BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= uxaC (1674 kb reverse) BIO06.12
(472 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|2612902 (AF015825) hypothetical uronate isomerase [Bacil... 445 e-124
sp|P42607|UXAC_ECOLI URONATE ISOMERASE (GLUCURONATE ISOMERA... 433 e-120
gb|AAC98133.1| (AF098273) uronate isomerase [Bacillus stear... 356 3e-97
gb|AAD35158.1|AE001693_4 (AE001693) uronate isomerase, puta... 282 6e-75
gb|AAA57896.1| (U18997) ORF_f352 [Escherichia coli] 279 3e-74
gb|AAA57895.1| (U18997) ORF_f86; overlaps f352 by 17 bases,... 80 5e-14
gb|AAA57894.1| (U18997) ORF_f62; overlaps f86 by 8 bases, n... 78 2e-13
gi|2612902 (AF015825) hypothetical uronate isomerase [Bacillus subtilis]
>gi|2633584|emb|CAB13087| (Z99110) similar to
glucuronate isomerase [Bacillus subtilis]
Length = 473
Score = 445 bits (1132), Expect = e-124
Identities = 217/472 (45%), Positives = 307/472 (64%), Gaps = 6/472 (1%)
Query: 3 FLSEDFLLTNESAKMLFHKHAEKMPIIDYHCHLEPAEIYENKKYENLTQIWLGGDHYKWR 62
F+ ++FLL NE+A L+H +A+ MPIIDYHCHL P EIYENK ++N+T+ WL GDHYKWR
Sbjct: 4 FMGKNFLLKNETAVSLYHNYAKDMPIIDYHCHLSPKEIYENKTFQNITEAWLYGDHYKWR 63
Query: 63 LLRANGIPEKLITGDGEDYEKFLAFAKTLEKSFGNPIYEWTHLELKRFFHIDKLISSETA 122
++RANGI E ITGD D EKF+A+AKT+ + GNP+Y WTHLEL+RFF I ++++ ++
Sbjct: 64 IMRANGIEETYITGDAPDEEKFMAWAKTVPMAIGNPLYNWTHLELQRFFGIYEILNEKSG 123
Query: 123 KEIWDEANQMLATDDFRPRALIKNSQVKVVCTTDDPVSTLSYHKLLAKEEKDF--KVLPA 180
IW + N++L + F R LI S VKVVCTTDDPV +L YH LL KE+KDF VLP
Sbjct: 124 SAIWKQTNKLLKGEGFGARDLIVKSNVKVVCTTDDPVDSLEYH-LLLKEDKDFPVSVLPG 182
Query: 181 LRPDHLISITDGHFADYLTELSAVSGIEIKGFKTMIKALEQRFEFFTSLGGRLSDHSLST 240
RPD + I F +++ L + I I + +KALE+R FF S GGR+SDH++ T
Sbjct: 183 FRPDKGLEINREGFPEWVQALEDAAAISITTYDEFLKALEKRVRFFHSAGGRVSDHAIDT 242
Query: 241 YTFAETKNVDLDSILQKAKENQTLTDLEYNQYITALILEIMKLNKKFEWTMQLHVNVNRS 300
FAET + I + ++ + ++ T + + L + +W MQ H+N R+
Sbjct: 243 MVFAETTKEEAGRIFSDRLQGTEVSCEDEKKFKTYTLQFLCGLYAELDWAMQFHINALRN 302
Query: 301 INGPALSKIGENTGFDSMGTQANISEELTKLFSKAAELETIPKTILYSLNQNDWLELVTM 360
N + ++G +TG+DSM + I++ L KL + +PKTILYSLN ND + +M
Sbjct: 303 TNTKMMKRLGPDTGYDSMNDE-EIAKPLYKLLNSVEMKNQLPKTILYSLNPNDNYVIASM 361
