjct: 1 MSLLQFQQVGYWYKNKSQPLFQDINISFQKGKFYTIVGTSGTGKTTFLSLAGGLDAPKEG 60
Query: 59 KVIWSKK 65
+++ K
Sbjct: 61 NILYDGK 67
dbj|BAA11573| (D82575) elongation factor 3 [Schizosaccharomyces pombe]
Length = 299
Score = 62.5 bits (149), Expect = 8e-09
Identities = 34/90 (37%), Positives = 54/90 (59%), Gaps = 1/90 (1%)
Query: 418 ELRGALARVGLTAKQIE-SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE 476
E+ + +GL A+ + SR+ LSGG++ KL A ++++LDEPTN+LD D+
Sbjct: 133 EIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLG 192
Query: 477 ELKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
L + L + G V++V+H EF EGL +V
Sbjct: 193 ALSKGLKNFRGGVVLVTHSREFTEGLTEEV 222
sp|P48334|YCXD_CYAPA PROBABLE ABC TRANSPORTER ATP-BINDING PROTEIN IN YCF23-APCF
INTERGENIC REGION (ORF244) >gi|1016217 (U30821) putative
protein of 244 amino acids [Cyanophora paradoxa]
Length = 244
Score = 62.5 bits (149), Expect = 8e-09
Identities = 56/210 (26%), Positives = 97/210 (45%), Gaps = 33/210 (15%)
Query: 326 EAKDLVIGY-NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV---- 380
E +L + Y + + I L +ESG+ I IG NG GKSTLLK+++ I + GE+
Sbjct: 10 EINNLTVSYPHGTVLQNIFLTIESGKLIGIIGPNGAGKSTLLKTIIEQIKPISGEIFYQG 69
Query: 381 --EKGNFQDIAYYEQEIKNPSQKTVLDDLWD--------------EYPSWNQAELRGALA 424
K I Y Q + + ++WD Y + ++ AL
Sbjct: 70 APLKNQRARIGYVPQRAQVDWDFPI--NVWDVVMMARLKKIGWFSSYSKKSYECVKAALE 127
Query: 425 RVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE---ELKRA 481
+V + K + + LSGG+Q ++ A+L+ E+++L+LDEP +D ++ L +
Sbjct: 128 KVDM-LKYKDRNIRELSGGQQQRVFLARLLAQEADLLLLDEPFTGVDFQTQKIIFSLLKE 186
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
I V+++ H+ L +IN +E
Sbjct: 187 QIASNKIVIVIHHD------LGESIINFDE 210
Score = 45.7 bits (106), Expect = 0.001
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW- 62
L + NL+ + + +++ + G+ IG +G NG GKST + I + P G++ +
Sbjct: 9 LEINNLTVSYPHGTVLQNIFLTIESGKLIGIIGPNGAGKSTLLKTIIEQIKPISGEIFYQ 68
Query: 63 -----SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMN 117
+++ R+GY+ Q A Q +D + D M
Sbjct: 69 GAPLKNQRARIGYVPQRA----------------QVDWDFPINVWDVVMM---------- 102
Query: 118 AALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
A L+ +G + + A +E+ + + D+++ ELSGGQ+ +
Sbjct: 103 ARLKKIGWF-SSYSKKSYECVKAALEK----VDMLKYKDRNIRELSGGQQQR 149
sp|P44735|RBSA_HAEIN RIBOSE TRANSPORT ATP-BINDING PROTEIN RBSA >gi|1074193|pir||H64072
high affinity ribose transport protein (rbsA) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1573483
(U32732) D-ribose ABC transporter, ATP-binding protein
(rbsA) [Haemophilus influenzae Rd]
Length = 493
Score = 62.5 bits (149), Expect = 8e-09
Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 29/200 (14%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDG-------EVEKGNFQD-----I 388
+++ K+ +G+ + G G G++ L K L G +P G E+E + QD I
Sbjct: 270 DVSFKLHAGEIVGVSGLMGAGRTELGKLLYGALPKTAGKVRLKNQEIENRSPQDGLDNGI 329
Query: 389 AYYEQE-----------IKNPSQKTVLDDLWDEYPSWNQAELRGA---LARVGLTAKQIE 434
Y ++ +K T LD + +QAE + + +
Sbjct: 330 VYISEDRKGDGLVLGMSVKENMSLTSLDHFSQKGGIRHQAEKMAVDDFILMFNIKTPNRD 389
Query: 435 SRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG---TVLM 491
+V +LSGG Q K+ A+ + T N+LILDEPT +DV AK+E+ + + E+ ++LM
Sbjct: 390 QQVGLLSGGNQQKVAIARGLMTRPNVLILDEPTRGVDVGAKKEIYQLINEFKKEGLSILM 449
Query: 492 VSHEPEFYEGLVSDVINCEE 511
+S + G+ V+ E
Sbjct: 450 ISSDMPEVLGMSDRVLVMRE 469
Score = 58.2 bits (138), Expect = 2e-07
Identities = 53/178 (29%), Positives = 84/178 (46%), Gaps = 30/178 (16%)
Query: 344 LKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE----KGNFQ--------DIAYY 391
L V +G+ +A +G NG GKSTL+K L G+ G +E NF I+
Sbjct: 25 LSVYAGRVMALMGENGAGKSTLMKVLTGIYSKDAGTIEYLNRSVNFNGPKASQEAGISII 84
Query: 392 EQEIKNPSQKTVLDDLW---DEYPSWN-------QAELRGALARVGLT--AKQIESRVYV 439
QE+ T+ ++++ + SW E LAR+G+T +KQ+ +
Sbjct: 85 HQELNLVGNLTIAENIFLGREFKTSWGAINWQKMHQEADKLLARLGVTHSSKQLCAE--- 141
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGT---VLMVSH 494
LS GEQ + AK ++ ES ++I+DEPT+ L E L + E ++ +SH
Sbjct: 142 LSIGEQQMVEIAKALSFESKVIIMDEPTDALTDTETEALFNVIRELKAENRGIVYISH 199
gi|2293296 (AF008220) putative transporter [Bacillus subtilis]
>gi|2635545|emb|CAB15039| (Z99119) similar to anion
transport ABC transporter (ATP-binding protein)
[Bacillus subtilis]
Length = 260
Score = 62.1 bits (148), Expect = 1e-08
Identities = 62/232 (26%), Positives = 96/232 (40%), Gaps = 51/232 (21%)
Query: 1 MSILNVKNLSHGFGD----RAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPD 56
MS L+V +++H + D+ F KG+ I F+G +G GK+T ++II G + P
Sbjct: 1 MSFLHVDHVTHTYFSIKEKTTAVRDIHFDAEKGDFISFLGPSGCGKTTLLSIIAGLIEPS 60
Query: 57 EGKVIW------SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAE 110
EG+V+ K+H +GYM Q L K+ E + +K+A+
Sbjct: 61 EGRVLIEGREPNQKEHNIGYMLQQDYLFPWKSIEENVLLG---------------LKIAD 105
Query: 111 MSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKX 170
+E AA +G L E F LID + K ELSGG R +
Sbjct: 106 TLTEESKAAA--LGLLPE------FGLIDVE--------------KKYPKELSGGMRQRA 143
Query: 171 XXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNY----LKNYENAFILISHDV 218
+ LD + L L+N LK Y+ +L++HD+
Sbjct: 144 ALARTLAPNPSLLLLDEPFSALDFQTKLSLENLVFRTLKEYQKTAVLVTHDI 195
Score = 58.2 bits (138), Expect = 2e-07
Identities = 51/172 (29%), Positives = 83/172 (47%), Gaps = 19/172 (11%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLI-PS-----LDGEVEKGNFQDIAYYEQE 394
+I+ E G I+F+G +G GK+TLL + GLI PS ++G +I Y Q+
Sbjct: 25 DIHFDAEKGDFISFLGPSGCGKTTLLSIIAGLIEPSEGRVLIEGREPNQKEHNIGYMLQQ 84
Query: 395 -----IKNPSQKTVLD-DLWDEYPSWNQAELRGALARVGLTAKQIESRV-YVLSGGEQAK 447
K+ + +L + D ++A G L GL +E + LSGG + +
Sbjct: 85 DYLFPWKSIEENVLLGLKIADTLTEESKAAALGLLPEFGLI--DVEKKYPKELSGGMRQR 142
Query: 448 LRFAKLMNTESNILILDEPTNHLDVDAKEELK----RALIEYPGTVLMVSHE 495
A+ + ++L+LDEP + LD K L+ R L EY T ++V+H+
Sbjct: 143 AALARTLAPNPSLLLLDEPFSALDFQTKLSLENLVFRTLKEYQKTAVLVTHD 194
sp|P39456|YCKI_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN YCKI
>gi|1805430|dbj|BAA08992| (D50453) homologue of
glutamine transport ATP-binding protein GlnQ of E. coli
[Bacillus subtilis] >gi|2632645|emb|CAB12153| (Z99105)
similar to glutamine ABC transporter (ATP-binding
protein) [Bacillus subtilis] >gi|2632660|emb|CAB12167|
(Z99106) similar to glutamine ABC transporter
(ATP-binding protein) [Bacillus subtilis]
Length = 247
Score = 62.1 bits (148), Expect = 1e-08
Identities = 54/202 (26%), Positives = 103/202 (50%), Gaps = 29/202 (14%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF------- 385
G NE L +I++K+E G+ IA +G +G GK+TLL+ L L GE+ +F
Sbjct: 12 GENEILK-KIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFSIDFSKK 70
Query: 386 -QDIAYYEQEIKNP---------SQKTVLDDLWD---EYPSWNQAELR----GALARVGL 428
+ + K+P +T L+++ + + N+ E+R L +VGL
Sbjct: 71 VKQADILKLRRKSPMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKVGL 130
Query: 429 TAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG- 487
K ++ + LSGG+Q ++ A+ + + +++ DEPT+ LD + E+ + + +
Sbjct: 131 KDK-MDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLANE 189
Query: 488 --TVLMVSHEPEFYEGLVSDVI 507
T+++V+HE +F + + +VI
Sbjct: 190 GWTMVVVTHEIKFAQEVADEVI 211
Score = 53.1 bits (125), Expect = 5e-06
Identities = 48/234 (20%), Positives = 96/234 (40%), Gaps = 22/234 (9%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L VK L+ FG+ I + + ++ KG+ I +G +G GK+T + + +P+ G++ +
Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
D ++ K ++A DI + M ALEN
Sbjct: 61 ---------DDFSI-DFSKKVKQA---------DILKLRRKSPMVFQAYHLFPHRTALEN 101
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
V E ++ + + + + +GL +D +LSGGQ+ +
Sbjct: 102 VMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPEL 161
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYEN---AFILISHDVPFMDEVVNIIYHVHG 233
T+ LD E + + +K+ N ++++H++ F EV + + + G
Sbjct: 162 MLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDG 215
sp|P54954|YXEO_BACSU PROBABLE AMINO-ACID ABC TRANSPORTER ATP-BINDING PROTEIN IN IDH-DEOR
INTERGENIC REGION >gi|1408500|dbj|BAA08331| (D45912)
homologous to GlnQ glutamine transport ATP-binding
protein of Bacillus stearothermophilus, belonging to the
ATP-binding cassette (ABC) family [Bacillus subtilis]
>gi|2636494|emb|CAB15984| (Z99124) similar to amino acid
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 249
Score = 62.1 bits (148), Expect = 1e-08
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 33/206 (16%)
Query: 328 KDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSL-------MGLIPSLDGEV 380
KDLV+ I+L+V+ G+ +A IG +G GKSTLL+ L GLI + ++
Sbjct: 12 KDLVV------LDGIDLEVKRGEVVAIIGPSGSGKSTLLRCLNLLERPDQGLIEIGEAKL 65
Query: 381 EKGNF---------QDIAYYEQEIKNPSQKTVLDDLWD-----EYPSWNQAELRG--ALA 424
F Q A Q KT L ++ + ++ ++A+ G L
