Score E
Sequences producing significant alignments: (bits) Value
sp|O07631|TYPA_BACSU GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG ... 879 0.0
gb|AAF28396.1| (U12816) BipA [Vibrio parahaemolyticus] 663 0.0
sp|P32132|TYPA_ECOLI GTP-BINDING PROTEIN TYPA/BIPA (TYROSIN... 637 0.0
gi|4154969 (AE001477) putative [Helicobacter pylori J99] 637 0.0
sp|O25225|TYPA_HELPY GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG ... 636 0.0
emb|CAA12172| (AJ224871) GTPase [Escherichia coli] 635 0.0
gb|AAF10766.1|AE001968_5 (AE001968) GTP-binding elongation ... 633 e-180
sp|P72749|TYPA_SYNY3 GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG ... 631 e-180
sp|P44910|TYPA_HAEIN GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG ... 631 e-180
emb|CAB72532.1| (AL139074) GTP-binding protein typA homolog... 630 e-179
gi|3047405 (AF058333) tyrosine phosphorylated protein A [Es... 630 e-179
emb|CAA14725| (AJ235271) unknown [Rickettsia prowazekii] 571 e-162
emb|CAB09037| (Z95584) hypothetical protein Rv1165 [Mycobac... 498 e-140
gb|AAC63846.1| (AC005311) putative GTP-binding protein [Ara... 481 e-135
sp|O93640|EF2_METTE ELONGATION FACTOR 2 (EF-2) >gi|3924929 ... 190 3e-47
sp|O93632|EF2_METBU ELONGATION FACTOR 2 (EF-2) >gi|3924906 ... 181 2e-44
sp|O27131|EF2_METTH ELONGATION FACTOR 2 (EF-2) >gi|2622156 ... 181 2e-44
gi|3808292 (AF072440) GTPase [Enterobacter gergoviae] 180 4e-44
sp|P14823|EF2_HALHA ELONGATION FACTOR 2 (EF-2) >gi|99187|pi... 178 9e-44
sp|O28385|EF2_ARCFU ELONGATION FACTOR 2 (EF-2) >gi|2648651 ... 178 1e-43
sp|O93637|EF2_METMT ELONGATION FACTOR 2 (EF-2) >gi|3924925 ... 174 2e-42
sp|P74751|LEPA_SYNY3 GTP-BINDING PROTEIN LEPA >gi|1653961|d... 171 1e-41
gb|AAF30733.1|AE002129_9 (AE002129) GTP-binding membrane pr... 168 1e-40
sp|Q58448|EF2_METJA ELONGATION FACTOR 2 (EF-2) >gi|2144948|... 168 2e-40
sp|P29050|EF2_PYRWO ELONGATION FACTOR 2 (EF-2) >gi|99235|pi... 168 2e-40
sp|P09604|EF2_METVA ELONGATION FACTOR 2 (EF-2) >gi|80964|pi... 168 2e-40
emb|CAB49200.1| (AJ248283) translation elongation factor EF... 167 3e-40
gb|AAD36690.1|AE001805_15 (AE001805) lepA protein [Thermoto... 167 3e-40
sp|O59521|EF2_PYRHO ELONGATION FACTOR 2 (EF-2) >gi|3258339|... 167 3e-40
sp|O84067|LEPA_CHLTR GTP-BINDING PROTEIN LEPA >gi|3328458|g... 166 5e-40
sp|Q9Z8I4|LEPA_CHLPN GTP-BINDING PROTEIN LEPA >gi|4376635|g... 163 4e-39
sp|O67618|LEPA_AQUAE GTP-BINDING PROTEIN LEPA >gi|2984041 (... 163 4e-39
gb|AAF10717.1|AE001964_1 (AE001964) GTP-binding elongation ... 161 1e-38
sp|P26752|EF2_THEAC ELONGATION FACTOR 2 (EF-2) >gi|486820|p... 160 3e-38
sp|P37949|LEPA_BACSU GTP-BINDING PROTEIN LEPA >gi|1122398|e... 159 5e-38
sp|P75498|LEPA_MYCPN GTP-BINDING PROTEIN LEPA >gi|2146143|p... 153 5e-36
gb|AAD56962.1|AF188620_1 (AF188620) GTP-binding protein Lep... 150 4e-35
sp|P07682|LEPA_ECOLI GTP-BINDING PROTEIN LEPA >gi|1788922 (... 146 5e-34
sp|Q9ZM93|LEPA_HELPJ GTP-BINDING PROTEIN LEPA >gi|4154850 (... 146 6e-34
sp|O25122|LEPA_HELPY GTP-BINDING PROTEIN LEPA >gi|2313456|g... 145 8e-34
sp|P43729|LEPA_HAEIN GTP-BINDING PROTEIN LEPA >gi|1074172|p... 145 1e-33
ref|NP_013392.1|GUF1| GTPase; Guf1p >gi|2506379|sp|P46943|G... 145 1e-33
gi|722349 (U22360) Guf1p [Saccharomyces cerevisiae] 143 3e-33
sp|Q9YC19|EF2_AERPE ELONGATION FACTOR 2 (EF-2) >gi|5105115|... 142 7e-33
emb|CAB73286.1| (AL139077) lepA GTP-binding protein homolog... 141 2e-32
sp|P47384|LEPA_MYCGE GTP-BINDING PROTEIN LEPA >gi|1361524|p... 141 2e-32
prf||2004270A elongation factor 2 [Sulfolobus solfataricus] 141 2e-32
sp|P30925|EF2_SULSO ELONGATION FACTOR 2 (EF-2) >gi|421729|p... 141 2e-32
sp|Q9ZDQ1|LEPA_RICPR GTP-BINDING PROTEIN LEPA >gi|3860837|e... 138 1e-31
gi|1388022 (L46591) GTP binding protein [Bartonella bacilli... 138 1e-31
sp|O51115|LEPA_BORBU GTP-BINDING PROTEIN LEPA 137 2e-31
emb|CAB66240.1| (AL136503) GTP-binding protein. [Streptomyc... 137 3e-31
sp|O83523|LEPA_TREPA GTP-BINDING PROTEIN LEPA >gi|3322802 (... 137 3e-31
dbj|BAA04544| (D17650) ORF80 protein [Bacillus subtilis] 136 7e-31
sp|P53530|LEPA_MYCLE GTP-BINDING PROTEIN LEPA >gi|2127460|p... 135 1e-30
sp|O13869|YE14_SCHPO PUTATIVE GTP-BINDING PROTEIN C1B3.04C ... 133 3e-30
sp|P23112|EF2_SULAC ELONGATION FACTOR 2 (EF-2) >gi|99254|pi... 133 3e-30
sp|P33159|EF2_DESMO ELONGATION FACTOR 2 (EF-2) >gi|99245|pi... 131 1e-29
gi|146599 (K00426) LepA protein (lepA) [Escherichia coli] >... 131 2e-29
pir||BVECLA lepA protein - Escherichia coli 129 7e-29
sp|P34617|YO81_CAEEL HYPOTHETICAL GTP-BINDING PROTEIN ZK123... 127 3e-28
sp|O66428|EFG_AQUAE ELONGATION FACTOR G (EF-G) >gi|2982776 ... 125 1e-27
sp|P71739|LEPA_MYCTU GTP-BINDING PROTEIN LEPA >gi|1655655|e... 125 1e-27
gi|1184709 (U41261) elongation factor 2 [unidentified archa... 123 4e-27
sp|Q55002|OTRA_STRRM OXYTETRACYCLINE RESISTANCE PROTEIN >gi... 120 4e-26
gi|3004655 (AF017777) waclaw [Drosophila melanogaster] 119 6e-26
gb|AAF01499.1|L42544_1 (L42544) TetT [Streptococcus pyogenes] 118 1e-25
emb|CAB58373.1| (AL121859) elongation factor 2 [Schizosacch... 118 2e-25
sp|O14460|EF2_SCHPO ELONGATION FACTOR 2 (EF-2) >gi|2641944|... 118 2e-25
sp|P47335|EFG_MYCGE ELONGATION FACTOR G (EF-G) >gi|1361874|... 116 5e-25
sp|O13430|EF2_CANAL ELONGATION FACTOR 2 (EF-2) >gi|4585664|... 115 9e-25
sp|Q46306|TETP_CLOPE TETRACYCLINE RESISTANCE PROTEIN TETP (... 114 2e-24
gi|4091111 (AF046228) 30 kDa GTP-binding protein LepA [Myco... 114 3e-24
gi|849206 (U28373) Etf1p: Elongation factor 2 (Swiss Prot. ... 113 3e-24
ref|NP_010673.1|EFT2| translation elongation factor 2 (EF-2... 113 3e-24
sp|Q06193|EF2_ENTHI ELONGATION FACTOR 2 (EF-2) >gi|158941 (... 113 4e-24
sp|P80868|EFG_BACSU ELONGATION FACTOR G (EF-G) (VEGETATIVE ... 111 1e-23
sp|P15112|EF2_DICDI ELONGATION FACTOR 2 (EF-2) >gi|102232|p... 111 1e-23
emb|CAB04216.1| (Z81519) predicted using Genefinder; simila... 111 2e-23
sp|P81683|EFG_STAAU ELONGATION FACTOR G (EF-G) (85 KD VITRO... 111 2e-23
sp|P28996|EF2_CHLKE ELONGATION FACTOR 2 (EF-2) >gi|421771|p... 111 2e-23
gi|2687964 (AE001121) GTP-binding membrane protein (lepA) [... 110 3e-23
sp|Q9Z9L7|EFG_BACHD ELONGATION FACTOR G (EF-G) >gi|4512401|... 109 5e-23
sp|P13551|EFG_THETH ELONGATION FACTOR G (EF-G) >gi|72881|pi... 109 5e-23
pdb|1EFG|A Thermus thermophilus >gi|3745823|pdb|2EFG|A Chai... 109 8e-23
sp|P73473|RF3_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 3 (RF-3) >... 108 1e-22
sp|O30913|EFG1_BORBU ELONGATION FACTOR G 1 (EF-G 1) >gi|268... 108 2e-22
gi|2460295 (AF021260) elongation factor G homolog [Borrelia... 108 2e-22
sp|Q9Z802|EFG_CHLPN ELONGATION FACTOR G (EF-G) >gi|4376841|... 107 3e-22
gi|1916016 (U73497) tetracycline resistance protein [Prevot... 107 3e-22
emb|CAA69906| (Y08615) TetA(Q)3 protein [Bacteroides fragilis] 107 3e-22
pir||I40188 tetracycline resistance protein tetQ - Bacteroi... 107 3e-22
sp|O05197|TETQ_PREIN TETRACYCLINE RESISTANCE PROTEIN TETQ (... 106 4e-22
emb|CAA69907| (Y08615) TetA(Q)3 protein [Bacteroides fragilis] 106 4e-22
gi|777751 (L41667) lepA [Photobacterium sp.] >gi|780321 (L4... 106 4e-22
sp|Q08425|TETQ_BACFR TETRACYCLINE RESISTANCE PROTEIN TETQ (... 106 4e-22
sp|Q52360|TETQ_PRERU TETRACYCLINE RESISTANCE PROTEIN TETQ (... 106 4e-22
sp|P41084|EFG_RICPR ELONGATION FACTOR G (EF-G) >gi|3860700|... 106 7e-22
sp|O83464|EFG1_TREPA ELONGATION FACTOR G 1 (EF-G 1) >gi|332... 106 7e-22
emb|CAA90884| (Z54171) elongation factor EF-G [Rickettsia p... 106 7e-22
sp|Q9ZEU4|EFG_APPPP ELONGATION FACTOR G (EF-G) >gi|4127381|... 105 1e-21
sp|O84444|EFG_CHLTR ELONGATION FACTOR G (EF-G) >gi|3328868|... 105 1e-21
sp|O52836|TETW_BUTFI TETRACYCLINE RESISTANCE PROTEIN TETW (... 105 1e-21
gb|AAF02837.1|AC009894_8 (AC009894) elongation factor EF-2 ... 105 1e-21
sp|O23755|EF2_BETVU ELONGATION FACTOR 2 (EF-2) >gi|2369714|... 105 1e-21
sp|P75544|EFG_MYCPN ELONGATION FACTOR G (EF-G) >gi|2146118|... 105 1e-21
sp|O87844|EFG2_STRCO ELONGATION FACTOR G 2 (EF-G 2) >gi|328... 104 2e-21
sp|P30767|EFG_MYCLE ELONGATION FACTOR G (EF-G) >gi|419677|p... 104 2e-21
gb|AAF30936.1|AE002151_2 (AE002151) translation elongation ... 104 2e-21
emb|CAB05774.1| (Z83235) Similarity to Entamoeba elongation... 104 2e-21
sp|Q48712|TETS_LACLA TETRACYCLINE RESISTANCE PROTEIN TETS (... 104 2e-21
gb|AAF09887.1|AE001891_6 (AE001891) elongation factor G [De... 104 3e-21
sp|P74228|EFG2_SYNY3 ELONGATION FACTOR G 2 (EF-G 2) >gi|165... 104 3e-21
sp|Q07803|EFGM_RAT ELONGATION FACTOR G, MITOCHONDRIAL PRECU... 104 3e-21
dbj|BAA11470| (D79220) Peptide Elongation Factor 2 [Glugea ... 103 4e-21
sp|Q00937|TETQ_BACTN TETRACYCLINE RESISTANCE PROTEIN TETQ (... 103 4e-21
sp|P29691|EF2_CAEEL ELONGATION FACTOR 2 (EF-2) >gi|3876400|... 103 5e-21
sp|Q23716|EF2_CRYPV ELONGATION FACTOR 2 (EF-2) >gi|706975 (... 103 5e-21
sp|Q02652|TETM_STRLI TETRACYCLINE RESISTANCE PROTEIN TETM >... 103 5e-21
sp|P42473|EFTU_CHLVI ELONGATION FACTOR TU (EF-TU) >gi|56082... 102 6e-21
sp|O83748|EFG2_TREPA ELONGATION FACTOR G 2 (EF-G 2) >gi|332... 102 8e-21
sp|P13060|EF2_DROME ELONGATION FACTOR 2 (EF-2) >gi|84947|pi... 102 1e-20
pir||A40411 translation elongation factor eEF-2 - Caenorhab... 101 1e-20
sp|Q9Z9A7|EFTU_CHLPN ELONGATION FACTOR TU (EF-TU) >gi|43763... 101 2e-20
sp|P43925|EFG_HAEIN ELONGATION FACTOR G (EF-G) >gi|1074053|... 101 2e-20
gi|3642665 (U89415) elongation factor 2 [Mus musculus] 100 3e-20
sp|O53790|EFG_MYCTU ELONGATION FACTOR G (EF-G) >gi|3261535|... 100 3e-20
emb|CAA73881| (Y13477) mitochondrial elongation factor G [L... 100 3e-20
sp|Q90705|EF2_CHICK ELONGATION FACTOR 2 (EF-2) >gi|1184958 ... 100 3e-20
prf||1921319A elongation factor 2 [Gallus gallus] 100 3e-20
gi|600159 (U17362) elongation factor 2 [Cricetulus griseus] 100 3e-20
sp|P05197|EF2_RAT ELONGATION FACTOR 2 (EF-2) >gi|625343|pir... 100 3e-20
sp|P05086|EF2_MESAU ELONGATION FACTOR 2 (EF-2) >gi|90183|pi... 100 3e-20
sp|P09445|EF2_CRIGR ELONGATION FACTOR 2 (EF-2) >gi|90184|pi... 100 4e-20
sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G) >gi|4982069|... 100 5e-20
pir||S35701 translation elongation factor G, chloroplast - ... 100 5e-20
gi|1470078 (U58986) tetracyline resistance gene Tet(M) [Gar... 100 5e-20
gi|1470076 (U58985) tetracyline resistance gene Tet(M) [Gar... 100 5e-20
sp|Q54807|TETM_STRPN TETRACYCLINE RESISTANCE PROTEIN TETM F... 100 5e-20
sp|P34811|EFGC_SOYBN ELONGATION FACTOR G, CHLOROPLAST PRECU... 100 5e-20
ref|NP_001952.1|| eukaryotic translation elongation factor ... 100 5e-20
emb|CAA50573| (X71439) translation elongation factor EF-G [... 100 5e-20
pir||S44896 ZK1236.1 protein - Caenorhabditis elegans >gi|2... 100 5e-20
sp|P13550|EFG_SPIPL ELONGATION FACTOR G (EF-G) >gi|79738|pi... 100 5e-20
sp|P21598|TET9_ENTFA TETRACYCLINE RESISTANCE PROTEIN TETM F... 100 5e-20
emb|CAA63548| (X92971) translocation elongation factor [Sac... 99 7e-20
ref|NP_014236.1|YNL163C| Ynl163cp >gi|1730796|sp|P53893|YNQ... 99 7e-20
bbs|57690 (S57688) EF-G=elongation factor G [Thermotoga mar... 99 7e-20
sp|P18667|EFG_ANANI ELONGATION FACTOR G (EF-G) >gi|79627|pi... 99 9e-20
gb|AAD16059| (AF087414) elongation factor G [Haemophilus du... 99 1e-19
gb|AAF19548.1|AC007190_16 (AC007190) F23N19.11 [Arabidopsis... 98 2e-19
gb|AAC67915.1| (AE001305) Elongation Factor Tu [Chlamydia t... 98 2e-19
sp|P70782|EFG_AGRTU ELONGATION FACTOR G (EF-G) >gi|1666547|... 98 2e-19
sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G) >gi|642967|e... 98 2e-19
pir||EFECG translation elongation factor EF-G - Escherichia... 98 3e-19
prf||0905186A elongation factor G [Escherichia coli] 98 3e-19
sp|P02996|EFG_ECOLI ELONGATION FACTOR G (EF-G) >gi|41517|em... 98 3e-19
gb|AAD32833.1|AC007659_15 (AC007659) putative mitochondrial... 97 4e-19
sp|P26229|EFG_SALTY ELONGATION FACTOR G (EF-G) >gi|321911|p... 97 4e-19
emb|CAB52147.1| (AL109734) elongation factor 2 [Schizosacch... 97 5e-19
emb|CAA19260.1| (AL023704) elongation factor 2-like protein... 97 5e-19
sp|P16018|EF1A_HALMA ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 97 5e-19
sp|P26622|EFTU_CHLTR ELONGATION FACTOR TU (EF-TU) >gi|10754... 97 5e-19
emb|CAB75131.1| (AL139075) elongation factor G [Campylobact... 96 6e-19
dbj|BAA88144.1| (AB035471) EF-G [Porphyromonas gingivalis] 96 6e-19
dbj|BAA88142.1| (AB035469) EF-G [Porphyromonas gingivalis] 96 6e-19
dbj|BAA88141.1| (AB035468) EF-G [Porphyromonas gingivalis] 96 6e-19
dbj|BAA88140.1| (AB035467) EF-G [Porphyromonas gingivalis] 96 6e-19
sp|P42477|EFTU_HERAU ELONGATION FACTOR TU (EF-TU) >gi|56083... 96 8e-19
emb|CAA74739| (Y14370) peptide chain release factor 3 [Stap... 96 1e-18
emb|CAA41267| (X58378) mitochondrial elongation factor G [... 96 1e-18
sp|O50306|EFTU_BACST ELONGATION FACTOR TU (EF-TU) >gi|26613... 95 1e-18
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp... 95 2e-18
sp|Q01698|EFTU_THEAQ ELONGATION FACTOR TU (EF-TU) >gi|47877... 95 2e-18
sp|P09952|EFG_MICLU ELONGATION FACTOR G (EF-G) >gi|79831|pi... 95 2e-18
dbj|BAA88143.1| (AB035470) EF-G [Porphyromonas gingivalis] 94 2e-18
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 94 2e-18
sp|Q9ZK24|EFG_HELPJ ELONGATION FACTOR G (EF-G) >gi|4155707 ... 94 3e-18
sp|P56002|EFG_HELPY ELONGATION FACTOR G (EF-G) >gi|2314354|... 94 3e-18
sp|P33166|EFTU_BACSU ELONGATION FACTOR TU (EF-TU) (P-40) >g... 94 3e-18
dbj|BAA75269.1| (AB017508) tufA homologue (identity of 91% ... 94 4e-18
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermo... 94 4e-18
emb|CAA29397| (X05977) elongation factor Tu (AA 1 - 406) [T... 94 4e-18
sp|P07157|EFTU_THETH ELONGATION FACTOR TU (EF-TU) >gi|77584... 94 4e-18
emb|CAB53113.1| (AJ245645) protein synthesis elongation fac... 93 5e-18
pir||S17146 translation elongation factor Tu.B - Thermus aq... 93 5e-18
sp|O51634|EFG2_BORBU ELONGATION FACTOR G 2 (EF-G 2) >gi|268... 93 7e-18
gb|AAF04270.1|AF181877_1 (AF181877) elongation factor G [He... 92 9e-18
ref|NP_014830.1|TUF1| Translation elongation factor Tu, mit... 92 1e-17
sp|P35450|EFGC_PEA ELONGATION FACTOR G, CHLOROPLAST (EF-G) ... 92 1e-17
sp|P56292|EFTU_CHLVU ELONGATION FACTOR TU (EF-TU) >gi|22244... 92 2e-17
sp|P33170|EFTU_STROR ELONGATION FACTOR TU (EF-TU) >gi|32048... 92 2e-17
sp|Q17152|EF2_BLAHO ELONGATION FACTOR 2 (EF-2) >gi|1125010|... 91 2e-17
sp|P17745|EFTU_ARATH ELONGATION FACTOR TU, CHLOROPLAST PREC... 91 2e-17
gb|AAF15312.1|AF145053_1 (AF145053) chloroplast translation... 91 3e-17
sp|O50565|EFG_THICU ELONGATION FACTOR G (EF-G) >gi|2654448 ... 90 4e-17
emb|CAA45101| (X63539) orf [Mycobacterium tuberculosis] 90 4e-17
emb|CAA90881| (Z54170) elongation factor EF-Tu [Rickettsia ... 90 4e-17
sp|P31501|EFTU_MYCTU ELONGATION FACTOR TU (EF-TU) >gi|28252... 90 4e-17
dbj|BAA02982.2| (D13869) elongation factor Tu [Mycobacteriu... 90 5e-17
sp|P48865|EFTU_RICPR ELONGATION FACTOR TU (EF-TU) >gi|38612... 90 5e-17
pir||S38928 elongation factor G - Aquifex pyrophilus (fragm... 90 5e-17
pir||JC2262 translation elongation factor Tu - Mycobacteriu... 90 5e-17
sp|P30768|EFTU_MYCLE ELONGATION FACTOR TU (EF-TU) >gi|47962... 90 5e-17
emb|CAB62091.1| (AL133303) putative elongation factor G, mi... 90 6e-17
ref|NP_035561.1|| U5 small nuclear ribonucleoprotein 116 kD... 90 6e-17
ref|NP_004238.1|| U5 snRNP-specific protein, 116 kD >gi|434... 90 6e-17
sp|P02991|EFTU_EUGGR ELONGATION FACTOR TU (EF-TU) >gi|72865... 90 6e-17
sp|P13537|EFTU_THEMA ELONGATION FACTOR TU (EF-TU) >gi|49820... 89 8e-17
sp|P28371|EFG1_SYNY3 ELONGATION FACTOR G 1 (EF-G 1) >gi|165... 89 1e-16
pir||S20656 translation elongation factor G - Synechocystis... 89 1e-16
gb|AAF09890.1|AE001892_1 (AE001892) elongation factor TU [D... 89 1e-16
pir||A48314 translation elongation factor Tu - Thermotoga m... 89 1e-16
sp|O50340|EFTU_FERIS ELONGATION FACTOR TU (EF-TU) >gi|26878... 88 2e-16
sp|P42472|EFTU_CHLAU ELONGATION FACTOR TU (EF-TU) >gi|21199... 88 2e-16
pir||S41612 translation elongation factor G, chloroplast - ... 88 2e-16
sp|P14634|EFTU_ASTLO ELONGATION FACTOR TU (EF-TU) >gi|72866... 88 2e-16
sp|P48863|EF1A_HALHA ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 88 2e-16
sp|P17245|EFTU_CYAPA ELONGATION FACTOR TU (EF-TU) >gi|10161... 87 3e-16
pir||EFKTT translation elongation factor Tu - Cyanophora pa... 87 3e-16
sp|P19457|EFTU_GUITH ELONGATION FACTOR TU (EF-TU) >gi|36030... 87 3e-16
sp|Q43467|EFT1_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PREC... 87 3e-16
pir||I53499 P43 - human >gi|833999|bbs|160014 (S75463) P43=... 87 4e-16
gi|666130 (M74221) elongation factor Tu [Chlamydia trachoma... 87 4e-16
gb|AAD32649.1|AF136604_1 (AF136604) EF-Tu [Coxiella burnetii] 87 5e-16
sp|P33165|EFTU_BACFR ELONGATION FACTOR TU (EF-TU) >gi|32045... 87 5e-16
sp|P26184|EFTU_FLESI ELONGATION FACTOR TU (EF-TU) >gi|62534... 87 5e-16
sp|O59153|EF1A_PYRHO ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 86 7e-16
sp|P42482|EFTU_WOLSU ELONGATION FACTOR TU (EF-TU) >gi|58759... 86 7e-16
sp|O69303|EFTU_CAMJE ELONGATION FACTOR TU (EF-TU) >gi|31147... 86 9e-16
sp|P49411|EFTU_HUMAN ELONGATION FACTOR TU, MITOCHONDRIAL PR... 86 9e-16
ref|NP_003312.1|| Tu translation elongation factor, mitocho... 86 9e-16
emb|CAB49596.1| (AJ248285) translation elongation factor EF... 85 1e-15
pir||S62701 translation elongation factor Tu precursor - Ar... 85 1e-15
sp|P42480|EFTU_TAXOC ELONGATION FACTOR TU (EF-TU) >gi|58758... 85 1e-15
sp|P13552|EFTU_SPIPL ELONGATION FACTOR TU (EF-TU) >gi|79739... 85 1e-15
sp|P42439|EFTU_CORGL ELONGATION FACTOR TU (EF-TU) >gi|56081... 85 1e-15
gi|2688415 (AE001152) translation elongation factor TU (tuf... 85 2e-15
sp|P74227|EFTU_SYNY3 ELONGATION FACTOR TU (EF-TU) >gi|16534... 85 2e-15
pir||S57945 probable translation elongation factor EF-Tu - ... 85 2e-15
sp|P42476|EFTU_FLAFE ELONGATION FACTOR TU (EF-TU) >gi|56083... 85 2e-15
sp|P50062|EFTU_BORBU ELONGATION FACTOR TU (EF-TU) >gi|21204... 85 2e-15
emb|CAA09488| (AJ011104) elongation factor TU [Apple prolif... 85 2e-15
sp|P33171|EFTU_SYNP7 ELONGATION FACTOR TU (EF-TU) 85 2e-15
sp|P18668|EFTU_ANANI ELONGATION FACTOR TU (EF-TU) >gi|79628... 85 2e-15
sp|P49462|EFTU_ODOSI ELONGATION FACTOR TU (EF-TU) >gi|11851... 84 3e-15
sp|P33168|EFTU_DEISP ELONGATION FACTOR TU (EF-TU) >gi|32038... 84 3e-15
sp|P50068|EFTU_UREUR ELONGATION FACTOR TU (EF-TU) >gi|21276... 84 3e-15
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 84 4e-15
pir||S62768 translation elongation factor Tu precursor - bo... 84 4e-15
dbj|BAA07491.1| (D38471) elongation factor Tu homologue pre... 84 4e-15
dbj|BAA07492.1| (D38472) elongation factor Tu homologue pre... 84 4e-15
sp|P49410|EFTU_BOVIN ELONGATION FACTOR TU, MITOCHONDRIAL PR... 84 4e-15
sp|P42479|EFTU_STIAU ELONGATION FACTOR TU (EF-TU) >gi|10840... 84 4e-15
sp|P17197|EF1A_THECE ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 83 5e-15
pir||JC1420 translation elongation factor Tu - Chlamydia tr... 83 5e-15
gb|AAF22606.1|AF153617_2 (AF153617) elongation factor Tu1 [... 83 6e-15
dbj|BAA02028.1| (D11470) chloroplast elongation factor TuB(... 83 6e-15
dbj|BAA01975.1| (D11376) chloroplast elongation factor TuB ... 83 6e-15
pir||S36184 translation elongation factor Tu.B precursor, c... 83 6e-15
sp|P72689|IF2_SYNY3 TRANSLATION INITIATION FACTOR IF-2 >gi|... 83 8e-15
pir||S31151 translation elongation factor Tu - Mycobacteriu... 83 8e-15
sp|P13927|EFTU_MYCGE ELONGATION FACTOR TU (EF-TU) >gi|72862... 83 8e-15
sp|O33594|EFTU_STRAU ELONGATION FACTOR TU (EF-TU) >gi|22466... 82 1e-14
sp|P18906|EFTU_MYCGA ELONGATION FACTOR TU (EF-TU) >gi|72863... 82 1e-14
emb|CAA54197| (X76870) elongation factor Tu [Stigmatella au... 82 2e-14
gb|AAD54821.1|AF137379_44 (AF137379) translational elongati... 81 2e-14
sp|Q53871|EFT1_STRCU ELONGATION FACTOR TU-1 (EF-TU-1) 81 2e-14
pir||PC4060 translation elongation factor Tu1 - Streptomyce... 81 2e-14
sp|P50371|EFTU_CHACO ELONGATION FACTOR TU (EF-TU) >gi|21481... 81 2e-14
sp|P42471|EFTU_BRELN ELONGATION FACTOR TU (EF-TU) >gi|21473... 81 3e-14
sp|P29542|EFT1_STRRA ELONGATION FACTOR TU-1 (EF-TU-1) >gi|2... 80 4e-14
gi|4100123 (U94347) elongation factor EF-1alpha [Pyrobaculu... 80 7e-14
sp|O66429|EFTU_AQUAE ELONGATION FACTOR TU (EF-TU) >gi|29827... 80 7e-14
sp|O50293|EFTU_AQUPY ELONGATION FACTOR TU (EF-TU) >gi|26878... 79 1e-13
sp|P95724|EFTU_STRCJ ELONGATION FACTOR TU (EF-TU) >gi|17076... 79 1e-13
sp|P42475|EFTU_FIBSU ELONGATION FACTOR TU (EF-TU) >gi|56083... 79 1e-13
gb|AAF22608.1|AF153618_2 (AF153618) elongation factor Tu1 [... 78 2e-13
sp|O29325|EF1A_ARCFU ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 78 2e-13
gb|AAD40614.1| (AF115283) elongation factor Tu [Leptospira ... 78 3e-13
dbj|BAA80848.1| (AP000062) 437aa long hypothetical elongati... 78 3e-13
gi|2984182 (AE000763) elongation Factor EF-Tu [Aquifex aeol... 78 3e-13
prf||2021268A elongation factor [Streptomyces coelicolor] 78 3e-13
sp|P40174|EFT1_STRCO ELONGATION FACTOR TU-1 (EF-TU-1) >gi|1... 78 3e-13
emb|CAA72978.1| (Y12311) elongation factor Ef-Tu [Buchnera ... 77 3e-13
sp|P33169|EFTU_SHEPU ELONGATION FACTOR TU (EF-TU) >gi|32037... 77 3e-13
gb|AAD50011.1|AC007651_6 (AC007651) Similar to translation ... 77 5e-13
sp|P33167|EFTU_BURCE ELONGATION FACTOR TU (EF-TU) >gi|32039... 75 1e-12
sp|P48864|EFTU_NEIGO ELONGATION FACTOR TU (EF-TU) 75 2e-12
gi|790859 (L36380) putative [Neisseria gonorrhoeae] 75 2e-12
gb|AAD36718.1|AE001807_9 (AE001807) translation elongation ... 73 5e-12
sp|Q57770|EF1A_METJA ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA)... 71 3e-11
ref|NP_012748.1|SNU114| U5 snRNP-specific protein related t... 66 9e-10
sp|P29541|EFG_STRRA ELONGATION FACTOR G (EF-G) >gi|280336|p... 63 8e-09
dbj|BAA81387.1| (AP000064) 617aa long hypothetical transcri... 62 1e-08
sp|Q9ZCZ8|IF2_RICPR TRANSLATION INITIATION FACTOR IF-2 >gi|... 62 1e-08
pir||S46918 GTP-binding protein - Mycoplasma capricolum (SG... 61 4e-08
pir||S54734 translation elongation factor aEF-1 alpha chain... 60 5e-08
sp|P95691|IF2P_SULAC PROBABLE TRANSLATION INITIATION FACTOR... 59 9e-08
gi|1009232 (L38828) EF-1-alpha-related GTP-binding protein ... 59 9e-08
emb|CAB52624.1| (AL109822) putative elongation factor g, mi... 58 2e-07
sp|Q27140|EF12_EUPCR ELONGATION FACTOR 1-ALPHA 2 (EF-1-ALPH... 58 3e-07
sp|O26359|IF2P_METTH PROBABLE TRANSLATION INITIATION FACTOR... 55 2e-06
gi|2665722 (AF035608) ATP sulfurylase GTP-binding subunit/A... 54 4e-06
dbj|BAA10520| (D64003) elongation factor EF-G [Synechocysti... 54 4e-06
gb|AAD55761.1|AF158023_3 (AF158023) ATP sulfurylase subunit... 53 5e-06
pir||S70822 translation initiation factor IF-2 - red alga (... 53 5e-06
sp|Q08810|IF2C_CYACA TRANSLATION INITIATION FACTOR IF-2, CH... 53 5e-06
gi|2649867 (AE001053) GTP-binding protein [Archaeoglobus fu... 53 8e-06
sp|P48862|EFG_NEIGO ELONGATION FACTOR G (EF-G) >gi|790858 (... 53 8e-06
gi|460044 (L29389) Fun12p [Saccharomyces cerevisiae] 53 8e-06
emb|CAB63717.1| (AL133563) hypothetical protein [Homo sapiens] 52 1e-05
emb|CAB44357.1| (AJ006776) IF2 protein [Homo sapiens] 52 1e-05
gb|AAD16006.1| (AF078035) translation initiation factor IF2... 52 1e-05
sp|O60841|IF2P_HUMAN PROBABLE TRANSLATION INITIATION FACTOR... 52 1e-05
gi|1009234 (L38829) SUP2 gene product [Nicotiana tabacum] 50 7e-05
gi|414451 (U01722) unknown [Mycoplasma genitalium] 48 2e-04
ref|NP_009365.1|FUN12| 97 kDa protein; Fun12p >gi|1723187|s... 47 4e-04
sp|P50743|YPHC_BACSU HYPOTHETICAL 48.8 KD GTP-BINDING PROTE... 46 8e-04
gi|2649400 (AE001022) GTP-binding protein [Archaeoglobus fu... 46 0.001
gb|AAF22607.1|AF153618_1 (AF153618) elongation factor G [St... 44 0.004
gb|AAF22605.1|AF153617_1 (AF153617) elongation factor G [St... 44 0.004
sp|O07631|TYPA_BACSU GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG >gi|2224766|emb|CAB09712|
(Z97025) product highly similar to elongation factor
EF-G [Bacillus subtilis] >gi|2633848|emb|CAB13350|
(Z99111) similar to GTP-binding elongation factor
[Bacillus subtilis]
Length = 612
Score = 879 bits (2246), Expect = 0.0
Identities = 428/608 (70%), Positives = 515/608 (84%), Gaps = 2/608 (0%)
Query: 6 KLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAK 65
KLR D+RN+A+IAHVDHGKTTLVD+LL Q+ T A +++AERAMDSN LE+ERGITILAK
Sbjct: 2 KLRNDLRNIAIIAHVDHGKTTLVDQLLHQAGTFRANEQVAERAMDSNDLERERGITILAK 61
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
NTA+ Y TRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEG MPQTRFVLKKALEQ
Sbjct: 62 NTAINYKDTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGCMPQTRFVLKKALEQ 121
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
NL P+VVVNKID+ ARP EV+DEVL+LFIEL A++EQL+FPVVYASAING++S+ +P
Sbjct: 122 NLNPVVVVNKIDRDFARPEEVIDEVLDLFIELDANEEQLEFPVVYASAINGTASL--DPK 179
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
Q+ M +++TII H+P PVDN++EPLQFQV+LLDYNDY T+KVG V
Sbjct: 180 QQDENMEALYETIIKHVPAPVDNAEEPLQFQVALLDYNDYVGRIGIGRVFRGTMKVGQQV 239
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPL 305
+L KLDG+ K+FRVTK+FGF GL R EI+EAKAGDL+A+SGMEDI VGETV P DH +PL
Sbjct: 240 SLMKLDGTAKSFRVTKIFGFQGLKRVEIEEAKAGDLVAVSGMEDINVGETVCPVDHQDPL 299
Query: 306 PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWV 365
P+L IDEPTLQMTF+ NNSPFAGREGK+VT+RK+EERL S+LQTDVSLRVE T SPD WV
Sbjct: 300 PVLRIDEPTLQMTFVVNNSPFAGREGKYVTARKIEERLQSQLQTDVSLRVEPTASPDAWV 359
Query: 366 VSGRGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQ 425
VSGRGELHLSILIE MRREGYELQVS+PEVIIKEIDGV CEP ERVQID PEE+ GS+++
Sbjct: 360 VSGRGELHLSILIENMRREGYELQVSKPEVIIKEIDGVRCEPVERVQIDVPEEHTGSVME 419
Query: 426 ALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVK 485
++ RKG+M+DM GNGQ RLIF VP+RGLIG++TEF+S+TRG+GI+NHTFD Y P
Sbjct: 420 SMGARKGEMVDMINNGNGQVRLIFTVPSRGLIGYSTEFLSLTRGFGILNHTFDSYQPMQA 479
Query: 486 GEIGGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNI 545
G++GGR +G L+SM++G+ TSY + +++RG +FV+ GTEVY GMIVGEH+RDNDL VN+
Sbjct: 480 GQVGGRRQGVLVSMENGKATSYGIQGIEDRGVIFVEPGTEVYEGMIVGEHNRDNDLVVNV 539
Query: 546 TKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMR 605
+KMKQQTNVRS+ KD T+ + +I+SLEESLE+L +D+Y EVTPESIRLRK+IL+K R
Sbjct: 540 SKMKQQTNVRSATKDQTTTIKKARIMSLEESLEYLNEDEYCEVTPESIRLRKKILNKNER 599
Query: 606 EKSTKKKK 613
EK+ KKKK
Sbjct: 600 EKAAKKKK 607
gb|AAF28396.1| (U12816) BipA [Vibrio parahaemolyticus]
Length = 609
Score = 663 bits (1693), Expect = 0.0
Identities = 332/605 (54%), Positives = 439/605 (71%), Gaps = 2/605 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
+ +RN+A+IAHVDHGKTTLVD+LL+QS TL++R E ER MDSN +E+ERGITILAKNTA
Sbjct: 7 DKLRNIAIIAHVDHGKTTLVDKLLQQSGTLESRGEAEERVMDSNDIEKERGITILAKNTA 66
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ +N RINI+DTPGHADFGGEVERIM MVD V+L+VDA +G MPQTRFV +KA L
Sbjct: 67 INWNDYRINIVDTPGHADFGGEVERIMSMVDSVLLIVDAVDGPMPQTRFVTQKAFAHGLK 126
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVV+NKID+P ARP V+D+V +LF LGA D+QLDF VVYASA+NG +S+ + +
Sbjct: 127 PIVVINKIDRPGARPDWVMDQVFDLFDNLGATDDQLDFKVVYASALNGWASLEEGETGEN 186
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M +F TI+D + P + D PLQ QVS LDY+ Y ++K VT+
Sbjct: 187 --MEPLFQTIVDVVDAPNVDLDGPLQMQVSQLDYSSYVGVIGVARVTRGSVKANQQVTII 244
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
DG T+N +V + G+ GL+R E+++A AGD+IA++G+ ++ + +T+ + VE LP L
Sbjct: 245 GADGKTRNGKVGTVMGYLGLERHEVEQANAGDIIAITGLGELKISDTICAQNAVEALPAL 304
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