Query: 361 IGCFQ-GEGVQQLQLGAGWWFNDTKKGMENQLEIFASQSLLSNFVGMLTDSRSFLSYPRH 419
I FQ G ++Q G WWFNDTK GM +Q++ ++ L S F+GMLTDSRSFLSY RH
Sbjct: 362 INSFQDGITPGKIQFGTAWWFNDTKDGMLDQMKALSNVGLFSRFIGMLTDSRSFLSYTRH 421
Query: 420 EYFRRVLCNFVGQLIENGRIPDNEALVGKMIEDISYNNVHDYFGFFKDEDSN 471
EYFRR++CN +G+ +ENG +P + L+G +++ I Y+N YF F++E +N
Sbjct: 422 EYFRRIVCNLIGEWVENGEVPRDMELLGSIVQGICYDNAKHYFQ-FQEEKAN 472
sp|P42607|UXAC_ECOLI URONATE ISOMERASE (GLUCURONATE ISOMERASE) (URONIC ISOMERASE)
>gi|1160318|dbj|BAA02587| (D13328) Uronate isomerase
[Escherichia coli] >gi|2367192 (AE000391) uronate
isomerase [Escherichia coli]
Length = 470
Score = 433 bits (1102), Expect = e-120
Identities = 218/463 (47%), Positives = 301/463 (64%), Gaps = 4/463 (0%)
Query: 3 FLSEDFLLTNESAKMLFHKHAEKMPIIDYHCHLEPAEIYENKKYENLTQIWLGGDHYKWR 62
F++EDFLL E A+ L+H +A+ PI DYHCHL P +I E+ +++NL IWL GDHYKWR
Sbjct: 4 FMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAEDYRFKNLYDIWLKGDHYKWR 63
Query: 63 LLRANGIPEKLITGDGEDYEKFLAFAKTLEKSFGNPIYEWTHLELKRFFHI-DKLISSET 121
+R NG+ E+L TGD D EKF A+A T+ + GNP+Y WTHLEL+R F I KL+S T
Sbjct: 64 AMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLSPST 123
Query: 122 AKEIWDEANQMLATDDFRPRALIKNSQVKVVCTTDDPVSTLSYHKLLAKEEK-DFKVLPA 180
A EIW+E N++LA D+F R +++ VK+V TTDDP+ +L +H +AK+ KVLP+
Sbjct: 124 ADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDPIDSLEHHAEIAKDGSFTIKVLPS 183
Query: 181 LRPDHLISITDGHFADYLTELSAVSGIEIKGFKTMIKALEQRFEFFTSLGGRLSDHSLST 240
RPD +I F DY+ +L VS +I+ F + AL +R + F + G ++SDH+L
Sbjct: 184 WRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADLQTALTKRLDHFAAHGCKVSDHALDV 243
Query: 241 YTFAETKNVDLDSILQKAKENQTLTDLEYNQYITALILEIMKLNKKFEWTMQLHVNVNRS 300
FAE +LDSIL + +TL++ E Q+ TA+++ + + W Q H+ R+
Sbjct: 244 VMFAEANEAELDSILARRLAGETLSEHEVAQFKTAVLVFLGAEYARRGWVQQYHIGALRN 303
Query: 301 INGPALSKIGENTGFDSMGTQANISEELTKLFSKAAELETIPKTILYSLNQNDWLELVTM 360
N +G + GFDS+ + ++EEL+KL SK E +PKTILY LN D L TM
Sbjct: 304 NNLRQFKLLGPDVGFDSINDRP-MAEELSKLLSKQNEENLLPKTILYCLNPRDNEVLGTM 362
Query: 361 IGCFQGEGVQ-QLQLGAGWWFNDTKKGMENQLEIFASQSLLSNFVGMLTDSRSFLSYPRH 419
IG FQGEG+ ++Q G+GWWFND K GME Q+ A LLS FVGMLTDSRSFLSY RH
Sbjct: 363 IGNFQGEGMPGKMQFGSGWWFNDQKDGMERQMTQLAQLGLLSRFVGMLTDSRSFLSYTRH 422