Sbjct: 66 NAEKFTRKEAHRLRQQTAMVFQNYNLFKNKTALQNITEALIVAQHKPRDEAKRIGMEILK 125
Query: 425 RVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD---VDAKEELKRA 481
+VGL K +S +SGG+Q ++ A+ + + ++LDEPT+ LD V ++ ++
Sbjct: 126 QVGLEHK-ADSYPITMSGGQQQRIGIARALAVNPHAILLDEPTSALDPELVTGVLQVIKS 184
Query: 482 LIEYPGTVLMVSHEPEFYEGLVSDVI 507
+ E T+++V+HE F + + VI
Sbjct: 185 IAEKQTTMIIVTHEMAFAKEVADQVI 210
Score = 51.2 bits (120), Expect = 2e-05
Identities = 57/273 (20%), Positives = 104/273 (37%), Gaps = 29/273 (10%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
++ VKN+ F D + + + + +GE + +G +G GKST + + PD+G +
Sbjct: 1 MITVKNIRKAFKDLVVLDGIDLEVKRGEVVAIIGPSGSGKSTLLRCLNLLERPDQGLI-- 58
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+G A L K TR+ Q T M + + AL+N
Sbjct: 59 ----EIG----EAKLNAEKFTRKEAHRLRQ----------QTAMVFQNYNLFKNKTALQN 100
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
+ E + E + +GL D +SGGQ+ +
Sbjct: 101 ITEALIVAQHKPRDEAKRIGMEILKQVGLEHKADSYPITMSGGQQQRIGIARALAVNPHA 160
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNY---ENAFILISHDVPFMDEVVN-IIYHVHGLGITR 238
T+ LD E + + +K+ + I+++H++ F EV + +I+ G
Sbjct: 161 ILLDEPTSALDPELVTGVLQVIKSIAEKQTTMIIVTHEMAFAKEVADQVIFMADG----- 215
Query: 239 YSMGYAEFERVFEEKKAQLESLHNAQVAEQAKL 271
+ + E +F+ K + QV E A+L
Sbjct: 216 HIIEQGTPEELFDHPKNERTKRFIKQVGEPAEL 248
pir||I40452 ABC-type transport system probable ATP binding subunit - Bacillus
subtilis >gi|666983|emb|CAA54726| (X77636) putative ATP
binding subunit [Bacillus subtilis]
Length = 247
Score = 62.1 bits (148), Expect = 1e-08
Identities = 53/204 (25%), Positives = 103/204 (49%), Gaps = 33/204 (16%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYE 392
G NE L +I++K+E G+ IA +G +G GK+TLL+ L L GE+ +F +
Sbjct: 12 GENEILK-KIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAFDDFS--IDFS 68
Query: 393 QEIKNPS-------------------QKTVLDDLWD---EYPSWNQAELR----GALARV 426
+++K +T L+++ + + N+ E+R L +V
Sbjct: 69 KKVKQADILKLRRKSGMVFQAYHLFPHRTALENVMEGPVQVQKRNKEEVRKEAIQLLDKV 128
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
GL K ++ + LSGG+Q ++ A+ + + +++ DEPT+ LD + E+ + + +
Sbjct: 129 GLKDK-MDLYPFQLSGGQQQRVGIARALAIQPELMLFDEPTSALDPELVGEVLKVIKDLA 187
Query: 487 G---TVLMVSHEPEFYEGLVSDVI 507
T+++V+HE +F + + +VI
Sbjct: 188 NEGWTMVVVTHEIKFAQEVADEVI 211
Score = 53.1 bits (125), Expect = 5e-06
Identities = 48/234 (20%), Positives = 96/234 (40%), Gaps = 22/234 (9%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L VK L+ FG+ I + + ++ KG+ I +G +G GK+T + + +P+ G++ +
Sbjct: 1 MLTVKGLNKSFGENEILKKIDMKIEKGKVIAILGPSGSGKTTLLRCLNALEIPNRGELAF 60
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
D ++ K ++A DI + M ALEN
Sbjct: 61 ---------DDFSI-DFSKKVKQA---------DILKLRRKSGMVFQAYHLFPHRTALEN 101
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
V E ++ + + + + +GL +D +LSGGQ+ +
Sbjct: 102 VMEGPVQVQKRNKEEVRKEAIQLLDKVGLKDKMDLYPFQLSGGQQQRVGIARALAIQPEL 161
Query: 183 XXXXXXTNYLDEEHILWLKNYLKNYEN---AFILISHDVPFMDEVVNIIYHVHG 233
T+ LD E + + +K+ N ++++H++ F EV + + + G
Sbjct: 162 MLFDEPTSALDPELVGEVLKVIKDLANEGWTMVVVTHEIKFAQEVADEVIFIDG 215
sp|Q01937|LACK_AGRRD LACTOSE TRANSPORT ATP-BINDING PROTEIN LACK >gi|420867|pir||S34734
ATP-binding protein lacK - Agrobacterium radiobacter
Length = 363
Score = 62.1 bits (148), Expect = 1e-08
Identities = 50/178 (28%), Positives = 82/178 (45%), Gaps = 30/178 (16%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN--FQDIAYYEQEIKNPS 399
+NL+V SG+ + F+G +G GKSTLL+ + GL GE+ G D+ ++ I
Sbjct: 22 VNLEVSSGEFVVFVGPSGCGKSTLLRMIAGLEDISSGELTIGGTVMNDVDPSKRGIAMVF 81
Query: 400 QKTVLDDLWDEYPSWNQAELRG-ALARVGLTAKQIESRV-----------------YVLS 441
Q L YP E G AL G+ +IE RV LS
Sbjct: 82 QTYAL------YPHMTVRENMGFALRFAGMAKDEIERRVNAAAKILELDALMDRKPKALS 135
Query: 442 GGEQAKLRFAKLMNTESNILILDEPTNHLD----VDAKEELKRALIEYPGTVLMVSHE 495
GG++ ++ + + + ++ + DEP ++LD V + E+ R E T++ V+H+
Sbjct: 136 GGQRQRVAIGRAIVRQPDVFLFDEPLSNLDAELRVHMRVEIARLHKELNATIVYVTHD 193
Score = 45.7 bits (106), Expect = 0.001
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+ + + ++ +G + + V+ + GE + FVG +G GKST + +I G +
Sbjct: 1 MAEVRLTDIRKSYGSLEVIKGVNLEVSSGEFVVFVGPSGCGKSTLLRMIAGL------ED 54
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMS-EDEMNAA 119
I S + +G V+ ++ +A FQ TY M+ + M A
Sbjct: 55 ISSGELTIG----GTVMNDVDPSKRGIAMVFQ-----------TYALYPHMTVRENMGFA 99
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
L G ++E I+ +V A+ L L L+D+ LSGGQR +
Sbjct: 100 LRFAGMAKDE--------IERRVNAAAKILELDALMDRKPKALSGGQRQR 141
gb|AAD45713.1|AF160811_1 (AF160811) L-arabinose transport, ATP binding protein [Bacillus
stearothermophilus]
Length = 513
Score = 61.3 bits (146), Expect = 2e-08
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 27/180 (15%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP--SLDGEV----EKGNFQDIAYYEQ-- 393
+N KV G+ A G NG GKSTL+K L G+ P + DGE+ E F++I EQ
Sbjct: 24 VNFKVREGEIHALCGENGAGKSTLMKVLSGVYPYGTYDGEIVFKGEVCKFKNIKQSEQLG 83
Query: 394 ------EIKNPSQKTVLDDLW-------DEYPSWNQ--AELRGALARVGLTAKQIESRVY 438
E+ ++ ++++ +WN+ A+ + L +VGL + V
Sbjct: 84 IVIIHQELALIPYLSIAENIFLGNERAKKGIINWNETIAQTKKLLQKVGLEESP-HTLVG 142
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG---TVLMVSHE 495
L G+Q + AK + + +LILDEPT L+ D E L L+E + +++SH+
Sbjct: 143 QLGVGKQQLVEIAKALAKDVKLLILDEPTAALNEDDSENLLNLLLELKKQGLSAIIISHK 202
Score = 53.1 bits (125), Expect = 5e-06
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 50/243 (20%)
Query: 319 KPSRLVFEAKDLVIGYNEPLSSE------INLKVESGQKIAFIGSNGIGKSTLLKSLMGL 372
K ++FE K+ + + P+ SE INL + G+ + G G G++ L S+ G
Sbjct: 256 KIGEVIFEVKNWTVYH--PIYSERKVLDHINLSIRRGEIVGIAGLMGAGRTELAMSIFGR 313
Query: 373 I--PSLDGEVEKGNFQ-DIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVG-- 427
+ GE+ K + D++ + I N D + L+R+G
Sbjct: 314 SYGKKISGEIWKNGVKIDVSDVSKAIANGIAYVTEDRKGNGLILMEDIRKNITLSRLGKI 373
Query: 428 -----------------------LTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILD 464
+ + +V LSGG Q K+ +K + E +ILILD
Sbjct: 374 SNHFVVDENQEIVESERFRDQFKIKTPSVFQKVEALSGGNQQKVVLSKWIFAEPDILILD 433
Query: 465 EPTNHLDVDAKEELK---RALIEYPGTVLMVSHE-PEFY----------EGLVSDVINCE 510
EPT +DV AK E+ + L + +LM+S E PE EG ++ ++ E
Sbjct: 434 EPTRGIDVGAKYEIYTIIQQLADAGKGILMISSELPEILGMCDRIYVMSEGRITGEVSRE 493
Query: 511 EWT 513
E T
Sbjct: 494 EAT 496
gb|AAD01806| (AF026468) ABC transporter MutT [Streptococcus mutans]
Length = 705
Score = 61.3 bits (146), Expect = 2e-08
Identities = 71/295 (24%), Positives = 135/295 (45%), Gaps = 41/295 (13%)
Query: 199 WLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEKKAQLE 258
W K ++ + N+ IL + D+ + + N++ + + T M + +F L
Sbjct: 349 WEKEWVDSSMNSQILYN-DILSLQSLSNLVNQLFTISSTVILM----YSGIF------LI 397
Query: 259 SLHNAQVAEQAKLKDFIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSR 318
SL+ +A+ + A+V Q +AR +++ + + S+K + F +F R
Sbjct: 398 SLNKINMADLVLFQTLFVSLLASVV---QFQARRLEISNLSVY---SKKIQSLFT-RFKR 450
Query: 319 KPSRL------VFEAKDLVIGY--NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLM 370
KP ++ V +AKD+ Y N+ + + NL + G+KI +G +G GK+TLL L+
Sbjct: 451 KPDQIIPNDHYVLKAKDVSFSYYGNKQVIKDFNLTIRQGEKIVILGESGSGKTTLLNVLL 510
Query: 371 GLIPSLDGEVEKG--NF-QDIAYYEQEI---KNPSQKTVLDDLWDEYPSWNQAELR---- 420
GL + G++ G +F + + Q + P K ++ + N+
Sbjct: 511 GLY-NYQGDISYGIEDFRKKLGVVTQNVNLTSGPLIKNLIGNSIITSKILNEVNFAINAV 569
Query: 421 GALARVGLTAKQIESRVYV----LSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
+ + K+I S ++ LSGG+ +L A+ + S +LI DEP ++LD
Sbjct: 570 NMMEAINQMPKKIFSNLFQQGKNLSGGQVQRLLVARSLLNNSQLLIWDEPFSNLD 624
gi|2621685 (AE000842) ABC transporter [Methanobacterium thermoautotrophicum]
Length = 250
Score = 61.3 bits (146), Expect = 2e-08
Identities = 52/190 (27%), Positives = 89/190 (46%), Gaps = 17/190 (8%)
Query: 323 LVFEAKDLVIGYN-EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE 381
L E +DL N + INLKV G+ +A IG NG GK+TLL+ + G I G V
Sbjct: 4 LAIEMEDLSYCINGREILRNINLKVPMGELLAVIGPNGGGKTTLLRLITGQIKPTRGTVR 63
Query: 382 K------------GNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLT 429
G +++E + +TVL + + + + + AL + +
Sbjct: 64 VLGMKPEDSRSRIGYLPQRSHFETDFPINILQTVLIGTYRRFEAPTDDDRKKALRALKMV 123
Query: 430 A--KQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG 487
+ + ++ LSGGE ++ A+ + E ++L+LDEPT +D + R + E
Sbjct: 124 GMLEYRDRKIGELSGGELQRVFLARALVREPDLLLLDEPTASVDPAFRGSFYRIIDELRD 183
Query: 488 --TVLMVSHE 495
T+++VSH+
Sbjct: 184 EMTIVIVSHD 193
Score = 47.3 bits (110), Expect = 3e-04
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG-- 58
M + +++LS+ R I +++ ++ GE + +G NG GK+T + +ITG + P G
Sbjct: 3 MLAIEMEDLSYCINGREILRNINLKVPMGELLAVIGPNGGGKTTLLRLITGQIKPTRGTV 62
Query: 59 KVIWSK----KHRVGYMDQHA 75
+V+ K + R+GY+ Q +
Sbjct: 63 RVLGMKPEDSRSRIGYLPQRS 83
dbj|BAA18768| (D90917) haemolysin secretion ATP-binding protein [Synechocystis
sp.]