+DEPT+ MTF N SPFAG+EGK+VTSR + ERL EL +V+LRVE T+ PDK+ VSG
Sbjct: 305 SVDEPTVTMTFQVNTSPFAGKEGKFVTSRNILERLEKELVHNVALRVEQTDDPDKFRVSG 364
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGELHLSILIE MRREG+EL VSRPEVIIKE DG EPFE V ID EE+QG I++ +
Sbjct: 365 RGELHLSILIENMRREGFELAVSRPEVIIKEEDGQLMEPFETVTIDVMEEHQGGIMENIG 424
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
RKG++ DM G G+ R+ F++P+RGLIGF TEFM++T G G++ HTFD Y P G I
Sbjct: 425 LRKGELKDMAPDGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHKGGNI 484
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
G R G LI+ +G+ + A+ +QERG+LF+ G EVY GM++G HSRDNDLTVN K
Sbjct: 485 GQRVNGVLIANAAGKALTNALFNLQERGRLFIGHGVEVYEGMVIGIHSRDNDLTVNALKG 544
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKS 608
KQ TNVR+S D VL P +++LE++LEF+ DD+ +EVTPESIR+RK+ L ++ R+++
Sbjct: 545 KQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPESIRIRKKFLTESDRKRA 604
Query: 609 TKKKK 613
++ K
Sbjct: 605 SRSAK 609
sp|P32132|TYPA_ECOLI GTP-BINDING PROTEIN TYPA/BIPA (TYROSINE PHOSPHORYLATED PROTEIN A)
>gi|628735|pir||S40816 hypothetical protein o591 -
Escherichia coli >gi|304976 (L19201) matches PS00017:
ATP_GTP_A and PS00301: EFACTOR_GTP; similar to
elongation factor G, TetM/TetO tetracycline-resistance
proteins [Escherichia coli] >gi|1790302 (AE000462)
putative GTP-binding factor [Escherichia coli]
Length = 591
Score = 637 bits (1626), Expect = 0.0
Identities = 317/590 (53%), Positives = 420/590 (70%), Gaps = 2/590 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E +RN+A+IAHVDHGKTTLVD+LL+QS T D+R E ER MDSN LE+ERGITILAKNTA
Sbjct: 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+++N RINI+DTPGHADFGGEVER+M MVD V+LVVDA++G MPQTRFV KKA L
Sbjct: 63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVV+NK+D+P ARP VVD+V +LF+ L A DEQLDFP+VYASA+NG + + D
Sbjct: 123 PIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE--DMA 180
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M ++ I+DH+P P + D P Q Q+S LDYN Y +K VT+
Sbjct: 181 EDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
+G T+N +V K+ G GL+R E A+AGD++A++G+ ++ + +TV + +VE LP L
Sbjct: 241 DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPAL 300
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
+DEPT+ M F N SPF G+EGK+VTSR++ +RL EL +V+LRVE TE D + VSG
Sbjct: 301 SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG 360
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGELHLS+LIE MRREG+EL VSRP+VI +EIDG EP+E V +D E++QGS++QAL
Sbjct: 361 RGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALG 420
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
ERKGD+ +M G G+ RL +++P+RGLIGF +EFM+MT G G++ TF Y GE+
Sbjct: 421 ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
G R G LIS G+ ++A+ +Q+RG+LF+ G EVY G I+G HSR NDLTVN
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQ 598
K+ TN+R+S D VL P ++LE++LEF+ DD+ +EVTP SIR+RK+
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKR 590
gi|4154969 (AE001477) putative [Helicobacter pylori J99]
Length = 599
Score = 637 bits (1625), Expect = 0.0
Identities = 314/602 (52%), Positives = 440/602 (72%), Gaps = 4/602 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN+AVIAHVDHGKTTLVD LL QS T R+++ ER MDSN LE+ERGITIL+KNTA
Sbjct: 2 KNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLEKERGITILSKNTA 61
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ Y T+INI+DTPGHADFGGEVER++KMVDGV+L+VDA EG MPQT+FV+KKAL +
Sbjct: 62 IYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVVVNKIDKP+A P VVDEV +LF+ +GA D+QLDFPVVYA+A +G + S + D++
Sbjct: 122 PIVVVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLD--DEK 179
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
+ +F+TI++H+P P + DEPLQ Q+ LDY++Y ++K +SV L
Sbjct: 180 KNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLM 239
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
K DGS +N R+TKL GF GL R EI+ A AGD++AL+G + VG++V + PL +
Sbjct: 240 KSDGSKENGRITKLIGFLGLARTEIENAYAGDIVALAGFNAMDVGDSVVDPTNPMPLDPM 299
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
H++EPT+ + F N+SP AG EGK VT+ K+++RL+ E+QT+++++ E K+ VSG
Sbjct: 300 HLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEM-GEGKFKVSG 358
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGEL ++IL E +RREG+E +SRPEVIIKE +GV CEPFE + IDTP+++ G+II+ L
Sbjct: 359 RGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLG 418
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
+RK +M M +G RL F +PARGLIG+ +EF++ T+G G+MNH+F ++ P G +
Sbjct: 419 KRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRP-FSGSV 477
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
R G+LISM++G+ T++++ +QERG LF++ T+VY GM++GEHSRDNDL VN K
Sbjct: 478 ESRKNGALISMENGEATAFSLFNIQERGALFINPQTKVYVGMVIGEHSRDNDLDVNPIKS 537
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKS 608
K TN+R+S D L P+ + LE +LE++ +D+ LEVTP ++R+RK+ILD MR+++
Sbjct: 538 KHLTNMRASGSDDAIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRA 597
Query: 609 TK 610
K
Sbjct: 598 KK 599
sp|O25225|TYPA_HELPY GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG >gi|2313589|gb|AAD07546.1|
(AE000562) GTP-binding protein, fusA-homolog (yihK)
[Helicobacter pylori 26695]
Length = 599
Score = 636 bits (1622), Expect = 0.0
Identities = 313/602 (51%), Positives = 440/602 (72%), Gaps = 4/602 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN+AVIAHVDHGKTTLVD LL QS T R+++ ER MDSN LE+ERGITIL+KNTA
Sbjct: 2 KNIRNIAVIAHVDHGKTTLVDGLLSQSGTFSEREKVDERVMDSNDLERERGITILSKNTA 61
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ Y T+INI+DTPGHADFGGEVER++KMVDGV+L+VDA EG MPQT+FV+KKAL +
Sbjct: 62 IYYKDTKINIIDTPGHADFGGEVERVLKMVDGVLLLVDAQEGVMPQTKFVVKKALSFGIC 121
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVVVNKIDKP+A P VVDEV +LF+ +GA D+QLDFPVVYA+A +G + S + D++
Sbjct: 122 PIVVVNKIDKPAAEPDRVVDEVFDLFVAMGASDKQLDFPVVYAAARDGYAMKSLD--DEK 179
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
+ +F+TI++H+P P + DEPLQ Q+ LDY++Y ++K +SV L
Sbjct: 180 KNLEPLFETILEHVPSPSGSVDEPLQMQIFTLDYDNYVGKIGIARVFNGSVKKNESVLLM 239
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
K DGS +N R+TKL GF GL R EI+ A AGD++A++G + VG++V + PL +
Sbjct: 240 KSDGSKENGRITKLIGFLGLARTEIENAYAGDIVAIAGFNAMDVGDSVVDPANPMPLDPM 299
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
H++EPT+ + F N+SP AG EGK VT+ K+++RL+ E+QT+++++ E K+ VSG
Sbjct: 300 HLEEPTMSVYFAVNDSPLAGLEGKHVTANKLKDRLLKEMQTNIAMKCEEM-GEGKFKVSG 358
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGEL ++IL E +RREG+E +SRPEVIIKE +GV CEPFE + IDTP+++ G+II+ L
Sbjct: 359 RGELQITILAENLRREGFEFSISRPEVIIKEENGVKCEPFEHLVIDTPQDFSGAIIERLG 418
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
+RK +M M +G RL F +PARGLIG+ +EF++ T+G G+MNH+F ++ P G +
Sbjct: 419 KRKAEMKAMNPMSDGYTRLEFEIPARGLIGYRSEFLTDTKGEGVMNHSFLEFRP-FSGSV 477
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
R G+LISM++G+ T++++ +QERG LF++ T+VY GM++GEHSRDNDL VN K
Sbjct: 478 ESRKNGALISMENGEATAFSLFNIQERGTLFINPQTKVYVGMVIGEHSRDNDLDVNPIKS 537
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKS 608
K TN+R+S D L P+ + LE +LE++ +D+ LEVTP ++R+RK+ILD MR+++
Sbjct: 538 KHLTNMRASGSDDAIKLTPPRTMVLERALEWIEEDEILEVTPLNLRIRKKILDPNMRKRA 597
Query: 609 TK 610
K
Sbjct: 598 KK 599
emb|CAA12172| (AJ224871) GTPase [Escherichia coli]
Length = 591
Score = 635 bits (1621), Expect = 0.0
Identities = 316/590 (53%), Positives = 419/590 (70%), Gaps = 2/590 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E +RN+A+IAHVDHGKTTLVD+LL+QS T D+R E ER MDSN LE+ERGITILAKNTA
Sbjct: 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+++N RINI+DTPGHADFGGEVER+M MVD V+LVVDA++G MPQTRFV KKA L
Sbjct: 63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVV+NK+D+P ARP VVD+V +LF+ L A DEQLDFP+VYASA+NG + + D
Sbjct: 123 PIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHE--DMA 180
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M ++ I+DH+P P + D P Q Q+S LDYN Y +K VT+
Sbjct: 181 EDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
+G T+N +V K+ G GL+R E A+AGD++A++G+ ++ + +TV + +VE LP L
Sbjct: 241 DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPAL 300
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
+DEPT+ M F N SPF G+EGK+VTSR++ +RL EL +V+LRVE TE D + VSG
Sbjct: 301 SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG 360
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGELHLS+LIE MRREG+EL VSRP+VI +EIDG EP+E V +D E++QGS++QAL
Sbjct: 361 RGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEEQHQGSVMQALG 420
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
ERKGD+ +M G G+ RL +++P+RGLIGF +EFM+MT G G++ TF Y GE+
Sbjct: 421 ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
G R G L S G+ ++A+ +Q+RG+LF+ G EVY G I+G HSR NDLTVN
Sbjct: 481 GQRQNGVLTSNGQGKAAAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQ 598
K+ TN+R+S D VL P ++LE++LEF+ DD+ +EVTP SIR+RK+
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKR 590
gb|AAF10766.1|AE001968_5 (AE001968) GTP-binding elongation factor family protein TypA/BipA
[Deinococcus radiodurans]
Length = 593
Score = 633 bits (1615), Expect = e-180
Identities = 326/598 (54%), Positives = 427/598 (70%), Gaps = 7/598 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
+ RN+A+IAHVDHGKTTLVD LLKQ+ L +E+AERAMDSN LE+ERGITILAKNTAV
Sbjct: 2 EYRNIAIIAHVDHGKTTLVDGLLKQTLELKHGEEIAERAMDSNDLERERGITILAKNTAV 61
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
EYNG +INI+DTPGHADFGGEVER++ MVDG +++VDA EG MPQTRFVLKKA+E L P
Sbjct: 62 EYNGVKINIVDTPGHADFGGEVERVLGMVDGALVLVDAAEGPMPQTRFVLKKAIELGLKP 121
Query: 130 IVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMS-DNPADQE 188
IVVVNKID+ ARP EVV+ +L ELGA+D+QLDFPV+YA A G + + P D
Sbjct: 122 IVVVNKIDRNDARPEEVVNLTFDLMAELGANDDQLDFPVLYAIAREGKAFKDLEQPRDD- 180
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
+FD +++HIP P + D P Q V+ LDY++Y T+K G+ V L
Sbjct: 181 --FKELFDMVLEHIPAPKVDLDSPFQMLVTNLDYSEYLGRIVLGRVARGTVKKGEFVQLM 238
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
DG+ RV + F GL R E+ E AGD++AL+G+ED +GET+ E LPI+
Sbjct: 239 HKDGTMTKSRVVQPFTHLGLKRIEVDEVGAGDIVALAGIEDAQIGETIADLAEPEALPII 298
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
+DEPT+ MTF N SPFAG+EGK+VTSR + +RL E+ T+VSL+VE PD++VVSG
Sbjct: 299 TVDEPTVSMTFQPNTSPFAGKEGKYVTSRHLNDRLKREVMTNVSLKVEEVR-PDEFVVSG 357
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGELHLSIL+ETMRREGYE+QV P VII+EIDG EP E + ID PE++ ++I L
Sbjct: 358 RGELHLSILLETMRREGYEVQVGSPRVIIREIDGEKHEPIEHLVIDVPEQHASTVIGVLG 417
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
RKG M++M+ G+ + R+ F +PAR L GF T+F+SMT+G GIM+H FD Y P GE+
Sbjct: 418 ARKGQMVNMEPQGS-RVRVEFKIPARALFGFRTQFLSMTQGEGIMSHIFDGYAPWA-GEL 475
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
R GSL+SM+ G +Y++ +Q+RG F+DAG EVY GMIVGE++R+ D+ VN+ K
Sbjct: 476 KTRQNGSLVSMEDGTSFAYSIWKLQDRGNFFIDAGQEVYVGMIVGENAREQDMNVNVCKN 535
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMRE 606
K+ TNVRSS D L PK LSLE++LE++ DD+ +E+TP+SIRLRK++L+ + R+
Sbjct: 536 KKLTNVRSSGADEALTLIPPKRLSLEDALEYIADDELVELTPQSIRLRKKVLNPSFRK 593
sp|P72749|TYPA_SYNY3 GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG >gi|1651837|dbj|BAA16764|
(D90900) elongation factor EF-G [Synechocystis sp.]
Length = 597
Score = 631 bits (1610), Expect = e-180
Identities = 314/595 (52%), Positives = 427/595 (70%), Gaps = 3/595 (0%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRNVA+IAHVDHGKTTLVD LLKQS +++ MDSN LE+ERGITIL+KNTAV
Sbjct: 5 IRNVAIIAHVDHGKTTLVDALLKQSGIFREGEDVPVCVMDSNDLERERGITILSKNTAVR 64
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
Y T INI+DTPGHADFGGEVER++ MVDG VL+VDA EG MPQTRFVLKKALE+ L P+
Sbjct: 65 YQDTLINIVDTPGHADFGGEVERVLGMVDGCVLIVDANEGPMPQTRFVLKKALEKGLRPL 124
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHT 190
VVVNKID+P A P VD+V +LF+ELGADD+Q DF ++AS + G + S + D
Sbjct: 125 VVVNKIDRPRADPNTAVDKVFDLFVELGADDDQCDFTTLFASGLGGFAKESLD--DDSED 182
Query: 191 MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKL 250
M +F+ I+ H+P P + ++PLQ QV+ LDY+DY T+K G L K
Sbjct: 183 MKPLFEAILHHVPPPAGDPNKPLQLQVTTLDYSDYLGRIIIGRIHNGTVKAGQQAALVKE 242
Query: 251 DGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHI 310
DGS +V+KL GF GL+R E+ EA AG ++A++G D +GET+T D + LP++ +
Sbjct: 243 DGSIAKGKVSKLLGFEGLNRIELPEASAGYIVAIAGFADANIGETLTCPDEPQALPLIKV 302
Query: 311 DEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRG 370
DEPTLQMTF N+SPFAG+EGK+VTSR++ +RL EL+T+V+LRVE+ ES ++++VSGRG
Sbjct: 303 DEPTLQMTFSVNDSPFAGQEGKFVTSRQIRDRLNRELETNVALRVEDGESAEQFLVSGRG 362
Query: 371 ELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSER 430
ELHL ILIETMRREGYE QV++P+VI +E++G CEP E + +D PE G+ I+ L +R
Sbjct: 363 ELHLGILIETMRREGYEFQVAQPQVIYREVNGQPCEPVEYLVLDVPEAAVGACIERLGQR 422
Query: 431 KGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIGG 490
+G+M DMQ + NG+ +L F++PARGL+GF +F+ +TRG GIMNH+F +Y P + G++
Sbjct: 423 RGEMQDMQTSVNGRTQLEFVIPARGLLGFRGDFIRITRGEGIMNHSFLEYRP-MSGDLET 481
Query: 491 RHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKMKQ 550
R+ G +++ + G T YAM ++RG F+ GT+VY GMI+GEH+R D+ +N+ K KQ
Sbjct: 482 RYNGVMVAFEEGVATFYAMKNAEDRGVFFITPGTKVYKGMIIGEHNRPQDIELNVCKTKQ 541
Query: 551 QTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMR 605
TN RS+ D L P+ ++LE +LE++G D+ +E+TPESIRLRK K ++
Sbjct: 542 LTNHRSATGDELVQLQAPEDMNLERALEYIGPDELVEITPESIRLRKVARKKLVK 596
sp|P44910|TYPA_HAEIN GTP-BINDING PROTEIN TYPA/BIPA HOMOLOG >gi|1074543|pir||G64160
hypothetical protein HI0864 - Haemophilus influenzae
(strain Rd KW20) >gi|1573881 (U32768) GTP-binding
protein [Haemophilus influenzae Rd]
Length = 616
Score = 631 bits (1610), Expect = e-180
Identities = 317/601 (52%), Positives = 429/601 (70%), Gaps = 3/601 (0%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD-ARKELAERAMDSNALEQERGITILAKNTAV 69
+RN+A+IAHVDHGKTTLVD+LL+QS T + AR ++ ER MDSN LE+ERGITILAKNTA+
Sbjct: 10 LRNIAIIAHVDHGKTTLVDKLLQQSGTFESARGDVDERVMDSNDLEKERGITILAKNTAI 69
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
+N RINI+DTPGHADFGGEVER++ MVD V+LVVDA++G MPQTRFV +KA L P
Sbjct: 70 NWNDYRINIVDTPGHADFGGEVERVLSMVDSVLLVVDAFDGPMPQTRFVTQKAFAHGLKP 129
Query: 130 IVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEH 189
IVV+NK+D+P ARP VVD+V +LF+ LGA DEQLDFP++YASA+NG + + D
Sbjct: 130 IVVINKVDRPGARPDWVVDQVFDLFVNLGASDEQLDFPIIYASALNGVAGLEHE--DLAE 187
Query: 190 TMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSK 249
M +F+ I+ H+ P D P Q Q+S LDYN+Y +IK VT+
Sbjct: 188 DMTPLFEAIVKHVEPPKVELDAPFQMQISQLDYNNYVGVIGIGRIKRGSIKPNQPVTIIN 247
Query: 250 LDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILH 309
+G T+ R+ ++ G GL R E A AGD++A++G+ ++ + +T+ + VE LP L
Sbjct: 248 SEGKTRQGRIGQVLGHLGLQRYEEDVAYAGDIVAITGLGELNISDTICDINTVEALPSLT 307
Query: 310 IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGR 369
+DEPT+ M F N SPFAG+EGK+VTSR++ ERL EL +V+LRVE T +PD++ VSGR
Sbjct: 308 VDEPTVTMFFCVNTSPFAGQEGKYVTSRQILERLNKELVHNVALRVEETPNPDEFRVSGR 367
Query: 370 GELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSE 429
GELHLS+LIE MRREGYEL VSRP+VI ++IDG EP+E+V ID E++QGS+++AL
Sbjct: 368 GELHLSVLIENMRREGYELAVSRPKVIYRDIDGKKQEPYEQVTIDVEEQHQGSVMEALGI 427
Query: 430 RKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIG 489
RKG++ DM G G+ RL +++P+RGLIGF +FM+MT G G++ +F Y GEIG
Sbjct: 428 RKGEVRDMLPDGKGRVRLEYIIPSRGLIGFRGDFMTMTSGTGLLYSSFSHYDEIKGGEIG 487
Query: 490 GRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKMK 549
R G LIS +G+ YA+ +QERG+L +DA EVY G I+G HSR NDLTVN + K
Sbjct: 488 QRKNGVLISNATGKALGYALFGLQERGKLMIDANIEVYEGQIIGIHSRSNDLTVNCLQGK 547
Query: 550 QQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKST 609
+ TN+R+S KD VL TP SLE+++EF+ DD+ +EVTPESIR+RK++L + R+++
Sbjct: 548 KLTNMRASGKDDAIVLTTPVKFSLEQAIEFIDDDELVEVTPESIRIRKKLLTENDRKRAN 607
Query: 610 K 610
+
Sbjct: 608 R 608
emb|CAB72532.1| (AL139074) GTP-binding protein typA homolog [Campylobacter jejuni]
Length = 602
Score = 630 bits (1607), Expect = e-179
Identities = 311/604 (51%), Positives = 435/604 (71%), Gaps = 4/604 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E+IRN+AVIAHVDHGKTT+VDELLKQS T R++++ER MDSN +E+ERGITIL+KNTA
Sbjct: 2 ENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDSNDIEKERGITILSKNTA 61
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ Y GT+INI+DTPGHADFGGEVER++KM+DGV+L+VDA EG MPQT+FV+KKAL L
Sbjct: 62 INYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQEGVMPQTKFVVKKALSLGLK 121
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVV+NKIDKP+A P V++E+ +LF+ L A+DEQLDF +VYA+A NG + + N D+
Sbjct: 122 PIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFAIVYAAAKNGYAKLDLN--DES 179
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M +F TI++ +P P + + PLQ QV L Y+++ +K SV L+
Sbjct: 180 DNMEPLFKTILERVPAPSGSDENPLQLQVFTLGYDNFVGKIGIARIFNGVVKKNQSVMLA 239
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
K DG+ N R++KL GF GL++ +I+EA +GD++A++G E + VG++V ++ PL L
Sbjct: 240 KADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIAGFEALDVGDSVVDPNNPMPLDPL 299
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
HI+EPTL + F N+ P AG EGK VTS K+ ERL +E++T+++++ E+T K+ VSG
Sbjct: 300 HIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERLEAEMKTNIAMKYEST-GEGKFKVSG 358
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGEL ++IL E MRREG+E + RPEVI+K DGV EPFE + ID PEE+ G++I+ L
Sbjct: 359 RGELQITILAENMRREGFEFCMGRPEVIVKVEDGVKTEPFEHLVIDVPEEFSGAVIEKLG 418
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
+RK +M M TG+GQ RL F +PARGLIGF ++F++ T+G G+MNH+F ++ P G +
Sbjct: 419 KRKAEMKTMAPTGDGQTRLEFEIPARGLIGFRSQFLTDTKGEGVMNHSFLEFRP-FSGAV 477
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
R+ G+LISM++G Y++ +QERG LF++ T+VY GMI+GEHSR NDL VN K
Sbjct: 478 EKRNNGALISMENGVALGYSLFNLQERGVLFIEPQTKVYTGMIIGEHSRPNDLDVNPIKG 537
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREKS 608
K TNVR+S D L P+ LSLE +LE++ +D+ +EVTP ++R+RK+ LD R++
Sbjct: 538 KNLTNVRASGSDDAIKLVPPRKLSLERALEWIEEDELVEVTPVNVRVRKRYLDPTQRKRM 597
Query: 609 TKKK 612
K K
Sbjct: 598 EKAK 601
gi|3047405 (AF058333) tyrosine phosphorylated protein A [Escherichia coli]
Length = 588
Score = 630 bits (1607), Expect = e-179
Identities = 314/588 (53%), Positives = 416/588 (70%), Gaps = 2/588 (0%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E +RN+A+IAHVDHGKTTLVD+LL+QS T D+R E ER MDSN LE+ERGITILAKNTA
Sbjct: 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTA 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+++N RINI+DTPGHADFGGEVER+M MVD V+LVVDA++G MPQTRFV KKA L
Sbjct: 63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLK 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
PIVV+NK+D+P ARP VVD+V +LF+ A DEQLDFP+VYASA+NG + + D
Sbjct: 123 PIVVINKVDRPGARPDWVVDQVFDLFVNFDATDEQLDFPIVYASALNGIAGLDHE--DMA 180
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M ++ I+DH+P P + D P Q Q+S LDYN Y +K VT+
Sbjct: 181 EDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTII 240
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
+G T+N +V K+ G GL+R E A+AGD++A++G+ ++ + +TV + +VE LP L
Sbjct: 241 DSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPAL 300
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
+DEPT+ M F N SPF G+EGK+VTSR++ +RL EL +V+LRVE TE D + VSG
Sbjct: 301 SVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSG 360
Query: 369 RGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALS 428
RGELHLS+LIE MRREG+EL VSRP+VI +EIDG EP+E V +D +++QGS++QAL
Sbjct: 361 RGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYENVTLDVEQQHQGSVMQALG 420
Query: 429 ERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEI 488
ERKGD+ +M G G+ RL +++P+RGLIGF +EFM+MT G G++ TF Y GE+
Sbjct: 421 ERKGDLKNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEV 480
Query: 489 GGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITKM 548
G R G LIS G+ ++A+ +Q+RG+LF+ G EVY G I+G HSR NDLTVN
Sbjct: 481 GQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTG 540
Query: 549 KQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLR 596
K+ TN+R+S D VL P ++LE++LEF+ DD +EVTP SIR+R
Sbjct: 541 KKLTNMRASGTDEAVVLVPPIRMTLEQALEFIHDDKLVEVTPISIRIR 588
emb|CAA14725| (AJ235271) unknown [Rickettsia prowazekii]
Length = 605
Score = 571 bits (1455), Expect = e-162
Identities = 295/603 (48%), Positives = 419/603 (68%), Gaps = 4/603 (0%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN+A+IAHVDHGKTTL+D +LKQS T A + +AERAMD N LE+ERGITILAK TA+
Sbjct: 4 IRNIAIIAHVDHGKTTLIDNMLKQSGTFRANQAVAERAMDFNELERERGITILAKCTALM 63
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+N RINI+DTPGHADFGGEVERI+ MVDGVVL+VDA EG MPQT+FVL KAL L PI
Sbjct: 64 WNEIRINIVDTPGHADFGGEVERILSMVDGVVLLVDASEGPMPQTKFVLSKALNLGLKPI 123
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMS-DNPADQEH 189
VV+NKID+ R EV+DEV ELF+ L AD++QLDFP+VYAS G++S++ DN +
Sbjct: 124 VVINKIDRDDQRIKEVIDEVFELFVALEADNDQLDFPIVYASGRAGTASLNFDNKINPLD 183
Query: 190 TMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV-TLS 248
+A +F+ I+ H+P P + P V+ +YN + T+K+ +V L+
Sbjct: 184 NLAPLFNLIVTHVPTPAADHKAPFSMLVTTREYNPFFGRVLTGRVQSGTLKINQNVQVLN 243
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPIL 308
+ + R+TK+ F GL+R I AKAGD+IA++G+E+ V +T+ + + +P L
Sbjct: 244 HENKVLETGRITKILAFRGLERIAIDNAKAGDIIAVAGVENANVSDTICAPEVTKAIPSL 303
Query: 309 HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSG 368
ID PTL MTF N+SP AG EG +TS + RL+ EL+++V+L+V T + + V+G
Sbjct: 304 PIDPPTLSMTFSINDSPLAGSEGTKITSSLIGARLMRELESNVALKVTETTDKNTFQVAG 363
Query: 369 RGELHLSILIETMRREGYELQVSRPEVII-KEIDGVACEPFERVQIDTPEEYQGSIIQAL 427
RGEL LSILIETMRREG+EL +SRPEV+ + G EP E +QID ++Y G ++++L
Sbjct: 364 RGELQLSILIETMRREGFELSISRPEVLCHTDKKGNKQEPIEEIQIDVDDDYVGVVVKSL 423
Query: 428 SERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGE 487
+ RK +M +++ +G G++R+ F+ P+RGLIG+ ++F++ TRG GI+N F Y KG
Sbjct: 424 ALRKAEMTNIRPSGGGKSRITFIGPSRGLIGYYSQFLTETRGTGIINRIFYGYTD-YKGP 482
Query: 488 IGGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLTVNITK 547
I GR +G LIS G+ +YA+ ++ERG++F++ G +VY GMI+GEH+RDNDL VN K
Sbjct: 483 IEGRRKGVLISNCDGEAVTYALWNLEERGKMFINPGDKVYRGMIIGEHNRDNDLDVNPLK 542
Query: 548 MKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDKAMREK 607
KQ +NVR++ KD L P +L+LE+++ ++ DD+ +EVTP+SIRLRK +L+ R++
Sbjct: 543 AKQLSNVRAAGKDEAIRLTPPMLLTLEQAISYIQDDELVEVTPKSIRLRKALLNPNDRKR 602
Query: 608 STK 610
+ K
Sbjct: 603 AAK 605
emb|CAB09037| (Z95584) hypothetical protein Rv1165 [Mycobacterium tuberculosis]
Length = 628
Score = 498 bits (1269), Expect = e-140
Identities = 276/623 (44%), Positives = 391/623 (62%), Gaps = 22/623 (3%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEY 71
RNVA++AHVDHGKTTLVD +L+QS L R EL ER MD+ LE+E+GITILAKNTAV
Sbjct: 4 RNVAIVAHVDHGKTTLVDAMLRQSGALRERGELQERVMDTGDLEREKGITILAKNTAVHR 63
Query: 72 NG-----TRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+ T IN++DTPGHADFGGEVER + MVDGV+L+VDA EG +PQTRFVL+KAL +
Sbjct: 64 HHPDGTVTVINVIDTPGHADFGGEVERGLSMVDGVLLLVDASEGPLPQTRFVLRKALAAH 123
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD---------DEQLDFPVVYASAINGS 177
L I+VVNK D+P AR AEVVD +L +++ +D + L P +YAS G
Sbjct: 124 LPVILVVNKTDRPDARIAEVVDASHDLLLDVASDLDDEAAAAAEHALGLPTLYASGRAGV 183
Query: 178 SSMSDNPADQEHTMANI---FDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXX 234
+S + P Q N+ F+ + H+P P D PLQ V+ LD + +
Sbjct: 184 ASTTAPPDGQVPDGTNLDPLFEVLEKHVPPPKGEPDAPLQALVTNLDASTFLGRLALIRI 243
Query: 235 XXXTIKVGDSVT-LSKLDG--STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIF 291
I+ G V + ++DG + ++T+L G++R+ A AGD++A++G+ +I
Sbjct: 244 YNGRIRKGQQVAWIRQVDGQQTVTTAKITELLATEGVERKPTDAAVAGDIVAVAGLPEIM 303
Query: 292 VGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKW-VTSRKVEERLVSELQTD 350
+G+T+ S + LP + +DEP + +T N SP AG+ G +T+R V RL +EL +
Sbjct: 304 IGDTLAASANPVALPRITVDEPAISVTIGTNTSPLAGKVGGHKLTARMVRSRLDAELVGN 363
Query: 351 VSLRVENTESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFER 410
VS+RV + +PD W V GRGEL L++L+E MRREG+EL V +P+V+ K IDG EPFE
Sbjct: 364 VSIRVVDIGAPDAWEVQGRGELALAVLVEQMRREGFELTVGKPQVVTKTIDGTLHEPFES 423
Query: 411 VQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGY 470
+ +D PEEY G++ Q ++ RKG M++M G R+ F+VP+RGLIG+ T+F++ TRG
Sbjct: 424 MTVDCPEEYIGAVTQLMAARKGRMVEMANHTTGWVRMDFVVPSRGLIGWRTDFLTETRGS 483
Query: 471 GIMNHTFDQYLPAVKGEIGGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGM 530
G+ + FD Y P GEI RH GSL+S +G +T +A+ + +RGQ FV+ G + Y GM
Sbjct: 484 GVGHAVFDGYRPWA-GEIRARHTGSLVSDRAGAITPFALLQLADRGQFFVEPGQQTYEGM 542
Query: 531 IVGEHSRDNDLTVNITKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTP 590
+VG + R DL +N+T+ K+ TN+RSS D L P L LE ++E D+ +EVTP
Sbjct: 543 VVGINPRPEDLDINVTREKKLTNMRSSTADVIETLAKPLQLDLERAMELCAPDECVEVTP 602
Query: 591 ESIRLRKQILDKAMREKSTKKKK 613
E +R+RK L A R +S + K
Sbjct: 603 EIVRIRKVELAAAARARSRARTK 625
gb|AAC63846.1| (AC005311) putative GTP-binding protein [Arabidopsis thaliana]
Length = 664
Score = 481 bits (1226), Expect = e-135
Identities = 264/611 (43%), Positives = 387/611 (63%), Gaps = 14/611 (2%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
+RNVAVIAHVDHGKTTL+D LL+Q ERAMDS LE+ERGITI +K T++
Sbjct: 59 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPH----ERAMDSINLERERGITISSKVTSIF 114
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+ +N++DTPGHADFGGEVER++ MV+G +LVVDA EG + QT+FVL KAL+ L PI
Sbjct: 115 WKDNELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI 174
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING--SSSMSDNPADQE 188
+++NK+D+PS R EV V +LF GA +EQLDFPV+YASA G SS+ + +P
Sbjct: 175 LLLNKVDRPSERCDEVESLVFDLFANCGATEEQLDFPVLYASAKEGWASSTYTKDPPVDA 234
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT-L 247
MA++ D ++ H+ P N DEP VS+++ + Y ++VGD V L
Sbjct: 235 KNMADLLDAVVRHVQPPKANLDEPFLMLVSMMEKDFYLGRILTGRVTSGVVRVGDRVNGL 294
Query: 248 SKLDGSTKNF---RVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP 304
K D ++ +V KL G I A AGD+I ++G+ +G TV ++
Sbjct: 295 RKTDSGSEKIEEAKVVKLMKKKGTTIVSIDAAGAGDIICMAGLTAPSIGHTVASAEVTTA 354
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
LP + +D PT+ MTF N+SP AG++G +T ++ +RL++E +T++++ V S + +
Sbjct: 355 LPTVELDPPTISMTFGVNDSPLAGQDGTHLTGGRIGDRLMAEAETNLAINVIPGLS-ESY 413
Query: 365 VVSGRGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSII 424
V GRGEL L ILIE MRREG+EL VS P+V+ K G EP E V I+ +E+ G ++
Sbjct: 414 EVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEKGQKLEPIEEVTIEINDEHVGLVM 473
Query: 425 QALSERKGDMLDM-QITGN-GQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLP 482
+ALS R+ +++DM + GN G+ RL P+RGL+G+ F S TRG G M+ F Y
Sbjct: 474 EALSHRRAEVIDMGPVPGNEGRTRLSLTCPSRGLVGYRCVFSSDTRGTGFMHRAFLTY-E 532
Query: 483 AVKGEIGGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEVYGGMIVGEHSRDNDLT 542
+G +G +G L+SM G +T++++ ++ RG LFV G + Y GMI+GEHSR+ DL
Sbjct: 533 KYRGPLGNVRKGVLVSMARGTITAHSLMSLEARGILFVSPGLDSYDGMIIGEHSRETDLD 592
Query: 543 VNITKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYLEVTPESIRLRKQILDK 602
+N K K+ TN+RS+ KD L+ P++++LEE++ ++ D+ +EVTP++IRLRK+ LD
Sbjct: 593 LNPVKAKELTNIRSAGKDENVKLSPPRLMTLEEAIGYVASDELIEVTPKTIRLRKRCLDV 652
Query: 603 AMREKSTKKKK 613
R+ +K+ K
Sbjct: 653 NKRKSQSKRAK 663
sp|O93640|EF2_METTE ELONGATION FACTOR 2 (EF-2) >gi|3924929 (AF026165) elongation factor
2; EF-2 [Methanosarcina thermophila]
Length = 730
Score = 190 bits (477), Expect = 3e-47