Query: 420 EYFRRVLCNFVGQLIENGRIPDNEALVGKMIEDISYNNVHDYF 462
EYFRR+LC +G+ +E G P + L+G+M+++I +NN DYF
Sbjct: 423 EYFRRILCQMIGRWVEAGEAPADINLLGEMVKNICFNNARDYF 465
gb|AAC98133.1| (AF098273) uronate isomerase [Bacillus stearothermophilus]
Length = 473
Score = 356 bits (903), Expect = 3e-97
Identities = 177/464 (38%), Positives = 274/464 (58%), Gaps = 5/464 (1%)
Query: 3 FLSEDFLLTNESAKMLFHKHAEKMPIIDYHCHLEPAEIYENKKYENLTQIWLGGDHYKWR 62
F+ E+FLL N+ A++L+H +A+ +PIIDYHCHL EI E++++ ++T++WL GDHYKWR
Sbjct: 4 FIHENFLLQNKHAEVLYHDYAKSLPIIDYHCHLSAKEIAEDRRFHDMTELWLEGDHYKWR 63
Query: 63 LLRANGIPEKLITGDGEDYEKFLAFAKTLEKSFGNPIYEWTHLELKRFFHIDKLISSETA 122
+RA G+ EK ITG+ EKF A+AKT+ GNP+Y WTHLELKR+F +D L++ T
Sbjct: 64 AMRALGVEEKYITGNASPEEKFQAWAKTVPYCIGNPLYHWTHLELKRYFQVDALLNERTW 123
Query: 123 KEIWDEANQMLATDDFRPRALIKNSQVKVVCTTDDPVSTLSYHKLLAKEEKDF-KVLPAL 181
+EIW+ N +L + F R+ + S V+ + TTDDP+ L+ H+ +A++ K++P+
Sbjct: 124 REIWNHCNDLLRQEGFSARSFMVKSNVEWIGTTDDPLDDLADHQAIAQDPSFLVKIVPSF 183
Query: 182 RPDHLISITDGHFADYLTELSAVSGIEIKGFKTMIKALEQRFEFFTSLGGRLSDHSLSTY 241
RPD +I I F DY+ +L + K LE R +F G R++DH L +
Sbjct: 184 RPDAVIEINRPSFLDYVGKLGEALACRFMITISCCKPLENRVRYFHEKGCRMADHGLESM 243
Query: 242 TFAETKNVDLDSILQKAKENQTLTDLEYNQYITALILEIMKLNKKFEWTMQLHVNVNRSI 301
++E + + I QK K L+ E +Y T+ + + +L W MQLH+ R+
Sbjct: 244 PYSECGWKEANDIFQKRKNGFVLSREEEEKYKTSTLCFLARLYHSLGWVMQLHIGSIRNT 303
Query: 302 NGPALSKIGENTGFDSMGTQANISEELTKLFSKAAELETIPKTILYSLNQNDWLELVTMI 361
N ++G NTG+DS+ +++ L ++ + +PKTI+Y+LN + + +
Sbjct: 304 NEKMFRRLGPNTGYDSI-HDFFLAQPLNAFLNELERRDQLPKTIVYTLNPAYNYVVASTV 362
Query: 362 GCFQGEGVQ---QLQLGAGWWFNDTKKGMENQLEIFASQSLLSNFVGMLTDSRSFLSYPR 418
G FQ EGV+ + G + + K L A+ + S FVGMLTDSRSF+SY R
Sbjct: 363 GNFQSEGVKGKVPIWRSLGGFNDSFKMAFIRHLTDLANVGVFSTFVGMLTDSRSFVSYVR 422
Query: 419 HEYFRRVLCNFVGQLIENGRIPDNEALVGKMIEDISYNNVHDYF 462
HEYFRR++CN +G IE G +P + +GK+++D+ Y N YF
Sbjct: 423 HEYFRRIVCNLIGSWIEKGEVPQDYDFLGKIVQDVCYFNAKQYF 466
gb|AAD35158.1|AE001693_4 (AE001693) uronate isomerase, putative [Thermotoga maritima]
Length = 451
Score = 282 bits (713), Expect = 6e-75
Identities = 163/458 (35%), Positives = 254/458 (54%), Gaps = 20/458 (4%)