Length = 733
Score = 61.3 bits (146), Expect = 2e-08
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 34/199 (17%)
Query: 338 LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF------------ 385
L ++++ + G+ + IG +G GKSTL K L GL GE+ GN
Sbjct: 514 LIEDLSVTIPGGKVVGLIGKSGCGKSTLAKILTGLYSVQAGEINIGNHSLGDFSLICLRK 573
Query: 386 ------QDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYV 439
QD ++ + I + + + D ++ S ++ A V +Q E+ +
Sbjct: 574 QVVLVSQDAFFFHRSIIDNFRLSSPDITLEQVIS--ACQIAQAHEFVSQFPEQYETILGA 631
Query: 440 ----LSGGEQAKLRFAKLMNTESNILILDEPTNHLD-VDAKEELKRALIEYPG-TVLMVS 493
+SGG++ +L A+ + + +LILDE T +LD V E L L + G T +++S
Sbjct: 632 VAANISGGQKQRLAIARAIVNDPAVLILDESTANLDPVTEAEVLNSLLTKRQGKTTILIS 691
Query: 494 HEPEFYEGLVSDVINCEEW 512
H P+ VINC +W
Sbjct: 692 HRPK--------VINCADW 702
gi|2621192 (AE000803) methyl coenzyme M reductase system, component A2 homolog
[Methanobacterium thermoautotrophicum]
Length = 590
Score = 60.9 bits (145), Expect = 2e-08
Identities = 54/202 (26%), Positives = 87/202 (42%), Gaps = 34/202 (16%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPS 399
S++NL+V G+ + +G +G GK+TLL+ L G+ P G + + A Q +
Sbjct: 45 SDVNLEVAEGEILGILGMSGSGKTTLLRILRGVEPFDSGRITLDDVTVEADSSQYYFSKL 104
Query: 400 QKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIES-------------------RVY-- 438
+K L + W + L + ++ T ES RV
Sbjct: 105 KKKTAIHLQRSFGLWAETALENVIRKLYATRYGDESMTDFDYASDEFGEDAMELLRVVGL 164
Query: 439 ---------VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL----IEY 485
VLSGGE+ +L A+ + + +L+LDEP K+E+ A+ E
Sbjct: 165 EHKADHFAPVLSGGEKQRLIMARQLAKKPRVLLLDEPATMSCPRTKQEILDAIKNINREL 224
Query: 486 PGTVLMVSHEPEFYEGLVSDVI 507
TV++VSH PE +E L V+
Sbjct: 225 GVTVVLVSHLPEVHEYLADRVV 246
Score = 57.0 bits (135), Expect = 4e-07
Identities = 65/267 (24%), Positives = 100/267 (37%), Gaps = 45/267 (16%)
Query: 3 ILNVKNLSHGF-----GDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDE 57
IL V+ L F G DV+ + +GE + +G +G GK+ + +I G +PDE
Sbjct: 285 ILRVRGLGKRFVLLKGGAVLEMSDVNLDIAEGEMVSIIGPSGAGKTVLLRMIGGLDLPDE 344
Query: 58 GKV------IWSKKH-----------RVGYMDQHAVLGKGKTTREALAEAFQYL------ 94
G V W H ++G+M Q L T R +A
Sbjct: 345 GTVEFRLNSEWVNMHEPGVKRMGIRRKMGFMHQEFALVHHATIRSQIASRLGVKGEHVVA 404
Query: 95 --------FDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETA 146
I + D ++ ++ E E LE +G E L+ D++V+ A
Sbjct: 405 EAKKRADELGISDMVLDVLYQLTDLPETEARYRLEKLGLSPEILEELFPSFPDSEVKRYA 464
Query: 147 ----RGLGL-TPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLK 201
R L L +LD+ ELSGG+R + LD + +
Sbjct: 465 EPIFRALDLPLSILDRRSYELSGGERVRATLALVLASRPDVLILDEPFGDLDPITLRMVS 524
Query: 202 NYLKNYENAF----ILISHDVPFMDEV 224
N LK F I++SH V F+ E+
Sbjct: 525 NSLKRINMEFGTTIIMVSHHVDFIREL 551
Score = 52.7 bits (124), Expect = 7e-06
Identities = 33/114 (28%), Positives = 57/114 (49%), Gaps = 5/114 (4%)
Query: 403 VLDDLWDEYPSWNQAELRGALAR-VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNIL 461
+L++L+ +P + R + L ++ R Y LSGGE+ + A ++ + ++L
Sbjct: 447 ILEELFPSFPDSEVKRYAEPIFRALDLPLSILDRRSYELSGGERVRATLALVLASRPDVL 506
Query: 462 ILDEPTNHLDV----DAKEELKRALIEYPGTVLMVSHEPEFYEGLVSDVINCEE 511
ILDEP LD LKR +E+ T++MVSH +F L + + E+
Sbjct: 507 ILDEPFGDLDPITLRMVSNSLKRINMEFGTTIIMVSHHVDFIRELSTRAVMVED 560
Score = 42.6 bits (98), Expect = 0.008
Identities = 33/143 (23%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQEIKNP 398
S++NL + G+ ++ IG +G GK+ LL+ + GL +G VE + N + + +E +K
Sbjct: 307 SDVNLDIAEGEMVSIIGPSGAGKTVLLRMIGGLDLPDEGTVEFRLNSEWVNMHEPGVKRM 366
Query: 399 SQKTVLDDLWDEYPSWNQAELRGALA-RVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTE 457
+ + + E+ + A +R +A R+G+ + + + +AK R +L ++
Sbjct: 367 GIRRKMGFMHQEFALVHHATIRSQIASRLGVKGEHVVA---------EAKKRADELGISD 417
Query: 458 SNILILDEPTNHLDVDAKEELKR 480
+ +L + T+ + +A+ L++
Sbjct: 418 MVLDVLYQLTDLPETEARYRLEK 440
gi|1574050 (U32782) thiamin ABC transporter, ATP-binding protein, putative
[Haemophilus influenzae Rd]
Length = 215
Score = 60.9 bits (145), Expect = 2e-08
Identities = 59/200 (29%), Positives = 94/200 (46%), Gaps = 22/200 (11%)
Query: 331 VIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--EKGNFQDI 388
VI ++ L NL V +G+++A IG +G GKSTLL + G GE+ N
Sbjct: 7 VILNDKTLPMCFNLSVNAGERVAIIGESGAGKSTLLNLIAGFEFPAQGEIWLNDKNHTRS 66
Query: 389 AYYEQEIKNPSQK-------TVLDDL------WDEYPSWNQAELRGALARVGLTAKQIES 435
A YE+ + Q+ TV +L + + Q ++ VGL +E
Sbjct: 67 APYERPVSMLFQENNLFPHLTVQQNLALGIKPSLKLTALEQEKIEQVACSVGL-GDYLER 125
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALI-----EYPGTVL 490
LSGG++ ++ A+ + + IL+LDEP + LD + E+ ALI E T+L
Sbjct: 126 LPNSLSGGQKQRVALARCLLRDKPILLLDEPFSALDQKLRVEM-LALIAKLCDEKDLTLL 184
Query: 491 MVSHEPEFYEGLVSDVINCE 510
+V+H+P G + V+ E
Sbjct: 185 LVTHQPSELIGSIDQVLVVE 204
sp|P44986|YABJ_HAEIN HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN HI1021
>gi|1074609|pir||E64164 hypothetical protein HI1021 -
Haemophilus influenzae (strain Rd KW20)
Length = 229
Score = 60.9 bits (145), Expect = 2e-08
Identities = 59/200 (29%), Positives = 94/200 (46%), Gaps = 22/200 (11%)
Query: 331 VIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--EKGNFQDI 388
VI ++ L NL V +G+++A IG +G GKSTLL + G GE+ N
Sbjct: 21 VILNDKTLPMCFNLSVNAGERVAIIGESGAGKSTLLNLIAGFEFPAQGEIWLNDKNHTRS 80
Query: 389 AYYEQEIKNPSQK-------TVLDDL------WDEYPSWNQAELRGALARVGLTAKQIES 435
A YE+ + Q+ TV +L + + Q ++ VGL +E
Sbjct: 81 APYERPVSMLFQENNLFPHLTVQQNLALGIKPSLKLTALEQEKIEQVACSVGL-GDYLER 139
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALI-----EYPGTVL 490
LSGG++ ++ A+ + + IL+LDEP + LD + E+ ALI E T+L
Sbjct: 140 LPNSLSGGQKQRVALARCLLRDKPILLLDEPFSALDQKLRVEM-LALIAKLCDEKDLTLL 198
Query: 491 MVSHEPEFYEGLVSDVINCE 510
+V+H+P G + V+ E
Sbjct: 199 LVTHQPSELIGSIDQVLVVE 218
gb|AAF31421.1| (AF213381) ATP-binding cassette protein [Mus musculus]
Length = 120
Score = 60.5 bits (144), Expect = 3e-08
Identities = 29/71 (40%), Positives = 46/71 (63%)
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHEPEFY 499
LSGG+++++ FA++ N ILDEPTNHLD++ E L +AL + G V++VSH+ F
Sbjct: 22 LSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSHDERFI 81
Query: 500 EGLVSDVINCE 510
+ ++ CE
Sbjct: 82 RLVCKELWVCE 92
Score = 45.3 bits (105), Expect = 0.001
Identities = 27/97 (27%), Positives = 44/97 (44%)
Query: 157 KDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLDEEHILWLKNYLKNYENAFILISH 216
+ VA LSGGQ+++ TN+LD E I L L N+ IL+SH
Sbjct: 17 RPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNFRGGVILVSH 76
Query: 217 DVPFMDEVVNIIYHVHGLGITRYSMGYAEFERVFEEK 253
D F+ V ++ +TR G+ ++ + +E+
Sbjct: 77 DERFIRLVCKELWVCENGSVTRVEGGFDQYRALLQEQ 113
gb|AAD54843.1|AF137379_66 (AF137379) probable transport protein [Nephroselmis olivacea]
Length = 343
Score = 60.5 bits (144), Expect = 3e-08
Identities = 50/182 (27%), Positives = 86/182 (46%), Gaps = 34/182 (18%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK 401
+NL+V++G +A +G +G GKSTLL+ + GL + +G++ +D Y P QK
Sbjct: 21 VNLEVKAGSLVALVGPSGSGKSTLLRMIAGLERADEGKIWLAG-RDATY------APIQK 73
Query: 402 TVLDDLWDEYPSWNQAELRGALARVGLTAK-----QIESRV-----------------YV 439
+ ++ Y + + ++ GL + QI SRV
Sbjct: 74 RHIGFVFQNYALFKHLNVAKNIS-FGLEVRQANPNQIRSRVRDLLQLIQLEHMADRYPAQ 132
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRAL----IEYPGTVLMVSHE 495
LSGG++ ++ A+ + E +L+LDEP LD + EL+ L E P T + V+H+
Sbjct: 133 LSGGQRQRVALARALAVEPKVLLLDEPFGALDARVRRELRSWLRDLHQEMPVTTVFVTHD 192
Query: 496 PE 497
+
Sbjct: 193 QQ 194
Score = 44.5 bits (103), Expect = 0.002
Identities = 30/89 (33%), Positives = 45/89 (49%), Gaps = 12/89 (13%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MSIL ++N+S FG + V+ + G + VG +G GKST + +I G DEGK
Sbjct: 1 MSIL-IENISKTFGTFRALDHVNLEVKAGSLVALVGPSGSGKSTLLRMIAGLERADEGK- 58
Query: 61 IW----------SKKHRVGYMDQHAVLGK 79
IW +K +G++ Q+ L K
Sbjct: 59 IWLAGRDATYAPIQKRHIGFVFQNYALFK 87
gb|AAB71758.2| (U83661) multidrug resistance protein 5 [Homo sapiens]
Length = 1437
Score = 60.5 bits (144), Expect = 3e-08
Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-- 335
KK A+ G+ K + ++L + E ++E+ K H +PS E K + +G+
Sbjct: 517 KKDKRASRGK-KEKVRQLQRTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKHIHLGHLRL 574
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L+++ G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLHSIDLEIQEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAISGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEYDEERYNSVLNSCCLRPDLAILPSSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
dbj|BAA76608.1| (AB019002) MRP5 [Homo sapiens]
Length = 1437
Score = 60.5 bits (144), Expect = 3e-08
Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-- 335
KK A+ G+ K + ++L + E ++E+ K H +PS E K + +G+
Sbjct: 517 KKDKRASRGK-KEKVRQLQRTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKHIHLGHLRL 574
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L+++ G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLHSIDLEIQEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAISGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEYDEERYNSVLNSCCLRPDLAILPSSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
ref|NP_005679.1|| ATP-binding cassette, sub-family C (CFTR/MRP), member 5 >gi|4140698
(AF104942) ABC transporter MOAT-C [Homo sapiens]
Length = 1437
Score = 60.5 bits (144), Expect = 3e-08
Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-- 335
KK A+ G+ K + ++L + E ++E+ K H +PS E K + +G+
Sbjct: 517 KKDKRASRGK-KEKVRQLQRTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKHIHLGHLRL 574
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L+++ G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLHSIDLEIQEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAISGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEYDEERYNSVLNSCCLRPDLAILPSSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
gi|2650419 (AE001090) branched-chain amino acid ABC transporter, ATP-binding
protein (braF-1) [Archaeoglobus fulgidus]
Length = 281
Score = 60.5 bits (144), Expect = 3e-08
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
S+L V+N+ FG+ ++ E V+ + K E +G +G NG GK+T NIITG L PD G++
Sbjct: 54 SMLKVRNVHKRFGECSVLEGVNLEIDKSERVGIIGPNGAGKTTLFNIITGFLKPDRGEIR 113
Query: 62 WSKKHRVG 69
+ + G
Sbjct: 114 FRSRDITG 121
Score = 44.1 bits (102), Expect = 0.003
Identities = 42/156 (26%), Positives = 63/156 (39%), Gaps = 33/156 (21%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---------KGN-------- 384
+NL+++ +++ IG NG GK+TL + G + GE+ K N
Sbjct: 74 VNLEIDKSERVGIIGPNGAGKTTLFNIITGFLKPDRGEIRFRSRDITGLKPNQLAKMGIV 133
Query: 385 --FQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSG 442
FQ + + + TV DDL +Y L GL K+ E LS
Sbjct: 134 RTFQIVKVFSNMTVEQNMLTVSDDL--DY-----------LREFGLWEKRHELAAN-LSY 179
Query: 443 GEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
GE KL A + +L+LDEP + L +L
Sbjct: 180 GELRKLSIALALAPNPKLLLLDEPFSGLSPKEARDL 215
dbj|BAA22887| (AB005659) a short type of multidrug resistance protein homologue
[Homo sapiens]
Length = 946
Score = 60.5 bits (144), Expect = 3e-08
Identities = 62/245 (25%), Positives = 119/245 (48%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-- 335
KK A+ G+ K + ++L + E ++E+ K H +PS E K + +G+
Sbjct: 26 KKDKRASRGK-KEKVRQLQRTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKHIHLGHLRL 83
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L+++ G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 84 QRTLHSIDLEIQEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAISGTFAYVAQQAWI 143
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 144 LNATLRDNILFGKEYDEERYNSVLNSCCLRPDLAILPSSDLTEIGERGANLSGGQRQRIS 203
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 204 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQY-------L 256
Query: 507 INCEE 511
++C+E
Sbjct: 257 VDCDE 261
ref|NP_031404.1|| ATP-binding cassette, sub-family A (ABC1), member 4 >gi|2547314
(AF000149) ATP-binding cassette transporter [Mus
musculus]
Length = 2310
Score = 60.5 bits (144), Expect = 3e-08
Identities = 69/252 (27%), Positives = 107/252 (42%), Gaps = 37/252 (14%)
Query: 274 FIARKKANVATSGQAKAREKKLAKME-IVETIS--EKPKPHFDFKFSRKPSRLV--FEAK 328
F+ ++ + G + E+ L K E + E + E P+ D F R+ LV K
Sbjct: 873 FLLQESYWLGGEGCSTREERALEKTEPLTEEMEDPEHPEGMNDSFFERELPGLVPGVCVK 932
Query: 329 DLVIGYN---EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF 385
+LV + P +N+ Q AF+G NG GK+T L L GL+P G V G
Sbjct: 933 NLVKVFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLIGG- 991
Query: 386 QDIAYYEQEIKN-----PSQKTVLDDL----------------WDEYPSWNQAELRGALA 424
+DI ++ P + L W+E Q E+ L
Sbjct: 992 KDIETNLDVVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEE----AQLEMEAMLE 1047
Query: 425 RVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE 484
GL K+ E LSGG Q KL A +S +++LDEPT+ +D ++ + L++
Sbjct: 1048 DTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLLLK 1106
Query: 485 YPG--TVLMVSH 494
Y T++M +H
Sbjct: 1107 YRSGRTIIMSTH 1118
Score = 44.1 bits (102), Expect = 0.003
Identities = 49/188 (26%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 333 GYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---KGNFQDIA 389
G + P + + V G+ +G NG GK+T K L G G+ K I+
Sbjct: 1948 GSSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTSIS 2007
Query: 390 YYEQEIKNPSQKTVLDDLWDEYPS-WNQAELRGA-------LARVGLTAKQI----ESRV 437
Q + Q +DDL + A LRG +A G+ + + +
Sbjct: 2008 DVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPSKEIEKVANWGIQSLGLSLYADRLA 2067
Query: 438 YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR---ALIEYPGTVLMVSH 494
SGG + KL A + +L+LDEPT +D A+ L ++I V++ SH
Sbjct: 2068 GTYSGGNKRKLSTAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2127
Query: 495 EPEFYEGL 502
E E L
Sbjct: 2128 SMEECEAL 2135
sp|P37624|YHIH_ECOLI HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YHIH >gi|2367231
(AE000424) putative ATP-binding component of a transport
system, fragment 1 [Escherichia coli]
Length = 894
Score = 60.5 bits (144), Expect = 3e-08
Identities = 46/122 (37%), Positives = 64/122 (51%), Gaps = 17/122 (13%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW- 62
+ ++L+ FG + V+FR+ +GE GF+G+NG GKST M ++TG L EG+ W
Sbjct: 260 IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEA-WL 318
Query: 63 ----------SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDI-EAQINDTYMKMAEM 111
+ RVGYM Q L T R+ L E LF I EA+I ++AEM
Sbjct: 319 FGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNL-ELHARLFHIPEAEIP---ARVAEM 374
Query: 112 SE 113
SE
Sbjct: 375 SE 376
Score = 54.7 bits (129), Expect = 2e-06
Identities = 44/180 (24%), Positives = 87/180 (47%), Gaps = 16/180 (8%)
Query: 321 SRLVFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE 379
+ + EA+DL + + ++ + +N ++ G+ F+GSNG GKST +K L GL+P+ +GE
Sbjct: 256 AEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGE 315
Query: 380 V----------EKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWN--QAELRGALARVG 427
+ + + Y Q ++ TV +L ++ +AE+ +A +
Sbjct: 316 AWLFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS 375
Query: 428 LTAKQIESRVYV---LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE 484
K + + L G + +L A + +LILDEPT+ +D A++ + +++
Sbjct: 376 ERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVD 435
pir||S47705 hypothetical protein f648 - Escherichia coli >gi|912462 (U00039) No
definition line found [Escherichia coli]
Length = 648
Score = 60.5 bits (144), Expect = 3e-08
Identities = 46/122 (37%), Positives = 64/122 (51%), Gaps = 17/122 (13%)
Query: 4 LNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW- 62
+ ++L+ FG + V+FR+ +GE GF+G+NG GKST M ++TG L EG+ W
Sbjct: 14 IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEA-WL 72
Query: 63 ----------SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDI-EAQINDTYMKMAEM 111
+ RVGYM Q L T R+ L E LF I EA+I ++AEM
Sbjct: 73 FGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNL-ELHARLFHIPEAEIP---ARVAEM 128
Query: 112 SE 113
SE
Sbjct: 129 SE 130
Score = 54.7 bits (129), Expect = 2e-06
Identities = 44/180 (24%), Positives = 87/180 (47%), Gaps = 16/180 (8%)
Query: 321 SRLVFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE 379
+ + EA+DL + + ++ + +N ++ G+ F+GSNG GKST +K L GL+P+ +GE
Sbjct: 10 AEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGE 69
Query: 380 V----------EKGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWN--QAELRGALARVG 427
+ + + Y Q ++ TV +L ++ +AE+ +A +
Sbjct: 70 AWLFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS 129
Query: 428 LTAKQIESRVYV---LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE 484
K + + L G + +L A + +LILDEPT+ +D A++ + +++
Sbjct: 130 ERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVD 189
dbj|BAA83964.1| (AB024564) YHCG [Bacillus halodurans]
Length = 230
Score = 60.1 bits (143), Expect = 4e-08
Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 17/185 (9%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-EKGN------FQDIAY--- 390
E+NL++ G+ I +G NG GKST LK + GLI GEV GN ++Y
Sbjct: 19 EVNLELTRGKIIGLVGENGSGKSTTLKLIAGLIYPTKGEVLVNGNKVSRRIASSVSYLSE 78
Query: 391 YEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRF 450
++ + + + ++ ++P ++ + L + L ES++ LS G + +L+
Sbjct: 79 LDEYYRFYNVEQTIEFYASQFPDFDPKKAYEILTFMKLDP---ESKLKQLSKGNRGRLKI 135
Query: 451 AKLMNTESNILILDEPTNHLDVDAKEELKRALIEY----PGTVLMVSHEPEFYEGLVSDV 506
+ ++++DEP + LD ++ + + LI + VL+ +HE E ++ +V
Sbjct: 136 VLSLARNVPVILMDEPLSGLDPMVRQSIVKGLISFIDLERQLVLITTHEVREVENILDEV 195
Query: 507 INCEE 511
I +E
Sbjct: 196 IAIKE 200
Score = 47.3 bits (110), Expect = 3e-04
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
+++ + ++ + +A ++V+ L +G+ IG VG NG GKST + +I G + P +G+V+
Sbjct: 1 MISFQQVTKKYRQKAALQEVNLELTRGKIIGLVGENGSGKSTTLKLIAGLIYPTKGEVL 59
emb|CAB52067.1| (AL109732) putative branched chain amino acid transport ATP-binding
protein [Streptomyces coelicolor A3(2)]
Length = 309
Score = 60.1 bits (143), Expect = 4e-08
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 36/200 (18%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-----------KGNFQDIAY 390
++L V SG+ + IG NG GK+T L GL +GEV K +A
Sbjct: 40 VDLTVNSGEIVGLIGPNGAGKTTFFNCLTGLYIPTEGEVRYKGQVLPAKSFKVTAAGVAR 99
Query: 391 YEQEIKNPSQKTVLDDL------------WDEY---PSWNQAELRG------ALARVGLT 429
Q I+ + TVL+++ W P +++AE L VGL
Sbjct: 100 TFQNIRLFANMTVLENVLVGRHTRTKEGFWSAVLRGPGFHRAEKASRERALELLEFVGL- 158
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPT---NHLDVDAKEELKRALIEYP 486
A + + L GEQ KL A+ + +E +L+LDEPT N + A EEL A+ +
Sbjct: 159 APKADHLARNLPYGEQRKLEIARALASEPGLLLLDEPTAGMNPQETRATEELVFAIRDQG 218
Query: 487 GTVLMVSHEPEFYEGLVSDV 506
VL++ H+ F L V
Sbjct: 219 IAVLVIEHDMRFIFNLCDRV 238
Score = 50.4 bits (118), Expect = 4e-05
Identities = 29/91 (31%), Positives = 42/91 (45%), Gaps = 8/91 (8%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
+IL+ + ++ FG V + GE +G +G NG GK+TF N +TG +P EG+
Sbjct: 20 TILDARGVTMRFGGLTAVNGVDLTVNSGEIVGLIGPNGAGKTTFFNCLTGLYIPTEGE-- 77
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQ 92
V Y Q K T +A FQ
Sbjct: 78 ------VRYKGQVLPAKSFKVTAAGVARTFQ 102
gb|AAD37716.1|AF146074_1 (AF146074) ABC protein [Homo sapiens]
Length = 1437
Score = 60.1 bits (143), Expect = 4e-08
Identities = 61/245 (24%), Positives = 119/245 (47%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYN-- 335
KK A+ G+ K + ++L + E ++E+ K H +PS E K + +G+
Sbjct: 517 KKDKRASRGK-KEKVRQLQRTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKHIHLGHLRL 574
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ ++L+++ G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLHSVDLEIQEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAISGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEYDEERYNSVLNSCCLRPDLAILPSSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKHLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
emb|CAB14684| (Z99117) glutamine ABC transporter (ATP-binding protein) [Bacillus
subtilis] >gi|2635206|emb|CAB14701| (Z99118) glutamine
ABC transporter (ATP-binding protein) [Bacillus
subtilis]
Length = 242
Score = 60.1 bits (143), Expect = 4e-08
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGL------IPSLDGEVEKGNFQDIAYYEQE 394
+INL++E G+ + IG +G GKSTLL+ + L + +++G DI Q
Sbjct: 19 QINLQIEKGEVVVIIGPSGSGKSTLLRCINRLESINEGVLTVNGTAINDRKTDINQVRQN 78
Query: 395 IKNPSQ-------KTVLDDLW-------DEYPSWNQAELRGALARVGLTAKQIESRVYVL 440
I Q KTVL ++ + P + R L +VG+ K ++ L
Sbjct: 79 IGMVFQHFHLYPHKTVLQNIMLAPVKVLRQSPEQAKETARYYLEKVGIPDK-ADAYPSQL 137
Query: 441 SGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE---LKRALIEYPGTVLMVSHEPE 497
SGG+Q ++ A+ + + +++ DEPT+ LD + E + + L + T+++V+HE
Sbjct: 138 SGGQQQRVAIARGLAMKPEVMLFDEPTSALDPEMIGEVLDVMKTLAKEGMTMVVVTHEMG 197
Query: 498 FYEGLVSDVINCEE 511
F + + ++ +E
Sbjct: 198 FAKEVADRIVFIDE 211
sp|P26361|CFTR_MOUSE CYSTIC FIBROSIS TRANSMEMBRANE CONDUCTANCE REGULATOR (CFTR)
(CAMP-DEPENDENT CHLORIDE CHANNEL) >gi|109761|pir||A39901
cystic fibrosis transmembrane conductance regulator -
mouse (strain C57/Bl/6J) >gi|192567 (M69298) cystic
fibrosis transmembrane conductance regulator [Mus
musculus]
Length = 1476
Score = 60.1 bits (143), Expect = 4e-08
Identities = 48/220 (21%), Positives = 107/220 (47%), Gaps = 14/220 (6%)
Query: 270 KLKDFIARKKA-----NVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLV 324
K++DF+ +++ N+ T+G + E + + + + D K S + +
Sbjct: 370 KIQDFLQKQEYKVLEYNLMTTGIIMENVTAFWEEGFGELLQKAQQSNGDRKHSSDENNVS 429
Query: 325 FEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KG 383
F LV P+ INL +E G+ +A GS G+GK++LL ++G + + +G ++ G
Sbjct: 430 FSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGLGKTSLLMLILGELEASEGIIKHSG 486
Query: 384 NFQDIAYYEQEIKNPSQKTVLDDL-WDEYPSWNQAELRGALARVGLTAKQIESRV----Y 438
+ + + ++ ++ + +DEY + + + A+Q + +
Sbjct: 487 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 546
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
LSGG++A++ A+ + ++++ +LD P +LDV +E++
Sbjct: 547 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 586
Score = 55.0 bits (130), Expect = 1e-06
Identities = 48/202 (23%), Positives = 93/202 (45%), Gaps = 25/202 (12%)
Query: 320 PSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSL 376
PS KDL + Y + + I+ + GQ++ +G G GKSTLL + + ++ ++
Sbjct: 1201 PSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRML-NI 1259
Query: 377 DGEVE----KGNFQDIAYYEQEIKNPSQKTVL-----------DDLWDEYPSWNQAELRG 421
G++E N + + + +QK + + W + W A+ G
Sbjct: 1260 KGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADEVG 1319
Query: 422 ALARVGLTAKQIESRV----YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ + Q+ + YVLS G + + A+ + +++ I++LDEP+ HLD +
Sbjct: 1320 LKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSAHLDPITYQV 1379
Query: 478 LKRALIE-YPG-TVLMVSHEPE 497
++R L + + G TV++ H E