Identities = 160/557 (28%), Positives = 257/557 (45%), Gaps = 98/557 (17%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E IRN+ ++AH+DHGKTTL D LL + + KELA R MDS+ EQERGITI A N
Sbjct: 19 EKIRNIGIVAHIDHGKTTLSDNLLAGAGMIS--KELAGRQLFMDSDEEEQERGITIDASN 76
Query: 67 TAV--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
++ YN IN++DTPGH DFGG+V R M+ VDG V+VVDA EGTMPQT VL++A
Sbjct: 77 VSMVHTYNNEDYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVDAVEGTMPQTETVLRQA 136
Query: 123 LEQNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQLDFPVVYA 171
L +++ P++ VNK+D+ R +V+D V +L + + + + V A
Sbjct: 137 LREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDHVNKLIKNMNPEKFKAGWKVDAA 196
Query: 172 SAINGSSSMSDNPADQEHTM-----------------------------ANIFDTIIDHI 202
+ S N A M A + D +I +
Sbjct: 197 AGTVAFGSALYNWAISVPMMQKTGISFTNVYDYCKAEDMKALAEKCPLHATVLDMVIRFL 256
Query: 203 PGPVD-------------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXX 237
P P++ N+D L F V+ + + +
Sbjct: 257 PNPLEAQKGRVPTIWHGDANSEIGKSMASANADGDLAFMVTDISIDPHAGEVATGRLFSG 316
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
+ G V +S G+ + RV ++ F G +R E+++ AG++ A++G++D VG TVT
Sbjct: 317 SFSRGMEVYIS---GTARKSRVQQVGIFMGPERLEVEKIPAGNIAAVTGLKDAIVGSTVT 373
Query: 298 PSDHVEPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
D + P I H+ EP + + A ++ K+ E L + D +L++
Sbjct: 374 TLDGMTPFESIRHVSEPVVTVAVEAKHTK---------DLPKLVEVLRQVAKEDPTLQIT 424
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACEPFERVQIDT 415
E + +++G GELHL ++ ++R+ E+ S+P V+ +E EP E +
Sbjct: 425 LDEETGEHLMAGMGELHLEVIAHRIQRDKNVEITTSKPIVVYRETIKKKIEPVEGKSPNR 484
Query: 416 PEE---YQGSIIQALSE--RKGDMLDMQITGNGQARLIFL----VPARGLIGF--TTEFM 464
Y + A+ E + GD+ + +LI L A+G++G + F+
Sbjct: 485 HNRFYIYVEPLDTAIVEMIKSGDISMNLPELERRQKLIELGMGKEEAKGIVGIHNSNIFI 544
Query: 465 SMTRGYGIMNHTFDQYL 481
+T+G +N T + L
Sbjct: 545 DITKGIQYLNETMELIL 561
sp|O93632|EF2_METBU ELONGATION FACTOR 2 (EF-2) >gi|3924906 (AF003869) EF-2
[Methanococcoides burtonii]
Length = 730
Score = 181 bits (454), Expect = 2e-44
Identities = 137/470 (29%), Positives = 229/470 (48%), Gaps = 92/470 (19%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
IRN+ ++AH+DHGKTTL D LL + + KELA R MDS+A EQERGITI + N +
Sbjct: 21 IRNIGIVAHIDHGKTTLSDNLLAGAGMIS--KELAGRQLFMDSDAEEQERGITIDSSNVS 78
Query: 69 V--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ EY G IN++DTPGH DFGG+V R M+ VDG V+V+DA EGTMPQT VL++AL+
Sbjct: 79 MVHEYEGKEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALK 138
Query: 125 QNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQ---------- 163
+++ P++ +NK+D+ R +++D V +L G ++E+
Sbjct: 139 EHVKPVLFINKVDRLINELQVDDQEMQIRLGKLIDHVNKLI--KGMNEERYNAGWRVDAA 196
Query: 164 --------------LDFPVVYASAINGSSSMSDNPADQEHTMAN-------IFDTIIDHI 202
+ P++ + ++ S + + ++A + D +I +
Sbjct: 197 EGTVAFGSALYNWAISVPMMKKTGVSFSEVFNYCREEDMKSLAEKCPLHEAVNDMVIRFL 256
Query: 203 PGPVD-------------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXX 237
P P+D ++ + F V+ + + +
Sbjct: 257 PSPIDAQKGRVGAIWHGDHESGIGKQMSVADAKGDVAFMVTDISMDPHAGEVSTGRLFSG 316
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
++ G V +S G++K R+ ++ F G +R E+ AG++ A++G+ D FVG TVT
Sbjct: 317 SLSRGMEVYVS---GASKTNRIQQVGVFMGPERLEVDAIPAGNIAAVTGLRDAFVGATVT 373
Query: 298 PSDHVEPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
+ +EP I H EP + + A + K+ E L + D +L++
Sbjct: 374 TLEGMEPFESIKHASEPVVTVAVEAKHMK---------DLPKLVEVLRQVAKEDPTLKIT 424
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE-IDGVA 404
E + +++G GELHL ++ + R+ G E+ + P V+ +E I G A
Sbjct: 425 LDEETGEHLMAGMGELHLEVIAHRIERDKGVEITTTPPLVVYRETITGTA 474
sp|O27131|EF2_METTH ELONGATION FACTOR 2 (EF-2) >gi|2622156 (AE000876) translation
elongation factor, EF-2 [Methanobacterium
thermoautotrophicum]
Length = 733
Score = 181 bits (454), Expect = 2e-44
Identities = 151/567 (26%), Positives = 256/567 (44%), Gaps = 117/567 (20%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN+ ++AH+DHGKTTL D LL + + A +R +D + EQ RGITI A N +
Sbjct: 22 EYIRNIGIVAHIDHGKTTLSDNLLAGAGMISAELAGDQRFLDFDEQEQARGITIDAANVS 81
Query: 69 V----EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ E N IN++DTPGH DFGG+V R M+ VDG V+VV A EG MPQT VL++AL+
Sbjct: 82 MVHSYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVVCAVEGIMPQTETVLRQALK 141
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL-------------------- 164
+N+ P++ +NK+D+ E+ E F+++ A+ +L
Sbjct: 142 ENVRPVLFINKVDRLINELKLDASELQERFVKIIANANKLIKNMAPEEFRDKWQVRVEDG 201
Query: 165 -------------DFPVVYASAINGSSSMSDNPADQEHTMAN-------IFDTIIDHIPG 204
+ P++ + IN + D + +A + +++H+P
Sbjct: 202 SVAFGSAYHNWAINVPIMQETGINFNDIYKYCTEDNQKELAQKVPLHQVLLGMVVEHLPS 261
Query: 205 PVDNS-------------------------DEPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
P ++ + PL V+ + + + I
Sbjct: 262 PAESQAYRVPIIWSGDLESEEGQAMLKTDPEGPLAVMVTDVSIDKHAGEVATGRVYGGAI 321
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
+ G V L GS RV ++ + G +R + AG+++A++G ++ GET+ +
Sbjct: 322 EKGSEVFLV---GSHSKARVQQVGVYMGPERVNTDKVPAGNIVAITGAKNAVAGETICDT 378
Query: 300 DH-VEPLPIL-HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVEN 357
++ L HI EP + + A N+ K+ E L + D ++RVE
Sbjct: 379 GRKIKAFEGLEHISEPVVTVAVEAKNTK---------DLPKLIEVLRQVGKEDPTVRVEI 429
Query: 358 TESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKE--------IDGVACEPFE 409
E + ++SG GELHL I+ + +G E++ S P V+ +E ++G +
Sbjct: 430 NEETGEHLISGMGELHLEIIAYRINEKGVEIETSEPIVVYRETVAGTAGPVEGKSPNKHN 489
Query: 410 RVQIDTPEEYQGSIIQALSE---RKGDMLDMQITGN--------GQARLIFLVPARGLIG 458
R I+ E + S++QA+ E ++G + ++ N +AR ++ V + L
Sbjct: 490 RFYIEI-EPVEASVMQAIQEGKIKEGRVKGKEMAKNFIEAGMDKEEARRVWDVYEKNL-- 546
Query: 459 FTTEFMSMTRGYGIMNHTFDQYLPAVK 485
F++MTRG QYL +K
Sbjct: 547 ----FINMTRGI--------QYLDEIK 561
gi|3808292 (AF072440) GTPase [Enterobacter gergoviae]
Length = 116
Score = 180 bits (451), Expect = 4e-44
Identities = 86/114 (75%), Positives = 101/114 (88%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E++RN+A+IAHVDHGKTTLVD+LL+QS T DAR E ER MDSN LE+ERGITILAKNTA
Sbjct: 3 ENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARTEAQERVMDSNDLEKERGITILAKNTA 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+++N RINI+DTPGHADFGGEVER+M MVD V+LVVDA++G MPQTRFV KKA
Sbjct: 63 IKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKA 116
sp|P14823|EF2_HALHA ELONGATION FACTOR 2 (EF-2) >gi|99187|pir||S07558 translation
elongation factor aEF-2 - Halobacterium halobium
>gi|43496|emb|CAA35029| (X17148) EF-2 (AA 1-728)
[Halobacterium halobium] >gi|226716|prf||1604196B
elongation factor 2 [Halobacterium halobium]
Length = 728
Score = 178 bits (448), Expect = 9e-44
Identities = 133/462 (28%), Positives = 214/462 (45%), Gaps = 83/462 (17%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN+A+ AHVDHGKTTL D LL + + + AMD+ EQERGITI A N +
Sbjct: 19 EQIRNIAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVS 78
Query: 69 V--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ EY G IN++DTPGH DFGG+V R M+ VDG ++VVDA EG MPQT V+++AL
Sbjct: 79 MTHEYEGDDHLINLIDTPGHVDFGGDVTRAMRAVDGALVVVDAVEGAMPQTETVVRQALR 138
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL-------------------D 165
+ + P + +NK+D+ + E +E+ E + + D +L D
Sbjct: 139 EGVKPTLFINKVDRLISELQEGPEEMQERLLSVIGDVNELIRGMTEEKDDIEDWTVSVED 198
Query: 166 FPVVYASAIN--GSSSMS----------------DNPADQEHTMANIFDTIID----HIP 203
V + SA+ G S S + ++ H + D ++D H P
Sbjct: 199 GTVAFGSALYKWGVSMPSMQRTGMDFGDIIDLERSDKREELHEQTPLADVVLDMVAEHFP 258
Query: 204 GPVD------------NSDEPLQFQVSLLD-------------YNDYXXXXXXXXXXXXT 238
P+D ++D + + L+D + + T
Sbjct: 259 NPIDAQPRRIPTVWRGDADSEIAASMRLVDEDGEVVLMVTDIGVDPHAGEIAAGRVFSGT 318
Query: 239 IKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTP 298
++ G + +S G+ RV + + G +R+E+ E AG++ A++G++D G TV+
Sbjct: 319 LEKGQELYVS---GTAGKNRVQSVGIYMGGEREEVDEVPAGNIAAVTGLKDAIAGSTVSN 375
Query: 299 SDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENT 358
+ I HI EP + + A N K+ E L + D ++ +E
Sbjct: 376 EEMTPFESIDHISEPVITKSIEAQNMD---------DLPKLIETLRQVSKEDPTISIEIN 426
Query: 359 ESPDKWVVSGRGELHLSILIETM-RREGYELQVSRPEVIIKE 399
E + ++SG+GELHL + + + R +G + P V+ +E
Sbjct: 427 EDTGEHLISGQGELHLEVQTQRIERNQGIPVTTGEPIVVYRE 468
sp|O28385|EF2_ARCFU ELONGATION FACTOR 2 (EF-2) >gi|2648651 (AE000972) translation
elongation factor EF-2 (fus) [Archaeoglobus fulgidus]
Length = 728
Score = 178 bits (447), Expect = 1e-43
Identities = 159/563 (28%), Positives = 249/563 (43%), Gaps = 115/563 (20%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV- 69
IRN+ ++AH+DHGKTTL D LL + + + +D + EQERGITI A N ++
Sbjct: 20 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMV 79
Query: 70 -EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
EY G IN++DTPGH DFGG+V R M+ VDGV++VVDA EG MPQT VL++AL++N
Sbjct: 80 HEYEGQDYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDAVEGVMPQTETVLRQALKEN 139
Query: 127 LTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADD-EQLDFPVVYASAI 174
+ P++ VNK+D+ R +V+ EV +L + D + V SA
Sbjct: 140 VKPVLFVNKVDRLIKELELTPQQMQERLIKVITEVNKLIKAMRPDKYSEWKIDVANGSAA 199
Query: 175 NGSSSMS---DNPADQ----------EHTMAN--------------IFDTIIDHIPGPVD 207
GS+ + P+ + EH + D +I H+P P++
Sbjct: 200 FGSALYNWAVSVPSQKKTGIGFKEVYEHIKEGKVKELAKKSPLYQVVLDMVIRHLPSPIE 259
Query: 208 NSDE-------------------------PLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
E P+ ++ + TI+ G
Sbjct: 260 AQKERIAVIWKGDINSEVGKAMVNCDPKGPVALMITKIVVEPQAGEIAVGRLYSGTIRPG 319
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHV 302
+ L +D KN R+ + + G R E+ E AG+++A+ G++D G T T +++
Sbjct: 320 --MELYIVDRKAKN-RIQTVGLYMGPRRVEVDEIPAGNIVAVIGLKDAVAGSTCTTVENL 376
Query: 303 EPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESP 361
P I H EP + M A N K+ E L + D +L + E
Sbjct: 377 TPFESIKHYSEPVVTMAIEAKNPR---------DLPKLIEVLRKLAKEDPTLHITLNEET 427
Query: 362 DKWVVSGRGELHLSILIETMRREGYELQV--SRPEVIIKE--------IDGVACEPFERV 411
+ ++SG GELHL + +E +RR+ Y+L V S P V+ +E ++G + R
Sbjct: 428 GEHLISGMGELHLEVKVEKIRRD-YKLDVITSPPIVVFRETVTGTSPVVEGKSPNKHNRF 486
Query: 412 QIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE--------- 462
I E +IQ E ++DM++ + RL+ G T+E
Sbjct: 487 YI-VVEPLPEKVIQMFKE---GVVDMKMDKKERRRLL------QEAGLTSEEAAGAEEYY 536
Query: 463 ----FMSMTRGYGIMNHTFDQYL 481
F +T+G +N T + L
Sbjct: 537 EGNLFCDVTKGIQYLNETMELIL 559
sp|O93637|EF2_METMT ELONGATION FACTOR 2 (EF-2) >gi|3924925 (AF022779) elongation factor
2 [Methanococcoides methylutens]
Length = 730
Score = 174 bits (437), Expect = 2e-42
Identities = 134/470 (28%), Positives = 223/470 (46%), Gaps = 92/470 (19%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
IRN+A+IAH+DHGKTTL D LL + + K+LA R MDS+ EQERGITI + N +
Sbjct: 21 IRNIAIIAHIDHGKTTLSDNLLAGAGMIS--KDLAGRQLFMDSDEEEQERGITIDSANVS 78
Query: 69 V----EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ E IN++DTPGH DFGG+V R M+ VDG V+V+DA EGTMPQT VL++AL+
Sbjct: 79 MVHEFEDEEYLINLIDTPGHVDFGGDVTRAMRAVDGAVVVIDAVEGTMPQTETVLRQALK 138
Query: 125 QNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQ---------- 163
+++ P++ +NK+D+ R +++D V +L G ++E+
Sbjct: 139 EHVRPVLFINKVDRLINELQVDAQEMQIRLGKLIDHVNKLI--KGMNEERYNQGWRVDAA 196
Query: 164 --------------LDFPVVYASAINGSSSMSDNPADQEHTMAN-------IFDTIIDHI 202
+ P++ + ++ A+ ++ + D +I +
Sbjct: 197 EGTVAFGSALYNWAISVPMMQKTGVSFGEVFDYCRAEDMKSLGEKCPLHEAVNDMVIRFL 256
Query: 203 PGPVDNSDE-------------------------PLQFQVSLLDYNDYXXXXXXXXXXXX 237
P P+D ++ L F V+ + + +
Sbjct: 257 PSPIDAQEDRVGVIWHGDLEAGIGKQMAVADATGDLAFMVTDISMDPHAGEVSTGRLFSG 316
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
++ G V +S G+ K R+ ++ F G +R E+ + AG++ A++G+ D VG TVT
Sbjct: 317 SLSRGMEVYVS---GAAKPNRIQQVGVFMGPERLEVDKIPAGNIAAVTGLRDAIVGSTVT 373
Query: 298 PSDHVEPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
D + P I H EP + + A + K+ E L + D +L++
Sbjct: 374 TLDGMSPFESIRHASEPVVTVAVEAKHMK---------DLPKLVEVLRQVAKEDPTLKIT 424
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE-IDGVA 404
E + +++G GELHL ++ + R+ G E+ + P V+ +E I G A
Sbjct: 425 LDEETGEHLMAGMGELHLEVIAHRIERDKGVEISTTPPIVVYRETITGTA 474
sp|P74751|LEPA_SYNY3 GTP-BINDING PROTEIN LEPA >gi|1653961|dbj|BAA18871| (D90917) LepA
[Synechocystis sp.]
Length = 603
Score = 171 bits (430), Expect = 1e-41
Identities = 155/516 (30%), Positives = 239/516 (46%), Gaps = 71/516 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D LL+ + T+ R E+ E+ +D+ LE+ERGITI + +
Sbjct: 9 IRNFSIIAHIDHGKSTLADRLLQVTDTVQQR-EMKEQFLDNMDLERERGITIKLQAARMN 67
Query: 71 YNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y +N++DTPGH DF EV R + +G +LVVDA +G QT + AL+
Sbjct: 68 YKAKDGQDYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDN 127
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
NL I V+NKID PSA P V E+ E+ + L D ++ ASA G
Sbjct: 128 NLEIIPVLNKIDLPSAEPDRVAAEIEEV-VGLDCSD------IIQASAKAGIG------- 173
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ +I + I+ +P P D D+PL+ + Y+ Y +K GD V
Sbjct: 174 -----VDDILEAIVQQVPPPADTVDQPLRALIFDSYYDAYRGVVVYFRVMDGQVKKGDKV 228
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVT--PS 299
+L S K + + +L G + +++ AG++ A+ + D VG+T+T S
Sbjct: 229 ---RLMASDKEYVIDEL-GVLSPTQVQVEALHAGEVGYFAAAIKAVADARVGDTITMANS 284
Query: 300 DHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
EPLP P M F F ++ + E+L D +L E
Sbjct: 285 PAAEPLPGYTEANP---MVFC---GLFPIDADQYPDLKDALEKL---KLNDAALSYEPET 335
Query: 360 SPDK---WVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIK---------EIDGVAC- 405
S + G LH+ I+ E + RE +L + P VI + E+D +
Sbjct: 336 SSAMGFGFRCGFLGLLHMEIVQERLEREYNLDLITTAPSVIYRVTTTDEEVIEVDNPSLL 395
Query: 406 ----------EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-AR 454
EPF +V++ TPE Y G++++ R+G DM+ + LI+ +P A
Sbjct: 396 PPIQKRLKVEEPFIKVEMITPETYVGTLMELCQSRRGVFKDMKFFTQTRTALIYELPLAE 455
Query: 455 GLIGFTTEFMSMTRGYGIMNHTFDQYL--PAVKGEI 488
+ F + S T+GY M + Y P VK +I
Sbjct: 456 VVTDFFDQLKSRTKGYASMEYQLIGYRENPLVKLDI 491
gb|AAF30733.1|AE002129_9 (AE002129) GTP-binding membrane protein [Ureaplasma urealyticum]
Length = 599
Score = 168 bits (422), Expect = 1e-40
Identities = 149/511 (29%), Positives = 247/511 (48%), Gaps = 78/511 (15%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D +++ + TL +++E+ + +DS +E+ERGITI ++
Sbjct: 6 IRNFSIIAHIDHGKSTLSDRIIEFTNTL-SKREMTNQILDSMDIERERGITIKLNAVQIK 64
Query: 71 YNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y+ I+++DTPGH DF EV R + +G +LVVDA +G QT + ALE
Sbjct: 65 YHAKDKHEYLIHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLSNVYLALEN 124
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
NL + +NKID PSA P V E+ ++ +G D D P++ SA G +
Sbjct: 125 NLEIVPTINKIDLPSADPNRVKKEIEDV---IGLDTA--DVPLI--SAKTGLN------- 170
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD--YNDYXXXXXXXXXXXXTIKVGD 243
+ ++ + II H+P P+D D+ + Q + D Y+ Y TIKVGD
Sbjct: 171 -----IQDVLEAIIKHVPPPLDAKDDA-KLQALIFDSFYDSYKGVVCLVRVKQGTIKVGD 224
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEI---QEAKAGDL----IALSGMEDIFVGETV 296
+ ++ + K++ V++L G+ +I E AG++ A+ ++DI VG+T+
Sbjct: 225 KI---RMMANNKDYIVSEL----GIRTPKIVNKTELVAGEVGWVAAAIKTVKDINVGDTI 277
Query: 297 T----PSDHVEPLPILHIDEPTLQM-TFLANNSPFAGREGKWVTSRKVEERLVSELQTDV 351
T P+D +PLP P + + + S + + + L E +T
Sbjct: 278 THTNNPAD--KPLPGYKKILPMVYCGLYPIDTSQYDDLKEAMAKISLSDAALTYEYETSQ 335
Query: 352 SLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIK---------EID 401
+L G LH+ ++ E + RE EL ++ P VI K ID
Sbjct: 336 ALGFGIR-------CGFLGLLHMDVIRERIAREFNIELILTAPSVIYKIELTNNQEISID 388
Query: 402 GVA-----------CEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL 450
A EPF ++ I TP+ Y G+I++ R+G D+++ + +LI+
Sbjct: 389 SPAKMPEPTSIKLIKEPFVKLAIITPDNYVGAIMELCQSRRGIYDDLEVIDGTRRKLIYK 448
Query: 451 VP-ARGLIGFTTEFMSMTRGYGIMNHTFDQY 480
+P A + F S+T+GY M++ Y
Sbjct: 449 MPLAEIMYSFFDSLKSITKGYATMDYELIGY 479
sp|Q58448|EF2_METJA ELONGATION FACTOR 2 (EF-2) >gi|2144948|pir||G64430 translation
elongation factor aEF-2 - Methanococcus jannaschii
>gi|1591702 (U67547) translation elongation factor EF-2
[Methanococcus jannaschii]
Length = 726
Score = 168 bits (420), Expect = 2e-40
Identities = 132/472 (27%), Positives = 216/472 (44%), Gaps = 89/472 (18%)
Query: 3 KLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELA--ERAMDSNALEQERGI 60
+L + + IRN+ + AH+DHGKTTL D LL + + KELA + A+D + E +RGI
Sbjct: 13 ELMEKYDRIRNIGICAHIDHGKTTLSDNLLAGAGMIS--KELAGEQLALDFDEEEAQRGI 70
Query: 61 TILAKNTAV----EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
TI A N ++ E N IN++DTPGH DFGG+V R M+ +DG ++VV A EG MPQT
Sbjct: 71 TIFAANVSMVHTYEGNEYLINLIDTPGHVDFGGDVTRAMRAIDGAIVVVCAVEGVMPQTE 130
Query: 117 FVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL------------ 164
VL++AL + + P++ +NK+D+ +E+ FI++ D L
Sbjct: 131 TVLRQALRERVKPVLFINKVDRLINELKLTPEELQSRFIKIINDINNLIRKMAPEEFKDK 190
Query: 165 ------DFPVVYASAING----------------------SSSMSDNPADQEHTMANIFD 196
D V + SA N D A++ + D
Sbjct: 191 WLVRVEDGSVAFGSAYNNWAISVPFMKKSGITFKDIIKYCEEDRQDELAEKAPLHEVVLD 250
Query: 197 TIIDHIPGPVD--------------NSDE-----------PLQFQVSLLDYNDYXXXXXX 231
+I H+P P + NS+ PL ++ + + +
Sbjct: 251 MVIKHLPSPPEAQKYRIPHLWKGDLNSEAGKAMLNCDPNGPLAGVITKIIVDKHAGAVSV 310
Query: 232 XXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIF 291
IK GD V + + + ++ ++ F G +R + AG++ AL G+++
Sbjct: 311 CRLFSGRIKQGDEVYMV---NNQQKAKIQQVSVFMGPERIPVDSISAGNICALVGLKEAS 367
Query: 292 VGETV-TPSDHVEPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQT 349
GET+ +P +EP I HI EP + + A N+ K+ E L +
Sbjct: 368 AGETICSPDKIIEPFEAITHISEPVITVAIEAKNTK---------DLPKLIEVLRQVARE 418
Query: 350 DVSLRVENTESPDKWVVSGRGELHLSIL--IETMRREGYELQVSRPEVIIKE 399
D +++VE E + ++SG GELH+ I+ ++ R G ++V +P V+ +E
Sbjct: 419 DPTVKVEINEETGEHLLSGMGELHIEIITKLKIERDAGIPVEVGQPIVVYRE 470
sp|P29050|EF2_PYRWO ELONGATION FACTOR 2 (EF-2) >gi|99235|pir||S23864 translation
elongation factor aEF-2 - Pyrococcus woesei
>gi|45950|emb|CAA47641| (X67205) translation elongation
factor 2 [Pyrococcus woesei]
Length = 732
Score = 168 bits (420), Expect = 2e-40
Identities = 143/555 (25%), Positives = 245/555 (43%), Gaps = 99/555 (17%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN+ + AH+DHGKTTL D LL + + + +D + EQ RGITI A N +
Sbjct: 19 ERIRNIGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVS 78
Query: 69 VEYN----GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ +N IN++DTPGH DFGG+V R M+ +DGV++VVDA EG MPQT V+++AL
Sbjct: 79 MVHNYEGKDYLINLIDTPGHVDFGGDVTRAMRAIDGVIIVVDAVEGVMPQTETVVRQALR 138
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL------------------DF 166
+ + P++ +NK+D+ +++E F ++ D +L D
Sbjct: 139 EYVKPVLFINKVDRLIRELKLTPQQMMERFSKIIMDVNRLIQRYAPEEYKKKWMVRVEDG 198
Query: 167 PVVYASA--------------------INGSSSMSDNPADQEHTMAN--IFDTIIDHIPG 204
V + SA I + DN ++ + + D ++ H+P
Sbjct: 199 SVAFGSAYYNWALSVPFMQRTGVKFNEIIDLTLKGDNKTLRQRAPLHVVVLDMVVRHLPS 258
Query: 205 PVD-----------------------NSDE--PLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
P++ N D + ++ + + + T+
Sbjct: 259 PIEAQKYRIPHLWQGDINSKIGQAMLNCDPKGKMVMVITKIIIDKHAGEVATGRVWSGTV 318
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
+ G V L S + R+ ++ + G +R ++ AG+++A++G+ D GETV
Sbjct: 319 RSGQEVYLI---NSKRKGRIQQVGIYMGPERINMEAVPAGNIVAVTGLRDAMAGETVA-E 374
Query: 300 DHVEPLPILH-IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENT 358
+ +EP LH + EP + + A N R + E L + D +L V+
Sbjct: 375 EQIEPFEALHYVSEPVVTVAIEAKNVKDLPR---------LIEALRQLAKEDPTLHVKID 425
Query: 359 ESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE--------IDGVACEPFE 409
E + ++SG GELHL + + ++++ G E+ VS P V+ +E ++G +
Sbjct: 426 EETGQHLLSGMGELHLEVKLYKLQKDWGIEVDVSEPIVVYRESITKPSPIVEGKSPNKHN 485
Query: 410 RVQIDTPEEYQGSIIQALSE---RKGDMLDMQITGNGQARL-IFLVPARGLIGF--TTEF 463
R + E I QA+ E +G + D + A L + ARG++ F
Sbjct: 486 RFYV-VVEPMPDEIYQAIKEGIIPEGRVKDPKAVAKKLAELGMDYDIARGVVDIYNGNMF 544
Query: 464 MSMTRGYGIMNHTFD 478
+ T+G +N D
Sbjct: 545 LDNTKGIQYLNEVMD 559
Score = 44.1 bits (102), Expect = 0.003
Identities = 22/67 (32%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP+++V I+ P EY G++ + +S+R+G ++DM+ G +I P + GF
Sbjct: 621 VLYEPYQKVIINIPYEYMGAVSREISQRRGQLIDMRQEGEVMT-IIAEAPVAEMFGFAGA 679
Query: 463 FMSMTRG 469
S T G
Sbjct: 680 IRSATSG 686
sp|P09604|EF2_METVA ELONGATION FACTOR 2 (EF-2) >gi|80964|pir||S01289 translation
elongation factor aEF-2 - Methanococcus vannielii
>gi|44710|emb|CAA30941| (X12384) elongation factor 2 (AA
1 - 727) [Methanococcus vannielii]
Length = 727
Score = 168 bits (420), Expect = 2e-40
Identities = 133/472 (28%), Positives = 217/472 (45%), Gaps = 90/472 (19%)
Query: 4 LTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELA--ERAMDSNALEQERGIT 61
L + + IRN+ + AH+ HGKTTL D LL + + K+LA + A+D + E RGIT
Sbjct: 14 LMETHDQIRNMGICAHIAHGKTTLSDNLLAGAGMIS--KDLAGDQLALDFDEEEAARGIT 71
Query: 62 ILAKNTAV--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRF 117
I A N ++ EYNG IN++DTPGH DFGG+V R M+ +DG V+V A EG MPQT
Sbjct: 72 IYAANVSMVHEYNGKEYLINLIDTPGHVDFGGDVTRAMRAIDGAVVVCCAVEGVMPQTET 131
Query: 118 VLKKALEQNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQLDF 166
VL++AL++ + P++ +NK+D+ R +++ EV +L ++ ++ + ++
Sbjct: 132 VLRQALKEKVKPVLFINKVDRLINELKLTPEELQGRFMKIIAEVNKLIEKMAPEEFKKEW 191
Query: 167 -------PVVYASAING----------------------SSSMSDNPADQEHTMANIFDT 197
V + SA N AD+ I D
Sbjct: 192 LCDVVTGKVAFGSAYNNWAISVPYMQKSGISFKDIIDYCEQEKQSELADKAPLHEVILDM 251
Query: 198 IIDHIPGPVD-------------------------NSDEPLQFQVSLLDYNDYXXXXXXX 232
I H+P P+ + + PL V+ + + +
Sbjct: 252 AIKHLPNPLQAQKYRIPNIWKGDAESEVGKSMAMCDPNGPLAGVVTKIIVDKHAGSISAC 311
Query: 233 XXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFV 292
IK GD + L GS + R ++ F G +R ++ AG++ AL+G+ +
Sbjct: 312 RLFSGRIKQGDELYLV---GSKQKARAQQVAIFMGAERVQVPSISAGNICALTGLREATA 368
Query: 293 GETV-TPSDHVEP--LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQT 349
GETV +PS +EP + H EP + + A N+ K+ E L +
Sbjct: 369 GETVCSPSKILEPGFESLTHTSEPVITVAIEAKNTK---------DLPKLIEILRQIGRE 419
Query: 350 DVSLRVENTESPDKWVVSGRGELHLSILIETM--RREGYELQVSRPEVIIKE 399
D ++R+E E + ++SG GELH+ ++ +T R G E+ V P ++ +E
Sbjct: 420 DNTVRIEINEETGEHLISGMGELHIEVITDTKIGRDGGIEVDVGEPIIVYRE 471
Score = 44.1 bits (102), Expect = 0.003
Identities = 20/67 (29%), Positives = 38/67 (55%), Gaps = 1/67 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
+ EP +++ I+TP++Y G I+ ++ R+G ++DM+ G+ A + VP + GF
Sbjct: 627 ILLEPMQKIYINTPQDYMGDAIREINNRRGQIVDMEQEGD-MAIIKGSVPVAEMFGFAGA 685
Query: 463 FMSMTRG 469
T+G
Sbjct: 686 IRGATQG 692
emb|CAB49200.1| (AJ248283) translation elongation factor EF-2 (fus) [Pyrococcus
abyssi]
Length = 732
Score = 167 bits (418), Expect = 3e-40
Identities = 125/462 (27%), Positives = 213/462 (46%), Gaps = 84/462 (18%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN+ + AH+DHGKTTL D LL + + + +D + EQ RGITI A N +
Sbjct: 19 ERIRNIGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVS 78
Query: 69 VEYN----GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ +N IN++DTPGH DFGG+V R M+ +DGV++VVDA EG MPQT V+++AL
Sbjct: 79 MVHNYEGKDYLINLIDTPGHVDFGGDVTRAMRAIDGVIIVVDAVEGVMPQTETVVRQALR 138
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL------------------DF 166
+ + P++ +NK+D+ +++E F ++ D +L D
Sbjct: 139 EYVKPVLFINKVDRLIRELKLTPQQMMERFSKIIMDVNRLIQRYAPEEYKKQWMVKVEDG 198
Query: 167 PVVYASAING--------------SSSMSDNPADQEHTMAN--------IFDTIIDHIPG 204
V + SA + + D +H + D ++ H+P
Sbjct: 199 SVAFGSAYYNWALSVPFMKRTGVKFNEIIDLTLKGDHKTLRQKAPLHVVVLDMVVKHLPN 258
Query: 205 PVD--------------NSD--------EP---LQFQVSLLDYNDYXXXXXXXXXXXXTI 239
P++ NSD +P + V+ + + + T+
Sbjct: 259 PIEAQKYRIPHLWQGDINSDVGQAMLNCDPKGKMVMVVTKIIIDKHAGEVATGRVWSGTV 318
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
K G V L + + R+ ++ + G +R ++ AG+++A++G+ D GETV
Sbjct: 319 KSGQEVYLI---NTKRKARIQQVGIYMGPERINMEAVPAGNIVAVTGLRDAMAGETVA-E 374
Query: 300 DHVEPLPILH-IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENT 358
+ +EP LH + EP + + A N R + E L + D +L V+
Sbjct: 375 EPIEPFEALHYVSEPVVTVAIEAKNVKDLPR---------LIEALRQLAKEDPTLHVKID 425
Query: 359 ESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E + ++SG GELHL + + ++++ G ++ VS P V+ +E
Sbjct: 426 EETGQHLLSGMGELHLEVKLYKLKKDWGIDIDVSEPIVVYRE 467
Score = 42.6 bits (98), Expect = 0.009
Identities = 21/67 (31%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP+++V I+ P EY G++ + +++R+G ++DM+ G +I P + GF
Sbjct: 621 VLYEPYQKVIINIPYEYMGAVSREITQRRGQLVDMKQEGEVMT-IIAEAPVAEMFGFAGA 679
Query: 463 FMSMTRG 469
S T G
Sbjct: 680 IRSATSG 686
gb|AAD36690.1|AE001805_15 (AE001805) lepA protein [Thermotoga maritima]
Length = 621
Score = 167 bits (418), Expect = 3e-40
Identities = 147/507 (28%), Positives = 235/507 (45%), Gaps = 70/507 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN+ +IAH+DHGKTTLVD +L+ + T+D RK + E+ +D +E+ERGITI A+ V
Sbjct: 23 IRNICIIAHIDHGKTTLVDRILEITNTVDRRK-MREQYLDMMDIERERGITIKAQPVKVM 81
Query: 71 Y-----NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y N INI+DTPGH DF EV R M +G +L+VDA +G QT A+E
Sbjct: 82 YTAEDGNTYEINIIDTPGHVDFSYEVGRSMAACEGAILLVDATQGVEAQTVAHTYLAIEH 141
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+L I V+NKID P+A E E+ +L LG + + ++ SA G+
Sbjct: 142 DLEIIPVINKIDLPNANIEETALEIKDL---LGVSENE----ILLVSAKEGTG------- 187
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ + + I+ +P P + + L+ + Y++Y +K GD +
Sbjct: 188 -----VKELLEAIVKRVPPPKGDINGKLKALIFDAKYDNYKGVIVHVRLFDGQVKPGDKI 242
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETVTPSDH 301
+ S K + G F + + + AG+ + + + D VG+T+T ++
Sbjct: 243 ----MTFSNKKVYEVQEVGVFLPEMEPVDSLSAGEVGYIIAGIKEVSDARVGDTITSAND 298
Query: 302 V--EPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
E LP +P M F F G + RK E+L D +L E T
Sbjct: 299 PVDEALPGYREIKP---MVFA---GMFPGLPEYYEELRKALEKL---KLNDSALYFEPTM 349
Query: 360 SPDK---WVVSGRGELHLSILIETMRRE--------------------GYELQVSRPEVI 396
SP + G LH+ ++ E + RE G E++++ P
Sbjct: 350 SPAMGFGFRCGFLGPLHMEVVRERIEREFDLAVILTAPNVRYRVKLRNGEEIEITDPSKF 409
Query: 397 IKEIDGV-ACEPFERVQIDTPEEYQGSIIQAL-SERKGDMLDMQITGNGQARLIFLVPAR 454
E + + A EP+ + I TP EY G+II + +E++G++ + G + L F P
Sbjct: 410 PDEGEILEAYEPYVDLSIITPSEYIGAIINLVQNEKRGELRITENAGKNRVILRFDAPLA 469
Query: 455 GLI-GFTTEFMSMTRGYGIMNHTFDQY 480
+I F +++RGY M++ F +Y
Sbjct: 470 EIIYDFFDRMKAVSRGYASMDYEFKEY 496
sp|O59521|EF2_PYRHO ELONGATION FACTOR 2 (EF-2) >gi|3258339|dbj|BAA31022.1| (AP000007)
735aa long hypothetical elongation factor 2 [Pyrococcus
horikoshii]
Length = 735
Score = 167 bits (418), Expect = 3e-40
Identities = 124/462 (26%), Positives = 213/462 (45%), Gaps = 84/462 (18%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN+ + AH+DHGKTTL D LL + + + +D + EQ RGITI A N +
Sbjct: 22 ERIRNIGIAAHIDHGKTTLSDNLLAGAGMISEELAGKQLVLDFDEQEQARGITINAANVS 81
Query: 69 VEYN----GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ +N IN++DTPGH DFGG+V R M+ +DGV++VVDA EG MPQT V+++AL
Sbjct: 82 MVHNYEGKDYLINLIDTPGHVDFGGDVTRAMRAIDGVIIVVDAVEGVMPQTETVVRQALR 141
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL------------------DF 166
+ + P++ +NK+D+ +++E F ++ D +L D
Sbjct: 142 EYVKPVLFINKVDRLIRELKLTPQQMMERFSKIIMDVNRLIQRYAPEEYKKKWMVKVEDG 201
Query: 167 PVVYASA--------------------INGSSSMSDNPADQEHTMAN--IFDTIIDHIPG 204
V + SA I + DN ++ + + D ++ H+P
Sbjct: 202 SVAFGSAYYNWALSVPFMKRTGVKFNEIIDLTLKGDNRTLRQKAPLHVVVLDMVVRHLPS 261
Query: 205 PVD-----------------------NSDE--PLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