Query: 3 FLSEDFLLTNESAKMLFHKHAEKMPIIDYHCHLEPAEIYENKKYENLTQIWLGGDHYKWR 62
FL ED+LLTN +A LF++ + +PI+D H HL+ +I ENK + ++ ++ DHY W
Sbjct: 2 FLGEDYLLTNRAAVRLFNE-VKDLPIVDPHNHLDAKDIVENKPWNDIWEVEGATDHYVWE 60
Query: 63 LLRANGIPEKLITGDGEDYEKFLAFAKTLEKSFGNPIYEWTHLELKRFFHIDKLISSETA 122
L+R G+ E+ ITG + EK+LA AK + GNP YEW HL+L R F+I K+IS ETA
Sbjct: 61 LMRRCGVSEEYITGSRSNKEKWLALAKVFPRFVGNPTYEWIHLDLWRRFNIKKVISEETA 120
Query: 123 KEIWDEANQMLATDDFRPRALIKNSQVKVVCTTDDPVSTLSYHKLLAKEEKDFKVLPALR 182
+EIW+E + L + P+ L+++ +V+++CTTDDPVSTL +H+ + + +LP R
Sbjct: 121 EEIWEETKKKL--PEMTPQKLLRDMKVEILCTTDDPVSTLEHHRKAKEAVEGVTILPTWR 178
Query: 183 PDHLISITDGHFADYLTELSAVSGIEIKGFKTMIKALEQRFEFFTSLGGRLSDHSL---S 239
PD +++ + +Y+ ++ G + + AL + E F G SDH+L S
Sbjct: 179 PDRAMNVDKEGWREYVEKMGERYGEDTSTLDGFLNALWKSHEHFKEHGCVASDHALLEPS 238
Query: 240 TYTFAETKNVDLDSILQKAKENQTLTDLEYNQYITALILEIMKLNKKFEWTMQLHVNVNR 299
Y E + ++ +KA + LT E N Y ++++ K+N++ W QLH+ R
Sbjct: 239 VYYVDENR---ARAVHEKAFSGEKLTQDEINDYKAFMMVQFGKMNQETNWVTQLHIGALR 295
Query: 300 SINGPALSKIGENTGFDSMGTQANISEELTKLFSKAAELETIPKTILYSLNQNDWLELVT 359
+G ++G D I+E L + E + K +LY L+ + T
Sbjct: 296 DYRDSLFKTLGPDSGGDISTNFLRIAEGLRYFLN---EFDGKLKIVLYVLDPTHLPTIST 352
Query: 360 MIGCFQGEGVQQLQLGAGWWFNDTKKGMENQLEIFASQSLLSNFVGMLTDSRSFLSY-PR 418
+ F + +GA WWFND+ GME L+ AS LL N GM+TDSR LS+ R
Sbjct: 353 IARAF-----PNVYVGAPWWFNDSPFGMEMHLKYLASVDLLYNLAGMVTDSRKLLSFGSR 407
Query: 419 HEYFRRVLCNFVGQLIENGRIPDNEALVGKMIEDISYN 456
E FRRVL N VG+++E G+IP EA ++++ +SY+
Sbjct: 408 TEMFRRVLSNVVGEMVEKGQIPIKEA--RELVKHVSYD 443
gb|AAA57896.1| (U18997) ORF_f352 [Escherichia coli]
Length = 352
Score = 279 bits (707), Expect = 3e-74
Identities = 138/318 (43%), Positives = 200/318 (62%), Gaps = 2/318 (0%)
Query: 3 FLSEDFLLTNESAKMLFHKHAEKMPIIDYHCHLEPAEIYENKKYENLTQIWLGGDHYKWR 62
F++EDFLL E A+ L+H +A+ PI DYHCHL P +I E+ +++NL IWL GDHYKWR
Sbjct: 25 FMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAEDYRFKNLYDIWLKGDHYKWR 84
Query: 63 LLRANGIPEKLITGDGEDYEKFLAFAKTLEKSFGNPIYEWTHLELKRFFHI-DKLISSET 121
+R NG+ E+L TGD D EKF A+A T+ + GNP+Y WTHLEL+R F I KL+S T
Sbjct: 85 AMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYHWTHLELRRPFGITGKLLSPST 144
Query: 122 AKEIWDEANQMLATDDFRPRALIKNSQVKVVCTTDDPVSTLSYHKLLAKEEK-DFKVLPA 180