Sbjct: 1380 IRRVLKQAFAGCTVILCEHRIE 1401
gi|2649574 (AE001033) ABC transporter, ATP-binding protein [Archaeoglobus
fulgidus]
Length = 275
Score = 59.7 bits (142), Expect = 5e-08
Identities = 53/185 (28%), Positives = 82/185 (43%), Gaps = 31/185 (16%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEIKNPSQK 401
I+ V G+ + IG NG GKST LK L GLI GEV Y+ ++ ++
Sbjct: 20 ISFSVRRGEVLGLIGENGAGKSTTLKILAGLIRPDGGEVR--------YFGKDFDEEMKR 71
Query: 402 TV-----LDDLWD-----EYPSW------NQAELRGALARVGLTAKQIESRVYVLSGGEQ 445
+ +D L+D EY + +A++ G L R+ L K I LS G +
Sbjct: 72 IIGYLPEIDALYDNMTVSEYLNLFADIYDVRADIDGLLERLNLPDKYISD----LSKGMR 127
Query: 446 AKLRFAKLMNTESNILILDEPTNHLDVDAK---EELKRALIEYPGTVLMVSHEPEFYEGL 502
K+ A+ + + +L+ DEPT LD EL R L E ++ +H + E +
Sbjct: 128 RKVSIARTLLHDPEVLVYDEPTGGLDPTTSLSIAELLRELAERGKIIVFSAHNMYYVERI 187
Query: 503 VSDVI 507
V+
Sbjct: 188 ADKVV 192
Score = 57.8 bits (137), Expect = 2e-07
Identities = 34/107 (31%), Positives = 55/107 (50%), Gaps = 8/107 (7%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
+L V+NL +G + +SF + +GE +G +G NG GKST + I+ G + PD G+V +
Sbjct: 1 MLEVRNLFKRYGSFEAVKGISFSVRRGEVLGLIGENGAGKSTTLKILAGLIRPDGGEVRY 60
Query: 63 -------SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQIN 102
K +GY+ + L T E L F ++D+ A I+
Sbjct: 61 FGKDFDEEMKRIIGYLPEIDALYDNMTVSEYL-NLFADIYDVRADID 106
ref|NP_005041.1|| ATP-binding cassette, sub-family D (ALD), member 4
>gi|6831464|sp|O14678|ABD4_HUMAN PEROXISOMAL MEMBRANE
PROTEIN 69 (PMP69) (PEROXISOMAL MEMBRANE PROTEIN 1-LIKE)
(PXMP1-L) (P70R) >gi|2343157 (AF009746) peroxisomal
membrane protein 69 [Homo sapiens]
>gi|2706518|emb|CAA74699| (Y14318) peroxisomal
ABC-transporter [Homo sapiens]
Length = 606
Score = 59.7 bits (142), Expect = 5e-08
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 21/199 (10%)
Query: 335 NEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK-GNF--QDIAYY 391
++PL +++LK+ GQ + G+ G GK++LL+ L GL S G V+ +F + +
Sbjct: 400 DKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLTDFGPHGVLFL 459
Query: 392 EQE---IKNPSQKTVLDDLWDEYPSWNQAE------------LRGALARVGLTAKQIESR 436
Q+ ++ V+ L + YP A+ L +AR +Q++
Sbjct: 460 PQKPFFTDGTLREQVIYPLKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWN 519
Query: 437 VY-VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPGTVLMVSHE 495
Y VLS GE +L FA+L + +LDE T+ L + + EL R + T + V H
Sbjct: 520 WYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHR 579
Query: 496 P--EFYEGLVSDVINCEEW 512
E + LV + W
Sbjct: 580 QSLEKFHSLVLKLCGGGRW 598
gi|2293417 (AF007800) MtlK [Pseudomonas fluorescens]
Length = 367
Score = 59.7 bits (142), Expect = 5e-08
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 30/170 (17%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M+ L +KNL GF +I + + + E + FVG +G GKST + +I G EG +
Sbjct: 1 MANLKIKNLQKGFEGFSIIKGIDLEVNDKEFVVFVGPSGCGKSTLLRLIAGLEEVSEGTI 60
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMS-EDEMNAA 119
+D + R+ LA FQ TY MS M+ A
Sbjct: 61 ---------ELDGRDITEVTPAKRD-LAMVFQ-----------TYALYPHMSVRKNMSFA 99
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
L+ G D L+++KV E AR L L PLL++ +LSGGQR +
Sbjct: 100 LDLAG--------VDKQLVESKVNEAARILELGPLLERKPKQLSGGQRQR 141
Score = 50.8 bits (119), Expect = 3e-05
Identities = 45/174 (25%), Positives = 77/174 (43%), Gaps = 22/174 (12%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGN----------------F 385
I+L+V + + F+G +G GKSTLL+ + GL +G +E F
Sbjct: 22 IDLEVNDKEFVVFVGPSGCGKSTLLRLIAGLEEVSEGTIELDGRDITEVTPAKRDLAMVF 81
Query: 386 QDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQ 445
Q A Y + L DL ++++ A AR+ +E + LSGG++
Sbjct: 82 QTYALYPHMSVRKNMSFAL-DLAGVDKQLVESKVNEA-ARILELGPLLERKPKQLSGGQR 139
Query: 446 AKLRFAKLMNTESNILILDEPTNHLD----VDAKEELKRALIEYPGTVLMVSHE 495
++ + + I + DEP ++LD V + EL R E T++ V+H+
Sbjct: 140 QRVAIGRAIVRNPKIFLFDEPLSNLDAALRVQMRLELARLHKELQATMIYVTHD 193
gb|AAD36138.1|AE001766_4 (AE001766) oligopeptide ABC transporter, ATP-binding protein
[Thermotoga maritima]
Length = 341
Score = 59.3 bits (141), Expect = 7e-08
Identities = 52/210 (24%), Positives = 93/210 (43%), Gaps = 35/210 (16%)
Query: 331 VIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---KGNFQD 387
V+GY + + I+ +E G+ + +G +G GK+T K +M I +GE+ G D
Sbjct: 24 VVGYLKAVDG-ISFHIEEGETLGLVGESGCGKTTTAKLIMRGIEPTEGEIVLNMDGEKVD 82
Query: 388 IAYY-EQEIKNPSQKTVLDDLW-DEYPSWN-------------------------QAELR 420
I E+E++ + L ++ D Y S N A +
Sbjct: 83 ITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTVRDIIAEPLVVNGVIKGKEEIDAIVS 142
Query: 421 GALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE--- 477
L VGL + ++ + SGG++ ++ A+ + + +++ DEPT+ LDV + +
Sbjct: 143 DLLRAVGLRPEYMQRYPHAFSGGQRQRIAIARAIALKPKLVLCDEPTSALDVSVQAQIIN 202
Query: 478 -LKRALIEYPGTVLMVSHEPEFYEGLVSDV 506
LK EY T L +SH+ E + + V
Sbjct: 203 LLKDLQKEYNLTYLFISHDLGVVEHITNRV 232
Score = 56.6 bits (134), Expect = 5e-07
Identities = 72/300 (24%), Positives = 124/300 (41%), Gaps = 39/300 (13%)
Query: 1 MSILNVKNLS-------HGFGDRAI-----FEDVSFRLLKGEHIGFVGANGEGKSTFMNI 48
M++L VKNL GF + + + +SF + +GE +G VG +G GK+T +
Sbjct: 1 MALLEVKNLKKYFPIIKRGFRRKVVGYLKAVDGISFHIEEGETLGLVGESGCGKTTTAKL 60
Query: 49 ITGTLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKM 108
I + P EG+++ + G L + + + + Q +F + M +
Sbjct: 61 IMRGIEPTEGEIVLNMD---GEKVDITKLSEKELREKGVRRFLQMIFQDPYSSLNPRMTV 117
Query: 109 AEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTP-LLDKDVAELSGGQR 167
++ + + + V + +EE IDA V + R +GL P + + SGGQR
Sbjct: 118 RDIIAEPL--VVNGVIKGKEE--------IDAIVSDLLRAVGLRPEYMQRYPHAFSGGQR 167
Query: 168 TKXXXXXXXXXXXXXXXXXXXTNYLD----EEHILWLKNYLKNYENAFILISHDVPFMDE 223
+ T+ LD + I LK+ K Y ++ ISHD+ ++
Sbjct: 168 QRIAIARAIALKPKLVLCDEPTSALDVSVQAQIINLLKDLQKEYNLTYLFISHDLGVVEH 227
Query: 224 VVNIIYHVHGLGITRYSMGYAEFERVFEE-KKAQLESLHNAQVAEQAKLKDFIARKKANV 282
+ N + ++ I AE E +F K E+L +A K K RKKA +
Sbjct: 228 ITNRVAVMYVGRIVE----LAETEELFSSPKHPYTEALLSAVPKPDPKRK----RKKAQL 279
gb|AAD36131.1|AE001765_10 (AE001765) ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 236
Score = 59.3 bits (141), Expect = 7e-08
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M +L +NL FG R + V+ +GE +G +G NG GK+T N+I G +VP GK+
Sbjct: 1 MDVLRCENLKKRFGRRYVVNGVNLEFHRGEIVGLLGPNGAGKTTIFNMILGVVVPTSGKI 60
Query: 61 IWS----------KKHRVG--YMDQHAVLGKGKTTRE 85
I+ ++ R+G Y+ Q + G T RE
Sbjct: 61 IFRDVDITKFPVYRRARLGITYLQQETSIFGGLTVRE 97
Score = 50.0 bits (117), Expect = 5e-05
Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQD-------------- 387
+NL+ G+ + +G NG GK+T+ ++G++ G++ F+D
Sbjct: 22 VNLEFHRGEIVGLLGPNGAGKTTIFNMILGVVVPTSGKII---FRDVDITKFPVYRRARL 78
Query: 388 -IAYYEQEIKNPSQKTVLDDL------WDEYPSWNQAELRGALARVGLTAKQIESR-VYV 439
I Y +QE TV +++ ++ + ++ L L K +E++
Sbjct: 79 GITYLQQETSIFGGLTVRENIDLVLRFHEKDKEKRERKIEELLHEFHL--KHLENQPASF 136
Query: 440 LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE 484
LSGGE+ KL A++M ++LDEP + +D +E+++ +E
Sbjct: 137 LSGGEKRKLELARMMCLNPAFILLDEPFSGIDPKTVKEIQKMTLE 181
dbj|BAA76609.1| (AB019003) MRP5 [Mus musculus]
Length = 1436
Score = 59.3 bits (141), Expect = 7e-08
Identities = 64/245 (26%), Positives = 116/245 (47%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP 337
KK AT G+ K + ++L E ++E+ K H +PS E K + G
Sbjct: 517 KKDKRATRGK-KEKSRQLQHTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKQIHTGSLRL 574
Query: 338 LSS--EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L++E G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLYNIDLEIEEGKLVGICGSVGSGKTSLVSAILGQMTLLEGSIAVSGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEFDEERYNSVLNSCCLRPDLAILPNSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKRLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
gb|AAF09790.1|AE001882_8 (AE001882) ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 354
Score = 58.9 bits (140), Expect = 9e-08
Identities = 52/183 (28%), Positives = 79/183 (42%), Gaps = 26/183 (14%)
Query: 336 EPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQDIAYYEQEI 395
+P +I+ + +G+ + ++G NG GKST +K L GL+ GEV G Q +
Sbjct: 59 KPAVQDISFSIPAGEIVGYLGPNGAGKSTTIKVLTGLLVPDSGEVRVGGLVPWKQRRQHV 118
Query: 396 KNP----SQKTVLDDLWDEYPSWNQAELRGALARV----------GLT-----AKQIESR 436
Q+T LW + P EL + RV G T + +
Sbjct: 119 ARLGAVFGQRTT---LWWDLPVRESLELLRHVYRVPAARFAENLAGFTELLELGPFLNTP 175
Query: 437 VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL----KRALIEYPGTVLMV 492
LS G++ + A + + +L LDEPT LDV AKE + K E TVL+
Sbjct: 176 ARALSLGQRMRADLAAALLHDPELLFLDEPTVGLDVVAKERIREFVKAVNAERGVTVLLT 235
Query: 493 SHE 495
+H+
Sbjct: 236 THD 238
Score = 57.4 bits (136), Expect = 3e-07
Identities = 24/58 (41%), Positives = 39/58 (66%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
++ V++L F + +D+SF + GE +G++G NG GKST + ++TG LVPD G+V
Sbjct: 46 MIEVRHLCKSFARKPAVQDISFSIPAGEIVGYLGPNGAGKSTTIKVLTGLLVPDSGEV 103
emb|CAA21355| (AL031866) ORF32, len:, 236 aa, hypothetical ABC transporter,
similar to many, eg: E. coli YBBA_ECOLI (228 aa), 44.0%
identity in 225 aa overlap, Fasta scores: opt: 611, E():
0 [Yersinia pestis]
Length = 237
Score = 58.9 bits (140), Expect = 9e-08
Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 28/235 (11%)
Query: 2 SILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVI 61
+++ ++L FG ED++ R+ +GE + +GA+G GK+T MNI+T EG+V+
Sbjct: 16 AVIETRHLYKRFGQVTALEDINIRINRGEFVAIMGASGSGKTTLMNILTCLDTVSEGQVL 75
Query: 62 WSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALE 121
G ++ G+ + + + FQ I Y+ ALE
Sbjct: 76 LDGIDAAGLDEE----GRRQFRADKIGLVFQQFHLI------PYL-----------TALE 114
Query: 122 NVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXX 181
N+ Q D + + +G+TP + ++LSGG++ +
Sbjct: 115 NIMLAQHYHSVVD----EEAARQVLEQVGMTPRMGHLPSQLSGGEQQRVCIARALVNQPP 170
Query: 182 XXXXXXXTNYLDEEH---ILWLKNYLKNYENAFILISHDVPFMDEVVNIIYHVHG 233
T LDEE+ +L L N++ ++++H+ +I HG
Sbjct: 171 IIFADEPTGNLDEENEQRVLELLNHIHRQGRTIVMVTHNPDLSCVADRVIRLQHG 225
Score = 58.2 bits (138), Expect = 2e-07
Identities = 58/206 (28%), Positives = 100/206 (48%), Gaps = 30/206 (14%)
Query: 319 KPSRL---VFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP 374
KP L V E + L + + + E IN+++ G+ +A +G++G GK+TL+ L L
Sbjct: 9 KPEHLADAVIETRHLYKRFGQVTALEDINIRINRGEFVAIMGASGSGKTTLMNILTCLDT 68
Query: 375 SLDGEV-----------EKGNFQ----DIAYYEQEIKNPSQKTVLDD--LWDEYPS-WNQ 416
+G+V E+G Q I Q+ T L++ L Y S ++
Sbjct: 69 VSEGQVLLDGIDAAGLDEEGRRQFRADKIGLVFQQFHLIPYLTALENIMLAQHYHSVVDE 128
Query: 417 AELRGALARVGLTAK--QIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDA 474
R L +VG+T + + S+ LSGGEQ ++ A+ + + I+ DEPT +LD +
Sbjct: 129 EAARQVLEQVGMTPRMGHLPSQ---LSGGEQQRVCIARALVNQPPIIFADEPTGNLDEEN 185
Query: 475 KE---ELKRALIEYPGTVLMVSHEPE 497
++ EL + T++MV+H P+
Sbjct: 186 EQRVLELLNHIHRQGRTIVMVTHNPD 211
gb|AAC68248.1| (AE001336) ABC Transporter ATPase [Chlamydia trachomatis]
Length = 239
Score = 58.9 bits (140), Expect = 9e-08
Identities = 49/170 (28%), Positives = 79/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MS+L+V NL + + + DVSF++ GE +G +G NG GK+T G + PD GK+
Sbjct: 1 MSVLSVCNLIKKYNKKPVTNDVSFQVNAGEIVGLLGPNGAGKTTAFYQTVGLIRPDSGKI 60
Query: 61 IWSKKHRVGY-MDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
++ MD A LG G +E T K + E+ +
Sbjct: 61 LFKNTDITKKPMDYRARLGIGYLAQE-----------------PTIFKELTVKEN-LICV 102
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
LE + + ++E +L++A +++ L LT L K LSGG+R +
Sbjct: 103 LEIIYKTRKE----QTHLLNALIDD----LQLTTSLHKKAGSLSGGERRR 144