P++ N D + V+ + + + T+
Sbjct: 262 PIEAQKYRIPHLWEGDISSDIGQAMLNCDPKGKMVMVVTKIIIDKHAGEVATGRVWSGTV 321
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
K G V L + + R+ ++ + G +R ++ AG+++A++G+ D GETV
Sbjct: 322 KSGQEVYLI---NTKRKARIQQVGIYMGPERINMEAVPAGNIVAVTGLRDAMAGETVA-E 377
Query: 300 DHVEPLPILH-IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENT 358
+ +EP LH + EP + + A N R + E L + D +L V+
Sbjct: 378 EQIEPFEALHYVSEPVVTVAIEAKNVKDLPR---------LIEALRQLAKEDPTLHVKID 428
Query: 359 ESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E + ++SG GELHL + + ++++ G +++VS P V+ +E
Sbjct: 429 EETGQHLLSGMGELHLEVKLYKLKKDWGIDIEVSEPIVVYRE 470
Score = 43.0 bits (99), Expect = 0.007
Identities = 21/67 (31%), Positives = 37/67 (54%), Gaps = 1/67 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP+++V I+ P EY G++ + +++R+G ++DM+ G +I P + GF
Sbjct: 624 VLYEPYQKVIINIPYEYMGAVSREITQRRGQLVDMKQEGEVMT-IIAEAPVAEMFGFAGS 682
Query: 463 FMSMTRG 469
S T G
Sbjct: 683 IRSATSG 689
sp|O84067|LEPA_CHLTR GTP-BINDING PROTEIN LEPA >gi|3328458|gb|AAC67655.1| (AE001281)
GTPase [Chlamydia trachomatis]
Length = 602
Score = 166 bits (416), Expect = 5e-40
Identities = 146/503 (29%), Positives = 234/503 (46%), Gaps = 58/503 (11%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E+IRN ++IAH+DHGK+T+ D LL+ + T++ R E+ E+ +DS LE+ERGITI A
Sbjct: 7 ENIRNFSIIAHIDHGKSTIADRLLESTSTIEQR-EMREQLLDSMDLERERGITIKAHPVT 65
Query: 69 V--EYNGT--RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ EY G +N++DTPGH DF EV R + +G +L+VDA +G Q+ + ALE
Sbjct: 66 MTYEYEGETYELNLIDTPGHVDFSYEVSRSLAACEGALLIVDAAQGVQAQSLANVYLALE 125
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
++L I V+NKID P+A+P E + + +E FI L + + SA G
Sbjct: 126 RDLEIIPVLNKIDLPAAQP-EAIKKQIEEFIGLDTSN------TIACSAKTGQG------ 172
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
+ I ++II +P P + L+ + Y+ Y IK GD
Sbjct: 173 ------IPEILESIIRLVPPPKPPQETELKALIFDSHYDPYVGIMVYVRVISGEIKKGDR 226
Query: 245 VTLSKLDGSTKNFRVTKLFGFF---GLDRQEIQEAKAGDLIA-LSGMEDIFVGETVTPSD 300
+T GS +F V + F L ++ + G IA L ++D+ +G+TVT
Sbjct: 227 ITFMATKGS--SFEVLGIGAFLPEATLMEGSLRAGQVGYFIANLKKVKDVKIGDTVTTVK 284
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
H P+ E ++ A P + + T + RL + +++ EN+ S
Sbjct: 285 HPAKEPLEGFKE--IKPVVFAGIYPIDSSD--FDTLKDALGRLQLN-DSALTIEQENSHS 339
Query: 361 PDKWVVSG-RGELHLSILIETMRRE-GYELQVSRPEVIIKE---------IDGVAC---- 405
G G LHL I+ E + RE ++ + P VI K ID
Sbjct: 340 LGFGFRCGFLGLLHLEIIFERISREFDLDIIATAPSVIYKVVLKNGKTLFIDNPTAYPDP 399
Query: 406 -------EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIG 458
EP+ V I TP+EY +I+ +++G L + + L + +P ++
Sbjct: 400 ALIEHMEEPWVHVNIITPQEYLSNIMSLCMDKRGICLKTDMLDQHRLVLSYELPLNEIVS 459
Query: 459 -FTTEFMSMTRGYGIMNHTFDQY 480
F + S+T+GYG ++ Y
Sbjct: 460 DFNDKLKSVTKGYGSFDYRLGDY 482
sp|Q9Z8I4|LEPA_CHLPN GTP-BINDING PROTEIN LEPA >gi|4376635|gb|AAD18503| (AE001620) GTPase
[Chlamydia pneumoniae]
Length = 602
Score = 163 bits (408), Expect = 4e-39
Identities = 142/506 (28%), Positives = 230/506 (45%), Gaps = 64/506 (12%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E+IRN ++IAH+DHGK+T+ D LL+ + T++ R E+ E+ +DS LE+ERGITI A
Sbjct: 7 ENIRNFSIIAHIDHGKSTIADRLLESTSTVEER-EMREQLLDSMDLERERGITIKAHPVT 65
Query: 69 VEY----NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ Y ++N++DTPGH DF EV R + +G +L+VDA +G Q+ + ALE
Sbjct: 66 MTYLYEGEVYQLNLIDTPGHVDFSYEVSRSLSACEGALLIVDAAQGVQAQSLANVYLALE 125
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
++L I V+NKID P+A P + ++ E +I L + ++ SA G
Sbjct: 126 RDLEIIPVLNKIDLPAADPVRIAQQI-EDYIGLDTTN------IIACSAKTGQG------ 172
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
+ I IID +P P ++ L+ V Y+ Y +K GD
Sbjct: 173 ------IPAILKAIIDLVPPPKAPAETELKALVFDSHYDPYVGIMVYVRIISGELKKGDR 226
Query: 245 VTLSKLDGSTKNFRVTKLFGFF---GLDRQEIQEAKAGDLIA-LSGMEDIFVGETVTPSD 300
+T GS +F V + F ++ + G IA L ++D+ +G+TVT +
Sbjct: 227 ITFMAAKGS--SFEVLGIGAFLPKATFIEGSLRPGQVGFFIANLKKVKDVKIGDTVTKTK 284
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
H P+ E N FAG + + + LQ + S ES
Sbjct: 285 HPAKTPLEGFKE--------INPVVFAGIYPIDSSDFDTLKDALGRLQLNDSALTIEQES 336
Query: 361 PDKWVVSGR----GELHLSILIETMRRE-GYELQVSRPEVIIK---------EIDGVAC- 405
R G LHL I+ E + RE ++ + P VI K +ID +
Sbjct: 337 SHSLGFGFRCGFLGLLHLEIIFERIIREFDLDIIATAPSVIYKVVLKNGKVLDIDNPSGY 396
Query: 406 ----------EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARG 455
EP+ V I TP+EY +I+ +++G + ++ + L + +P
Sbjct: 397 PDPAIIEHVEEPWVHVNIITPQEYLSNIMNLCLDKRGICVKTEMLDQHRLVLAYELPLNE 456
Query: 456 LIG-FTTEFMSMTRGYGIMNHTFDQY 480
++ F + S+T+GYG ++ Y
Sbjct: 457 IVSDFNDKLKSVTKGYGSFDYRLGDY 482
sp|O67618|LEPA_AQUAE GTP-BINDING PROTEIN LEPA >gi|2984041 (AE000753) G-protein LepA
[Aquifex aeolicus]
Length = 600
Score = 163 bits (408), Expect = 4e-39
Identities = 145/515 (28%), Positives = 240/515 (46%), Gaps = 73/515 (14%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
++++RN +IAHVDHGK+TL D LL+ + + R E E+ +D+ +E+ERGIT+ +
Sbjct: 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISER-EKREQLLDTLDVERERGITVKMQAV 61
Query: 68 AVEY-----NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ Y N +++++DTPGH DF EV R + +G +L++DA +G QT KA
Sbjct: 62 RMFYKAKDGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
+EQ+L I V+NKID PSA V ++ E+ LG D E+ + ASA G
Sbjct: 122 VEQDLVIIPVINKIDLPSADVDRVKKQIEEV---LGLDPEE----AILASAKEGIG---- 170
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
+ I + I++ IP P + +PL+ + Y+ Y +K G
Sbjct: 171 --------IEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPG 222
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTP 298
D + L + K + VT++ G + + AGD+ ++ + DI +G+T+T
Sbjct: 223 DKIMLM---STGKEYEVTEV-GAQTPKMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITH 278
Query: 299 SDH--VEPLPILHIDEPTLQMTFLANNSPFAG-REGKWVTSRKVEERLVSELQTDVSLRV 355
+ + EP+P +P + +AG + T ++ + L D ++
Sbjct: 279 AKNPTKEPVPGFQPAKPMV----------YAGIYPAEDTTYEELRDALEKYAINDAAIVY 328
Query: 356 ENTESPDKWV---VSGRGELHLSILIETMRRE-GYELQVSRPEVII----KEIDGV---- 403
E SP + V G LH+ I+ E + RE G ++ + P VI K D V
Sbjct: 329 EPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPNVIYRVKKKFTDEVIEVR 388
Query: 404 --------------ACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIF 449
EPF V I TP+EY G IIQ E++G +M L +
Sbjct: 389 NPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYLDPNTVYLEY 448
Query: 450 LVP-ARGLIGFTTEFMSMTRGYGIMNHTFDQYLPA 483
+P + ++ F + S++RG+ ++ F Y P+
Sbjct: 449 EMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPS 483
gb|AAF10717.1|AE001964_1 (AE001964) GTP-binding elongation factor family protein LepA
[Deinococcus radiodurans]
Length = 606
Score = 161 bits (404), Expect = 1e-38
Identities = 149/502 (29%), Positives = 227/502 (44%), Gaps = 72/502 (14%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAHVDHGK+TL D +L+Q + R + ++ +D+ LE+ERGITI + +E
Sbjct: 14 IRNFSIIAHVDHGKSTLADRILEQLGAMGERDK-RDQTLDTLELERERGITIKSTPIRLE 72
Query: 71 YN-----GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y G N++DTPGH DF EV R + +GV+L+VDA +G QT A++
Sbjct: 73 YTRENGEGYVFNLIDTPGHVDFNYEVSRSLAACEGVLLLVDASQGVEAQTIVNAYLAIDN 132
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
NL + V+NKID P+A P E LE I + A+D V AS G
Sbjct: 133 NLEIVPVINKIDLPAADPEGAARE-LEEVIGIPAED------AVRASGKTGIG------- 178
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ I + +++ IP P + PL+ + ++ Y T+K D V
Sbjct: 179 -----IPEILEAVVERIPPPAGDPGAPLKALIFDSFFDAYQGVILFVRVLEGTMKAKDGV 233
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTPSDH 301
+L + KNF V K+ G F QE AG + + ++D VG+T+T SD
Sbjct: 234 ---RLMNAGKNFEVDKV-GTFSPGLVVGQELSAGMVGWVAAGIKDIQDAQVGDTLTGSDR 289
Query: 302 --VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDV--SLRVEN 357
EP P +P + ++ RK+ + L D S E
Sbjct: 290 QTAEPFPGFKPAQPVVFSGLYPTDTE---------DYRKLRDALEKLKLNDAAFSFEPET 340
Query: 358 TESPDKWVVSG-RGELHLSILIETMRRE-GYELQVSRPEVIIK----------------- 398
+E+ G G LH I+ E + RE +L + P V+ +
Sbjct: 341 SEALGFGFRCGFLGLLHAEIIQERLEREYDLDLIATAPAVVYRVTLTNGEIFETQNPAEF 400
Query: 399 ----EIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-A 453
I+ V EP+ ++ + PE+Y G ++Q L ER+G M M G + L++ VP A
Sbjct: 401 PTRDRIEKVE-EPYIKLSVMLPEDYVGPVMQLLQERRGSMQTMNYVGK-RVELVYEVPFA 458
Query: 454 RGLIGFTTEFMSMTRGYGIMNH 475
L F S++RGY M++
Sbjct: 459 EILYDFHDRLKSISRGYASMDY 480
sp|P26752|EF2_THEAC ELONGATION FACTOR 2 (EF-2) >gi|486820|pir||S36089 translation
elongation factor aEF-2 - Thermoplasma acidophilum
>gi|48076|emb|CAA40171| (X56840) elongation factor 2
[Thermoplasma acidophilum]
Length = 732
Score = 160 bits (401), Expect = 3e-38
Identities = 147/570 (25%), Positives = 254/570 (43%), Gaps = 104/570 (18%)
Query: 2 IKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGIT 61
+K+ + E IRN+ ++AH+DHGKTTL D L+ + + + +D + EQ RGIT
Sbjct: 12 LKIVEHTELIRNIGIVAHIDHGKTTLSDNLIAGAGMMSEELAGKQLVLDYDEQEQARGIT 71
Query: 62 ILAKNTAV--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRF 117
I A ++ + G IN++DTPGH DFGG+V R M+ VDGV++VVD+ EG MPQT
Sbjct: 72 INAAVASMVHTFQGKEYLINLIDTPGHVDFGGDVTRAMRAVDGVIVVVDSVEGVMPQTET 131
Query: 118 VLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL------------- 164
V+++AL +++ P++ +NKID+ DE+ + F ++ D +L
Sbjct: 132 VIRQALREHVKPVLFINKIDRLINELRLNSDEMQKRFTKIITDVNRLISKYAPQQFTKEW 191
Query: 165 -----DFPVVYASAINGSSSMSDNPADQEHTMAN----------------------IFDT 197
D V + SA N + A+ + T + I +
Sbjct: 192 QVSVQDGRVAFGSAYNNWAISIPAMAETKITFKDIVEYVKNGKQKELAQKNQLHKIILNM 251
Query: 198 IIDHIPGP-----------------------VDNSD--EPLQFQVSLLDYNDYXXXXXXX 232
+I H+P P + N D P+ V+ + + +
Sbjct: 252 VIRHLPDPKTAQSYRIKQIWKGDLDSEIGKAMINCDYKGPVAMMVTKIIIDPHAGEIAIG 311
Query: 233 XXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFV 292
T+K G + +S G+ K +V L G DR + E AG++ A+ G++
Sbjct: 312 RLFSGTVKKGTDLYIS---GAGKG-KVQTLAMMVGPDRIPVDEITAGNIAAIVGLKGAIA 367
Query: 293 GETVTPSDHVEPL-PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDV 351
G TV+ +++ P P++H EP + + A ++ R + E L + D
Sbjct: 368 GATVSSLENMVPFEPMIHYSEPVVTLAIEAKHTADLPR---------LIEVLRDISKADP 418
Query: 352 SLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACEPFE- 409
S++V+ + + ++SG GELHL + + ++ + E++ S P V+ +E PFE
Sbjct: 419 SIQVDINQETGEHLISGMGELHLDVTLYRIKNDYKVEVETSDPIVVYRETVEKKGGPFEG 478
Query: 410 -------RVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLV-------PARG 455
R + E + +IQA+ + GD+ + +A + LV A+G
Sbjct: 479 KSPNKHNRFYFEV-EPLKPEVIQAIED--GDIPQGSKFKDKKALVELLVSKGIDRDEAKG 535
Query: 456 LIGF--TTEFMSMTRGYGIMNHTFDQYLPA 483
L+ T +TRG ++ T + + A
Sbjct: 536 LVCVEGTNMMFDVTRGIQYLDETMELLIEA 565
Score = 43.0 bits (99), Expect = 0.007
Identities = 24/71 (33%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
Query: 399 EIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIG 458
E V EP +RV I+ P+E G+ I + +R+G + DM+ G+ + L VP G+ G
Sbjct: 618 EAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRGIIEDMKQEGD-EISLTAKVPVAGMFG 676
Query: 459 FTTEFMSMTRG 469
F + T G
Sbjct: 677 FASAIRGATGG 687
sp|P37949|LEPA_BACSU GTP-BINDING PROTEIN LEPA >gi|1122398|emb|CAA62842.1| (X91655) lepA
[Bacillus subtilis] >gi|1303804|dbj|BAA12460| (D84432)
YqeQ [Bacillus subtilis] >gi|2634997|emb|CAB14493|
(Z99117) GTP-binding protein [Bacillus subtilis]
Length = 612
Score = 159 bits (399), Expect = 5e-38
Identities = 150/548 (27%), Positives = 250/548 (45%), Gaps = 74/548 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D +L+++ + R E+ E+ +DS LE+ERGITI + ++
Sbjct: 14 IRNFSIIAHIDHGKSTLADRILEKTSAITQR-EMKEQLLDSMDLERERGITIKLNSVQLK 72
Query: 71 YNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y +++DTPGH DF EV R + +G +LVVDA +G QT + AL+
Sbjct: 73 YKAKDGEEYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDN 132
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+L + V+NKID PSA P V EV ++ +G D + V ASA G
Sbjct: 133 DLEILPVINKIDLPSAEPERVRQEVEDV---IGLDASE----AVLASAKAGIG------- 178
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ I + I++ +P P + + PL+ + Y+ Y T+K G +
Sbjct: 179 -----IEEILEQIVEKVPAPTGDPEAPLKALIFDSLYDAYRGVVAYIRVVEGTVKPGQKI 233
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTPSDH 301
K+ + K F VT++ G F E GD+ ++ + D VG+T+T + +
Sbjct: 234 ---KMMATGKEFEVTEV-GVFTPKATPTNELTVGDVGFLTASIKNVGDTRVGDTITSAAN 289
Query: 302 --VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
E LP P + ++ K+ R+ E+L EL D SL+ E
Sbjct: 290 PAEEALPGYRKLNPMVYCGLYPIDT------AKYNDLREALEKL--EL-NDSSLQYEAET 340
Query: 360 SPD---KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVII------------------ 397
S + G LH+ I+ E + RE +L + P VI
Sbjct: 341 SQALGFGFRCGFLGMLHMEIIQERIEREFNIDLITTAPSVIYDVYMTDGEKVVVDNPSNM 400
Query: 398 ---KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPAR 454
++I+ V EP+ + + P +Y G++++ ++G+ +DMQ + +I+ +P
Sbjct: 401 PDPQKIERVE-EPYVKATMMVPNDYVGAVMELCQGKRGNFIDMQYLDANRVSIIYDMPLA 459
Query: 455 GLI-GFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIGGRHRGSLISMDSGQVTSYAMGYVQ 513
++ F + S T+GY ++ Y P+ ++ G I S V Y
Sbjct: 460 EIVYEFFDQLKSSTKGYASFDYELIGYKPSKLVKMDIMLNGEKIDALSFIV---HRDYAY 516
Query: 514 ERGQLFVD 521
ERG++ V+
Sbjct: 517 ERGKVIVE 524
sp|P75498|LEPA_MYCPN GTP-BINDING PROTEIN LEPA >gi|2146143|pir||S73882 GTP-binding
membrane protein lepA - Mycoplasma pneumoniae (SGC3)
(ATCC 29342) >gi|1674255 (AE000055) Mycoplasma
pneumoniae, GTP-binding membrane protein LepA; similar
to GenBank Accession Number I64042, from H. influenzae
[Mycoplasma pneumoniae]
Length = 581
Score = 153 bits (382), Expect = 5e-36
Identities = 141/514 (27%), Positives = 243/514 (46%), Gaps = 80/514 (15%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
++ IRN ++IAH+DHGK+TL D L+++S + R L + +D+ A+E+ERGITI K
Sbjct: 3 QQKIRNFSIIAHIDHGKSTLSDRLIERSIGFEKRL-LQAQMLDTMAIERERGITI--KLN 59
Query: 68 AVEYNGTRIN------ILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
AV+ + N ++DTPGH DF EV R + +GV+L+VDA +G QT
Sbjct: 60 AVQLKMAQGNQQYLFHLVDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNTYL 119
Query: 122 ALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIE-LGADDEQLDFPVVYASAINGSSSM 180
ALE NL I V+NK+D SA V++ + F + LG D + P+V A G
Sbjct: 120 ALENNLEIIPVINKVDMESAD----VEKTKQAFHQLLGVDPNTI--PLVSAKTGLG---- 169
Query: 181 SDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIK 240
+ + TII+ +P P + +PL+ + Y+ Y ++K
Sbjct: 170 ----------IDQLITTIIEKVPPPKGDESKPLKALLFDSYYDPYKGVVCFIRIFEGSLK 219
Query: 241 VGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETV 296
+ D + ++ + + + FF ++Q++ KAG++ + + D+ VG+T+
Sbjct: 220 LNDKIRFARSNSVYQIVELGIKNPFF--EKQDV--LKAGEIGWFSAGIKKLRDVTVGDTI 275
Query: 297 TPSDH--VEPLPILHIDEPTLQM-TFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSL 353
++ PLP P + + +N+ + +E+ ++S++ +
Sbjct: 276 VHAEDTTTPPLPGYKKVLPMIYCGLYPIDNNDYQN------LKMAMEKIILSDVA--LEY 327
Query: 354 RVENTESPDKWVVSG-RGELHLSILIETMRRE--------------------GYELQVSR 392
E +++ V G G LH+ ++ E + RE G EL++
Sbjct: 328 EYETSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISAPPSVRYKVLLTNGEELELDN 387
Query: 393 PEVI-----IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARL 447
P ++ IK I EPF RV ID P+ Y G++I +G ++ + RL
Sbjct: 388 PSLLPERSRIKSIS----EPFVRVYIDLPDHYLGTVIDLCQNFRGQYEKLEEIDIDRKRL 443
Query: 448 IFLVPARGLI-GFTTEFMSMTRGYGIMNHTFDQY 480
++L+P +I F + S+T+GY +N+ FDQY
Sbjct: 444 VYLMPLGEIIYSFFDKLKSITKGYASLNYEFDQY 477
gb|AAD56962.1|AF188620_1 (AF188620) GTP-binding protein LepA [Bordetella pertussis]
Length = 597
Score = 150 bits (374), Expect = 4e-35
Identities = 138/511 (27%), Positives = 232/511 (45%), Gaps = 70/511 (13%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
+ IRN ++IAH+DHGK+TL D L+ + L A +E++ + +DS +E+ERGITI A+ +
Sbjct: 2 QHIRNFSIIAHIDHGKSTLADRLIHRCGGL-AEREMSAQVLDSMDIERERGITIKAQTAS 60
Query: 69 VEY---NGT--RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
++Y +GT +N++DTPGH DF EV R + +G +LVVDA +G QT A+
Sbjct: 61 LQYKSQDGTVYNLNLIDTPGHVDFSYEVSRSLSACEGALLVVDASQGVDAQTVANCYTAI 120
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E + + V+NK+D P A P EV ++ +G D + V ASA G
Sbjct: 121 ELGMEVLPVLNKMDLPQADPEAARQEVEDV---IGIDASE----AVLASAKTGMG----- 168
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ I ++I+ +P P + PLQ + +++Y +K D
Sbjct: 169 -------IDEILESIVARVPPPKGDPSAPLQALIIDSWFDNYVGVVMLVRIVNGVLKPKD 221
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETVTPS 299
+ L ++ + + G F Q E AG+ + + +E VG+T+T +
Sbjct: 222 KILLM----ASHATHLCEQIGVFTPKSQPRPELSAGEVGFVIAGIKELEHAKVGDTITLA 277
Query: 300 DH--VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVEN 357
EPLP +P + A P E ++ + L D +L E
Sbjct: 278 GKPAAEPLPGFKEVKPQV----FAGLYPVESSE-----YDQLRDSLEKLKLNDAALMFEP 328
Query: 358 TESPD---KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVI--IKEIDGVAC------ 405
S + G LH+ I+ E + RE ++ + P V+ +++ DG
Sbjct: 329 EVSQALGFGFRCGFLGLLHMEIVQERLEREFDMDIITTAPSVVYEVEQRDGTVVTIESPS 388
Query: 406 ------------EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP- 452
EP +V + P+EY G ++ + ++G L+M G Q L + +P
Sbjct: 389 RMPEIAKIADIREPIVKVTLFMPQEYVGPVMTLCNNKRGVQLNMSYHGR-QVHLTYEIPL 447
Query: 453 ARGLIGFTTEFMSMTRGYGIMNHTFDQYLPA 483
A ++ F + S++RGY M++ F +Y A
Sbjct: 448 AEIVLDFFDKLKSVSRGYASMDYEFVEYRSA 478
sp|P07682|LEPA_ECOLI GTP-BINDING PROTEIN LEPA >gi|1788922 (AE000343) GTP-binding
elongation factor, may be inner membrane protein
[Escherichia coli]
Length = 599
Score = 146 bits (365), Expect = 5e-34
Identities = 138/506 (27%), Positives = 231/506 (45%), Gaps = 66/506 (13%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D +++ L R E+ + +DS LE+ERGITI A++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVT 60
Query: 69 VEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
++Y + ++N +DTPGH DF EV R + +G +LVVDA +G QT A+
Sbjct: 61 LDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E +L + V+NKID P+A P V +E+ E + + A D V SA G
Sbjct: 121 EMDLEVVPVLNKIDLPAADPERVAEEI-EDIVGIDATD------AVRCSAKTGVG----- 168
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ ++ + ++ IP P + + PLQ + +++Y T++ GD
Sbjct: 169 -------VQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGD 221
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLI-ALSGMEDIFVGETVTPSDH- 301
V + G T N +F +DR E++ + G L+ A+ + VG+T+T + +
Sbjct: 222 KVKVMS-TGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNP 280
Query: 302 -VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
+ LP +P + +S + L D SL E ES
Sbjct: 281 AEKALPGFKKVKPQVYAGLFPVSSD---------DYEAFRDALGKLSLNDASLFYE-PES 330
Query: 361 PDKWVVSGR----GELHLSILIETMRRE------------GYELQVSRPEVI-------I 397
R G LH+ I+ E + RE YE++ + EVI +
Sbjct: 331 SSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKL 390
Query: 398 KEIDGV--ACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-AR 454
++ + EP + P+ Y G++I E++G +M GN Q L + +P A
Sbjct: 391 PAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN-QVALTYEIPMAE 449
Query: 455 GLIGFTTEFMSMTRGYGIMNHTFDQY 480
++ F S +RGY +++ F ++
Sbjct: 450 VVLDFFDRLKSTSRGYASLDYNFKRF 475
sp|Q9ZM93|LEPA_HELPJ GTP-BINDING PROTEIN LEPA >gi|4154850 (AE001468) GTP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 604
Score = 146 bits (364), Expect = 6e-34
Identities = 130/505 (25%), Positives = 228/505 (44%), Gaps = 73/505 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D L+ + + R E+ + MD+ +E+ERGITI A++
Sbjct: 10 KNIRNFSIIAHIDHGKSTLADCLIAECNAISNR-EMKSQVMDTMDIEKERGITIKAQSVR 68
Query: 69 VEYNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ Y +N++DTPGH DF EV R + +G +LVVDA +G QT AL+
Sbjct: 69 LNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALD 128
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
NL + V+NKID P+A EV ++ ++ + A+ ++ + +
Sbjct: 129 NNLEILPVINKIDLPNANVLEVKQDI----------EDTIGIDWFNANEVSAKAKLG--- 175
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
+ ++ + II IP P + + PL+ + +++Y +I
Sbjct: 176 ------IKDLLEKIITTIPAPSGDPNNPLKALIYDSWFDNYLGALALVRIMDGSINTEQE 229
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTPSD 300
+ + G+ K V L+ L + + + G++ + L + DI VG+T+T ++
Sbjct: 230 ILVM---GTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAE 286
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREG-KWVTSRKVEERLVSELQTDVSLRVENTE 359
+ PI + A FAG + + E L+ D +L E
Sbjct: 287 NPTSKPI--------EGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFE--- 335
Query: 360 SPDKWVVSG-------RGELHLSILIETMRRE-GYELQVSRPEVI---------IKEIDG 402
P+ V G G LH+ ++ E + RE L + P V+ IK +
Sbjct: 336 -PESSVALGFGFRVGFLGLLHMEVIKERLEREFSLNLIATAPTVVYEVHLTDNSIKYVQN 394
Query: 403 ---------VAC--EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLV 451
+AC EPF R I TP E+ G+++Q L+ ++G M+ + L + +
Sbjct: 395 PSELPPENHIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSL 454
Query: 452 PARGLI-GFTTEFMSMTRGYGIMNH 475
P+ ++ F + S T+GY ++
Sbjct: 455 PSNEIVMDFYDKLKSCTKGYASFDY 479
sp|O25122|LEPA_HELPY GTP-BINDING PROTEIN LEPA >gi|2313456|gb|AAD07423.1| (AE000552)
GTP-binding membrane protein (lepA) [Helicobacter pylori
26695]
Length = 602
Score = 145 bits (363), Expect = 8e-34
Identities = 133/505 (26%), Positives = 228/505 (44%), Gaps = 73/505 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D L+ + + R E+ + MD+ +E+ERGITI A++
Sbjct: 8 KNIRNFSIIAHIDHGKSTLADCLISECNAISNR-EMKSQVMDTMDIEKERGITIKAQSVR 66
Query: 69 VEYNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ Y +N++DTPGH DF EV R + +G +LVVDA +G QT AL+
Sbjct: 67 LNYTFKGEDYVLNLIDTPGHVDFSYEVSRSLCSCEGALLVVDATQGVEAQTIANTYIALD 126
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
+L + V+NKID P+A EV ++ + +G D S+ ++
Sbjct: 127 NHLEILPVINKIDLPNANVLEVKQDIED---TIGID----------------CSNTNEVS 167
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
A + ++ + II IP P + + PL+ + +++Y +I
Sbjct: 168 AKARLGIKDLLEKIITTIPAPSGDFNAPLKALIYDSWFDNYLGALALVRIMDGSINTEQE 227
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTPSD 300
+ + G+ K V L+ L + + + G++ + L + DI VG+T+T +
Sbjct: 228 ILVM---GTGKKHGVLGLYYPNPLKKIPTKSLECGEIGIVSLGLKSVTDIAVGDTLTDAK 284
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREG-KWVTSRKVEERLVSELQTDVSLRVENTE 359
+ PI + A FAG + + E L+ D +L E
Sbjct: 285 NPTSKPI--------EGFMPAKPFVFAGLYPIETDRFEDLREALLKLQLNDCALNFE--- 333
Query: 360 SPDKWVVSG-------RGELHLSILIETMRRE-GYELQVSRPEVI---------IKEIDG 402
P+ V G G LH+ ++ E + RE G L + P V+ IK +
Sbjct: 334 -PESSVALGFGFRVGFLGLLHMEVIKERLEREFGLNLIATAPTVVYEVHLTDNSIKYVQN 392
Query: 403 ---------VAC--EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLV 451
+AC EPF R I TP E+ G+++Q L+ ++G M+ + L + +
Sbjct: 393 PSELPPENCIACIKEPFVRATIITPSEFLGNLMQLLNNKRGIQEKMEYLNQSRVMLTYSL 452
Query: 452 PARGLI-GFTTEFMSMTRGYGIMNH 475
P+ ++ F + S T+GY ++
Sbjct: 453 PSNEIVMDFYDKLKSCTKGYASFDY 477
sp|P43729|LEPA_HAEIN GTP-BINDING PROTEIN LEPA >gi|1074172|pir||I64042 GTP-binding
membrane protein (lepA) homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1572960 (U32687) GTP-binding
membrane protein (lepA) [Haemophilus influenzae Rd]
Length = 598
Score = 145 bits (362), Expect = 1e-33
Identities = 135/512 (26%), Positives = 237/512 (45%), Gaps = 72/512 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D L++ L R E+ + +DS LE+ERGITI A++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRLIQTCGGLSDR-EMEAQVLDSMDLERERGITIKAQSVT 60
Query: 69 VEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ Y ++N +DTPGH DF EV R + +G +LVVDA +G QT A+
Sbjct: 61 LNYKAKDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAI 120
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E +L + ++NKID P+A P V +E+ ++ +G D + V SA G
Sbjct: 121 EMDLEVVPILNKIDLPAADPERVAEEIEDI---VGIDAME----AVRCSAKTGVG----- 168
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ ++ + I+ IP P + + PLQ + +++Y ++ GD
Sbjct: 169 -------IEDVLEEIVAKIPAPEGDPNAPLQALIIDSWFDNYLGVVSLVRIKNGVLRKGD 221
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL-IALSGMEDIF---VGETVTPS 299
+ K+ + + + V +L G F +++ + G++ + ++DI VG+T+T
Sbjct: 222 KI---KVMSTGQTYNVDRL-GIFTPKQEDTTVLECGEVGWVVCAIKDILGAPVGDTLTHQ 277
Query: 300 DH--VEPLPILHIDEPTLQMTFLANNS----PFAGREGKWVTSRKVEERLVSELQTDVSL 353
+ E LP +P + +S F GK + + L E +T +L
Sbjct: 278 HNSATEVLPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLN---DASLFYEPETSTAL 334
Query: 354 RVENTESPDKWVVSGRGELHLSILIETMRREG------------YELQVSRPEVI----- 396
+ G LH+ I+ E + RE YE++++ EV+
Sbjct: 335 GF-------GFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVIYEVEMTNGEVVYVDSP 387
Query: 397 --IKEIDGVA--CEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP 452
+ ++ +A EP + P+EY G++I E++G +M GN Q L + +P
Sbjct: 388 AKLPPLNNIAEIREPIAECNMLVPQEYLGNVITLCVEKRGVQTNMVYHGN-QIALTYEIP 446
Query: 453 -ARGLIGFTTEFMSMTRGYGIMNHTFDQYLPA 483
++ F S +RGY +++ F ++ A
Sbjct: 447 MGEVVLDFFDRLKSTSRGYASLDYGFKRFQAA 478
ref|NP_013392.1|GUF1| GTPase; Guf1p >gi|2506379|sp|P46943|GUF1_YEAST GTP-BINDING PROTEIN
GUF1 (GTPASE GUF1) >gi|1077352|pir||S50374 GTP-binding
protein GUF1 - yeast (Saccharomyces cerevisiae)
>gi|596037 (U17243) Similar to GTP binding proteins
[Saccharomyces cerevisiae]
Length = 645
Score = 145 bits (361), Expect = 1e-33
Identities = 137/506 (27%), Positives = 223/506 (43%), Gaps = 67/506 (13%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E+ RN +++AHVDHGK+TL D LL+ + +D ++ +D +E+ERGITI A+ +
Sbjct: 44 ENYRNFSIVAHVDHGKSTLSDRLLEITHVIDPNAR-NKQVLDKLEVERERGITIKAQTCS 102
Query: 69 VEYNGTR------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ Y R ++++DTPGH DF GEV R G +L+VDA +G QT A
Sbjct: 103 MFYKDKRTGKNYLLHLIDTPGHVDFRGEVSRSYASCGGAILLVDASQGIQAQTVANFYLA 162
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
L I V+NKID +V D+++ F EL +D ++ SA G
Sbjct: 163 FSLGLKLIPVINKIDLNFTDVKQVKDQIVNNF-ELPEED------IIGVSAKTGL----- 210
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD--YNDYXXXXXXXXXXXXTIK 240
+ + IID IP P D+P F+ L+D Y+ Y +++
Sbjct: 211 ------NVEELLLPAIIDRIPPPTGRPDKP--FRALLVDSWYDAYLGAVLLVNIVDGSVR 262
Query: 241 VGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETV 296
D V ++ TK K G DR K G ++ + ++ +G+T+
Sbjct: 263 KNDKVICAQ----TKEKYEVKDIGIMYPDRTSTGTLKTGQVGYLVLGMKDSKEAKIGDTI 318
Query: 297 TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
V +L E M F+ P G E K + RLV ++ R
Sbjct: 319 MHLSKVNETEVLPGFEEQKPMVFV-GAFPADGIEFKAMDDDM--SRLVLNDRSVTLERET 375
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEV--IIKEIDG----------- 402
+ W + G LH S+ E + +E G +L +++P V +++ DG
Sbjct: 376 SNALGQGWRLGFLGSLHASVFRERLEKEYGSKLIITQPTVPYLVEFTDGKKKLITNPDEF 435
Query: 403 ---------VAC--EPFERVQIDTPEEYQGSIIQALSERKGDMLDM-QITGNGQARLIFL 450
VA EPF + P+EY GS+I+ +G+ +D+ + NGQ L +
Sbjct: 436 PDGATKRVNVAAFHEPFIEAVMTLPQEYLGSVIRLCDSNRGEQIDITYLNTNGQVMLKYY 495
Query: 451 VPARGLI-GFTTEFMSMTRGYGIMNH 475
+P L+ F + S++RG+ +++
Sbjct: 496 LPLSHLVDDFFGKLKSVSRGFASLDY 521
gi|722349 (U22360) Guf1p [Saccharomyces cerevisiae]
Length = 586
Score = 143 bits (358), Expect = 3e-33
Identities = 137/509 (26%), Positives = 225/509 (43%), Gaps = 73/509 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E+ RN +++AHVDHGK+TL D LL+ + +D ++ +D +E+ERGITI A+ +
Sbjct: 44 ENYRNFSIVAHVDHGKSTLSDRLLEITHVIDPNAR-NKQVLDKLEVERERGITIKAQTCS 102
Query: 69 VEYNGTR------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ Y R ++++DTPGH DF GEV R G +L+VDA +G QT A
Sbjct: 103 MFYKDKRTGKNYLLHLIDTPGHVDFRGEVSRSYASCGGAILLVDASQGIQAQTVANFYLA 162
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
L I V+NKID +V D+++ F EL +D ++ SA G
Sbjct: 163 FSLGLKLIPVINKIDLNFTDVKQVKDQIVNNF-ELPEED------IIGVSAKTGL----- 210