A EIW+E N++LA D+F R +++ VK+V TTDDP+ +L +H +AK+ KVLP+
Sbjct: 145 ADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDPIDSLEHHAEIAKDGSFTIKVLPS 204
Query: 181 LRPDHLISITDGHFADYLTELSAVSGIEIKGFKTMIKALEQRFEFFTSLGGRLSDHSLST 240
RPD +I F DY+ +L VS +I+ F + AL +R + F + G ++SDH+L
Sbjct: 205 WRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADLQTALTKRLDHFAAHGCKVSDHALDV 264
Query: 241 YTFAETKNVDLDSILQKAKENQTLTDLEYNQYITALILEIMKLNKKFEWTMQLHVNVNRS 300
FAE +LDSIL + +TL++ E Q+ TA+++ + + W Q H+ R+
Sbjct: 265 VMFAEANEAELDSILARRLAGETLSEHEVAQFKTAVLVFLGAEYARRGWVQQYHIGALRN 324
Query: 301 INGPALSKIGENTGFDSM 318
N +G + GFDS+
Sbjct: 325 NNLRQFKLLGPDVGFDSI 342
gb|AAA57895.1| (U18997) ORF_f86; overlaps f352 by 17 bases, no frameshift found,
downstream start possible [Escherichia coli]
Length = 86
Score = 79.6 bits (193), Expect = 5e-14
Identities = 40/69 (57%), Positives = 49/69 (70%), Gaps = 1/69 (1%)
Query: 324 ISEELTKLFSKAAELETIPKTILYSLNQNDWLELVTMIGCFQGEGVQ-QLQLGAGWWFND 382
++EEL+KL SK E +PKTILY LN D L TMIG FQGEG+ ++Q G+GWWFND
Sbjct: 1 MAEELSKLLSKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFND 60
Query: 383 TKKGMENQL 391
K GME Q+
Sbjct: 61 QKDGMERQM 69
gb|AAA57894.1| (U18997) ORF_f62; overlaps f86 by 8 bases, no frameshift found
[Escherichia coli]
Length = 62
Score = 78.0 bits (189), Expect = 2e-13
Identities = 33/57 (57%), Positives = 44/57 (76%)
Query: 406 MLTDSRSFLSYPRHEYFRRVLCNFVGQLIENGRIPDNEALVGKMIEDISYNNVHDYF 462
MLTDSRSFLSY RHEYFRR+LC +G+ +E G P + L+G+M+++I +NN DYF
Sbjct: 1 MLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLGEMVKNICFNNARDYF 57
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131711164
Number of Sequences: 457798
Number of extensions: 5561730
Number of successful extensions: 12863
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12837
Number of HSP's gapped (non-prelim): 7
length of query: 472
length of database: 140,871,481
effective HSP length: 56
effective length of query: 416
effective length of database: 115,234,793
effective search space: 47937673888
effective search space used: 47937673888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 97 (42.2 bits)