Score = 49.6 bits (116), Expect = 6e-05
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
V +L+ YN+ P++++++ +V +G+ + +G NG GK+T +GLI G++
Sbjct: 3 VLSVCNLIKKYNKKPVTNDVSFQVNAGEIVGLLGPNGAGKTTAFYQTVGLIRPDSGKILF 62
Query: 383 GNFQ------------DIAYYEQEIKNPSQKTVLDDLWDEY-----PSWNQAELRGALAR 425
N I Y QE + TV ++L Q L AL
Sbjct: 63 KNTDITKKPMDYRARLGIGYLAQEPTIFKELTVKENLICVLEIIYKTRKEQTHLLNALID 122
Query: 426 VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
+ + LSGGE+ +L A ++ ++L+LDEP ++D
Sbjct: 123 DLQLTTSLHKKAGSLSGGERRRLEIACVLALNPSVLLLDEPFANVD 168
gi|1644364 (U72493) ATP binding protein [Chlamydia trachomatis]
Length = 257
Score = 58.9 bits (140), Expect = 9e-08
Identities = 49/170 (28%), Positives = 79/170 (45%), Gaps = 27/170 (15%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
MS+L+V NL + + + DVSF++ GE +G +G NG GK+T G + PD GK+
Sbjct: 1 MSVLSVCNLIKKYNKKPVTNDVSFQVNAGEIVGLLGPNGAGKTTAFYQTVGLIRPDSGKI 60
Query: 61 IWSKKHRVGY-MDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAA 119
++ MD A LG G +E T K + E+ +
Sbjct: 61 LFKNTDITKKPMDYRARLGIGYLAQE-----------------PTIFKELTVKEN-LICV 102
Query: 120 LENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTK 169
LE + + ++E +L++A +++ L LT L K LSGG+R +
Sbjct: 103 LEIIYKTRKE----QTHLLNALIDD----LQLTTSLHKKAGSLSGGERRR 144
Score = 49.6 bits (116), Expect = 6e-05
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 18/166 (10%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEK 382
V +L+ YN+ P++++++ +V +G+ + +G NG GK+T +GLI G++
Sbjct: 3 VLSVCNLIKKYNKKPVTNDVSFQVNAGEIVGLLGPNGAGKTTAFYQTVGLIRPDSGKILF 62
Query: 383 GNFQ------------DIAYYEQEIKNPSQKTVLDDLWDEY-----PSWNQAELRGALAR 425
N I Y QE + TV ++L Q L AL
Sbjct: 63 KNTDITKKPMDYRARLGIGYLAQEPTIFKELTVKENLICVLEIIYKTRKEQTHLLNALID 122
Query: 426 VGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
+ + LSGGE+ +L A ++ ++L+LDEP ++D
Sbjct: 123 DLQLTTSLHKKAGSLSGGERRRLEIACVLALNPSVLLLDEPFANVD 168
emb|CAB73271.1| (AL139077) branched-chain amino-acid ABC transport system
ATP-binding protein [Campylobacter jejuni]
Length = 256
Score = 58.2 bits (138), Expect = 2e-07
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 24/231 (10%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
IL +K +S FG + SF++ +GE +G NG GK+T NIITG P G V +
Sbjct: 2 ILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTLFNIITGNYKPSSGSVEF 61
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYL-----FDIEAQINDTYMKMAEMSEDEMN 117
+ R+ ++ H ++ G +A FQ + ++ + + K + + E
Sbjct: 62 LGE-RIDHLKPHKIVHLG------IARTFQNIRLFSSMNVLENVLIGFNKQMKYNIFEAF 114
Query: 118 AALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXX 177
L G++++ + +++ LG+ + LS GQ+ K
Sbjct: 115 LHLGRFGKIEQVFKEKAYAILEE--------LGIAEFAYEKATSLSYGQQRKVEIARAMA 166
Query: 178 XXXXXXXX---XXXTNYLDEEHILWLKNYL-KNYENAFILISHDVPFMDEV 224
N + + + L L K+Y+ + +LI HD+ F++++
Sbjct: 167 TQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKL 217
Score = 57.4 bits (136), Expect = 3e-07
Identities = 52/204 (25%), Positives = 86/204 (41%), Gaps = 36/204 (17%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE------------KGNFQD 387
+E + K+ G+ A IG NG GK+TL + G G VE K
Sbjct: 19 NETSFKINEGEIFALIGPNGAGKTTLFNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLG 78
Query: 388 IAYYEQEIKNPSQKTVLDDL---WDEYPSWNQAELRGALARVGLTAKQIESRVYV----- 439
IA Q I+ S VL+++ +++ +N E L R G + + + Y
Sbjct: 79 IARTFQNIRLFSSMNVLENVLIGFNKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEEL 138
Query: 440 ------------LSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALI---- 483
LS G+Q K+ A+ M T+ +L+LDEP ++ +EL +
Sbjct: 139 GIAEFAYEKATSLSYGQQRKVEIARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRK 198
Query: 484 EYPGTVLMVSHEPEFYEGLVSDVI 507
+Y +VL++ H+ +F L V+
Sbjct: 199 DYKISVLLIEHDMKFVNKLCDRVL 222
gb|AAF30300.1|AF162137_4 (AF229844) cystic fibrosis transmembrane conductance regulator [Mus
musculus]
Length = 1476
Score = 58.2 bits (138), Expect = 2e-07
Identities = 48/220 (21%), Positives = 106/220 (47%), Gaps = 14/220 (6%)
Query: 270 KLKDFIARKKA-----NVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLV 324
K++DF+ +++ N+ T+G + E + + + + D K S + +
Sbjct: 370 KIQDFLQKQEYKVLEYNLMTTGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVS 429
Query: 325 FEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KG 383
F LV P+ INL +E G+ +A GS G GK++LL ++G + + +G ++ G
Sbjct: 430 FSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 486
Query: 384 NFQDIAYYEQEIKNPSQKTVLDDL-WDEYPSWNQAELRGALARVGLTAKQIESRV----Y 438
+ + + ++ ++ + +DEY + + + A+Q + +
Sbjct: 487 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 546
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
LSGG++A++ A+ + ++++ +LD P +LDV +E++
Sbjct: 547 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 586
Score = 55.0 bits (130), Expect = 1e-06
Identities = 48/202 (23%), Positives = 93/202 (45%), Gaps = 25/202 (12%)
Query: 320 PSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSL 376
PS KDL + Y + + I+ + GQ++ +G G GKSTLL + + ++ ++
Sbjct: 1201 PSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRML-NI 1259
Query: 377 DGEVE----KGNFQDIAYYEQEIKNPSQKTVL-----------DDLWDEYPSWNQAELRG 421
G++E N + + + +QK + + W + W A+ G
Sbjct: 1260 KGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADEVG 1319
Query: 422 ALARVGLTAKQIESRV----YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ + Q+ + YVLS G + + A+ + +++ I++LDEP+ HLD +
Sbjct: 1320 LKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSAHLDPITYQV 1379
Query: 478 LKRALIE-YPG-TVLMVSHEPE 497
++R L + + G TV++ H E
Sbjct: 1380 IRRVLKQAFAGCTVILCEHRIE 1401
dbj|BAA88897.1| (AB020209) multidrug resistance protein (MRP5) [Rattus norvegicus]
Length = 1436
Score = 58.2 bits (138), Expect = 2e-07
Identities = 63/245 (25%), Positives = 115/245 (46%), Gaps = 20/245 (8%)
Query: 278 KKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEP 337
KK A G+ K + ++L E ++E+ K H +PS E K + G
Sbjct: 517 KKDKRAPKGK-KEKSRQLQHTEHQAVLAEQ-KGHLLLDSDERPSPEEEEGKQIHAGSMRL 574
Query: 338 LSS--EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQE 394
+ I+L++E G+ + GS G GK++L+ +++G + L+G + G F +A
Sbjct: 575 QRTLYNIDLEIEEGKLVGICGSVGSGKTSLISAILGQMTLLEGSIAVSGTFAYVAQQAWI 634
Query: 395 IKNPSQKTVL-DDLWDE--YPS-WNQAELRGALARV-GLTAKQIESRVYVLSGGEQAKLR 449
+ + +L +DE Y S N LR LA + +I R LSGG++ ++
Sbjct: 635 LNATLRDNILFGKEFDEERYNSVLNSCCLRPDLAILPNSDLTEIGERGANLSGGQRQRIS 694
Query: 450 FAKLMNTESNILILDEPTNHLDVDAKEELKRALIE---YPGTVLMVSHEPEFYEGLVSDV 506
A+ + ++ +I ILD+P + LD + + I TVL V+H+ ++ +
Sbjct: 695 LARALYSDRSIYILDDPLSALDAHVGNHIFNSAIRKRLKSKTVLFVTHQLQY-------L 747
Query: 507 INCEE 511
++C+E
Sbjct: 748 VDCDE 752
gb|AAF09986.1|AE001901_1 (AE001901) ABC transporter, ATP-binding protein [Deinococcus
radiodurans]
Length = 213
Score = 58.2 bits (138), Expect = 2e-07
Identities = 54/187 (28%), Positives = 89/187 (46%), Gaps = 20/187 (10%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGE--------VEKGNFQDIAYYE 392
++ L + G+ A G NG GK+TLL+ + GL+ + GE +K + ++ ++
Sbjct: 27 DVTLDLRPGEVAALFGGNGAGKTTLLRVVAGLLSASRGEGRVFGYDLKDKRSVREHVFFM 86
Query: 393 QE----IKNPSQKTVLDDLWDEYP-SWNQAELRGALARVGLTAKQIESRVYVLSGGEQAK 447
E + + LD Y + AEL L RVGL A R LS G + +
Sbjct: 87 TEGGGLYGDLTATENLDFTARMYGLTAPSAEL---LERVGLGA-AANKRARDLSSGMRKR 142
Query: 448 LRFAKLMNTESNILILDEPTNHLDVDAKEEL---KRALIEYPGTVLMVSHEPEFYEGLVS 504
L+ A+++ S +L+LDEP +LD K+ + RA + T+L SHEPE + +
Sbjct: 143 LQLARMLLAPSPLLLLDEPFANLDAGGKDAVLTHLRAAQDAGKTILFSSHEPELAGQVAT 202
Query: 505 DVINCEE 511
+ E+
Sbjct: 203 RTLTLEQ 209
gb|AAD37835.1|AF104349_1 (AF104349) ABC transporter ZurA [Listeria monocytogenes]
Length = 257
Score = 58.2 bits (138), Expect = 2e-07
Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 27/211 (12%)
Query: 324 VFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-- 380
+ E ++ Y++ + E I+ +V G IG NG GKST+LK ++G++ G +
Sbjct: 4 IIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSISL 63
Query: 381 ---EKGNFQD---IAYYEQE-----------IKN--PSQKTVLDDLWDEYPSWNQAELRG 421
++ +F+D I + Q+ +K S T L+ + ++ ++
Sbjct: 64 FGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASGLTKKKGLFKTLNNKDKEDIDY 123
Query: 422 ALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRA 481
AL RV +T + + LSGG+Q ++ A+ + + +LILDEPT +DV+ +
Sbjct: 124 ALKRVEMT-DYLHRNIGELSGGQQQRVFIARALVSRPELLILDEPTVGVDVENVKAFYEL 182
Query: 482 LIEY----PGTVLMVSHEPEFYEGLVSDVIN 508
L E T+L+V+H+ V+ VI+
Sbjct: 183 LAELNRTEEMTLLLVTHDLMAVNTYVNHVIS 213
Score = 57.4 bits (136), Expect = 3e-07
Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 3 ILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIW 62
I+ V N+S+ + E++ F++ KG G +G NG GKST + +I G L +G +
Sbjct: 4 IIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKSTMLKLILGVLKKQQGSISL 63
Query: 63 SKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALEN 122
+ + + D +G A AF A + E + +
Sbjct: 64 FGEKQADFKDW-VKIGFVSQKSNAFNSAFP----------------ATVKEVVASGLTKK 106
Query: 123 VGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXX 182
G L + L+N D ID ++ +T L +++ ELSGGQ+ +
Sbjct: 107 KG-LFKTLNNKDKEDIDYALKRVE----MTDYLHRNIGELSGGQQQRVFIARALVSRPEL 161
Query: 183 XXXXXXTNYLDEEHILWLKNYL----KNYENAFILISHDVPFMDEVVNIIYHVH 232
T +D E++ L + E +L++HD+ ++ VN + ++
Sbjct: 162 LILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISIN 215
gi|2984331 (AE000774) ABC transporter [Aquifex aeolicus]
Length = 305
Score = 58.2 bits (138), Expect = 2e-07
Identities = 43/154 (27%), Positives = 75/154 (47%), Gaps = 16/154 (10%)
Query: 341 EINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---KGNFQDIAYYEQEIK- 396
E++L ++ G +A +G +G GKSTL K ++ L G+V K F Y +++
Sbjct: 30 EVSLSIKQGDFLAIVGESGSGKSTLGKIILRLEKPTKGKVSFKGKDIFSMGKEYTRKVSA 89
Query: 397 ---------NPSQKT--VLDD-LWDEYPSWNQAELRGALARVGLTAKQIESRVYVLSGGE 444
NP K +L++ L + + L RV L+ + +E R +SGG+
Sbjct: 90 VFQDPRSSLNPRMKVEEILEEPLIVHRVKGRKERVLKVLQRVRLSEELLEKRPLQISGGQ 149
Query: 445 QAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
++ A+ + E +++ DEPT LDV +EE+
Sbjct: 150 AQRVAIARALILEPELIVADEPTASLDVSVQEEI 183
Score = 49.2 bits (115), Expect = 8e-05
Identities = 58/240 (24%), Positives = 101/240 (41%), Gaps = 38/240 (15%)
Query: 1 MSILNVKNLSHGFGDRAIF---------EDVSFRLLKGEHIGFVGANGEGKSTFMNIITG 51
M +L+++NL+ + A F ++VS + +G+ + VG +G GKST II
Sbjct: 1 MELLSIQNLTKVYKVPAGFLRKKNFFALKEVSLSIKQGDFLAIVGESGSGKSTLGKIILR 60
Query: 52 TLVPDEGKVIWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEM 111
P +GKV + K + GK ++ FQ D + +N MK+ E+
Sbjct: 61 LEKPTKGKVSFKGKD---------IFSMGKEYTRKVSAVFQ---DPRSSLNPR-MKVEEI 107
Query: 112 SEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGLGLTPLLDKDVAELSGGQRTKXX 171
E+ + + V +E + KV + R LL+K ++SGGQ +
Sbjct: 108 LEEPL--IVHRVKGRKERV---------LKVLQRVR--LSEELLEKRPLQISGGQAQRVA 154
Query: 172 XXXXXXXXXXXXXXXXXTNYLD---EEHILWLKNYLKNYENAFILISHDVPFMDEVVNII 228
T LD +E IL L L + +F ++HD+ +++V N++
Sbjct: 155 IARALILEPELIVADEPTASLDVSVQEEILELFKELNSKGISFFFVTHDIRVVEKVANMV 214
gi|2621547 (AE000832) sulfate transport system ATP-binding [Methanobacterium
thermoautotrophicum]
Length = 348
Score = 58.2 bits (138), Expect = 2e-07
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 324 VFEAKDLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV-- 380
V E + Y + + ++NLKV G+ + IG G GKSTLL+ + L DGE+
Sbjct: 4 VIELSGITKSYGDIKVLEDVNLKVREGETLGIIGPTGAGKSTLLRIMDLLERPDDGEILF 63