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD--YNDYXXXXXXXXXXXXTIK 240
+ + IID IP P D+P F+ L+D Y+ Y ++
Sbjct: 211 ------NVEELLLPAIIDRIPPPTGRPDKP--FRALLVDSWYDAYLGAVLLVNIVDGFVR 262
Query: 241 VGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETV 296
D V ++ TK K G DR K G ++ + ++ +G+T+
Sbjct: 263 KNDKVICAQ----TKEKYEVKDIGIMYPDRTSTGTLKTGQVGYLVLGMKDSKEAKIGDTI 318
Query: 297 TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
V +L E M F+ P G E K +++ + + D S+ +E
Sbjct: 319 MHLSKVNETEVLPGFEEQKPMVFV-GAFPADGIEFK-----PMDDDMSRLVLNDRSVTLE 372
Query: 357 NTES---PDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEV--IIKEIDG-------- 402
S W + G LH S+ E + +E G +L +++P V +++ DG
Sbjct: 373 RQTSNALGQGWRLGFLGSLHASVFRERLEKEYGSKLIITQPTVPYLVEFTDGKKKLITNP 432
Query: 403 ------------VAC--EPFERVQIDTPEEYQGSIIQALSERKGDMLDM-QITGNGQARL 447
VA EPF + P+EY GS+I+ +G+ +D+ + NGQ L
Sbjct: 433 DEFPDGATKRVNVAAFHEPFIEAVMTLPQEYLGSVIRLCDSNRGEQIDITYLNTNGQVML 492
Query: 448 IFLVPARGLI-GFTTEFMSMTRGYGIMNH 475
+ +P L+ F + S++RG+ +++
Sbjct: 493 KYYLPLSHLVDDFFGKLKSVSRGFASLDY 521
sp|Q9YC19|EF2_AERPE ELONGATION FACTOR 2 (EF-2) >gi|5105115|dbj|BAA80429.1| (AP000061)
736aa long hypothetical elongation factor ef-2
[Aeropyrum pernix]
Length = 736
Score = 142 bits (355), Expect = 7e-33
Identities = 126/473 (26%), Positives = 210/473 (43%), Gaps = 89/473 (18%)
Query: 3 KLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITI 62
K+ + + IRN+ +IAHVDHGKTT D LL + + R +D +E++RGIT+
Sbjct: 13 KIMRNIDQIRNIGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLNVEKQRGITV 72
Query: 63 LAKNTAV--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFV 118
+ N ++ EY G IN++DTPGH DF G+V R ++++DG ++VVDA EG M QT V
Sbjct: 73 KSANVSLYHEYEGKPYVINLIDTPGHVDFSGKVTRSLRVLDGAIVVVDAVEGVMTQTETV 132
Query: 119 LKKALEQNLTPIVVVNKID-----------KPSARPAEVVDEV---LELFIE-------- 156
+++ALE+ + PI+ +NK+D K R E++ EV ++L+ E
Sbjct: 133 IRQALEERVRPILFINKVDRLIKELKLPPEKIQQRFVEIIKEVNNLIDLYAEPEFRKKWK 192
Query: 157 -----------LGADDEQLDFP------VVYASAINGSSSMSDNPADQEHTMA---NIFD 196
D + P + + I + A+ M + D
Sbjct: 193 LDPNAGMVAFGSAKDKWGISVPQVKKKGITFREIIQAYEKGKEAVAELSKKMPLHETLLD 252
Query: 197 TIIDHIPGPVD-------------------------NSDEPLQFQVSLLDYNDYXXXXXX 231
+I +P P + + D PL F ++ + +
Sbjct: 253 MVIKFVPNPREAQRYRIPKIWKGDINSEIGQAMLNADPDGPLVFFINDVRI-EKAGLVAT 311
Query: 232 XXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIF 291
T++ G+ V L ++ +V+ G F R+ +E AG++ A+ G ED+
Sbjct: 312 GRVFSGTLRSGEEVYLLNAGKKSRLLQVSIYMGPF---REVTKEIPAGNIGAVMGFEDVR 368
Query: 292 VGETVTP---SDHVEPLPIL-HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSEL 347
GETV ++ P L ++ EP + + A K K+ E L
Sbjct: 369 AGETVVSLGYEENAAPFESLRYVSEPVVTI---------AVEPVKIQDLPKMIEALRKLT 419
Query: 348 QTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
D +L V+ E ++++SG G LHL I + +R + G E++ S P V+ +E
Sbjct: 420 IEDPNLVVKINEETGEYLLSGMGPLHLEIALTMLREKFGVEVKASPPIVVYRE 472
emb|CAB73286.1| (AL139077) lepA GTP-binding protein homolog [Campylobacter jejuni]
Length = 598
Score = 141 bits (352), Expect = 2e-32
Identities = 135/505 (26%), Positives = 226/505 (44%), Gaps = 73/505 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D ++ + + R +++ + MD+ +E+ERGITI A++
Sbjct: 4 KNIRNFSIIAHIDHGKSTLADRIISECGAISDR-QMSSQVMDTMDIEKERGITIKAQSVR 62
Query: 69 VEYNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ Y +N++DTPGH DF EV R + +G +LVVDA +G QT + ALE
Sbjct: 63 LNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLVVDASQGVEAQTIANVYIALE 122
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
NL I V+NKID P+A E V +E I + D + SA G
Sbjct: 123 NNLEIIPVINKIDLPNA-DVEKVKHEIEHIIGIDCKD------AICVSAKTGVG------ 169
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
+ + +TII IP P + + P + + +++Y +I D
Sbjct: 170 ------IKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDE 223
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETVTPSD 300
V + D K V LF L + Q ++G+ ++ L + D+ VG+T+T
Sbjct: 224 VLVMSTD---KKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVK 280
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAG----REGKWVTSRKVEERLVSELQTDVSLRVE 356
+ I ++ A FAG K+ R ++L D S+ E
Sbjct: 281 NKAKEAIGGFEK--------AKAFVFAGLYPIETDKFEDLRDALDKL---KLNDSSITYE 329
Query: 357 NTES---PDKWVVSGRGELHLSILIETMRRE------------GYELQVSRPEVI----- 396
S + V G LH+ ++ E + RE YE+ + E+I
Sbjct: 330 PETSLALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNP 389
Query: 397 -----IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLV 451
+ +ID + EP+ + I TP E+ G++I L+ ++G + M + L + V
Sbjct: 390 SELPPVNKIDHIK-EPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDV 448
Query: 452 PARGLI-GFTTEFMSMTRGYGIMNH 475
P ++ F + S+T+GY ++
Sbjct: 449 PLNEIVMDFYDKLKSLTKGYASFDY 473
sp|P47384|LEPA_MYCGE GTP-BINDING PROTEIN LEPA >gi|1361524|pir||C64215 GTP-binding
membrane protein lepA - Mycoplasma genitalium (SGC3)
>gi|3844728 (U39693) GTP-binding membrane protein (lepA)
[Mycoplasma genitalium]
Length = 598
Score = 141 bits (351), Expect = 2e-32
Identities = 142/511 (27%), Positives = 225/511 (43%), Gaps = 74/511 (14%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+++IRN ++IAH+DHGK+TL D LL+ S + R L + +D+ +E+ERGITI K
Sbjct: 3 QKNIRNFSIIAHIDHGKSTLSDRLLEHSLGFEKRL-LQAQMLDTMEIERERGITI--KLN 59
Query: 68 AVEY------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
AVE N +++DTPGH DF EV R + +GV+L+VDA +G QT
Sbjct: 60 AVELKINVDNNNYLFHLIDTPGHVDFTYEVSRSLAACEGVLLLVDATQGIQAQTISNAYL 119
Query: 122 ALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMS 181
ALE NL I V+NKID +A D + L LG E+ +V A A G
Sbjct: 120 ALENNLEIIPVINKIDMDNADIETTKDSLHNL---LGV--EKNSICLVSAKANLG----- 169
Query: 182 DNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKV 241
+ + TII IP P + PL+ + Y+ Y +KV
Sbjct: 170 ---------IDQLIQTIIAKIPPPKGEINRPLKALLFDSYYDPYKGVVCFIRVFDGCLKV 220
Query: 242 GDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA-LSGMEDIFVGETVTPSD 300
D V K + + + FF R ++Q G A + + D+ VG+T+ D
Sbjct: 221 NDKVRFIKSNSVYQIVELGVKTPFFE-KRDQLQAGDVGWFSAGIKKLRDVGVGDTIVSFD 279
Query: 301 HVEPLPILHIDEPTLQMTFL----ANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
P+ + L M + +NS + +E+ ++S+ + E
Sbjct: 280 DQFTKPLAGY-KKILPMIYCGLYPVDNSDYQN------LKLAMEKIIISD--AALEYEYE 330
Query: 357 NTESPDKWVVSG-RGELHLSILIETMRRE--------------------GYELQVSRPEV 395
+++ V G G LH+ ++ E + RE G E+ + P +
Sbjct: 331 TSQALGFGVRCGFLGLLHMDVIKERLEREYNLKLISAPPSVVYKVLLTNGKEISIDNPSL 390
Query: 396 I-----IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL 450
+ IK I EPF +V ID P++Y GS+I +G + + R+ +L
Sbjct: 391 LPERSKIKAIS----EPFVKVFIDLPDQYLGSVIDLCQNFRGQYESLNEIDINRKRICYL 446
Query: 451 VPARGLI-GFTTEFMSMTRGYGIMNHTFDQY 480
+P +I F + S+++GY +N+ F Y
Sbjct: 447 MPLGEIIYSFFDKLKSISKGYASLNYEFYNY 477
prf||2004270A elongation factor 2 [Sulfolobus solfataricus]
Length = 736
Score = 141 bits (351), Expect = 2e-32
Identities = 125/486 (25%), Positives = 213/486 (43%), Gaps = 89/486 (18%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++ L K R +RN+ +IAHVDHGKTT D LL S + + A+D +EQ+RGI
Sbjct: 10 VLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLNVEQQRGI 69
Query: 61 TILAKNTAV----EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
T+ A N ++ E G IN++DTPGH DF G V R ++++DG ++VVDA EG M QT
Sbjct: 70 TVKAANISLYHEAEGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTE 129
Query: 117 FVLKKALEQNLTPIVVVNKIDK----PSARPAEVVDEVLELFIEL--------------- 157
VL+++LE+ + PI+ +NK+D+ P E+++ +L++ ++
Sbjct: 130 TVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEK 189
Query: 158 --------------GADDEQLDFPVVYASAIN----------GSSSMSDNPADQEHTMAN 193
D P+ IN S + A Q
Sbjct: 190 WMINPQAGNVIFGSAKDKWGFSLPMAQKKGINMKNVIDAYTASDKSKLEELAAQAPINEA 249
Query: 194 IFDTIIDHIPGPVD-----------------------NSDE--PLQFQVSLLDYNDYXXX 228
+ D I +P P++ N+D P+ F ++ + + +
Sbjct: 250 LLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAGL 309
Query: 229 XXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGME 288
T++ G+ + L S R+ ++ + G R+ +E AG++ A+ G++
Sbjct: 310 VATGRVFSGTLRSGEELWLVNAKTSQ---RILQVSLYMGPTRELAEEIPAGNIAAVLGLD 366
Query: 289 DIFVGET---VTPSDHVEPLPILH-IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLV 344
GET V S+ LH I EP + + N K +T K+ + L
Sbjct: 367 RARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNP-------KDLT--KMIDALR 417
Query: 345 SELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGV 403
D +L V+ E ++++SG G LHL + ++ +R G ++ + P V+ +E
Sbjct: 418 KLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENYGIDVVTTPPIVVYRESIRA 477
Query: 404 ACEPFE 409
+ FE
Sbjct: 478 KSQVFE 483
sp|P30925|EF2_SULSO ELONGATION FACTOR 2 (EF-2) >gi|421729|pir||S31809 translation
elongation factor aEF-2 - Sulfolobus solfataricus
>gi|809767|emb|CAA49157| (X69297) elongation factor 2
[Sulfolobus solfataricus] >gi|6015748|emb|CAB57575.1|
(Y18930) elongation factor 2 [Sulfolobus solfataricus]
Length = 736
Score = 141 bits (351), Expect = 2e-32
Identities = 125/486 (25%), Positives = 213/486 (43%), Gaps = 89/486 (18%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++ L K R +RN+ +IAHVDHGKTT D LL S + + A+D +EQ+RGI
Sbjct: 10 VLSLMKDRTRVRNIGIIAHVDHGKTTTSDTLLAASGIISPKVAGEALALDYLNVEQQRGI 69
Query: 61 TILAKNTAV----EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
T+ A N ++ E G IN++DTPGH DF G V R ++++DG ++VVDA EG M QT
Sbjct: 70 TVKAANISLYHEAEGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVVDAVEGIMTQTE 129
Query: 117 FVLKKALEQNLTPIVVVNKIDK----PSARPAEVVDEVLELFIEL--------------- 157
VL+++LE+ + PI+ +NK+D+ P E+++ +L++ ++
Sbjct: 130 TVLRQSLEERVRPILFINKVDRLVKELKLSPQEMLNRLLDIIRQVNNLIDMYGEPEFKEK 189
Query: 158 --------------GADDEQLDFPVVYASAIN----------GSSSMSDNPADQEHTMAN 193
D P+ IN S + A Q
Sbjct: 190 WMINPQAGNVIFGSAKDKWGFSLPMAQKKGINMKNVIDAYTASDKSKLEELAAQAPINEA 249
Query: 194 IFDTIIDHIPGPVD-----------------------NSDE--PLQFQVSLLDYNDYXXX 228
+ D I +P P++ N+D P+ F ++ + + +
Sbjct: 250 LLDAAIKFVPNPIEAQKYRIPKIWKGDLDNELAKAMLNADPNGPIVFMITDMKVDPHAGL 309
Query: 229 XXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGME 288
T++ G+ + L S R+ ++ + G R+ +E AG++ A+ G++
Sbjct: 310 VATGRVFSGTLRSGEELWLVNAKTSQ---RILQVSLYMGPTRELAEEIPAGNIAAVLGLD 366
Query: 289 DIFVGET---VTPSDHVEPLPILH-IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLV 344
GET V S+ LH I EP + + N K +T K+ + L
Sbjct: 367 RARSGETAISVGFSNVQGSFERLHYISEPVVTIAVEPKNP-------KDLT--KMIDALR 417
Query: 345 SELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGV 403
D +L V+ E ++++SG G LHL + ++ +R G ++ + P V+ +E
Sbjct: 418 KLSIEDPNLVVKINEETGEYLLSGMGFLHLEVSLQLLRENYGIDVVTTPPIVVYRESIRA 477
Query: 404 ACEPFE 409
+ FE
Sbjct: 478 KSQVFE 483
sp|Q9ZDQ1|LEPA_RICPR GTP-BINDING PROTEIN LEPA >gi|3860837|emb|CAA14737| (AJ235271)
GTP-BINDING PROTEIN LEPA (lepA) [Rickettsia prowazekii]
Length = 600
Score = 138 bits (344), Expect = 1e-31
Identities = 130/507 (25%), Positives = 228/507 (44%), Gaps = 72/507 (14%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D L++ L+AR E++++ +DS +E+ERGITI A+ +
Sbjct: 7 IRNFSIIAHIDHGKSTLADRLIEYCGGLNAR-EMSQQVLDSMDIERERGITIKAQTVRLV 65
Query: 71 Y-----NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y N +N++DTPGH DF EV R + +G +LVVD+ +G QT + +A+
Sbjct: 66 YKAKNGNTYYLNLMDTPGHVDFAYEVSRSLAACEGSLLVVDSTQGVEAQTLANVYQAIAN 125
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+ + V+NKID ++ P V ++ ++ +G D + V SA NG
Sbjct: 126 DHLIVPVLNKIDLAASEPDYVKTQIEDI---IGIDASE----AVLISAKNGIG------- 171
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ ++ + II+ +P P ++S + L+ + Y+ Y ++ V
Sbjct: 172 -----IDSVLEAIINKLPAPKESSTDILKALLVDSWYDPYLGVVILVRIIDGALRKNMRV 226
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVTPSDH 301
+ + T + + GFF + AG++ ++ + D VG+T+T
Sbjct: 227 KMMR----TNSVYTVEHVGFFTPKKHISDVLYAGEIGFFTASIKRVSDCKVGDTITDEKK 282
Query: 302 --VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
+ LP + P + F +S +++ L D S E E
Sbjct: 283 SCEQALPGFKPNIPVVFCGFYPTDS---------AEFEHLKDSLAKLRLNDASFEYE-ME 332
Query: 360 SPDKWVVSGR----GELHLSILIETMRRE-GYELQVSRPEVIIK---------------- 398
S V R G LHL I+ E + RE +L + P VI K
Sbjct: 333 SSSALGVGFRCGFLGLLHLEIIQERLSREFDLDLITTAPSVIYKINMLDGQNLEIHNPAD 392
Query: 399 --EIDGVAC--EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPAR 454
++ +A EP+ + I P+E+ G+++ +E++G LD N +A++++ +P
Sbjct: 393 LPDLQKIASMEEPWIKATIIVPDEFIGTVLSLCTEKRGIQLDHSYISN-RAKIVYKLPLN 451
Query: 455 GLI-GFTTEFMSMTRGYGIMNHTFDQY 480
++ F S ++GY D Y
Sbjct: 452 EIVYDFYDRLKSCSKGYASFEWQMDVY 478
gi|1388022 (L46591) GTP binding protein [Bartonella bacilliformis]
Length = 153
Score = 138 bits (344), Expect = 1e-31
Identities = 71/146 (48%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 467 TRGYGIMNHTFDQYLPAVKGEIGGRHRGSLISMDSGQVTSYAMGYVQERGQLFVDAGTEV 526
TRG IMN F Y P KGEIGGR G +IS D+G+ +YA+ +++RG + +DAG +V
Sbjct: 4 TRGTAIMNRLFRAYEP-YKGEIGGRINGVMISNDNGEAVAYALFNLEDRGAMVIDAGVKV 62
Query: 527 YGGMIVGEHSRDNDLTVNITKMKQQTNVRSSNKDSTSVLNTPKILSLEESLEFLGDDDYL 586
Y GMIVG HSRDNDL VN+ K K+ TN+R++ KD L P ++LE +L ++ DD+ +
Sbjct: 63 YQGMIVGIHSRDNDLEVNVLKGKKLTNMRAAGKDEAIKLTPPVKMTLERALSWIQDDELV 122
Query: 587 EVTPESIRLRKQILDKAMREKSTKKK 612
EVTP++IRLRK LD R++ K +
Sbjct: 123 EVTPKNIRLRKLYLDPNERKRFEKTR 148
sp|O51115|LEPA_BORBU GTP-BINDING PROTEIN LEPA
Length = 606
Score = 137 bits (342), Expect = 2e-31
Identities = 124/503 (24%), Positives = 217/503 (42%), Gaps = 65/503 (12%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEY 71
+N +IAH+DHGK+TL D +++++ + R + + +DS +E+ERGITI ++ + Y
Sbjct: 13 KNFCIIAHIDHGKSTLADRFIQKAKIISDR-DFKSQMLDSMDIERERGITIKSQAVTITY 71
Query: 72 NGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+N +DTPGH DF EV R + +G +L++DA +G QT A E +
Sbjct: 72 KSNDGDFYELNFVDTPGHVDFSYEVSRAISSCEGALLLIDASQGIQAQTVSNFYMAFEHD 131
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
L I V+NKID P+A V ++ +LG ++E + SA NG
Sbjct: 132 LEIIPVINKIDLPNANVDFVKKQIKN---DLGLNEE----IAISISAKNGIG-------- 176
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
+ ++ + I ++P P + +PL+ + Y+ Y IK+GD +
Sbjct: 177 ----IDDLLEAICKYVPSPRGSIKDPLRALIFDSHYDSYRGVVVHFRIFEGQIKMGDKIR 232
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETVTPSDHV 302
L T + + + G F + + +AGD + + + D+ +G+TVT D
Sbjct: 233 LM----HTNSEHLIEEIGIFKISLERKDTLEAGDVGYFIAGIKNISDVKIGDTVTLCD-- 286
Query: 303 EPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESP- 361
P L E ++ + +S + ++ K +RL D SL E S
Sbjct: 287 --FPALSPLEGFKEVKPVVFSSVYPVDANQYDDLLKAMDRL---KLNDASLTFEKDSSSA 341
Query: 362 --DKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIK-------------------- 398
+ G LHL ++ E + RE + ++ P V K
Sbjct: 342 LGHGFKCGFLGLLHLEVIQERIEREFNLNVILTSPSVRYKIIPKKGESYFIETPEQFPGN 401
Query: 399 EIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-ARGLI 457
E EP+ + I P E+ G+I+ ++G ++ + LI+ +P + L
Sbjct: 402 EAIESVLEPYIKANIIVPTEFLGNIMSVCLLKRGVQTNLIYLDTKRVELIYKMPLSEILF 461
Query: 458 GFTTEFMSMTRGYGIMNHTFDQY 480
F + S++RGY ++ Y
Sbjct: 462 DFYDKIKSVSRGYASFDYELLDY 484
emb|CAB66240.1| (AL136503) GTP-binding protein. [Streptomyces coelicolor A3(2)]
Length = 622
Score = 137 bits (341), Expect = 3e-31
Identities = 140/514 (27%), Positives = 227/514 (43%), Gaps = 66/514 (12%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN +IAH+DHGK+TL D +L+ + ++ R+ A+ +D +E+ERGITI ++ +
Sbjct: 19 IRNFCIIAHIDHGKSTLADRMLQLTGVVEQRQMRAQY-LDRMDIERERGITIKSQAVRLP 77
Query: 71 YNGTR-------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ + +N++DTPGH DF EV R + +G +L+VDA +G QT L A+
Sbjct: 78 WAPSHDKGATHILNMIDTPGHVDFTYEVSRSLAACEGTILLVDAAQGIEAQTLANLYLAM 137
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E +LT I V+NKID P+A+P + +E+ L +G D + V+ SA G
Sbjct: 138 ENDLTIIPVLNKIDLPAAQPEKFAEELANL---VGCDPDD----VLKVSAKTGLG----- 185
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + D ++ +P PV D P + + Y+ Y + +
Sbjct: 186 -------VDVLLDKVVAEVPAPVGVKDAPARAMIFDSVYDSYRGVVTYVRVIDGQLNKRE 238
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDI---FVGETVTPSD 300
+ + G+T L + + G LI +G++D+ VG+TVT S
Sbjct: 239 RIRMMS-TGATHELLEIGTNSPEMLSADGLGVGEVGYLI--TGVKDVRQSKVGDTVT-SQ 294
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
H L + M F + P G + ++ E L D +L E S
Sbjct: 295 HKGATEALGGYKDPRPMVF-SGLYPLDGSD-----YPELREALDKLQLNDAALVYEPETS 348
Query: 361 PD---KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEI--DGV----------- 403
+ V G LHL ++ E + RE G +L + P V+ + I DG
Sbjct: 349 AALGFGFRVGFLGLLHLDVIRERLEREFGLDLIATAPNVVYRVIMEDGTEHTVTNPSEFP 408
Query: 404 ------ACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-ARGL 456
EP R I P E+ GSI++ R+G +L M + + + +P A +
Sbjct: 409 EGKINEVYEPVVRATILAPTEFIGSIMELCQTRRGTLLGMDYLSEDRVEIRYTLPLAEIV 468
Query: 457 IGFTTEFMSMTRGYGIMNH--TFDQYLPAVKGEI 488
F + S TRGY +++ T +Q VK +I
Sbjct: 469 FDFFDQLKSKTRGYASLDYEPTGEQTSSLVKVDI 502
sp|O83523|LEPA_TREPA GTP-BINDING PROTEIN LEPA >gi|3322802 (AE001227) GTP-binding
membrane protein (lepA) [Treponema pallidum]
Length = 605
Score = 137 bits (341), Expect = 3e-31
Identities = 135/496 (27%), Positives = 220/496 (44%), Gaps = 59/496 (11%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
+RN ++AH+DHGK+TL D L+++++ ++ R + A+ D+ LE+ERGITI + +
Sbjct: 10 VRNFCIVAHIDHGKSTLADRLIERTRAVEERLQHAQMT-DNMELERERGITIKSHAVCIP 68
Query: 71 Y---NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y +GT +N +DTPGHADF EV R + +G +LVVDA +G QT L LE
Sbjct: 69 YTDAHGTEYVLNFVDTPGHADFAYEVSRAIAACEGALLVVDATQGVESQTISNLYLVLEH 128
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
NL I V+NKID P+A V+ +V +LG D AS++ S+ +N
Sbjct: 129 NLEIIPVINKIDLPTADVPRVLQQVEH---DLGLDP---------ASSVLISAKTGEN-- 174
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ +FD II IP P + LQ V Y+ Y + G +
Sbjct: 175 -----VDALFDAIITRIPPPQGSGTAALQALVFDCHYDQYRGVVVHIRVFEGQVTSGMVI 229
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA-LSGMEDIFVGETVTPSDHVEP 304
+G+ T +F F + R+ + G L A + + D+ VG+T+T D P
Sbjct: 230 RFMS-NGAEYRVEETGVFVFNLIAREALCAGDVGYLSANVKTVSDVQVGDTIT--DASCP 286
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES---P 361
++ ++ P E + + R+ ERL D S+ E S
Sbjct: 287 CDTPRAGFRRVKPVVFSSVYPVDTDECEQL--REALERLA---LNDASISWERDSSLALG 341
Query: 362 DKWVVSGRGELHLSILIETMRREGYELQV-SRPE----VIIKEIDGVAC----------- 405
+ G LHL ++ + + RE + + + P+ V +K + C
Sbjct: 342 HGFRCGFLGLLHLEVVQQRLEREFNQTVIFTAPQVQYYVFLKTGQRIVCDNPAHYPLEQE 401
Query: 406 -----EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-ARGLIGF 459
EP+ R I TP E G+++ E++ + + L++ +P A L GF
Sbjct: 402 IAQVHEPYIRATIITPTEVLGAVMTLCIEKRAYQTAVNYLDQKRVELVYEMPLAEILFGF 461
Query: 460 TTEFMSMTRGYGIMNH 475
S++ GY ++
Sbjct: 462 YDRLKSISHGYASFDY 477
dbj|BAA04544| (D17650) ORF80 protein [Bacillus subtilis]
Length = 327
Score = 136 bits (338), Expect = 7e-31
Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 33/296 (11%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D +L+++ + R E+ E+ +DS LE+ERGITI + ++
Sbjct: 14 IRNFSIIAHIDHGKSTLADRILEKTSAITQR-EMKEQLLDSMDLERERGITIKLNSVQLK 72
Query: 71 YNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y +++DTPGH DF EV R + +G +LVVDA +G QT + AL+
Sbjct: 73 YKAKDGEEYIFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDN 132
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+L + V+NKID PSA P V EV ++ +G D + V ASA G
Sbjct: 133 DLEILPVINKIDLPSAEPERVRQEVEDV---IGLDASE----AVLASAKAGIG------- 178
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ I + I++ +P P + + PL+ + Y+ Y T+K G +
Sbjct: 179 -----IEEILEQIVEKVPAPTGDPEAPLKALIFDSLYDAYRGVVAYIRVVEGTVKPGQKI 233
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL----IALSGMEDIFVGETVT 297
K+ + K F VT++ G F E GD+ ++ + D VG+T+T
Sbjct: 234 ---KMMATGKEFEVTEV-GVFTPKATPTNELTVGDVGFLTASIKNVGDTRVGDTIT 285
sp|P53530|LEPA_MYCLE GTP-BINDING PROTEIN LEPA >gi|2127460|pir||S72609 lepA protein -
Mycobacterium leprae >gi|466991 (U00016) lepA;
B1937_f3_81 [Mycobacterium leprae]
Length = 646
Score = 135 bits (336), Expect = 1e-30
Identities = 124/501 (24%), Positives = 217/501 (42%), Gaps = 67/501 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN +IAH+DHGK+TL D +L+ + +D R A+ +D +E+ERGITI A+N +
Sbjct: 44 IRNFCIIAHIDHGKSTLADRMLQLTGVVDERSMRAQY-LDRMDIERERGITIKAQNVRLS 102
Query: 71 YNGTR--------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
++ T ++++DTPGH DF EV R ++ +G VL+VDA +G QT L A
Sbjct: 103 WSVTAGGTTENYVLHLIDTPGHVDFTYEVSRALEACEGAVLLVDAVQGIEAQTLANLYLA 162
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
LE++LT I V+NKID P+A P E+ + D V+ S G
Sbjct: 163 LERDLTIIPVLNKIDLPAADPDRYAAEIAHIIGYESGD-------VLRVSGKTGEG---- 211
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
++++ D ++ +P P + D P + + Y+ Y I
Sbjct: 212 --------VSDLLDEVVRRVPHPQGDPDAPTRAMIFDSVYDIYRGVVTYVRVVDGKISPR 263
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL-IALSGMEDI---FVGETVTP 298
+ + + + + V G + + G++ ++G++D+ VG+TVT
Sbjct: 264 ERIAMMSTGATYELLEV----GIVSPEPKASAGLGVGEVGYLITGVKDVRQSKVGDTVTT 319
Query: 299 SDHVEPLPILHIDEPTLQM---TFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRV 355
+ P+ EP + + ++S + + + L E +T V+L V
Sbjct: 320 VRYGATEPLTGYREPKPMVYSGLYPVDSSDYPSLRDALGKLQLNDAALTYEPETSVALGV 379
Query: 356 ENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEID------------- 401
+ G LH+ I E + RE +L + P V+ + +
Sbjct: 380 -------GYRCGFLGLLHIDITRERLEREFDLDLISTSPNVVYRVVTEDNTEIVVTNPSD 432
Query: 402 ------GVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARG 455
EP ++ I P E+ G+I++ R+G++ M + L +++P
Sbjct: 433 WPEGKIRTVYEPVVKITIIAPSEFIGTIMELCQSRRGELGGMDYLSPERVELRYIMPLGE 492
Query: 456 LI-GFTTEFMSMTRGYGIMNH 475
+I F S TRGY +++
Sbjct: 493 IIFDFFDSLKSRTRGYASLDY 513
sp|O13869|YE14_SCHPO PUTATIVE GTP-BINDING PROTEIN C1B3.04C >gi|2330738|emb|CAB11233.1|
(Z98598) putative gtp binding protein, gtpase;
Elongation factor Tu family [Schizosaccharomyces pombe]
Length = 646
Score = 133 bits (332), Expect = 3e-30
Identities = 126/506 (24%), Positives = 212/506 (40%), Gaps = 64/506 (12%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
+RN AVIAH+DHGK+TL D +LK + ++ + +D +E+ RGIT+ A+ ++
Sbjct: 58 VRNWAVIAHIDHGKSTLSDCILKLTGVINEHN-FRNQFLDKLEVERRRGITVKAQTCSMI 116
Query: 71 Y----NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
Y +N++DTPGH DF EV + +G +L+VDA +G QT A QN
Sbjct: 117 YYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQN 176
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
L I V+NK+D P+A + +V + F D + P++ +S
Sbjct: 177 LVIIPVLNKVDLPTADVDRTLIQVQQTF------DIPMSKPILVSSKTG----------- 219
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
+ I II IP P + + PL+ + YN Y IK G V
Sbjct: 220 --KNVEQILPEIIQKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFIKKGGKV- 276
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGETV-TPSDH 301
+ +T + G D E+ +AG + + +++ VG+T T +
Sbjct: 277 ---MSVNTGRKYEVQQVGIMYPDMTEVSRLRAGQVGYIIWNMKNIDEAIVGDTYSTIGSN 333
Query: 302 VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESP 361
VE LP I Q P G + + + +E+ +++ ++++ EN+ +
Sbjct: 334 VEALPGFSIP----QSMVYVGAFPLDGSDYERLND-NIEQLALND--RAINVQKENSSAL 386
Query: 362 DK-WVVSGRGELHLSILIETMRRE--------------------GYELQVSRPEVIIKEI 400
W + G LHLS+ I+ ++ E G E +S P +
Sbjct: 387 GMGWRLGFLGTLHLSVFIDRLKDEYGKELLITSPTVPYRIKYKNGREEVISNPNLFPTNH 446
Query: 401 DGVA--CEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI- 457
G++ EP I TP EY G +I+ +G D + + + +P L+
Sbjct: 447 QGISELLEPTVDATIITPSEYLGDVIKLCESCRGLQKDCTYMSESRCMIKYQLPLAHLVE 506
Query: 458 GFTTEFMSMTRGYGIMNHTFDQYLPA 483
F T G+ +++ Y+PA
Sbjct: 507 DFFGRLKGTTSGFATLDYEESDYVPA 532
sp|P23112|EF2_SULAC ELONGATION FACTOR 2 (EF-2) >gi|99254|pir||S14408 translation
elongation factor aEF-2 - Sulfolobus acidocaldarius
>gi|581563|emb|CAA38716| (X54972) elongation factor 2
[Sulfolobus acidocaldarius]
Length = 737
Score = 133 bits (332), Expect = 3e-30
Identities = 117/477 (24%), Positives = 209/477 (43%), Gaps = 90/477 (18%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++ L K +RN+ +IAHVDHGKTT D LL S + + A+D ++EQ+RGI
Sbjct: 10 VLSLMKDVTRVRNIGIIAHVDHGKTTTSDTLLAASGIISQKVAGEALALDYLSVEQQRGI 69
Query: 61 TILAKNTA----VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
T+ A N + ++ G IN++DTPGH DF G V R ++++DG ++V+DA EG M QT
Sbjct: 70 TVKAANISLYHEIDGKGYVINLIDTPGHVDFSGRVTRSLRVLDGSIVVIDAVEGIMTQTE 129
Query: 117 FVLKKALEQNLTPIVVVNKIDK----PSARPAEVVDEVLELFIELGADDEQLDFP----- 167
VL+++LE + PI+ +NK+D+ E+ +++L IE+ E P
Sbjct: 130 TVLRQSLEGRVRPILFINKVDRLIKELKLSSQEIQKRLIDLIIEVNNLIETYGEPEFKDQ 189
Query: 168 ---------VVYASA-------------------------INGSSSMSDNPADQEHTMAN 193
VV+ SA +G + + A +
Sbjct: 190 WKIKPELGNVVFGSAKDKWGFSVPMAGKRGVKFSDVVNAYTSGDKAKIEELASKVPIHEA 249
Query: 194 IFDTIIDHIPGPVD-----------------------NSDE--PLQFQVSLLDYNDYXXX 228
+ D +I +P P D N+D P+ ++ + + +
Sbjct: 250 LLDAVIKFVPNPRDSQKYRIPKIWKGDLDSEIAKAMINADPNGPIVMMINDMKVDPHAGL 309
Query: 229 XXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGME 288
T++ G+ V L + + R+ ++ + G R+ +E G++ A GM+
Sbjct: 310 VATGRVFSGTLRAGEEVWLV---NAKRQQRILQVSLYMGAIRELAEEIPVGNIAAALGMD 366
Query: 289 DIFVGETVTPSDHVEPL-----PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERL 343
GET + + + +I EP + ++ N K +T K+ + L
Sbjct: 367 AARSGETGVDIRFKDSVLGSFEKLHYISEPVVTISVEPRNP-------KDLT--KMIDAL 417
Query: 344 VSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
D +L V+ E ++++SG G LHL + ++ ++ G ++ + P V+ +E
Sbjct: 418 RKLSIEDSNLVVKINEETGEYLLSGMGFLHLEVSLQLLKENYGLDVVTTPPIVVYRE 474
sp|P33159|EF2_DESMO ELONGATION FACTOR 2 (EF-2) >gi|99245|pir||S25166 translation
elongation factor aEF-2 - Desulfurococcus mobilis
>gi|40807|emb|CAA48150| (X68014) elongation factor 2
[Desulfurococcus mobilis]
Length = 734
Score = 131 bits (327), Expect = 1e-29
Identities = 122/482 (25%), Positives = 204/482 (42%), Gaps = 84/482 (17%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++K+ + E IRN+ + AHVDHGKTTL D LL + L + A+D +EQ+R +
Sbjct: 10 VLKIMRNIEQIRNIGITAHVDHGKTTLSDSLLSAAGLLSEKIAGQALALDYLDVEQKRQM 69
Query: 61 TILAKNTAV--EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
T+ A N ++ EY G IN++DTPGH DF + R ++++DG ++VVDA EG M QT
Sbjct: 70 TVKAANASLYHEYKGKPYLINLIDTPGHVDFQSKTIRALRVIDGAIVVVDAVEGVMTQTE 129
Query: 117 FVLKKALEQNLTPIVVVNKID---KPSARPAEVVDEVLEL------FIELGADDE----- 162
L+ ALE+ + P++ +NKID K P E+ ++++ I AD E
Sbjct: 130 MYLRVALEERVRPVLFINKIDRLIKELRSPNEIQQRLVQIVKDVNTLIATYADKEFQKAW 189
Query: 163 -----------------QLDFPVVYASAINGSSSMSDNPADQEHTM---------ANIFD 196
L P+V I S + +E I D
Sbjct: 190 LLDPMKGQAFGSARDRWGLTIPLVQQKGIKFSDIVDVYTKGKEAVAELQKAAPLHEAILD 249
Query: 197 TIIDHIPGPVD-------------------------NSDEPLQFQVSLLDYNDYXXXXXX 231
++ ++P P D + + PL V+ + + +
Sbjct: 250 MVVKYVPNPRDAQRYRIPKIWHGDLNHEAVKYMMEADPNGPLVMLVNDIRVDPHAGLVAT 309
Query: 232 XXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIF 291
T++ G+ V L + RV ++ + G R+ E AG++ A +E
Sbjct: 310 GRIYSGTLRAGEEVWLV---NARVPQRVLQVSLYMGPYRELADEITAGNIAAALALEKAR 366
Query: 292 VGETVTP---SDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQ 348
GETV D + P L + ++ + +P K+ + L
Sbjct: 367 SGETVVAMKYKDSMTPFEKLRMITESVVTVAIEPKNP--------QQLTKLVDALYKLHL 418
Query: 349 TDVSLRVENTESPDKWVVSGRGELHLSILIETMR-REGYELQVSRPEVIIKEIDGVACEP 407
D SL V+ E ++++SG G LH+ I + ++ G E+ S P ++ +E + +
Sbjct: 419 EDPSLIVKINEETGEYLLSGVGTLHIEIALTLLKDLYGLEVVASPPVIVYRETVRESSQV 478
Query: 408 FE 409
FE
Sbjct: 479 FE 480
gi|146599 (K00426) LepA protein (lepA) [Escherichia coli]
>gi|987644|dbj|BAA10916| (D64044) lepA protein
[Escherichia coli]
Length = 598
Score = 131 bits (326), Expect = 2e-29
Identities = 132/505 (26%), Positives = 225/505 (44%), Gaps = 65/505 (12%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D +++ L R E+ + +DS LE+ERGITI A++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVT 60
Query: 69 VEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
++Y + ++N +DTPGH DF EV R + +G +LVVDA +G QT A+
Sbjct: 61 LDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E +L + V+NKID P+A P V +E+ ++ +G D + +++ + S
Sbjct: 121 EMDLEVVPVLNKIDLPAADPERVAEEIEDI---VGIDAHRRG--ALFSENRRWCAGRS-R 174
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ H+ A + + PLQ + +++Y T++ GD
Sbjct: 175 TSGARHSAAG-------------SDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGD 221
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDH-- 301
V + G T N +F +DR E++ + G L+ VG+T+T + +
Sbjct: 222 KVKVMS-TGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIGAPVGDTLTLARNPA 280
Query: 302 VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESP 361
+ LP +P + +S + L D SL E ES
Sbjct: 281 EKALPGFKKVKPQVYAGLFPVSSD---------DYEAFRDALGKLSLNDASLFYE-PESS 330
Query: 362 DKWVVSGR----GELHLSILIETMRRE------------GYELQVSRPEVI-------IK 398
R G LH+ I+ E + RE YE++ + EVI +
Sbjct: 331 SALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLP 390
Query: 399 EIDGV--ACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-ARG 455
++ + EP + P+ Y G++I E++G +M GN Q L + +P A
Sbjct: 391 AVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN-QVALTYEIPMAEV 449
Query: 456 LIGFTTEFMSMTRGYGIMNHTFDQY 480
++ F S +RGY +++ F ++
Sbjct: 450 VLDFFDRLKSTSRGYASLDYNFKRF 474
pir||BVECLA lepA protein - Escherichia coli
Length = 598
Score = 129 bits (321), Expect = 7e-29
Identities = 131/505 (25%), Positives = 224/505 (43%), Gaps = 65/505 (12%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
++IRN ++IAH+DHGK+TL D +++ L R E+ + +DS LE+ERGI I A++
Sbjct: 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGINIKAQSVT 60
Query: 69 VEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
++Y + ++N +DTPGH DF EV R + +G +LVVDA +G QT A+
Sbjct: 61 LDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM 120
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
E +L + V+NKID P+A P V +E+ ++ +G D + +++ + S
Sbjct: 121 EMDLEVVPVLNKIDLPAADPERVAEEIEDI---VGIDAHRRG--ALFSENRRWCAGRS-R 174
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ H+ A + + PLQ + +++Y T++ GD
Sbjct: 175 TSGARHSAAG-------------SDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGD 221
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDH-- 301
V + G T N +F +DR E++ + G L+ VG+T+T + +
Sbjct: 222 KVKVMS-TGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIGAPVGDTLTLARNPA 280
Query: 302 VEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESP 361
+ LP +P + +S + L D SL E ES
Sbjct: 281 EKALPGFKKVKPQVYAGLFPVSSD---------DYEAFRDALGKLSLNDASLFYE-PESS 330
Query: 362 DKWVVSGR----GELHLSILIETMRRE------------GYELQVSRPEVI-------IK 398
R G LH+ I+ E + RE YE++ + EVI +
Sbjct: 331 SALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLP 390
Query: 399 EIDGV--ACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP-ARG 455
++ + EP + P+ Y G++I E++G +M GN Q L + +P A
Sbjct: 391 AVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGN-QVALTYEIPMAEV 449
Query: 456 LIGFTTEFMSMTRGYGIMNHTFDQY 480
++ F S +RGY +++ F ++
Sbjct: 450 VLDFFDRLKSTSRGYASLDYNFKRF 474
sp|P34617|YO81_CAEEL HYPOTHETICAL GTP-BINDING PROTEIN ZK1236.1 IN CHROMOSOME III
Length = 645
Score = 127 bits (315), Expect = 3e-28
Identities = 126/522 (24%), Positives = 225/522 (42%), Gaps = 78/522 (14%)
Query: 1 MIKLTKLRED-IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERG 59
++ L++ D IRN ++AHVDHGK+TL D LL+ + ++ + +D +E+ERG
Sbjct: 31 LVNLSEFTPDKIRNFGIVAHVDHGKSTLADRLLEMCGAVPPGQK---QMLDKLQVERERG 87
Query: 60 ITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
IT+ A+ A+ + G +N++DTPGH DF EV R + + DG++L+V A +G QT
Sbjct: 88 ITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQGVQAQTIANF 147
Query: 120 KKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSS 179
A E+N+ I V+NKID P A V ++ LF E ++ ++ SA +G +
Sbjct: 148 WLAFEKNIQIIPVINKIDLPGADIKSVETQLKNLF-EFNPEE------CLHISAKSGLN- 199
Query: 180 MSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ + + IID +P P D P + + ++ + ++
Sbjct: 200 -----------VDKVLEAIIDRVPAPTAIIDAPFRSMIFDSYFDHFRGAIAHIMVKEGSV 248
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVGET 295
K GD + + + K + V+++ G + + E +AG + + + + VGET
Sbjct: 249 KKGDKIQSYQ---NEKVYDVSEV-GVMRPEMVKCTELRAGQVGYLVCNMRTVNEAVVGET 304
Query: 296 V----TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDV 351
+ T D V+ + +PT+ F + + ++ ERL +
Sbjct: 305 LFAETTSRDSVKTFAEIKGVKPTVYAGL------FPVETSDYESLKQAVERLCLNDPSVT 358
Query: 352 SLRVENTESPDKWVVSGRGELHLSIL---------------------------IETMRRE 384
+ + W + G LH+ + ET+R++
Sbjct: 359 VIPDSSKALGLGWRIGFLGVLHMEVFGARLSQEYDASVILCQPSVEYRAKIKDNETIRKK 418
Query: 385 GY----ELQVSRPEVIIKEID-GVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQI 439
Y E+++ P E D EP +V++ P E G++ SE +G+ +I
Sbjct: 419 RYDGMEEIRILDPSKFPDESDVDSFLEPMVKVRMIVPNEMMGTVNGLCSECRGER--GEI 476
Query: 440 TGNGQARLIFL--VP-ARGLIGFTTEFMSMTRGYGIMNHTFD 478
T RL+ L +P A + F +T GY ++ D
Sbjct: 477 TSIDSTRLVILWRLPLAEVAVDFFERLKKLTSGYASFDYEPD 518
sp|O66428|EFG_AQUAE ELONGATION FACTOR G (EF-G) >gi|2982776 (AE000669) elongation factor
EF-G [Aquifex aeolicus]
Length = 699
Score = 125 bits (310), Expect = 1e-27
Identities = 127/493 (25%), Positives = 199/493 (39%), Gaps = 115/493 (23%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E +RN+ ++AH+D GKTT + +L + E+ E A MD E+ERGITI
Sbjct: 8 EKLRNIGIVAHIDAGKTTTTERILYYTGKTYKIGEVHEGAATMDWMPQEKERGITITVAT 67
Query: 67 TAVEY--NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT----------- 111
TA + NG R INI+DTPGH DF EV R MK++DG+V + A EG
Sbjct: 68 TACYWTRNGERYQINIIDTPGHVDFSVEVVRSMKVLDGIVFIFSAVEGVQPQSEANWRWA 127
Query: 112 ----MPQTRFVLK------------KALEQNLTPIVVVNKIDKPSARPAEVVDEVLEL-- 153
+P+ F+ K K +E+ LT V +I + E V +++E+
Sbjct: 128 DRFQVPRIAFINKMDRLGADFYRVFKEIEEKLTIKPVAIQIPLGAEDQFEGVIDLMEMKA 187
Query: 154 --FIE--LGADDEQLDFPVVYASA-----------------------INGSSSMSDN--- 183
++E LGA E +D P Y + G D
Sbjct: 188 IRWLEETLGAKYEVVDIPPEYQEKAQEWREKMIETIVETDDELMEKYLEGQEISIDELRK 247
Query: 184 -----------------PADQEHTMANIFDTIIDHIPGPVD------------------- 207
A + + + D +ID++P P+D
Sbjct: 248 ALRKATIERKLVPVLCGSAFKNKGVQPLLDAVIDYLPSPIDLPPVKGTNPKTGEEEVRHP 307
Query: 208 NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFG 267
+ DEP + + Y T+K G V + D + R +L
Sbjct: 308 SDDEPFCAYAFKVMSDPYAGQLTYIRVFSGTLKAGSYVYNATKD---EKQRAGRLLLMHA 364
Query: 268 LDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFA 327
R+EIQ+ AG++ A+ G+ D G+T+ H L L +P + M P
Sbjct: 365 NSREEIQQVSAGEICAVVGL-DAATGDTLCDEKHPIILEKLEFPDPVISMAI----EPKT 419
Query: 328 GREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GY 386
++ K+ + L ++ D + R + ++ G GELHL I+++ M+RE G
Sbjct: 420 KKD-----QEKLSQVLNKFMKEDPTFRATTDPETGQILIHGMGELHLEIMVDRMKREYGI 474
Query: 387 ELQVSRPEVIIKE 399
E+ V +P+V KE
Sbjct: 475 EVNVGKPQVAYKE 487
Score = 50.0 bits (117), Expect = 6e-05
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL-VPARGL 456
K+ D V EP V+++TPE+Y G +I L+ R+G ++ M+ G +I VP +
Sbjct: 597 KKADPVLLEPIMEVEVETPEKYVGDVIGDLNSRRGKIMGME--NKGVITVIKAHVPLAEM 654
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T S+T+G G F Y
Sbjct: 655 FGYATTLRSLTQGRGTFIMKFSHY 678
sp|P71739|LEPA_MYCTU GTP-BINDING PROTEIN LEPA >gi|1655655|emb|CAB03723| (Z81368) lepA
[Mycobacterium tuberculosis]
Length = 653
Score = 125 bits (310), Expect = 1e-27
Identities = 126/531 (23%), Positives = 228/531 (42%), Gaps = 89/531 (16%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN +IAH+DHGK+TL D +L+ + +D R A+ +D +E+ERGITI A+N +
Sbjct: 52 IRNFCIIAHIDHGKSTLADRMLQLTGVVDERSMRAQY-LDRMDIERERGITIKAQNVRLP 110
Query: 71 YNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+ + ++++DTPGH DF EV R ++ +G VL+VDA +G QT L AL+++
Sbjct: 111 WRVDKTDYVLHLIDTPGHVDFTYEVSRALEACEGAVLLVDAAQGIEAQTLANLYLALDRD 170
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
L I V+NKID P+A P E+ + +G + + V+ S G
Sbjct: 171 LHIIPVLNKIDLPAADPDRYAAEMAHI---IGCEPAE----VLRVSGKTGEG-------- 215
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
++++ D ++ +P P +++ P + + Y+ Y I + +
Sbjct: 216 ----VSDLLDEVVRQVPPPQGDAEAPTRAMIFDSVYDIYRGVVTYVRVVDGKISPRERIM 271
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL-IALSGMEDI---FVGETVTP---- 298
+ + + V G + + + G++ ++G++D+ VG+TVT
Sbjct: 272 MMSTGATHELLEV----GIVSPEPKPCEGLGVGEVGYLITGVKDVRQSKVGDTVTSLSRA 327
Query: 299 --------SDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTD 350
+ + EP P+++ + + S + + + L E +T
Sbjct: 328 RGAAAEALTGYREPKPMVY------SGLYPVDGSDYPNLRDALDKLQLNDAALTYEPETS 381
Query: 351 VSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVI--IKEIDG----- 402
V+L + G LH+ I E + RE G +L + P V+ + + DG
Sbjct: 382 VALGF-------GFRCGFLGLLHMEITRERLEREFGLDLISTSPNVVYRVHKDDGTEIRV 434
Query: 403 ------------VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL 450
EP + I P E+ G+I++ R+G++ M + L +
Sbjct: 435 TNPSDWPEGKIRTVYEPVVKTTIIAPSEFIGTIMELCQSRRGELGGMDYLSPERVELRYT 494
Query: 451 VPARGLI-GFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIGGRHRGSLISMD 500
+P +I F S TRGY +++ E G +L+ +D
Sbjct: 495 MPLGEIIFDFFDALKSRTRGYASLDY-----------EEAGEQEAALVKVD 534
gi|1184709 (U41261) elongation factor 2 [unidentified archaeon 4B7]
Length = 725
Score = 123 bits (306), Expect = 4e-27
Identities = 65/144 (45%), Positives = 88/144 (60%), Gaps = 4/144 (2%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++K+ + IRN VIAHVDHGKTT+ D LL S + + AMDS EQERGI
Sbjct: 10 VMKIISDKNKIRNFGVIAHVDHGKTTMSDSLLAHSGIISPSTAGSALAMDSMKAEQERGI 69
Query: 61 TILAKNTAVEYNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
TI+ N + Y IN++DTPGH DF G V R ++ +DG V+V DA EG M QT
Sbjct: 70 TIVQANVTLHYQEDDKDYVINMIDTPGHVDFSGRVIRSLRAIDGSVVVCDAVEGIMTQTE 129
Query: 117 FVLKKALEQNLTPIVVVNKIDKPS 140
V + +LE+ + P++ +NKID+ S
Sbjct: 130 TVTRMSLEERVRPVLYINKIDRLS 153
Score = 48.4 bits (113), Expect = 2e-04
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
K+ D T+ +D + + RV + F R+++ E AG++ AL G+ ++ G+T++
Sbjct: 317 KIKDGQTIYIID-TKREGRVQSVNFFMSNVREQVGELGAGNIPALLGLTEVRAGQTLST- 374
Query: 300 DHVEPLPIL----HIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRV 355
V+ +P+ ++ EP +QM + + + + +E D +L +
Sbjct: 375 --VKGIPVFEASKYVSEPVVQMAIEPKHPKDLPKLVECLRKLTIE---------DPNLVI 423
Query: 356 ENTESPDKWVVSGRGELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEP 407
+ E + +++G G LHL + + ++ E+ S P + +E CEP
Sbjct: 424 KIDEETGETIMAGMGVLHLDVAVNLIKDAKIEIITSEPLINYRETITGGCEP 475
sp|Q55002|OTRA_STRRM OXYTETRACYCLINE RESISTANCE PROTEIN >gi|99013|pir||S18572 otrA
protein - Streptomyces rimosus >gi|47473|emb|CAA37477|
(X53401) otrA [Streptomyces rimosus]
Length = 663
Score = 120 bits (297), Expect = 4e-26
Identities = 113/428 (26%), Positives = 177/428 (40%), Gaps = 70/428 (16%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ ++AHVD GKT+L + LL ++ +D + DS LE++RGITI +
Sbjct: 5 NLGILAHVDAGKTSLTERLLHRTGVIDEVGSVDAGTTTTDSMELERQRGITIRSAVATFV 64
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+ ++N++DTPGH+DF EVER + ++DG VLVV A EG PQTR +++ + +
Sbjct: 65 LDDLKVNLIDTPGHSDFISEVERALGVLDGAVLVVSAVEGVQPQTRILMRTLRRLGIPTL 124
Query: 131 VVVNKIDKPSARPAEVVDEVLELF--------------------IELGADDEQLDFPVVY 170
V VNKID+ ARP V+ E+ + I LG D + DF V
Sbjct: 125 VFVNKIDRGGARPDGVLREIRDRLTPAAVALSAVADAGTPRARAIALGPDTDP-DFAVRV 183
Query: 171 ASAI-NGSSSMSDNPADQEHTMA--------------------------------NIFDT 197
+ + + D+EH + ++
Sbjct: 184 GELLADHDDAFLTAYLDEEHVLTEKEYAEELAAQTARGLVHPVYFGSALTGEGLDHLVHG 243
Query: 198 IIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTK-- 255
I + +P + D PL+ V +D T+ DSVTL ++D + +
Sbjct: 244 IRELLPSVHASQDAPLRATVFKVDRGARGEAVAYLRLVSGTLGTRDSVTLHRVDHTGRVT 303
Query: 256 --NFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEP 313
R+T L F A AGD+ G++D+ VG+ D P P P
Sbjct: 304 EHAGRITALRVFEHGSATSETRATAGDIAQAWGLKDVRVGDRAGHLD--GPPPRNFFAPP 361
Query: 314 TLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELH 373
+L+ AGR R++ E + LR ++ E+ VV GE+
Sbjct: 362 SLETVIRPERPEEAGR-------LHAALRMLDEQDPSIDLR-QDEENAAGAVVRLYGEVQ 413
Query: 374 LSILIETM 381
IL T+
Sbjct: 414 KEILGSTL 421
gi|3004655 (AF017777) waclaw [Drosophila melanogaster]
Length = 679
Score = 119 bits (296), Expect = 6e-26
Identities = 127/516 (24%), Positives = 214/516 (40%), Gaps = 73/516 (14%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
E IRN ++IAHVDHGK+TL D LL+ + + AR + +D+ +E+ERGIT+ A+ +
Sbjct: 97 ERIRNFSIIAHVDHGKSTLADRLLELTGAI-ARNGGQHQVLDNLQVERERGITVKAQTAS 155
Query: 69 VEYNGTR----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+ + +N++DTPGH DF EV R + DGVVL+VDA G QT A +
Sbjct: 156 IFHRHKGQLYLLNLIDTPGHVDFSNEVSRSLAACDGVVLLVDACHGVQAQTVANYHLAKQ 215
Query: 125 QNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP 184
+ L + V+NKID A P +V ++ LF G D ++ V+ SA G+
Sbjct: 216 RQLAVVPVLNKIDIKHANPDQVCQDLKLLF---GIDPDE----VLRVSAKLGTG------ 262
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
++ + + +I+ +P P D + + ++ Y ++
Sbjct: 263 ------VSEVLERVIETVPPPQVQRDSDFRALIFDSWFDKYRGALNLIYVLNGKLEQNQD 316
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD--LIA--LSGMEDIFVGETVTPSD 300
+ +TK K + + AG LIA + ++ VG+T+
Sbjct: 317 IQ----SLATKKVYSVKSISVLRPAECPVPDVSAGQVGLIACNMRNSKESIVGDTI---- 368
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
H++ + Q L F + K V R +++V D ++ V+ S
Sbjct: 369 HLKNQAVAAAGSYRPQQP-LVFAGVFPADQSKHVALRSAIDKMV---LNDSAVTVKIDSS 424
Query: 361 P---DKWVVSGRGELHLSILIETMRRE------------GYELQVSRPEVI------IKE 399
P W + G LH+ + + + +E Y L +S P++I +
Sbjct: 425 PALGQGWRLGFLGLLHMEVFCQRLEQEHGAEPIITAPSVTYRLVLSNPKMIKQQGRDTMD 484
Query: 400 IDGVAC-----------EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLI 448
I A EP I TP EY G +I ER+G + +
Sbjct: 485 ISNAALFPEPHSIKEYYEPLVLGTIITPTEYVGQVISLCVERRGLQQSSVNIDETRVLMK 544
Query: 449 FLVPARGLI-GFTTEFMSMTRGYGIMNHTFDQYLPA 483
+++P +I F S++ GY ++ Y P+
Sbjct: 545 YVLPLSEIILDFHDRLKSLSSGYASFSYEDHGYHPS 580
gb|AAF01499.1|L42544_1 (L42544) TetT [Streptococcus pyogenes]
Length = 651
Score = 118 bits (294), Expect = 1e-25
Identities = 59/144 (40%), Positives = 90/144 (61%), Gaps = 2/144 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ ++AHVD GKTT+ + LL +S ++ R + A DS LE++RGITI A +
Sbjct: 3 IINIGILAHVDAGKTTVTEGLLYKSGAINKIGRVDNATTTTDSMELERDRGITIRASTVS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
YN T++NI+DTPGH DF EVER +K++DG +LV+ A EG QT+ + ++ N+
Sbjct: 63 FNYNDTKVNIIDTPGHMDFIAEVERTLKVLDGAILVISAKEGIQVQTKVIFNTLVKLNIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLE 152
++ VNKID+ E+ ++ E
Sbjct: 123 TLIFVNKIDRKGVCLDEIYTQIQE 146
emb|CAB58373.1| (AL121859) elongation factor 2 [Schizosaccharomyces pombe]
Length = 842
Score = 118 bits (292), Expect = 2e-25
Identities = 75/203 (36%), Positives = 114/203 (55%), Gaps = 39/203 (19%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
++RN++VIAHVDHGK+TL D L++++ + A K R MD+ A EQERG+TI K+TA+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTI--KSTAI 75
Query: 70 EY----------------NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
+GT +N++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDKP--------------SARPAEVVDEVLELFIEL 157
QT VL++AL + + P+VVVNK+D+ AR E V+ V+ + +
Sbjct: 136 CVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK 195
Query: 158 GADDEQLDFP----VVYASAING 176
D Q+ FP V +AS ++G
Sbjct: 196 VLGDCQV-FPDKGTVAFASGLHG 217
sp|O14460|EF2_SCHPO ELONGATION FACTOR 2 (EF-2) >gi|2641944|dbj|BAA23590| (D83975)
elongation factor 2 [Schizosaccharomyces pombe]
>gi|2641946|dbj|BAA23591| (D83976) elongation factor 2
[Schizosaccharomyces pombe]
Length = 842
Score = 118 bits (292), Expect = 2e-25
Identities = 75/203 (36%), Positives = 114/203 (55%), Gaps = 39/203 (19%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
++RN++VIAHVDHGK+TL D L++++ + A K R MD+ A EQERG+TI K+TA+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTI--KSTAI 75
Query: 70 EY----------------NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
+GT +N++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLFAEMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDKP--------------SARPAEVVDEVLELFIEL 157
QT VL++AL + + P+VVVNK+D+ AR E V+ V+ + +
Sbjct: 136 CVQTETVLRQALGERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDK 195
Query: 158 GADDEQLDFP----VVYASAING 176
D Q+ FP V +AS ++G
Sbjct: 196 VLGDCQV-FPDKGTVAFASGLHG 217
sp|P47335|EFG_MYCGE ELONGATION FACTOR G (EF-G) >gi|1361874|pir||H64209 translation
elongation factor G - Mycoplasma genitalium (SGC3)
>gi|3844676 (U39689) elongation factor G (fus)
[Mycoplasma genitalium]
Length = 688
Score = 116 bits (288), Expect = 5e-25
Identities = 122/493 (24%), Positives = 200/493 (39%), Gaps = 120/493 (24%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKN 66
++ RN ++AH+D GKTT + +L S + E E MD E+ERGITI +
Sbjct: 8 KNFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT--------------- 111
T+V + +N++DTPGH DF EVER ++++DG + V+DA G
Sbjct: 68 TSVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYE 127
Query: 112 MPQTRFVLK---------------------KAL--------EQNLTPIVVV--------- 133
+P+ FV K KA+ E + I+ +
Sbjct: 128 VPRVIFVNKMDKTGANFERSVLSIQQRLGVKAVPIQFPIGAENDFNGIIDIITKKAYFFD 187
Query: 134 -----NKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD------ 182
N I+KP P + VD+V +L+ L + LD ++ A ++G D
Sbjct: 188 GNKEENAIEKPI--PEQYVDQVEKLYNNLVEEVASLDDQLM-ADYLDGKPIEIDAIKNAI 244
Query: 183 --------------NPADQEHTMANIFDTIIDHIPGPVD-----------------NSDE 211
A + + + D ++D +P PVD SD+
Sbjct: 245 RNGVIHCKFFPVLCGSAFKNKGIKLLLDAVVDFLPSPVDVPPAKAIDANNKEISIKASDD 304
Query: 212 P----LQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFG 267
L F+V+ + + +K G V K K RV++L
Sbjct: 305 ANFIGLAFKVAT---DPFVGRLTFIRVYAGVLKSGSYV---KNVRKNKKERVSRLVKMHA 358
Query: 268 LDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFA 327
+R EI E +AGD+ A+ G++D GET+T L + EP + + A
Sbjct: 359 QNRNEIDEIRAGDICAVIGLKDTTTGETLTDDKLDVQLEAMQFAEPVISLAVEPKTK--A 416
Query: 328 GREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GY 386
+E + K+ E D + + + + +++G GELHL IL++ M+RE
Sbjct: 417 DQEKMSIALSKLAEE-------DPTFKTFSDPETGQTIIAGMGELHLDILVDRMKREFKV 469
Query: 387 ELQVSRPEVIIKE 399
E+ + P+V +E
Sbjct: 470 EVNIGAPQVSFRE 482
sp|O13430|EF2_CANAL ELONGATION FACTOR 2 (EF-2) >gi|4585664|emb|CAA70857.2| (Y09664)
translation elongation factor 2 [Candida albicans]
Length = 842
Score = 115 bits (286), Expect = 9e-25
Identities = 71/203 (34%), Positives = 111/203 (53%), Gaps = 39/203 (19%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
++RN++VIAHVDHGK+TL D L++++ + A K R MD+ EQERGITI K+TA+
Sbjct: 18 NVRNMSVIAHVDHGKSTLSDSLVQKAGIISAAKAGDARFMDTRKDEQERGITI--KSTAI 75
Query: 70 EY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
N +N++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLYASMTDEDVKDIKQKTDGNSFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTVEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDK--------------PSARPAEVVDEVLELFIEL 157
QT VL++AL + + P+VV+NK+D+ AR E V+ ++ + +
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKVDRALLELQTTKEDLYQTFARTVESVNVIISTYCDP 195
Query: 158 GADDEQLDFP----VVYASAING 176
D Q+ +P V +AS ++G
Sbjct: 196 VLGDVQV-YPQKGTVAFASGLHG 217
sp|Q46306|TETP_CLOPE TETRACYCLINE RESISTANCE PROTEIN TETP (TETB(P))
>gi|1075972|pir||S41522 tetB(P) protein - Clostridium
perfringens >gi|456035 (L20800) TetB(P) [Clostridium
perfringens]
Length = 652
Score = 114 bits (283), Expect = 2e-24
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 22/221 (9%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDA--RKELAERAMDSNALEQERGITILAKNTA 68
I N+ ++AHVD GKTT+ + LL S + + R +L DS LE++RGITI + +
Sbjct: 4 IINIGIVAHVDAGKTTITENLLYYSGAIKSVGRVDLGNTQTDSMELERKRGITIKSSTIS 63
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+N ++NI+DTPGH DF EVER + +DG +LV+ EG QTR + E N+
Sbjct: 64 FNWNNVKVNIIDTPGHVDFISEVERSLNSLDGAILVISGVEGIQSQTRILFDTLKELNIP 123
Query: 129 PIVVVNKIDKPSARPAEVVDEV----------LELFIELGADDEQLDFPVVYASAINGSS 178
I+ VNK+D+ A +V +E+ L+ ++G+ VY + +
Sbjct: 124 TIIFVNKLDRIGANFNKVFEEIKKNMSNKVVRLQEVYDVGS-------KAVYIKKLFDTC 176
Query: 179 SMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSL 219
++D D + ++++ + ++ G ++ E +Q ++SL
Sbjct: 177 IIND---DAINVLSDLDEAFLERYIGGIEPDKEEIQEKLSL 214
gi|4091111 (AF046228) 30 kDa GTP-binding protein LepA [Mycoplasma
hyopneumoniae]
Length = 249
Score = 114 bits (282), Expect = 3e-24
Identities = 58/127 (45%), Positives = 84/127 (65%), Gaps = 1/127 (0%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN A+IAH+DHGK+TL D +L+ + T+ ++++L E+ +DS LE+ERGITI +
Sbjct: 83 IRNFAIIAHIDHGKSTLADRILEFTNTV-SKRDLKEQHLDSMDLEKERGITIKLNAVQIR 141
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
YN +++DTPGH DF EV R + +G +L+VDA +G QT + ALE NL I
Sbjct: 142 YNSYIFHLIDTPGHVDFTYEVSRSLAATEGALLLVDASQGIQAQTLANVYLALENNLEII 201
Query: 131 VVVNKID 137
++NKID
Sbjct: 202 PIINKID 208
gi|849206 (U28373) Etf1p: Elongation factor 2 (Swiss Prot. accession number
P32324). Note that the entire gene is not included in
this cosmid. [Saccharomyces cerevisiae]
Length = 515
Score = 113 bits (281), Expect = 3e-24
Identities = 60/147 (40%), Positives = 89/147 (59%), Gaps = 20/147 (13%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
++RN++VIAHVDHGK+TL D L++++ + A K R D+ EQERGITI K+TA+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITI--KSTAI 75
Query: 70 EY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
N IN++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++AL + + P+VV+NK+D+
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKVDR 162
ref|NP_010673.1|EFT2| translation elongation factor 2 (EF-2); Eft2p
>gi|6324707|ref|NP_014776.1|EFT1| translation elongation
factor 2 (EF-2); Eft1p >gi|416935|sp|P32324|EF2_YEAST
ELONGATION FACTOR 2 (EF-2) >gi|283128|pir||A41778
translation elongation factor eEF-2 - yeast
(Saccharomyces cerevisiae) >gi|171442 (M59370)
translation elongation factor 2 [Saccharomyces
cerevisiae] >gi|549849 (M59369) translation elongation
factor 2 [Saccharomyces cerevisiae] >gi|927318 (U32274)
Eft2p: translation elongation factor 2 (EF-2); CAI: 0.80
[Saccharomyces cerevisiae] >gi|1050821|emb|CAA62116|
(X90518) ORF O3317 [Saccharomyces cerevisiae]
>gi|1164977|emb|CAA64052| (X94335) YOR3317w
[Saccharomyces cerevisiae] >gi|1420342|emb|CAA99332|
(Z75041) ORF YOR133w [Saccharomyces cerevisiae]
Length = 842
Score = 113 bits (281), Expect = 3e-24
Identities = 60/147 (40%), Positives = 89/147 (59%), Gaps = 20/147 (13%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
++RN++VIAHVDHGK+TL D L++++ + A K R D+ EQERGITI K+TA+
Sbjct: 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITI--KSTAI 75
Query: 70 EY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
N IN++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++AL + + P+VV+NK+D+
Sbjct: 136 CVQTETVLRQALGERIKPVVVINKVDR 162
sp|Q06193|EF2_ENTHI ELONGATION FACTOR 2 (EF-2) >gi|158941 (L02417) translation
elongation factor 2 [Entamoeba histolytica]
Length = 840
Score = 113 bits (280), Expect = 4e-24
Identities = 61/161 (37%), Positives = 91/161 (55%), Gaps = 14/161 (8%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN+ VIAHVDHGK+TL D L+ + + K R D+ EQER ITI + +
Sbjct: 16 KSNIRNMCVIAHVDHGKSTLTDSLVTLAGIISNEKAGVARYTDTRPDEQERCITIKSTSI 75
Query: 68 AVEY--------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMP 113
++ Y NG IN++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SMYYEIEDKEDIPADANGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCV 135
Query: 114 QTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELF 154
QT VL++AL + + PIV++NK+D+ E +E + F
Sbjct: 136 QTETVLRQALTERVKPIVIINKVDRVILELKEEPEEAYQSF 176
sp|P80868|EFG_BACSU ELONGATION FACTOR G (EF-G) (VEGETATIVE PROTEIN 19) (VEG19)
>gi|1644223|dbj|BAA11003| (D64127) elongation factor G
[Bacillus subtilis] >gi|2632379|emb|CAB11888| (Z99104)
elongation factor G [Bacillus subtilis]
Length = 692
Score = 111 bits (276), Expect = 1e-23
Identities = 68/179 (37%), Positives = 97/179 (53%), Gaps = 5/179 (2%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E RN+ ++AH+D GKTT + +L + + E E A MD EQERGITI +
Sbjct: 8 EKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETHEGASQMDWMEQEQERGITITSAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T ++ G R+NI+DTPGH DF EVER ++++DG V V+DA G PQT V ++A
Sbjct: 68 TTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYG 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+ IV VNK+DK A+ + V L L A+ + P+ G + +N A
Sbjct: 128 VPRIVFVNKMDKIG---ADFLYSVGTLRDRLQANAHAIQLPIGAEDNFEGIIDLVENVA 183
Score = 62.8 bits (150), Expect = 8e-09
Identities = 60/280 (21%), Positives = 107/280 (37%), Gaps = 37/280 (13%)
Query: 145 EVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMAN-----IFDTII 199
E V E+ E ++ + E+L + A G+ ++ P N + D ++
Sbjct: 216 EAVCELDEELMDKYLEGEELTIDELKAGIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVL 275
Query: 200 DHIPGPVD-------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIK 240
D++P P D + +EP + + Y T+
Sbjct: 276 DYLPAPTDVAAIKGTRPDTNEEIERHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTLD 335
Query: 241 VGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSD 300
G V K K RV ++ R+EI AGD+ A G++D G+T+
Sbjct: 336 SGSYV---KNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTTTGDTLCDEK 392
Query: 301 HVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTES 360
+ L + EP + + + A ++ + K+ E D + R +
Sbjct: 393 DLVILESMEFPEPVIDVAIEPKSK--ADQDKMGIALAKLAEE-------DPTFRTQTNPE 443
Query: 361 PDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL I+++ M+RE E V P+V +E
Sbjct: 444 TGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRE 483
Score = 50.8 bits (119), Expect = 3e-05
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+ + + V EP +V++ PEEY G I+ ++ R+G + M+ GN Q + +VP +
Sbjct: 592 VSKCNPVLLEPIMKVEVVIPEEYMGDIMGDITSRRGRVEGMEARGNAQV-VRAMVPLAEM 650
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIGGRHRGSLISMDSGQ 503
G+ T S T+G G D Y GE+ +I + G+
Sbjct: 651 FGYATALRSNTQGRGTFTMHMDHY-----GEVPKSVAEEIIKKNKGE 692
sp|P15112|EF2_DICDI ELONGATION FACTOR 2 (EF-2) >gi|102232|pir||A34347 translation
elongation factor eEF-2 - slime mold (Dictyostelium
discoideum) >gi|167788 (M26017) elongation factor 2
[Dictyostelium discoideum]
Length = 830
Score = 111 bits (276), Expect = 1e-23
Identities = 56/145 (38%), Positives = 89/145 (60%), Gaps = 14/145 (9%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
RE+IRN++VIAHVDHGKTTL D L++++ + + R M A EQERGITI + +
Sbjct: 16 RENIRNMSVIAHVDHGKTTLSDSLIQRAGIIADKVSGDMRYMSCRADEQERGITIKSSSV 75
Query: 68 AVEYNGTR--------------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMP 113
++ + + IN++D+PGH DF EV +++ DG ++V+D EG
Sbjct: 76 SLHFEMPKEDKLPAGCTSHEFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVEGVCV 135
Query: 114 QTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++A+ + + P++ VNK+D+
Sbjct: 136 QTETVLRQAVAERIKPVLFVNKVDR 160
emb|CAB04216.1| (Z81519) predicted using Genefinder; similar to Elongation factor
Tu family (contains ATP/GTP binding P-loop), Elongation
factor G C-terminus; cDNA EST yk240a3.3 comes from this
gene; cDNA EST yk371c7.3 comes from this gene; ...