Query: 381 EKGNFQDIAYYEQEIKNPS--------QKTVLDDLW------DEYPSWNQAELRGALARV 426
N D+ E + + TV + + E P +++E++ L +
Sbjct: 64 MGENVDDLKPLEVRRRMGMVFQNTPVFRGTVAESILYGPRIRGERP--HESEVKDVLETM 121
Query: 427 GLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYP 486
GL R LSGGE+ +L A+++ +++LDE T+ LD ++ ++ + E
Sbjct: 122 GLKGYG-SRRTTELSGGERQRLALAQVLINRPEVVLLDEATSSLDPISRSRMEDVIAELD 180
Query: 487 GTVLMVSHE 495
TV+ +H+
Sbjct: 181 VTVIFTTHD 189
Score = 50.0 bits (117), Expect = 5e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M ++ + ++ +GD + EDV+ ++ +GE +G +G G GKST + I+ PD+G++
Sbjct: 2 MHVIELSGITKSYGDIKVLEDVNLKVREGETLGIIGPTGAGKSTLLRIMDLLERPDDGEI 61
Query: 61 IW 62
++
Sbjct: 62 LF 63
pir||A40303 cystic fibrosis transmembrane conductance regulator - mouse
>gi|192832 (M60493) cystic fibrosis transmembrane
conductance regulator [Mus musculus]
Length = 1476
Score = 58.2 bits (138), Expect = 2e-07
Identities = 48/220 (21%), Positives = 106/220 (47%), Gaps = 14/220 (6%)
Query: 270 KLKDFIARKKA-----NVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLV 324
K++DF+ +++ N+ T+G + E + + + + D K S + +
Sbjct: 370 KIQDFLQKQEYKVLEYNLMTTGIIMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVS 429
Query: 325 FEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KG 383
F LV P+ INL +E G+ +A GS G GK++LL ++G + + +G ++ G
Sbjct: 430 FSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 486
Query: 384 NFQDIAYYEQEIKNPSQKTVLDDL-WDEYPSWNQAELRGALARVGLTAKQIESRV----Y 438
+ + + ++ ++ + +DEY + + + A+Q + +
Sbjct: 487 RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 546
Query: 439 VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEEL 478
LSGG++A++ A+ + ++++ +LD P +LDV +E++
Sbjct: 547 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 586
Score = 55.0 bits (130), Expect = 1e-06
Identities = 48/202 (23%), Positives = 93/202 (45%), Gaps = 25/202 (12%)
Query: 320 PSRLVFEAKDLVIGYNEP---LSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSL 376
PS KDL + Y + + I+ + GQ++ +G G GKSTLL + + ++ ++
Sbjct: 1201 PSGGEMVVKDLTVKYMDDGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRML-NI 1259
Query: 377 DGEVE----KGNFQDIAYYEQEIKNPSQKTVL-----------DDLWDEYPSWNQAELRG 421
G++E N + + + +QK + + W + W A+ G
Sbjct: 1260 KGDIEIDGVSWNSVTLQEWRKAFGVITQKVFIFSGTFRQNLDPNGKWKDEEIWKVADEVG 1319
Query: 422 ALARVGLTAKQIESRV----YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEE 477
+ + Q+ + YVLS G + + A+ + +++ I++LDEP+ HLD +
Sbjct: 1320 LKSVIEQFPGQLNFTLVDGGYVLSHGHKQLMCLARSVLSKAKIILLDEPSAHLDPITYQV 1379
Query: 478 LKRALIE-YPG-TVLMVSHEPE 497
++R L + + G TV++ H E
Sbjct: 1380 IRRVLKQAFAGCTVILCEHRIE 1401
gb|AAD36105.1|AE001764_8 (AE001764) ABC transporter, ATP-binding protein [Thermotoga
maritima]
Length = 293
Score = 57.8 bits (137), Expect = 2e-07
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 324 VFEAKDLVIGYNEPLSSE-INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE- 381
V E +DL Y + E + VE G+ FIG NG GK+T ++ L+GLI G E
Sbjct: 3 VVEVRDLTKYYGKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSGLAEI 62
Query: 382 ---------KGNFQDIAYYEQEIKNPSQKTVLDDLWDEYPSWNQAELRGALARVGLTAKQ 432
K +++ Y E+ + TV + L + + + G+ +
Sbjct: 63 FGKDVLKEGKEIRKNVGYIPGEVSFYPEVTVEEFLRYSASFYEKVDWDYVKELCGVFSLD 122
Query: 433 IESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
+ R+ LS G + K+ + + +LILDEPTN LD
Sbjct: 123 TKKRIKELSMGNKKKVAIVQALMHRPKLLILDEPTNGLD 161
Score = 50.4 bits (118), Expect = 4e-05
Identities = 22/58 (37%), Positives = 37/58 (62%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEG 58
MS++ V++L+ +G E V+F + +GE GF+G NG GK+T + ++ G + PD G
Sbjct: 1 MSVVEVRDLTKYYGKSRGVEGVTFSVEEGEIFGFIGPNGAGKTTTIRLLLGLIFPDSG 58
dbj|BAA75300.1| (AB017508) ybxA homologue (identity of 50% to B. subtilis )
[Bacillus halodurans]
Length = 278
Score = 57.8 bits (137), Expect = 2e-07
Identities = 49/183 (26%), Positives = 90/183 (48%), Gaps = 27/183 (14%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--------EKGNFQDI 388
P+ EI++ V G+ +A IG NG GKSTL K L GL+ G V ++G +I
Sbjct: 20 PVLKEIDIHVPLGEWVAVIGPNGSGKSTLAKLLNGLLLPTSGRVTFNGMSTMDEGTHWEI 79
Query: 389 AYYEQEI----KNPSQK----TVLDDL--WDEYPSWNQAELRGALARVGLTA---KQIES 435
Q++ +NP + TV DDL E + + ++ + V + ++
Sbjct: 80 ---RQQVGLVFQNPEHQFVATTVRDDLAFGMENRGFPREKMIQRIEEVSIQVGIDHLLDE 136
Query: 436 RVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKE---ELKRALIEYPGTVLMV 492
+ LSGG++ ++ A ++ E ++++ DE T+ LD ++ E + L E T++ +
Sbjct: 137 EPHRLSGGQKQRVAIAGILAVEPSVIVFDEATSMLDPQGRKDVLETMKQLHENGMTIISI 196
Query: 493 SHE 495
+H+
Sbjct: 197 THD 199
Score = 57.4 bits (136), Expect = 3e-07
Identities = 48/204 (23%), Positives = 86/204 (41%), Gaps = 27/204 (13%)
Query: 18 IFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKVIWSKKHRVGYMDQHAVL 77
+ +++ + GE + +G NG GKST ++ G L+P G+V + + + MD+
Sbjct: 21 VLKEIDIHVPLGEWVAVIGPNGSGKSTLAKLLNGLLLPTSGRVTF---NGMSTMDE---- 73
Query: 78 GKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAALENVGELQEELDNSDFYL 137
G R+ + FQ N + +A D++ +EN G +E++
Sbjct: 74 GTHWEIRQQVGLVFQ---------NPEHQFVATTVRDDLAFGMENRGFPREKMIQ----- 119
Query: 138 IDAKVEETARGLGLTPLLDKDVAELSGGQRTKXXXXXXXXXXXXXXXXXXXTNYLD---E 194
++EE + +G+ LLD++ LSGGQ+ + T+ LD
Sbjct: 120 ---RIEEVSIQVGIDHLLDEEPHRLSGGQKQRVAIAGILAVEPSVIVFDEATSMLDPQGR 176
Query: 195 EHILWLKNYLKNYENAFILISHDV 218
+ +L L I I+HDV
Sbjct: 177 KDVLETMKQLHENGMTIISITHDV 200
gb|AAD18862| (AE001653) ABC Transporter ATPase [Chlamydia pneumoniae]
Length = 240
Score = 57.8 bits (137), Expect = 2e-07
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M IL+V NL + + + DVSF++ GE +G +G NG GK+T + G + PD GK+
Sbjct: 1 MPILSVCNLVKKYNKKPVTNDVSFQINPGEIVGLLGPNGAGKTTAFYLTVGLIRPDSGKI 60
Query: 61 IW-----SKK---HR----VGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQ 100
I+ +KK HR +GY+ Q + K T ++ L + ++ Q
Sbjct: 61 IFKNVDVTKKTMDHRARLGIGYLAQEPTIFKELTVQDNLICILEIIYKARKQ 112
Score = 48.4 bits (113), Expect = 1e-04
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 329 DLVIGYNE-PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ- 386
+LV YN+ P++++++ ++ G+ + +G NG GK+T +GLI G++ N
Sbjct: 8 NLVKKYNKKPVTNDVSFQINPGEIVGLLGPNGAGKTTAFYLTVGLIRPDSGKIIFKNVDV 67
Query: 387 -----------DIAYYEQEIKNPSQKTVLDDL-----WDEYPSWNQAELRGALARVGLTA 430
I Y QE + TV D+L Q+ L L
Sbjct: 68 TKKTMDHRARLGIGYLAQEPTIFKELTVQDNLICILEIIYKARKQQSHLLNTLVDDLQLG 127
Query: 431 KQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLD 471
+ + LSGGE+ +L A ++ ++L+LDEP ++D
Sbjct: 128 SCLHKKAGTLSGGERRRLEIACVLALNPSVLLLDEPFANVD 168
emb|CAA14960| (AJ235272) ABC TRANSPORTER ATP-BINDING PROTEIN (abcT2) [Rickettsia
prowazekii]
Length = 254
Score = 57.8 bits (137), Expect = 2e-07
Identities = 44/179 (24%), Positives = 86/179 (47%), Gaps = 18/179 (10%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M L +KN+S + R I D+S + +GE +G G NG GK+T NII G + PD G++
Sbjct: 15 MDSLQIKNISKSYKKRNILTDISLHIKQGEIVGLFGPNGAGKTTCFNIIIGLMRPDSGQL 74
Query: 61 IWS------------KKHRVGYMDQHAVLGKGKTTREALAEAFQYLFD----IEAQINDT 104
+ + + +GY+ Q + +G + + + + + IE + ++
Sbjct: 75 LLNDINITNLPIYLRARLGIGYLLQEPSIFRGLSVADNIKAVVEISENDKEVIEQKTHNL 134
Query: 105 YMKMAEMSEDEMNAALENVGELQEELDNSDFYLIDAKVEETARGL-GLTPLLDKDVAEL 162
K + + ++++A + GE + L+ + ++I+ K L G+ PL D+ +L
Sbjct: 135 LEKFSIVHLKDLSSASLSGGE-RRRLEIARSFVIEPKFIMLDEPLAGIDPLAISDIKKL 192
emb|CAA75729| (Y15635) ABCR [Homo sapiens]
Length = 2273
Score = 57.8 bits (137), Expect = 2e-07
Identities = 63/247 (25%), Positives = 100/247 (39%), Gaps = 27/247 (10%)
Query: 274 FIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPH---FDFKFSRK-----PSRLVF 325
F+ ++ ++ G + E+ L K E + +E P+ D F R+ P V
Sbjct: 873 FLLQESYWLSGEGCSTREERALEKTEPLTEETEDPEHPEGIHDSFFEREHPGWVPGVCVK 932
Query: 326 EAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF 385
+ P +N+ Q AF+G NG GK+T L L GL+P G V G
Sbjct: 933 NLVKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGR 992
Query: 386 Q---DIAYYEQEIKNPSQKTVL-------------DDLWDEYPSWNQAELRGALARVGLT 429
+ Q + Q +L L + Q E+ L GL
Sbjct: 993 DIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLH 1052
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG-- 487
K+ E LSGG Q KL A ++ ++ILDEPT+ +D ++ + L++Y
Sbjct: 1053 HKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRSGR 1111
Query: 488 TVLMVSH 494
T++M +H
Sbjct: 1112 TIIMSTH 1118
Score = 46.1 bits (107), Expect = 7e-04
Identities = 50/195 (25%), Positives = 78/195 (39%), Gaps = 18/195 (9%)
Query: 326 EAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---K 382
E + +G + P + + V G+ +G NG GK+T K L G G+ K
Sbjct: 1942 ELTKIYLGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGK 2001
Query: 383 GNFQDIAYYEQEIKNPSQKTVLDD-LWDEYPSWNQAELRGALAR-----VGLTAKQIESR 436
+I+ Q + Q +D+ L + A LRG A + K +
Sbjct: 2002 SILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLT 2061
Query: 437 VY------VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR---ALIEYPG 487
VY SGG + KL A + +++LDEPT +D A+ L ++I
Sbjct: 2062 VYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIREGR 2121
Query: 488 TVLMVSHEPEFYEGL 502
V++ SH E E L
Sbjct: 2122 AVVLTSHSMEECEAL 2136
ref|NP_000341.1|| ATP binding cassette transporter >gi|1888527 (U88667) ATP-binding
cassette transporter [Homo sapiens]
Length = 2273
Score = 57.8 bits (137), Expect = 2e-07
Identities = 63/247 (25%), Positives = 100/247 (39%), Gaps = 27/247 (10%)
Query: 274 FIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPH---FDFKFSRK-----PSRLVF 325
F+ ++ ++ G + E+ L K E + +E P+ D F R+ P V
Sbjct: 873 FLLQESYWLSGEGCSTREERALEKTEPLTEETEDPEHPEGIHDSFFEREHPGWVPGVCVK 932
Query: 326 EAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNF 385
+ P +N+ Q AF+G NG GK+T L L GL+P G V G
Sbjct: 933 NLVKIFEPCGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGR 992
Query: 386 Q---DIAYYEQEIKNPSQKTVL-------------DDLWDEYPSWNQAELRGALARVGLT 429
+ Q + Q +L L + Q E+ L GL
Sbjct: 993 DIETSLDAVRQSLGMCPQHNILFHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLH 1052
Query: 430 AKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG-- 487
K+ E LSGG Q KL A ++ ++ILDEPT+ +D ++ + L++Y
Sbjct: 1053 HKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRSGR 1111
Query: 488 TVLMVSH 494
T++M +H
Sbjct: 1112 TIIMPTH 1118
Score = 46.1 bits (107), Expect = 7e-04
Identities = 50/195 (25%), Positives = 78/195 (39%), Gaps = 18/195 (9%)
Query: 326 EAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE---K 382
E + +G + P + + V G+ +G NG GK+T K L G G+ K
Sbjct: 1942 ELTKIYLGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGK 2001
Query: 383 GNFQDIAYYEQEIKNPSQKTVLDD-LWDEYPSWNQAELRGALAR-----VGLTAKQIESR 436
+I+ Q + Q +D+ L + A LRG A + K +
Sbjct: 2002 SILTNISEVHQNMGYCPQFDAIDELLTGREHLYLYARLRGVPAEEIEKVANWSIKSLGLT 2061
Query: 437 VY------VLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKR---ALIEYPG 487
VY SGG + KL A + +++LDEPT +D A+ L ++I
Sbjct: 2062 VYADCLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSIIRKGR 2121
Query: 488 TVLMVSHEPEFYEGL 502
V++ SH E E L
Sbjct: 2122 AVVLTSHSMEECEAL 2136
sp|P41076|GLTL_ECOLI GLUTAMATE/ASPARTATE TRANSPORT ATP-BINDING PROTEIN GLTL >gi|624632
(U10981) GltL [Escherichia coli]
>gi|1651271|dbj|BAA35304| (D90705) Glutamate/aspartate
transport atp-binding protein gltL. [Escherichia coli]
>gi|1778570 (U82598) glutamate/aspartate transport
ATP-binding protein [Escherichia coli] >gi|1786872
(AE000169) ATP-binding protein of glutamate/aspartate