Length = 750
Score = 111 bits (275), Expect = 2e-23
Identities = 59/145 (40%), Positives = 89/145 (60%), Gaps = 5/145 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITIL 63
E IRN+ + AH+D GKTT+ + +L + +D+ E+ + MD LE++RGITI
Sbjct: 42 ERIRNIGISAHIDSGKTTVTERILYYAGRIDSMHEVRGKDDVGATMDFMDLERQRGITIQ 101
Query: 64 AKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ T V+++GT INI+DTPGH DF EVER ++++DG VLV+ G QT V ++
Sbjct: 102 SAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVLCGVGGVQSQTFTVNRQLA 161
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVD 148
N+ I VNK+D+ A P + +D
Sbjct: 162 RYNVPFICFVNKMDRNGATPLKALD 186
Score = 59.7 bits (142), Expect = 7e-08
Identities = 60/203 (29%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 202 IPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTK 261
I P N+D+P L+ Y K GD+V S+ DG + RV +
Sbjct: 339 ILSPKRNNDKPFVGLAFKLEAGKYGQLTYFRVYQGQLSK-GDTVYASR-DG--RKVRVQR 394
Query: 262 LFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP-LPILHIDEPTLQMTFL 320
L D +EI A AGD+ A G+ D GET + ++ P +HI EP + M
Sbjct: 395 LVRMHAADMEEITTAYAGDICATFGL-DCHSGETFSTDQNLAPHCESMHIPEPVISMAIK 453
Query: 321 ANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIET 380
N A K +T R E D + R E + + +VSG GELHL I +
Sbjct: 454 PVNRKDADNFIKALT------RFTKE---DPTFRREYNQEAKETIVSGMGELHLEIYAQR 504
Query: 381 MRRE-GYELQVSRPEVIIKEIDG 402
M+ E +++ +P V +E G
Sbjct: 505 MKSEYNCPVELGKPTVAYRECLG 527
Score = 48.4 bits (113), Expect = 2e-04
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 371 ELHLSILIETMRREGYELQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSER 430
E+ + ++ M RE +E + + + EP +V+ P E+QG+++ +L++R
Sbjct: 620 EIAMINTMQNMMRESFE-----------KANWLLLEPIMKVEATVPTEFQGNVVTSLTQR 668
Query: 431 KGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLP 482
+ T G A +I P + G+T+E S+T G G + + +Y P
Sbjct: 669 NALITTTDST-EGYATVICEAPLSDMFGYTSELRSLTEGKGEFSMEYSRYAP 719
sp|P81683|EFG_STAAU ELONGATION FACTOR G (EF-G) (85 KD VITRONECTIN BINDING PROTEIN)
>gi|4582216|emb|CAB40191.1| (AJ237696) elongation factor
G (EF-G) [Staphylococcus aureus]
Length = 693
Score = 111 bits (274), Expect = 2e-23
Identities = 75/215 (34%), Positives = 110/215 (50%), Gaps = 8/215 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E RN+ ++AH+D GKTT + +L + + E E A MD EQ+RGITI +
Sbjct: 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T + G R+NI+DTPGH DF EVER ++++DG V V+DA G PQT V ++A
Sbjct: 68 TTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYG 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
+ IV VNK+DK A V L L A+ + P+ A + ++ D
Sbjct: 128 VPRIVFVNKMDKLG---ANFEYSVSTLHDRLQANAAPIQLPI---GAEDEFEAIIDLVEM 181
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
+ N T I+ I P D+ D + + SL++
Sbjct: 182 KCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIE 216
Score = 58.9 bits (140), Expect = 1e-07
Identities = 60/282 (21%), Positives = 109/282 (38%), Gaps = 42/282 (14%)
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP-----ADQEHTMANIFDTI 198
AE DE++E ++ DE++ + + ++++ P A + + + D +
Sbjct: 219 AETSDELMEKYL----GDEEISVSELKEAIRQATTNVEFYPVLCGTAFKNKGVQLMLDAV 274
Query: 199 IDHIPGPVD------------------NSDEPLQFQVSLLDY--NDYXXXXXXXXXXXXT 238
ID++P P+D +D+ +F + Y T
Sbjct: 275 IDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFKVMTDPYVGKLTFFRVYSGT 334
Query: 239 IKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTP 298
+ G V K K RV +L RQEI +GD+ A G++D G+T+
Sbjct: 335 MTSGSYV---KNSTKGKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCG 391
Query: 299 SDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENT 358
+ L + EP + ++ + K+ + LV + D +
Sbjct: 392 EKNDIILESMEFPEPVIHLSVEPKSK---------ADQDKMTQALVKLQEEDPTFHAHTD 442
Query: 359 ESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E + ++ G GELHL IL++ M++E E V P V +E
Sbjct: 443 EETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMVSYRE 484
Score = 54.7 bits (129), Expect = 2e-06
Identities = 31/88 (35%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI 457
K+ D V EP +V I+ PEEY G I+ ++ R+G + M+ GN Q + VP +
Sbjct: 594 KKCDPVILEPMMKVTIEMPEEYMGDIMGDVTSRRGRVDGMEPRGNAQVVNAY-VPLSEMF 652
Query: 458 GFTTEFMSMTRGYGIMNHTFDQYLPAVK 485
G+ T S T+G G FD Y K
Sbjct: 653 GYATSLRSNTQGRGTYTMYFDHYAEVPK 680
sp|P28996|EF2_CHLKE ELONGATION FACTOR 2 (EF-2) >gi|421771|pir||S32819 translation
elongation factor eEF-2 - Chlorella kessleri >gi|167245
(M68064) elongation factor 2 [Chlorella kessleri]
>gi|228693|prf||1808323A elongation factor 2 [Chlorella
kessleri]
Length = 845
Score = 111 bits (274), Expect = 2e-23
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 16/151 (10%)
Query: 4 LTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITIL 63
L + + +IRN++VIAHVDHGK+TL D L+ + + + +R D+ A EQERGITI
Sbjct: 12 LMEYQNNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAFEQAGDQRLTDTRADEQERGITIK 71
Query: 64 AKNTAVEY----------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDA 107
+ ++ Y N IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 72 STGISLYYQMTDEQLKGFTGERQGNDFLINLIDSPGHVDFSSEVTAALRITDGALVVVDC 131
Query: 108 YEGTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
EG QT VL++AL + + P++ +NKID+
Sbjct: 132 IEGVCVQTETVLRQALGERIRPVLTINKIDR 162
gi|2687964 (AE001121) GTP-binding membrane protein (lepA) [Borrelia
burgdorferi]
Length = 559
Score = 110 bits (273), Expect = 3e-23
Identities = 112/466 (24%), Positives = 193/466 (41%), Gaps = 64/466 (13%)
Query: 49 MDSNALEQERGITILAKNTAVEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVL 103
+DS +E+ERGITI ++ + Y +N +DTPGH DF EV R + +G +L
Sbjct: 2 LDSMDIERERGITIKSQAVTITYKSNDGDFYELNFVDTPGHVDFSYEVSRAISSCEGALL 61
Query: 104 VVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQ 163
++DA +G QT A E +L I V+NKID P+A V ++ +LG ++E
Sbjct: 62 LIDASQGIQAQTVSNFYMAFEHDLEIIPVINKIDLPNANVDFVKKQIKN---DLGLNEE- 117
Query: 164 LDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYN 223
+ SA NG + ++ + I ++P P + +PL+ + Y+
Sbjct: 118 ---IAISISAKNGIG------------IDDLLEAICKYVPSPRGSIKDPLRALIFDSHYD 162
Query: 224 DYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD--- 280
Y IK+GD + L T + + + G F + + +AGD
Sbjct: 163 SYRGVVVHFRIFEGQIKMGDKIRLM----HTNSEHLIEEIGIFKISLERKDTLEAGDVGY 218
Query: 281 -LIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKV 339
+ + + D+ +G+TVT D P L E ++ + +S + ++ K
Sbjct: 219 FIAGIKNISDVKIGDTVTLCD----FPALSPLEGFKEVKPVVFSSVYPVDANQYDDLLKA 274
Query: 340 EERLVSELQTDVSLRVENTESP---DKWVVSGRGELHLSILIETMRRE-GYELQVSRPEV 395
+RL D SL E S + G LHL ++ E + RE + ++ P V
Sbjct: 275 MDRL---KLNDASLTFEKDSSSALGHGFKCGFLGLLHLEVIQERIEREFNLNVILTSPSV 331
Query: 396 IIK--------------------EIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDML 435
K E EP+ + I P E+ G+I+ ++G
Sbjct: 332 RYKIIPKKGESYFIETPEQFPGNEAIESVLEPYIKANIIVPTEFLGNIMSVCLLKRGVQT 391
Query: 436 DMQITGNGQARLIFLVP-ARGLIGFTTEFMSMTRGYGIMNHTFDQY 480
++ + LI+ +P + L F + S++RGY ++ Y
Sbjct: 392 NLIYLDTKRVELIYKMPLSEILFDFYDKIKSVSRGYASFDYELLDY 437
sp|Q9Z9L7|EFG_BACHD ELONGATION FACTOR G (EF-G) >gi|4512401|dbj|BAA75268.1| (AB017508)
fus homologue (identity of 87% to B. subtilis )
[Bacillus halodurans]
Length = 692
Score = 109 bits (271), Expect = 5e-23
Identities = 63/162 (38%), Positives = 91/162 (55%), Gaps = 5/162 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E+ RN+ ++AH+D GKTT + +L + + E E A MD EQERGITI +
Sbjct: 8 ENTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETHEGASQMDWMEQEQERGITITSAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T ++ RINI+DTPGH DF EVER ++++DG V V+DA G P T V ++A
Sbjct: 68 TTAQWKNNRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPHTETVWRQATTYG 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
+ +V VNK+DK A+ + V L L A+ + P+
Sbjct: 128 VPRVVFVNKMDKTG---ADFLYSVSTLHDRLQANAHPIQLPI 166
Score = 61.3 bits (146), Expect = 2e-08
Identities = 68/333 (20%), Positives = 130/333 (38%), Gaps = 47/333 (14%)
Query: 92 ERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVL 151
E I+ +VD V + GT + + + + EQ +K AE+ +E++
Sbjct: 173 EGIIDLVDMVAYFYEDDLGTRTEAKEIPDEYKEQ------AQEYHEKLVEAAAELDEELM 226
Query: 152 ELFIELGADDEQLDFPVVYASAINGSSSMSDNP-----ADQEHTMANIFDTIIDHIPGPV 206
++E E+L + A+ G+ ++ P A + + + D ++D++P P+
Sbjct: 227 MKYLE----GEELTKDELKAAIRKGTCNVEFYPVLCGSAFKNKGVQLMLDAVLDYLPSPL 282
Query: 207 D-------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
D D+P + + Y T+ G V
Sbjct: 283 DVPAIKGHVPDTEEEAVRKPGDDQPFAALAFKVMTDPYVGKLTFFRVYSGTLDSGSYVKN 342
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPI 307
S D K RV ++ R+EI +GD+ A G++D G+T+ ++ L
Sbjct: 343 STKD---KRERVGRILQMHANHREEISTVYSGDIAAAVGLKDTSTGDTLCDEKNLVILES 399
Query: 308 LHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVS 367
+ EP + ++ + K+ L + D + + E + +++
Sbjct: 400 MEFPEPVIHLSVEPKSK---------ADQDKMGLALAKLAEEDPTFKTHTDEETGQTIIA 450
Query: 368 GRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
G GELHL I+++ +RRE E V P+V +E
Sbjct: 451 GMGELHLDIIVDRLRREFKVEANVGAPQVSYRE 483
Score = 53.1 bits (125), Expect = 6e-06
Identities = 27/78 (34%), Positives = 40/78 (50%), Gaps = 1/78 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP +V++ PEEY G ++ ++ R+G + M+ GN Q F VP + G+ T
Sbjct: 598 VLLEPMMKVEVVVPEEYMGDVMGDITSRRGRVEGMEARGNAQVVKAF-VPLAEMFGYATS 656
Query: 463 FMSMTRGYGIMNHTFDQY 480
S T+G G FD Y
Sbjct: 657 LRSRTQGRGTYTMFFDHY 674
sp|P13551|EFG_THETH ELONGATION FACTOR G (EF-G) >gi|72881|pir||EFTWG translation
elongation factor G - Thermus aquaticus
>gi|1633250|pdb|1DAR| Elongation Factor G In Complex
With Gdp >gi|1827912|pdb|1ELO| Elongation Factor G
Without Nucleotide >gi|48240|emb|CAA34354| (X16278)
elongation factor G (AA 1-691) [Thermus thermophilus]
Length = 691
Score = 109 bits (271), Expect = 5e-23
Identities = 72/213 (33%), Positives = 111/213 (51%), Gaps = 8/213 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
+RN+ + AH+D GKTT + +L + + E+ E A MD E+ERGITI A T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ RINI+DTPGH DF EVER M+++DG ++V D+ +G PQ+ V ++A + +
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
I NK+DK A V+ + E LGA + P+ +G + D +
Sbjct: 132 RIAFANKMDKTGADLWLVIRTMQE---RLGARPVVMQLPIGREDTFSG---IIDVLRMKA 185
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
+T N T I IP P + D+ ++ L++
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDQAREYHEKLVE 218
Score = 64.8 bits (155), Expect = 2e-09
Identities = 88/396 (22%), Positives = 152/396 (38%), Gaps = 57/396 (14%)
Query: 34 QSQTL--DARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINILDTP-GHAD-FGG 89
QS+T+ A K R +N +++ L T E G R ++ P G D F G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 90 --EVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDK----PSARP 143
+V R+ G L D E +P+ L +A E + + V D+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEE--YLDQAREYHEKLVEVAADFDENIMLKYLEG 234
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIP 203
E +E L I G D ++ PV SA+ + + D ++D++P
Sbjct: 235 EEPTEEELVAAIRKGTIDLKIT-PVFLGSALKNKG------------VQLLLDAVVDYLP 281
Query: 204 GPVD------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
P+D + + PL + + Y T+ G V
Sbjct: 282 SPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP- 304
+ + RV +L R+E++E KAGDL A+ G+++ G+T+ D
Sbjct: 342 YNTT---KGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI 398
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
L + + EP + + K+ + L + D + RV +
Sbjct: 399 LESIEVPEPVIDVAIEPKTK---------ADQEKLSQALARLAEEDPTFRVSTHPETGQT 449
Query: 365 VVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
++SG GELHL I+++ ++RE + V +P+V +E
Sbjct: 450 IISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Score = 62.8 bits (150), Expect = 8e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+++ D V EP RV++ TPEEY G +I L+ R+G +L M+ GN Q F VP +
Sbjct: 594 VQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM 652
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ S T+G G FD Y
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
pdb|1EFG|A Thermus thermophilus >gi|3745823|pdb|2EFG|A Chain A, Translational
Elongation Factor G Complexed With Gdp
Length = 691
Score = 109 bits (269), Expect = 8e-23
Identities = 72/213 (33%), Positives = 110/213 (50%), Gaps = 8/213 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
+RN+ + AH+D GKTT + +L + + E+ E A MD E+ERGITI A T
Sbjct: 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTT 71
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ RINI+DTPGH DF EVER M+++DG ++V D+ +G PQ+ V ++A + +
Sbjct: 72 CFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP 131
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
I NK+DK A V+ + E LGA + P+ +G + D +
Sbjct: 132 RIAFANKMDKTGADLWLVIRTMQE---RLGARPVVMQLPIGREDTFSG---IIDVLRMKA 185
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
+T N T I IP P + D ++ L++
Sbjct: 186 YTYGNDLGTDIREIPIPEEYLDNAREYHEKLVE 218
Score = 64.4 bits (154), Expect = 3e-09
Identities = 88/396 (22%), Positives = 151/396 (37%), Gaps = 57/396 (14%)
Query: 34 QSQTL--DARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINILDTP-GHAD-FGG 89
QS+T+ A K R +N +++ L T E G R ++ P G D F G
Sbjct: 117 QSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSG 176
Query: 90 --EVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDK----PSARP 143
+V R+ G L D E +P+ L A E + + V D+
Sbjct: 177 IIDVLRMKAYTYGNDLGTDIREIPIPEE--YLDNAREYHEKLVEVAADFDENIMLKYLEG 234
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIP 203
E +E L I G D ++ PV SA+ + + D ++D++P
Sbjct: 235 EEPTEEELVAAIRKGTIDLKIT-PVFLGSALKNKG------------VQLLLDAVVDYLP 281
Query: 204 GPVD------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
P+D + + PL + + Y T+ G V
Sbjct: 282 SPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYV 341
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP- 304
+ + RV +L R+E++E KAGDL A+ G+++ G+T+ D
Sbjct: 342 YNTT---KGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPRVI 398
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
L + + EP + + K+ + L + D + RV +
Sbjct: 399 LESIEVPEPVIDVAIEPKTK---------ADQEKLSQALARLAEEDPTFRVSTHPETGQT 449
Query: 365 VVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
++SG GELHL I+++ ++RE + V +P+V +E
Sbjct: 450 IISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRE 485
Score = 62.8 bits (150), Expect = 8e-09
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+++ D V EP RV++ TPEEY G +I L+ R+G +L M+ GN Q F VP +
Sbjct: 594 VQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAF-VPLAEM 652
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ S T+G G FD Y
Sbjct: 653 FGYATDLRSKTQGRGSFVMFFDHY 676
sp|P73473|RF3_SYNY3 PEPTIDE CHAIN RELEASE FACTOR 3 (RF-3) >gi|1652592|dbj|BAA17513|
(D90906) peptide-chain-release factor 3 [Synechocystis
sp.]
Length = 547
Score = 108 bits (267), Expect = 1e-22
Identities = 57/163 (34%), Positives = 95/163 (57%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELL------KQSQTLDARKELAERAMDSNALEQERGITILAK 65
RN A+I+H D GKTTL ++LL +++ + AR+ D A+EQ+RGI+I +
Sbjct: 27 RNFAIISHPDAGKTTLTEKLLLYGGAIQEAGAVKARRSQRSATSDWMAMEQQRGISITST 86
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+Y G +N+LDTPGH DF + R + D V+++DA +G QTR + + +
Sbjct: 87 VLQFDYRGKILNLLDTPGHQDFSEDTYRTLAAADNAVMLIDAAKGLETQTRKLFEVCRLR 146
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
+L +NK+D+PS P E++DE+ + ELG + +++P+
Sbjct: 147 HLPIFTFINKLDRPSLTPLELMDEIEQ---ELGMNTYAVNYPI 186
sp|O30913|EFG1_BORBU ELONGATION FACTOR G 1 (EF-G 1) >gi|2688449 (AE001155) translation
elongation factor G (fus-1) [Borrelia burgdorferi]
Length = 693
Score = 108 bits (266), Expect = 2e-22
Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITILAK 65
+RN+ + AH+D GKTTL + +L + A E+ + MDS LE+ERGITI +
Sbjct: 6 LRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASA 65
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
T VE+ INI+DTPGH DF EVER ++++DG +LV+D+ G Q+ V ++
Sbjct: 66 ATHVEWKDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRY 125
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEV 150
++ + VNK DK A P V D++
Sbjct: 126 SVPRLAFVNKCDKTGANPYNVKDQL 150
Score = 47.3 bits (110), Expect = 4e-04
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 11/148 (7%)
Query: 253 STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDE 312
++K F+V +L + ++I+ +GD++AL G+E G+T + + I +
Sbjct: 343 TSKKFKVGRLIRMHANNTEDIEFGGSGDIVALFGIE-CASGDTFCDPSINYSMTSMFIPD 401
Query: 313 PTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGEL 372
P + ++ + A K R +E + D+ E+ E+ ++ G GEL
Sbjct: 402 PVISLSVKPKDKKSADNMAK-ALGRFTKEDPTFKTYVDI----ESNET----IIQGMGEL 452
Query: 373 HLSILIETMRRE-GYELQVSRPEVIIKE 399
HL + IE M+RE E++ P+V +E
Sbjct: 453 HLEVYIERMKREFKAEVETGMPQVAYRE 480
gi|2460295 (AF021260) elongation factor G homolog [Borrelia burgdorferi]
Length = 693
Score = 108 bits (266), Expect = 2e-22
Identities = 58/145 (40%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITILAK 65
+RN+ + AH+D GKTTL + +L + A E+ + MDS LE+ERGITI +
Sbjct: 6 LRNIGISAHIDSGKTTLTERILFYCNKIHAIHEVKGKDGVGATMDSMELERERGITIASA 65
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
T VE+ INI+DTPGH DF EVER ++++DG +LV+D+ G Q+ V ++
Sbjct: 66 ATHVEWKDFPINIIDTPGHVDFTIEVERSLRVLDGAILVLDSVAGVQSQSITVDRQLKRY 125
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEV 150
++ + VNK DK A P V D++
Sbjct: 126 SVPRLAFVNKCDKTGANPYNVKDQL 150
Score = 49.2 bits (115), Expect = 1e-04
Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
T+K G + S+ ++K F+V +L + ++I+ +GD++AL G+E G+T
Sbjct: 331 TLKKGQELINSR---TSKKFKVGRLIRMHANNTEDIEFGGSGDIVALFGIE-CASGDTFC 386
Query: 298 PSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVEN 357
+ + I +P + ++ + A K R +E + D+ E+
Sbjct: 387 DPSINYSMTSMFIPDPVISLSVKPKDKKSADNMAK-ALGRFTKEDPTFKTYVDI----ES 441
Query: 358 TESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E+ ++ G GELHL + IE M+RE E++ P+V +E
Sbjct: 442 NET----IIQGMGELHLEVYIERMKREFKAEVETGMPQVAYRE 480
sp|Q9Z802|EFG_CHLPN ELONGATION FACTOR G (EF-G) >gi|4376841|gb|AAD18690| (AE001639)
Elongation Factor G [Chlamydia pneumoniae]
Length = 694
Score = 107 bits (264), Expect = 3e-22
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKNTA 68
IRN+ ++AH+D GKTT + +L + E+ E MD A EQERGITI + T
Sbjct: 11 IRNIGIMAHIDAGKTTTTERILFYAGRTHKIGEVHEGGATMDWMAQEQERGITITSAATT 70
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
V + G +INI+DTPGH DF EVER ++++DG V V DA G PQ+ V ++A + +
Sbjct: 71 VFWLGAKINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVP 130
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
I VNK+D+ A V+ + E +LGA+ + P+
Sbjct: 131 RIAFVNKMDRMGADYFAAVESMKE---KLGANAFPVHCPI 167
Score = 58.2 bits (138), Expect = 2e-07
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
T+K G ++ S D K R+++L +R + E GD+ A G++ G+T+
Sbjct: 339 TLKKGSAILNSTKD---KKERISRLLEMHANERTDRDEFTVGDIGACVGLKFSVTGDTLC 395
Query: 298 PSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVEN 357
+ L + +P + M + RE K+ + L S + D + RV
Sbjct: 396 DDNQEIVLERIEFPDPVIDMAIEPKSK--GDRE-------KLAQALSSLSEEDPTFRVST 446
Query: 358 TESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E + ++SG GELHL IL + M RE E V +P+V KE
Sbjct: 447 NEETGQTIISGMGELHLDILRDRMIREFKVEANVGKPQVSYKE 489
Score = 44.9 bits (104), Expect = 0.002
Identities = 24/67 (35%), Positives = 38/67 (55%), Gaps = 1/67 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP +V + TPE++ G +I L+ R+G +L Q + G A++ VP + G+TT
Sbjct: 604 VILEPIMKVAVITPEDHLGDVIGDLNRRRGKILG-QESSRGMAQVNAEVPLSEMFGYTTS 662
Query: 463 FMSMTRG 469
S+T G
Sbjct: 663 LRSLTSG 669
gi|1916016 (U73497) tetracycline resistance protein [Prevotella intermedia]
Length = 670
Score = 107 bits (264), Expect = 3e-22
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 7 LREDIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILA 64
++ +I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A
Sbjct: 15 IQMNIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRA 74
Query: 65 KNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
T++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + +
Sbjct: 75 STTSIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQK 134
Query: 125 QNLTPIVVVNKIDK 138
+ I+ +NKID+
Sbjct: 135 LQIPTIIFINKIDR 148
emb|CAA69906| (Y08615) TetA(Q)3 protein [Bacteroides fragilis]
Length = 657
Score = 107 bits (264), Expect = 3e-22
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 7 LREDIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILA 64
++ +I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A
Sbjct: 15 IQMNIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRA 74
Query: 65 KNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
T++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + +
Sbjct: 75 STTSIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFSTLQK 134
Query: 125 QNLTPIVVVNKIDK 138
+ I+ +NKID+
Sbjct: 135 LQIPTIIFINKIDR 148
pir||I40188 tetracycline resistance protein tetQ - Bacteroides fragilis
>gi|580768|emb|CAA79727| (Z21523) TetA(Q)2 protein
[Bacteroides fragilis]
Length = 657
Score = 107 bits (264), Expect = 3e-22
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 7 LREDIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILA 64
++ +I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A
Sbjct: 15 IQMNIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRA 74
Query: 65 KNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
T++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + +
Sbjct: 75 STTSIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQK 134
Query: 125 QNLTPIVVVNKIDK 138
+ I+ +NKID+
Sbjct: 135 LQIPTIIFINKIDR 148
sp|O05197|TETQ_PREIN TETRACYCLINE RESISTANCE PROTEIN TETQ (TET(Q))
Length = 654
Score = 106 bits (263), Expect = 4e-22
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNT 67
+I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A T
Sbjct: 2 NIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRASTT 61
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + + +
Sbjct: 62 SIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQKLQI 121
Query: 128 TPIVVVNKIDK 138
I+ +NKID+
Sbjct: 122 PTIIFINKIDR 132
emb|CAA69907| (Y08615) TetA(Q)3 protein [Bacteroides fragilis]
Length = 641
Score = 106 bits (263), Expect = 4e-22
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNT 67
+I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A T
Sbjct: 2 NIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRASTT 61
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + + +
Sbjct: 62 SIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFSTLQKLQI 121
Query: 128 TPIVVVNKIDK 138
I+ +NKID+
Sbjct: 122 PTIIFINKIDR 132
gi|777751 (L41667) lepA [Photobacterium sp.] >gi|780321 (L41688) lepA
[Photobacterium sp.]