transport system [Escherichia coli]
Length = 241
Score = 57.8 bits (137), Expect = 2e-07
Identities = 51/197 (25%), Positives = 96/197 (47%), Gaps = 28/197 (14%)
Query: 340 SEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIP------SLDGEVEKGNFQDIAYYEQ 393
++ + +V+ G+ + G +G GKSTL+K++ GL P ++DG V D+A
Sbjct: 18 TDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRS 77
Query: 394 EIKNPSQK-------TVLDDLW---------DEYPSWNQAELRGALARVGLTAKQIESRV 437
+ Q +++++L D+ P+ +A L RVGL+A +
Sbjct: 78 RVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKA--LKLLERVGLSAHANKFPA 135
Query: 438 YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIEYPG---TVLMVSH 494
LSGG+Q ++ A+ + + ++ DEPT+ LD + E+ ++E T+++V+H
Sbjct: 136 Q-LSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMVELANEGMTMMVVTH 194
Query: 495 EPEFYEGLVSDVINCEE 511
E F + + VI +E
Sbjct: 195 EMGFARKVANRVIFMDE 211
sp|P32721|ALSA_ECOLI D-ALLOSE TRANSPORT ATP-BINDING PROTEIN ALSA >gi|1361038|pir||S56315
hypothetical protein 510 - Escherichia coli >gi|536931
(U14003) ORF_f510 [Escherichia coli] >gi|1790525
(AE000482) putative ATP-binding component of a transport
system [Escherichia coli]
Length = 510
Score = 57.8 bits (137), Expect = 2e-07
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ------------DIA 389
+NL V G+ A +G NG GKSTL+K L G+ G + N I
Sbjct: 24 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQLGIG 83
Query: 390 YYEQEIKNPSQKTVLDDLW-----------DEYPSWNQAELRGA--LARVGLTAKQIESR 436
QE+ + TVL++L+ W + +R A L RVGL ++ +
Sbjct: 84 IIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKV-DLDEK 142
Query: 437 VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL---DVDAKEELKRALIEYPGTVLMVS 493
V LS + L AK + ++ ++I+DEPT+ L +VD + L + ++ +S
Sbjct: 143 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS 202
Query: 494 HE 495
H+
Sbjct: 203 HK 204
Score = 49.2 bits (115), Expect = 8e-05
Identities = 57/231 (24%), Positives = 93/231 (39%), Gaps = 41/231 (17%)
Query: 324 VFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--- 380
VFE ++ V + +I+ V G+ + F G G G++ L+ L G+ GE+
Sbjct: 265 VFEVRN-VTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLN 323
Query: 381 -------------------------EKGNFQDIAYYE-----QEIKNPSQKTVLDDLWDE 410
+ G F + + + + +K+ K + L+ E
Sbjct: 324 GKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMG-LFHE 382
Query: 411 YPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
AE + L + L + + LSGG Q K+ +K + ++I DEPT +
Sbjct: 383 VDEQRTAENQREL--LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440
Query: 471 DVDAKEEL---KRALIEYPGTVLMVSHE-PEFYEGLVSDVINCEEWTTRIL 517
DV AK E+ R L + +LMVS E PE + CE T+IL
Sbjct: 441 DVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491
gi|396422 (U00006) matches PS00017: ATP/GTP-binding site motif A [Escherichia
coli]
Length = 502
Score = 57.8 bits (137), Expect = 2e-07
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 29/182 (15%)
Query: 342 INLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVEKGNFQ------------DIA 389
+NL V G+ A +G NG GKSTL+K L G+ G + N I
Sbjct: 16 VNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQLGIG 75
Query: 390 YYEQEIKNPSQKTVLDDLW-----------DEYPSWNQAELRGA--LARVGLTAKQIESR 436
QE+ + TVL++L+ W + +R A L RVGL ++ +
Sbjct: 76 IIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKV-DLDEK 134
Query: 437 VYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL---DVDAKEELKRALIEYPGTVLMVS 493
V LS + L AK + ++ ++I+DEPT+ L +VD + L + ++ +S
Sbjct: 135 VANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYIS 194
Query: 494 HE 495
H+
Sbjct: 195 HK 196
Score = 49.2 bits (115), Expect = 8e-05
Identities = 57/231 (24%), Positives = 93/231 (39%), Gaps = 41/231 (17%)
Query: 324 VFEAKDLVIGYNEPLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEV--- 380
VFE ++ V + +I+ V G+ + F G G G++ L+ L G+ GE+
Sbjct: 257 VFEVRN-VTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLN 315
Query: 381 -------------------------EKGNFQDIAYYE-----QEIKNPSQKTVLDDLWDE 410
+ G F + + + + +K+ K + L+ E
Sbjct: 316 GKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMG-LFHE 374
Query: 411 YPSWNQAELRGALARVGLTAKQIESRVYVLSGGEQAKLRFAKLMNTESNILILDEPTNHL 470
AE + L + L + + LSGG Q K+ +K + ++I DEPT +
Sbjct: 375 VDEQRTAENQREL--LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 432
Query: 471 DVDAKEEL---KRALIEYPGTVLMVSHE-PEFYEGLVSDVINCEEWTTRIL 517
DV AK E+ R L + +LMVS E PE + CE T+IL
Sbjct: 433 DVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 483
gi|1669378 (AC000061) coded for by human cDNA M96936 (NID:g180293) [Homo
sapiens]
Length = 423
Score = 57.4 bits (136), Expect = 3e-07
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 274 FIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIG 333
FI T + +L+K+ I+E K K PS KDL
Sbjct: 170 FIDMPTEGKPTKSTKPYKNGQLSKVMIIENSHVK-------KDDIWPSGGQMTVKDLTAK 222
Query: 334 YNE---PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIA 389
Y E + I+ + GQ++ +G G GKSTLL + + L+ + +GE++ G D
Sbjct: 223 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSI 281
Query: 390 YYEQEIKN----PSQKTVLDDLW----DEYPSWNQAELRGALARVGLTA--KQIESRV-- 437
+Q K P + + + D Y W+ E+ VGL + +Q ++
Sbjct: 282 TLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDF 341
Query: 438 ------YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE--YPGTV 489
VLS G + + A+ + +++ IL+LDEP+ HLD + ++R L + TV
Sbjct: 342 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 401
Query: 490 LMVSHEPE 497
++ H E
Sbjct: 402 ILCEHRIE 409
gi|1669377 (AC000061) cystic fibrosis transmembrane conductance regulator
[Homo sapiens]
Length = 484
Score = 57.4 bits (136), Expect = 3e-07
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 274 FIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIG 333
FI T + +L+K+ I+E K K PS KDL
Sbjct: 170 FIDMPTEGKPTKSTKPYKNGQLSKVMIIENSHVK-------KDDIWPSGGQMTVKDLTAK 222
Query: 334 YNE---PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIA 389
Y E + I+ + GQ++ +G G GKSTLL + + L+ + +GE++ G D
Sbjct: 223 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSI 281
Query: 390 YYEQEIKN----PSQKTVLDDLW----DEYPSWNQAELRGALARVGLTA--KQIESRV-- 437
+Q K P + + + D Y W+ E+ VGL + +Q ++
Sbjct: 282 TLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDF 341
Query: 438 ------YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE--YPGTV 489
VLS G + + A+ + +++ IL+LDEP+ HLD + ++R L + TV
Sbjct: 342 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 401
Query: 490 LMVSHEPE 497
++ H E
Sbjct: 402 ILCEHRIE 409
pir||B64458 high-affinity branched-chain amino acid transport ATP-binding
protein homolog - Methanococcus jannaschii >gi|1591902
(U67567) high-affinity branched-chain amino acid
transport ATP-binding protein (braF) [Methanococcus
jannaschii]
Length = 257
Score = 57.4 bits (136), Expect = 3e-07
Identities = 55/178 (30%), Positives = 77/178 (42%), Gaps = 36/178 (20%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60
M IL +N+ FG+ + VS + KG+ +G NG GKST +N+ITG L DEG+V
Sbjct: 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 64
Query: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120
+ K T + AE + Y + T + EM+ L
Sbjct: 65 YFENK---------------DITNKEPAELYHYGI---VRTFQTPQPLKEMT------VL 100
Query: 121 EN--VGELQ--EELDNSDFYL--------IDAKVEETARGLGLTPLLDKDVAELSGGQ 166
EN +GE+ E NS FY + K + L L+ L D+ ELSGGQ
Sbjct: 101 ENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQ 158
pir||A64455 methyl coenzyme M reductase system, component A2 - Methanococcus
jannaschii >gi|1592327 (U67565) methyl coenzyme M
reductase system, component A2 (atwA) [Methanococcus
jannaschii]
Length = 539
Score = 57.4 bits (136), Expect = 3e-07
Identities = 28/76 (36%), Positives = 49/76 (63%), Gaps = 4/76 (5%)
Query: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGT--LVPDEG 58
M +L VKN++ FGD+ + +++SF L +GE +G +G +G GKS ++++ G P EG
Sbjct: 6 MMLLEVKNVTKKFGDKVVLKNISFTLEEGESLGILGKSGAGKSVLLHMLRGMDGYEPTEG 65
Query: 59 KVIW--SKKHRVGYMD 72
++I+ S + GY+D
Sbjct: 66 QIIYHVSYCEKCGYVD 81
Score = 52.3 bits (123), Expect = 9e-06
Identities = 52/233 (22%), Positives = 104/233 (44%), Gaps = 33/233 (14%)
Query: 299 EIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIGYNEPLSS--EINLKVESGQKIAFIG 356
+ +ET+ E KP + + +L +K + + + L + + +G
Sbjct: 266 KFMETVKEFKKPETEVEIKEDIIKLENVSKHYCSVERGVIKAVDNVTLNIREREIFGLVG 325
Query: 357 SNGIGKSTLLKSLMGLIP-----------------SLDGEVEKGNFQD-IAYYEQEIKNP 398
++G GK+TL K + G++P + G + +G + I QE
Sbjct: 326 TSGAGKTTLAKIIAGVLPPSKGKYWFRVGDEWVDMTKPGPMGRGRAKRYIGILFQEYALY 385
Query: 399 SQKTVLDDLWD----EYP-SWNQAELRGALARVGLTAKQIESRV----YVLSGGEQAKLR 449
+T+L++L + E P + + + L VG + ++ E + + LS GE+ +
Sbjct: 386 PHRTILENLTEAIGLELPDEFARMKAVYTLVSVGFSEEEAEEILDKYPHELSVGERHRCA 445
Query: 450 FAKLMNTESNILILDEPTNHLDVDAK----EELKRALIEYPGTVLMVSHEPEF 498
A+++ E ++ILDEPT +D + E + ++ IE T ++VSH+ +F
Sbjct: 446 LAQVLIKEPRVVILDEPTGTMDPITRNTVAESIHKSRIELEQTYIIVSHDMDF 498
gi|180332 (M28668) cystic fibrosis transmembrane conductance regulator [Homo
sapiens]
Length = 1480
Score = 57.4 bits (136), Expect = 3e-07
Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 32/248 (12%)
Query: 274 FIARKKANVATSGQAKAREKKLAKMEIVETISEKPKPHFDFKFSRKPSRLVFEAKDLVIG 333
FI T + +L+K+ I+E K K PS KDL
Sbjct: 1166 FIDMPTEGKPTKSTKPYKNGQLSKVMIIENSHVK-------KDDIWPSGGQMTVKDLTAK 1218
Query: 334 YNE---PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIA 389
Y E + I+ + GQ++ +G G GKSTLL + + L+ + +GE++ G D
Sbjct: 1219 YTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSWDSI 1277
Query: 390 YYEQEIKN----PSQKTVLDDLW----DEYPSWNQAELRGALARVGLTA--KQIESRV-- 437
+Q K P + + + D Y W+ E+ VGL + +Q ++
Sbjct: 1278 TLQQWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDQEIWKVADEVGLRSVIEQFPGKLDF 1337
Query: 438 ------YVLSGGEQAKLRFAKLMNTESNILILDEPTNHLDVDAKEELKRALIE--YPGTV 489
VLS G + + A+ + +++ IL+LDEP+ HLD + ++R L + TV
Sbjct: 1338 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 1397
Query: 490 LMVSHEPE 497
++ H E
Sbjct: 1398 ILCEHRIE 1405
Score = 56.6 bits (134), Expect = 5e-07
Identities = 36/148 (24%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Query: 337 PLSSEINLKVESGQKIAFIGSNGIGKSTLLKSLMGLIPSLDGEVE-KGNFQDIAYYEQEI 395
P+ +IN K+E GQ +A GS G GK++LL +MG + +G+++ G + + +
Sbjct: 439 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 498
Query: 396 KNPSQKTVLDDL-WDEYPSWNQAELRGALARVGLTAKQ----IESRVYVLSGGEQAKLRF 450
++ ++ + +DEY + + + A++ + LSGG++A++
Sbjct: 499 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 558
Query: 451 AKLMNTESNILILDEPTNHLDVDAKEEL 478
A+ + ++++ +LD P +LDV ++E+
Sbjct: 559 ARAVYKDADLYLLDSPFGYLDVLTEKEI 586
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.315 0.135 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134282607
Number of Sequences: 457798
Number of extensions: 5509428
Number of successful extensions: 23472
Number of sequences better than 1.0e-02: 1354
Number of HSP's better than 0.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 828
Number of HSP's that attempted gapping in prelim test: 19199
Number of HSP's gapped (non-prelim): 3933
length of query: 517
length of database: 140,871,481
effective HSP length: 60
effective length of query: 457
effective length of database: 113,403,601
effective search space: 51825445657
effective search space used: 51825445657
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 98 (42.6 bits)