Length = 137
Score = 106 bits (263), Expect = 4e-22
Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 6/135 (4%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN ++IAH+DHGK+TL D L++ L R E++ + +DS LE+ERGITI A++ ++
Sbjct: 4 IRNFSIIAHIDHGKSTLSDRLIQVCGGLSNR-EMSAQVLDSMDLERERGITIKAQSVTLD 62
Query: 71 YNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
Y ++N +DTPGH DF EV R + +G +LVVDA +G QT A+E
Sbjct: 63 YTAKDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM 122
Query: 126 NLTPIVVVNKIDKPS 140
+L + ++NKID P+
Sbjct: 123 DLEVVPILNKIDLPA 137
sp|Q08425|TETQ_BACFR TETRACYCLINE RESISTANCE PROTEIN TETQ (TETA(Q)2)
>gi|2126417|pir||I40189 tetA(Q)2 protein - Bacteroides
fragilis >gi|394760|emb|CAA79728| (Z21523) TetA(Q)2
protein [Bacteroides fragilis]
Length = 641
Score = 106 bits (263), Expect = 4e-22
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNT 67
+I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A T
Sbjct: 2 NIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRASTT 61
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + + +
Sbjct: 62 SIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQKLQI 121
Query: 128 TPIVVVNKIDK 138
I+ +NKID+
Sbjct: 122 PTIIFINKIDR 132
sp|Q52360|TETQ_PRERU TETRACYCLINE RESISTANCE PROTEIN TETQ (TET(Q)) >gi|499665 (L33696)
tetQ [Prevotella ruminicola]
Length = 641
Score = 106 bits (263), Expect = 4e-22
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNT 67
+I N+ ++AH+D GKT++ + LL S + R + + DS +E+ RGIT+ A T
Sbjct: 2 NIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRASTT 61
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + + +
Sbjct: 62 SIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFSTLQKLQI 121
Query: 128 TPIVVVNKIDK 138
I+ +NKID+
Sbjct: 122 PTIIFINKIDR 132
sp|P41084|EFG_RICPR ELONGATION FACTOR G (EF-G) >gi|3860700|emb|CAA14601| (AJ235270)
ELONGATION FACTOR G (fusA) [Rickettsia prowazekii]
Length = 699
Score = 106 bits (261), Expect = 7e-22
Identities = 76/226 (33%), Positives = 111/226 (48%), Gaps = 14/226 (6%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQER 58
M K+ KL E IRN+ + AH+D GKTT + +L + E+ E MD EQER
Sbjct: 1 MSKINKL-EQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQER 59
Query: 59 GITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFV 118
GITI + T + INI+DTPGH DF EVER ++++DG V V D G PQ+ V
Sbjct: 60 GITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETV 119
Query: 119 LKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSS 178
++A + N+ + VNK+D+ A V+ + + LGA + P+ G
Sbjct: 120 WRQADKYNVPRMCFVNKMDRMGADFYRCVEMIKD---RLGARSLIIQLPIGIEENFKGIV 176
Query: 179 SMSDNPA---DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
++ A E A F+ I P D D+ +++ LLD
Sbjct: 177 NLIKMKAVIWKDESLGAEYFEEDI-----PADMQDKAAEYRARLLD 217
Score = 81.9 bits (199), Expect = 1e-14
Identities = 68/283 (24%), Positives = 125/283 (44%), Gaps = 45/283 (15%)
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIP 203
AE+ +E +++ I G + + +P++ SA + + D I+D +P
Sbjct: 234 AEITEEQIKILIRKGTIEARF-YPILCGSAFKNKG------------VQPLLDAIVDFLP 280
Query: 204 GPVD---------NSDEPLQFQVSLLD---------YND-YXXXXXXXXXXXXTIKVGDS 244
P+D ++ E F +S+++ ND + I G +
Sbjct: 281 SPIDIGIVKGIEVSTSEEKDFPISIVEPFSALAFKIMNDPFVGSLTFIRIYSGKITSGAT 340
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP 304
V + K ++ ++ +R++I+EA AGD++AL+G++D G+T++ D
Sbjct: 341 VINTV---KNKREKIGRMLLMHANNREDIKEASAGDIVALAGLKDTSTGDTLSDIDKQVV 397
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
L + EP +++ ++ + G ++ RL +E D S RV +
Sbjct: 398 LERMEFPEPVIELAVEPKSTADQEKMGLALS------RLAAE---DPSFRVSTDHETGQT 448
Query: 365 VVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACE 406
V+ G GELHL I+I+ MRRE E + P+V +E ACE
Sbjct: 449 VIKGMGELHLEIIIDRMRREFKVEANIGAPQVAYRETITTACE 491
Score = 46.9 bits (109), Expect = 5e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP +V++ TP+EY G II L+ R+G + +M GN Q + VP + G+ S
Sbjct: 611 EPIMKVEVITPDEYMGDIIGDLNSRRGQIQNMDPRGNAQV-VTAHVPLAEMFGYVNTLRS 669
Query: 466 MTRGYGIMNHTFDQY 480
+++G + F Y
Sbjct: 670 LSQGRAQFSMIFSHY 684
sp|O83464|EFG1_TREPA ELONGATION FACTOR G 1 (EF-G 1) >gi|3322737 (AE001222) translation
elongation factor G (fusA-1) [Treponema pallidum]
Length = 683
Score = 106 bits (261), Expect = 7e-22
Identities = 63/171 (36%), Positives = 95/171 (54%), Gaps = 5/171 (2%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAK 65
++ +RN+ ++AHVD GKTT + +L + + E+ + A MD EQERGITI +
Sbjct: 3 QQQMRNIGIMAHVDAGKTTTTERMLFYTGKIHRMGEIDDGATTMDWMVQEQERGITIQSA 62
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
T V + I I+DTPGH DF EVER ++++DGVV+V+ A PQT V +A
Sbjct: 63 ATTVRWREVDITIIDTPGHVDFTAEVERALRVLDGVVVVLCAVGRVQPQTETVWYQADRY 122
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING 176
++ + VNK+D+ A V+D+V F G D L P+ ++ G
Sbjct: 123 DIPRVCFVNKMDRIGADFFSVLDQVHNKF---GIDAVALQIPIGSGTSFEG 170
Score = 54.3 bits (128), Expect = 3e-06
Identities = 54/260 (20%), Positives = 102/260 (38%), Gaps = 35/260 (13%)
Query: 194 IFDTIIDHIPGPVDN-------------------SDEPLQFQVSLLDYNDYXXXXXXXXX 234
+ D +++++P P + ++ PL V + Y
Sbjct: 267 LLDAVVEYLPAPQERKAVEGFHVQKKEPVFIAPTAEGPLLALVFKIQYEREAGLLCYVRM 326
Query: 235 XXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGE 294
++ GDS+ G K RV ++ + ++ +AGD+ + G++ G+
Sbjct: 327 YSGKLRTGDSIVNI---GKKKRERVYRILRMHSNKSETVECIQAGDIAVIVGLKSAQTGD 383
Query: 295 TVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSR-KVEERLVSELQTDVSL 353
+V L +H EP + ++ E +SR K++E L + D +
Sbjct: 384 SVGDGSCPVVLESMHFPEPVISVSL----------EPMDASSRDKLQETLGILSREDPTF 433
Query: 354 RVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACEPFERVQ 412
V + ++SG GELHL +L MR + +++V +P V +E E RVQ
Sbjct: 434 SVREDAETGQLLISGMGELHLDVLTTRMREDFNVQVRVGKPHVTYRESIRKTVERTLRVQ 493
Query: 413 -IDTPEEYQGSIIQALSERK 431
+ +EY + + RK
Sbjct: 494 RVIGGKEYMAGLTLRVEARK 513
emb|CAA90884| (Z54171) elongation factor EF-G [Rickettsia prowazekii]
Length = 699
Score = 106 bits (261), Expect = 7e-22
Identities = 76/226 (33%), Positives = 111/226 (48%), Gaps = 14/226 (6%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQER 58
M K+ KL E IRN+ + AH+D GKTT + +L + E+ E MD EQER
Sbjct: 1 MSKINKL-EQIRNIGICAHIDAGKTTTTERILYYTGKSHKIGEVHEGGATMDWMEQEQER 59
Query: 59 GITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFV 118
GITI + T + INI+DTPGH DF EVER ++++DG V V D G PQ+ V
Sbjct: 60 GITITSAATTCRWQDKVINIIDTPGHVDFTIEVERSLRVLDGAVAVFDGVAGVEPQSETV 119
Query: 119 LKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSS 178
++A + N+ + VNK+D+ A V+ + + LGA + P+ G
Sbjct: 120 WRQADKYNVPRMCFVNKMDRMGADFYRCVEMIKD---RLGARSLIIQLPIGIEENFKGIV 176
Query: 179 SMSDNPA---DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
++ A E A F+ I P D D+ +++ LLD
Sbjct: 177 NLIKMKAVIWKDESLGAEYFEEDI-----PADMQDKAAEYRARLLD 217
Score = 82.7 bits (201), Expect = 8e-15
Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 45/283 (15%)
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIP 203
AE+ +E +++ I G + + +P++ SA+ + + D I+D +P
Sbjct: 234 AEITEEQIKILIRKGTIEARF-YPILCGSALKNKG------------VQPLLDAIVDFLP 280
Query: 204 GPVD---------NSDEPLQFQVSLLD---------YND-YXXXXXXXXXXXXTIKVGDS 244
P+D ++ E F +S+++ ND + I G +
Sbjct: 281 SPIDIGIVKGIEVSTSEEKDFPISIVEPFSALAFKIMNDPFVGSLTFIRIYSGKITSGAT 340
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP 304
V + K ++ ++ +R++I+EA AGD++AL+G++D G+T++ D
Sbjct: 341 VINTV---KNKREKIGRMLLMHANNREDIKEASAGDIVALAGLKDTSTGDTLSDIDKQVV 397
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
L + EP +++ ++ + G ++ RL +E D S RV +
Sbjct: 398 LERMEFPEPVIELAVEPKSTADQEKMGLALS------RLAAE---DPSFRVSTDHETGQT 448
Query: 365 VVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACE 406
V+ G GELHL I+I+ MRRE E + P+V +E ACE
Sbjct: 449 VIKGMGELHLEIIIDRMRREFKVEANIGAPQVAYRETITTACE 491
Score = 46.9 bits (109), Expect = 5e-04
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP +V++ TP+EY G II L+ R+G + +M GN Q + VP + G+ S
Sbjct: 611 EPIMKVEVITPDEYMGDIIGDLNSRRGQIQNMDPRGNAQV-VTAHVPLAEMFGYVNTLRS 669
Query: 466 MTRGYGIMNHTFDQY 480
+++G + F Y
Sbjct: 670 LSQGRAQFSMIFSHY 684
sp|Q9ZEU4|EFG_APPPP ELONGATION FACTOR G (EF-G) >gi|4127381|emb|CAA09487| (AJ011104)
elongation factor G [Apple proliferation phytoplasma]
Length = 688
Score = 105 bits (260), Expect = 1e-21
Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 5/162 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKN 66
E RN+ ++AH+D GKTT + +L + + E + MD EQERGITI +
Sbjct: 8 EKTRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHDGDSQMDWMKQEQERGITITSAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T + RINI+DTPGH DF EV R ++++DG V V+DA G PQT V ++A E
Sbjct: 68 TTAFWKEHRINIIDTPGHVDFTVEVSRSLRVLDGAVAVIDAKAGVEPQTETVWRQATEYK 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
+ I+ VNK+DK A V L+ LG + + P+
Sbjct: 128 VPRIIFVNKMDKIG---ASFDYAVKTLYQRLGINASPIQLPI 166
Score = 58.9 bits (140), Expect = 1e-07
Identities = 57/255 (22%), Positives = 103/255 (40%), Gaps = 47/255 (18%)
Query: 166 FPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNS---------------- 209
FPV+ SA + I D IID++P P+D S
Sbjct: 254 FPVLCGSAFKNKG------------VKKILDAIIDYLPSPMDVSSIVGCNFENKEIIRKT 301
Query: 210 --DEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNF--RVTKLFGF 265
+EP + + Y TIK G VT +TK R+ +L
Sbjct: 302 SDNEPFTALAFKVMTDPYVGKLTFFRVYAGTIKTGSYVT-----NATKQVKERLGRLLQM 356
Query: 266 FGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSP 325
R+EI+E AGD++A G+++ G+T+T + L ++ EP +++
Sbjct: 357 HANSREEIKEVYAGDIVAAVGLKNTTPGDTLTSINDDIILESMNFPEPVIEIAIEPKTK- 415
Query: 326 FAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE- 384
A ++ + K+ E + ++ + +++ GELHL I+++ ++ E
Sbjct: 416 -ADQDKIGIALSKLSEE-------HPTFKIYTNRETAQTIIAAMGELHLEIILDRLKTEF 467
Query: 385 GYELQVSRPEVIIKE 399
E V++P+V +E
Sbjct: 468 KVEANVNQPQVAYRE 482
sp|O84444|EFG_CHLTR ELONGATION FACTOR G (EF-G) >gi|3328868|gb|AAC68036.1| (AE001317)
Elongation Factor G [Chlamydia trachomatis]
Length = 694
Score = 105 bits (260), Expect = 1e-21
Identities = 62/160 (38%), Positives = 92/160 (56%), Gaps = 5/160 (3%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKNTA 68
IRN+ ++AH+D GKTT + +L + E+ E MD EQERGITI + T
Sbjct: 11 IRNIGIMAHIDAGKTTTTERILFYAGRTHKIGEVHEGGATMDWMEQEQERGITITSAATT 70
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
V + G +INI+DTPGH DF EVER ++++DG V V DA G PQ+ V ++A + +
Sbjct: 71 VFWLGAKINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQANKYGVP 130
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
I VNK+D+ A ++ + E +LGA+ + P+
Sbjct: 131 RIAFVNKMDRMGANYFGAIESMRE---KLGANAIPVHCPI 167
Score = 62.1 bits (148), Expect = 1e-08
Identities = 63/284 (22%), Positives = 110/284 (38%), Gaps = 45/284 (15%)
Query: 136 IDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIF 195
++K P + +E + + G + +++ PV+ SA + +
Sbjct: 231 MEKVLENPDSITEEEIHTVMRKGVIEGKIN-PVLCGSAFKNKG------------VQQLL 277
Query: 196 DTIIDHIPGPVD-------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXX 236
D I+ +P P+D + D PL + + Y
Sbjct: 278 DVIVKWLPSPLDRGNVRGINLKTGEEVSLKPSKDGPLAALAFKIMTDPYVGRITFIRIYS 337
Query: 237 XTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETV 296
T+K G ++ S D K R+++L +R + E GD+ A G++ G+T+
Sbjct: 338 GTLKKGSAILNSTKD---KKERISRLLEMHANERTDRDEFTVGDIGACVGLKFSVTGDTL 394
Query: 297 TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
+ L + EP + M + RE K+ + L + + D + RV
Sbjct: 395 CDENQEIVLERIEAPEPVIDMAIEPKSK--GDRE-------KLAQALSALSEEDPTFRVS 445
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E + ++SG GELHL IL + M RE E V +P+V KE
Sbjct: 446 TNEETGQTIISGMGELHLDILRDRMIREFRVEANVGKPQVSYKE 489
sp|O52836|TETW_BUTFI TETRACYCLINE RESISTANCE PROTEIN TETW (TET(W))
>gi|2832432|emb|CAA10975.1| (AJ222769) TetW protein
[Butyrivibrio fibrisolvens]
Length = 639
Score = 105 bits (260), Expect = 1e-21
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 23/206 (11%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ ++AHVD GKTTL + LL S + E D+ LE++RGITI A T+
Sbjct: 3 IINIGILAHVDAGKTTLTESLLYASGAISEPGSVEKGTTRTDTMFLERQRGITIQAAVTS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+++ ++NI+DTPGH DF EV R + ++DG +LV+ A +G QTR + + N+
Sbjct: 63 FQWHRCKVNIVDTPGHMDFLAEVYRSLAVLDGAILVISAKDGVQAQTRILFHALRKMNIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
++ +NKID+ VV V + +L AD I + S+S +E
Sbjct: 123 TVIFINKIDQAGVDLQSVVQSVRD---KLSAD-----------IIIKQTVSLSPEIVLEE 168
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQ 214
+T +D +I +N+DE L+
Sbjct: 169 NTDIEAWDAVI-------ENNDELLE 187
gb|AAF02837.1|AC009894_8 (AC009894) elongation factor EF-2 [Arabidopsis thaliana]
Length = 846
Score = 105 bits (259), Expect = 1e-21
Identities = 61/177 (34%), Positives = 93/177 (52%), Gaps = 30/177 (16%)
Query: 3 KLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITI 62
++ + +IRN++VIAHVDHGK+TL D L+ + + R D+ A E ERGITI
Sbjct: 14 RIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITI 73
Query: 63 LAKNTAVEYNGTR----------------INILDTPGHADFGGEVERIMKMVDGVVLVVD 106
+ ++ Y T IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 KSTGISLYYEMTDESLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD 133
Query: 107 AYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQ 163
EG QT VL++AL + + P++ VNK+D+ F+EL D E+
Sbjct: 134 CIEGVCVQTETVLRQALGERIRPVLTVNKMDR--------------CFLELQVDGEE 176
sp|O23755|EF2_BETVU ELONGATION FACTOR 2 (EF-2) >gi|2369714|emb|CAB09900| (Z97178)
elongation factor 2 [Beta vulgaris]
Length = 843
Score = 105 bits (259), Expect = 1e-21
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 30/172 (17%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ + + R D+ A E ERGITI +
Sbjct: 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGI 75
Query: 68 AVEY----------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
++ Y N IN++D+PGH DF EV +++ DG ++VVD EG
Sbjct: 76 SLYYQMTDEALQSYKGERKGNDYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQ 163
QT VL++AL + + P++ VNK+D+ F+EL D E+
Sbjct: 136 CVQTETVLRQALGERIRPVLTVNKMDR--------------CFLELQVDGEE 173
sp|P75544|EFG_MYCPN ELONGATION FACTOR G (EF-G) >gi|2146118|pir||S73930 elongation
factor G - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674306 (AE000058) Mycoplasma pneumoniae, elongation
factor G; similar to Swiss-Prot Accession Number P13551,
from T. aquaticus [Mycoplasma pneumoniae]
Length = 688
Score = 105 bits (259), Expect = 1e-21
Identities = 60/169 (35%), Positives = 90/169 (52%), Gaps = 5/169 (2%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKNT 67
+ RN ++AH+D GKTT + +L S + E E MD E+ERGITI + T
Sbjct: 9 NFRNFGIMAHIDAGKTTTSERILFHSGRIHKIGETHDGESVMDWMEQEKERGITITSAAT 68
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
+V + +N++DTPGH DF EVER ++++DG + V+DA G PQT V ++A +
Sbjct: 69 SVSWKNCSLNLIDTPGHVDFTVEVERSLRVLDGAIAVLDAQMGVEPQTETVWRQASRYEV 128
Query: 128 TPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING 176
I+ VNK+DK A V + + LG + P+ + NG
Sbjct: 129 PRIIFVNKMDKTGANFERSVQSIQQ---RLGVKAVPIQLPIGAENDFNG 174
Score = 63.6 bits (152), Expect = 4e-09
Identities = 53/225 (23%), Positives = 90/225 (39%), Gaps = 31/225 (13%)
Query: 194 IFDTIIDHIPGPVD------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
+ D ++D +P PVD + D P + + +
Sbjct: 270 LLDAVVDFLPSPVDVPQAKAYGEDGNEVLISASDDAPFVGLAFKVATDPFVGRLTFVRVY 329
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGET 295
+K G V K K RV++L +R EI+E +AGD+ A+ G++D GET
Sbjct: 330 SGVLKSGSYV---KNVRKNKKERVSRLVKMHAQNRNEIEEIRAGDICAIIGLKDTTTGET 386
Query: 296 VTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRV 355
+ L + +P + + A +E + K+ E D + +
Sbjct: 387 LVDDKIDVQLEAMQFAQPVISLAVEPKTK--ADQEKMSIALSKLAEE-------DPTFKT 437
Query: 356 ENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ +++G GELHL IL++ MRRE E+ V P+V +E
Sbjct: 438 FTDPETGQTIIAGMGELHLDILVDRMRREFKVEVNVGAPQVSFRE 482
sp|O87844|EFG2_STRCO ELONGATION FACTOR G 2 (EF-G 2) >gi|3288610|emb|CAA19782| (AL031013)
elongation factor G [Streptomyces coelicolor]
Length = 686
Score = 104 bits (258), Expect = 2e-21
Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKNTA 68
+RN+ ++AHVD GKTT+ + +L + T R E+ + D + E++RGITI A +
Sbjct: 9 VRNLGILAHVDAGKTTVTERILYLTGTTHKRGEVHDGTTVTDFDPQERDRGITIFAAAVS 68
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ G RIN++DTPGH DF EVER ++++DG V V DA G PQ+ V ++A +
Sbjct: 69 CAWAGHRINLIDTPGHVDFADEVERSLRVLDGAVAVFDAVAGVEPQSESVWRQADRHGVP 128
Query: 129 PIVVVNKIDKPSA 141
I VNK+D+ A
Sbjct: 129 RIAFVNKMDRAGA 141
Score = 52.7 bits (124), Expect = 8e-06
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVT 297
TI GD+V + G+ + R+ ++ ++ A AGD++A+ G++ G T+
Sbjct: 328 TIGKGDTVWDA---GTRRTERIGRILRVRADRHDPLERAVAGDIVAVVGLKTARAGSTLC 384
Query: 298 PSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVEN 357
L + EP + + A S R +R EE D SL +
Sbjct: 385 APGAPLLLEPPGVAEPVVHVAVEARRSTETDRLAA-ALARLTEE--------DPSLALRT 435
Query: 358 TESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDG 402
+ V+SG GELHL + +E +RRE G E+ V RP V +E G
Sbjct: 436 DPETAQTVLSGMGELHLEVAVERVRREYGLEVTVGRPGVAYRETVG 481
sp|P30767|EFG_MYCLE ELONGATION FACTOR G (EF-G) >gi|419677|pir||S31150 translation
elongation factor G - Mycobacterium leprae
>gi|581337|emb|CAA78673| (Z14314) elongation factor G
[Mycobacterium leprae]
Length = 701
Score = 104 bits (258), Expect = 2e-21
Identities = 71/213 (33%), Positives = 111/213 (51%), Gaps = 6/213 (2%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
+RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 13 VRNIGIMAHIDAGKTTTTERILYYTGISYKIGEVHDGAATMDWMEQEQERGITITSAATT 72
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+N +INI+DTPGH DF EVER ++++DG V V D EG PQ+ V ++A + +
Sbjct: 73 CFWNDNQINIIDTPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYEVP 132
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
I VNK+DK A+ V + LGA+ + PV G + + A
Sbjct: 133 RICFVNKMDKIG---ADFYFSVRTMQERLGANVIPIQLPVGSEGDFEGVVDLVEMKAKVW 189
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
T A + + D + P D ++ +++ +LL+
Sbjct: 190 STEAKLGEK-YDVVGIPTDLQEKAEEYRTNLLE 221
Score = 61.7 bits (147), Expect = 2e-08
Identities = 85/356 (23%), Positives = 145/356 (39%), Gaps = 59/356 (16%)
Query: 166 FPVVYASAIN--GSSSMSDNPADQEHTMANIFDTIIDHIPGPVD-------NSDEPLQFQ 216
+PV+ SA G M D D + ++ I H+PG D ++DEPL
Sbjct: 259 YPVLCGSAFKNKGVQPMLDAVIDYLPSPLDV-PAAIGHVPGKEDEEIVRKPSTDEPLSAL 317
Query: 217 VSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEA 276
+ + + + G V ++ G K R+ KLF ++ A
Sbjct: 318 AFKVATHPFFGKLTYVRVYSGKVDSGSQV-INATKG--KKERLGKLFQMHSNKENPVETA 374
Query: 277 KAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTS 336
AG + A+ G++D G+T+ ++ L + +P +++ + +E ++
Sbjct: 375 SAGHIYAVIGLKDTTTGDTLADPNNQIVLESMTFPDPVIEVAIEPKTK--SDQEKLSLSI 432
Query: 337 RKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEV 395
+K+ E D + +V + V+ G GELHL IL++ MRRE E V +P+V
Sbjct: 433 QKLAEE-------DPTFKVHLDSETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQV 485
Query: 396 IIKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQAR--LIFLVPA 453
K E RV ++T E + +K Q G+GQ +I L P
Sbjct: 486 AYK-------ETIRRV-VETVE---------YTHKK------QTGGSGQFAKVIIKLEPF 522
Query: 454 RGLIGFTTEFMSMTRGYGIMNHTFDQYLPAVKGEIGGRHRGSLISMDSGQVTSYAM 509
G G T EF + G I +Y+P+V+ G+ +M G + +Y +
Sbjct: 523 SGENGATYEFENKVTGGRIPR----EYIPSVEA-------GARDAMQYGVLAAYPL 567
gb|AAF30936.1|AE002151_2 (AE002151) translation elongation factor G [Ureaplasma urealyticum]
Length = 688
Score = 104 bits (257), Expect = 2e-21
Identities = 66/192 (34%), Positives = 102/192 (52%), Gaps = 12/192 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN ++AH+D GKTT + +L + E + A MD A E+ERGITI + T
Sbjct: 9 RNFGIMAHIDAGKTTTSERILYHTGKNHKIGETHDGAATMDWMAQEKERGITITSAATYA 68
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
++ G +N++DTPGH DF EVER ++++DG V V+D G PQT V ++A + N+
Sbjct: 69 KWKGHSLNLIDTPGHVDFTVEVERSLRVLDGAVAVLDGQNGVEPQTETVWRQATKYNVPR 128
Query: 130 IVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGS-------SSMSD 182
IV VNK+DK A+ + + LG + P+ + GS + + D
Sbjct: 129 IVFVNKMDKTG---ADFYYSIETMKNRLGVKATAIQIPIGAEADFVGSIDLIEMKAYIYD 185
Query: 183 NPADQEHTMANI 194
AD+E+ + +I
Sbjct: 186 GKADEEYKIEDI 197
Score = 62.1 bits (148), Expect = 1e-08
Identities = 54/229 (23%), Positives = 95/229 (40%), Gaps = 39/229 (17%)
Query: 194 IFDTIIDHIPGP--------VDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ D ++D +P P VD+ P+++ +ND T +
Sbjct: 268 LLDAVVDFLPSPIDVPPIKGVDDHGNPIEY------HNDPNEPFAALAFKVATDPFVGRL 321
Query: 246 TL-----SKLDGST--------KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFV 292
T KLD T K R+++L +R EI AGD+ A+ G++D
Sbjct: 322 TYIRVYSGKLDKGTYIYNATKDKKERISRLVKMHSNNRDEIDSISAGDICAVIGLKDTTT 381
Query: 293 GETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSEL-QTDV 351
G+T+ L + EP + ++ E K ++ +S+L + D
Sbjct: 382 GDTICDEKKPVILEQMVFAEPVISLSV----------EPKTKADQEKMSLALSKLAEEDP 431
Query: 352 SLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ R E + +++G GELHL +L++ MRRE ++ V P+V +E
Sbjct: 432 TFRTYTNEETGQTIIAGMGELHLDVLVDRMRREFNVQVNVGAPQVSYRE 480
Score = 47.3 bits (110), Expect = 4e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP V + TP++Y G+++ +S+R+G + + GN QA + VP + G+ T+
Sbjct: 594 VLLEPIMSVDVTTPDDYFGTVMGDISKRRGVIEGQEQRGNAQA-IKAKVPLSEMFGYATD 652
Query: 463 FMSMTRGYGIMNHTFDQYLPAVK 485
S T+G G F Y A K
Sbjct: 653 LRSNTQGRGQYIMQFSHYAQAPK 675
emb|CAB05774.1| (Z83235) Similarity to Entamoeba elongation factor EF-2 (Similarity
to Yeast hypothetical protein YNQ3 (SW:P53893); cDNA EST
EMBL:D28031 comes from this gene; cDNA EST EMBL:D28030
comes from this gene; cDNA EST EMBL:D33503 co...
Length = 906
Score = 104 bits (257), Expect = 2e-21
Identities = 52/134 (38%), Positives = 79/134 (58%)
Query: 5 TKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILA 64
TK E IRNV ++AHVDHGKT+ D L+ + + +R R MDS EQ RGIT+ +
Sbjct: 14 TKPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMAGKLRYMDSREDEQTRGITMKS 73
Query: 65 KNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
++ IN++D+PGH DF GEV + + D +L++D EG QT ++++ +
Sbjct: 74 SGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLIDVIEGICSQTEALIRQVIR 133
Query: 125 QNLTPIVVVNKIDK 138
I+V+NKID+
Sbjct: 134 NGQAMILVINKIDR 147
sp|Q48712|TETS_LACLA TETRACYCLINE RESISTANCE PROTEIN TETS (TET(S))
>gi|2467238|emb|CAA63528| (X92946) tetS [Lactococcus
lactis]
Length = 646
Score = 104 bits (257), Expect = 2e-21
Identities = 104/445 (23%), Positives = 190/445 (42%), Gaps = 67/445 (15%)
Query: 4 LTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE-----RAMDSNALEQER 58
+ +++ I N+ ++AHVD GKTTL + LL S + KEL D+ LE++R
Sbjct: 1 MEEIKLKIINIGILAHVDAGKTTLTESLLYSSGRI---KELGSVDSGTTKTDTMFLERQR 57
Query: 59 GITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFV 118
GITI T+ + ++NI+DTPGH DF +V R + ++DG +L++ A +G QTR +
Sbjct: 58 GITIQTAITSFQRENVKVNIVDTPGHMDFLADVYRSLSVLDGAILLISAKDGVQSQTRIL 117
Query: 119 LKKALEQNLTPIVVVNKIDKPSARPAEVV---------DEVLELFIELGADDEQLDF--P 167
+ N+ I +NKID+ +V D +++ + L +D+ P
Sbjct: 118 FHALRKMNIPIIFFINKIDQNGINLPDVYQDIKDKLSDDIIIKQTVNLNLKPYVIDYTEP 177
Query: 168 VVYASAINGSSSMSD--------NPADQEHT-----------------------MANIFD 196
+ + I G+ + + N A+ E + + +
Sbjct: 178 EQWETVIVGNDYLLEKYTIGKTLNIAELEKEENERIQSCSLYPVYHGSAKNNIGIKQLIE 237
Query: 197 TIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKN 256
I + P + + L V ++Y+D T+ + DSV +S+ +
Sbjct: 238 VITSKLFSPTQLNSDKLCGNVFKVEYSDDGQRLVYVRLYSGTLHLRDSVNISE----KEK 293
Query: 257 FRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQ 316
+VT+++ + ++I +A+ G++I L E + + + + IL P LQ
Sbjct: 294 IKVTEMYTSINGELRQIDKAEPGEIIILKN-ELLKLNNVLGDKKRLPHREILENPLPMLQ 352
Query: 317 MTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSI 376
T K V K+ + L +D L+ + V+S GE+ + +
Sbjct: 353 TTI---------EPCKSVQREKLLDALFEISDSDPLLQYYVDTVTHEIVLSFLGEVQMEV 403
Query: 377 LIETMRREGY--ELQVSRPEVIIKE 399
T+ +E Y E++ +P VI E
Sbjct: 404 TC-TLIQEKYHIEIETRKPTVIYME 427
gb|AAF09887.1|AE001891_6 (AE001891) elongation factor G [Deinococcus radiodurans]
Length = 698
Score = 104 bits (256), Expect = 3e-21
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ + AH+D GKTT + +L + + E E A MD E+ERGITI A T
Sbjct: 14 RNIGIAAHIDAGKTTTTERILFFTGRIRNLGETHEGASQMDWMEQERERGITITAAATTA 73
Query: 70 EYNGTR------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ T +NI+DTPGH DF EVER M+++DG V V D+ +G PQ+ V ++A
Sbjct: 74 HWTHTETGEDYTVNIIDTPGHVDFTIEVERSMRVLDGAVAVFDSSQGVEPQSETVWRQAD 133
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
+ + NK+DK A VV+++ E LGA + +P+ A N + D
Sbjct: 134 RYGVPRVAFANKMDKTGASFDLVVNDIRE---RLGAIPAPIQYPM---GAENDFKGVIDI 187
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
Q HT N T I P + D+ + + L++
Sbjct: 188 VRMQAHTFTNDLGTEIQVGDVPAEYMDKVNEMRQQLIE 225
Score = 62.1 bits (148), Expect = 1e-08
Identities = 66/276 (23%), Positives = 116/276 (41%), Gaps = 46/276 (16%)
Query: 145 EVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPG 204
E + L I G D+Q+ FPV+ SA+ + + D ++D++P
Sbjct: 243 EPTQQELIAAIRKGTIDKQI-FPVLCGSALKNKG------------VQLLLDAVVDYLPS 289
Query: 205 PVD---------NSDEPLQF------QVSLLDY----NDYXXXXXXXXXXXXTIKVGDSV 245
P++ + + +F +++ L + + Y T+ G V
Sbjct: 290 PLEVPSIKGTHEDGETVTEFPADPEGKLAALAFKIMADPYVGRLTFVRIYSGTLTSGSYV 349
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGET-VTPSDHVEP 304
+ D K RV +L R+E+ E KAG+L A+ G++D G T + D
Sbjct: 350 YNASKD---KRERVGRLLKMHANSREEVTELKAGELGAVIGLKDAGTGNTLIGDGDDRVL 406
Query: 305 LPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKW 364
L + I EP +++ A +E V +K+ E D + +VE + +
Sbjct: 407 LESIDIPEPVIKLAIEPKTK--ADQEKMGVGLQKLAEE-------DPTFKVETDQESGQT 457
Query: 365 VVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
++G GELHL IL++ ++RE E V P+V +E
Sbjct: 458 TIAGMGELHLEILVDRLKREYKVEANVGAPQVAYRE 493
Score = 57.0 bits (135), Expect = 4e-07
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP RV++ TPEEY G +I L+ R+G + M+ GN Q F VP + G+ T+ S
Sbjct: 611 EPVMRVEVTTPEEYMGDVIGDLNSRRGQIQGMEARGNAQIVKAF-VPLSEMFGYATDMRS 669
Query: 466 MTRGYGIMNHTFDQY 480
T+G + FD Y
Sbjct: 670 KTQGRASYSMFFDHY 684
sp|P74228|EFG2_SYNY3 ELONGATION FACTOR G 2 (EF-G 2) >gi|1653408|dbj|BAA18322| (D90913)
elongation factor EF-G [Synechocystis sp.]
Length = 691
Score = 104 bits (256), Expect = 3e-21
Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
E IRN+ + AH+D GKTT + +L S + E+ E D A E+ERGITI A
Sbjct: 8 ERIRNIGIAAHIDAGKTTTTERILFYSGVVHKIGEVHEGTAVTDWMAQERERGITITAAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+ ++ G INI+DTPGH DF EVER M+++DGV+ V + G PQ+ V ++A
Sbjct: 68 ISTDWLGHHINIIDTPGHVDFTIEVERSMRVLDGVIAVFCSVGGVQPQSETVWRQAERYQ 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
+ I VNK+D+ A V ++ + L A+ + P+ + G + D
Sbjct: 128 VPRIAFVNKMDRTGANFFRVCQQIGD---RLRANAVPVQIPIGSEAEFEG---IVDLVRM 181
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
+ + N T I +P P D+ ++++ L++
Sbjct: 182 KAYLYKNDLGTDIQEVPIPDSVKDKTEEYRLRLVE 216
Score = 58.6 bits (139), Expect = 1e-07
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K R+++L DR E+ + AGDL A+ G++D G+T+ L L + +P
Sbjct: 345 KKERISRLIILKADDRIEVDQLNAGDLGAVLGLKDTLTGDTLCDDQEPIILESLFVPQPV 404
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + K+ + L S + D + RV ++ V++G GELHL
Sbjct: 405 ISVAVEPKTKQ---------DMDKLSKALQSLSEEDPTFRVSVDPETNQTVIAGMGELHL 455
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
IL++ M RE E V P+V +E
Sbjct: 456 EILVDRMLREFKVEANVGAPQVAYRE 481
Score = 54.3 bits (128), Expect = 3e-06
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+ + D V EP +V+I+ P+++ G++I L+ R+G ++ Q T G A++ VP +
Sbjct: 590 VGQADPVLLEPVMKVEIEVPDDFMGNVIGDLNARRGH-IEGQETEQGIAKVAASVPLAEM 648
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ S T+G GI + F Y
Sbjct: 649 FGYATDIRSKTQGRGIFSMEFSHY 672
sp|Q07803|EFGM_RAT ELONGATION FACTOR G, MITOCHONDRIAL PRECURSOR (MEF-G)
>gi|543383|pir||S40780 translation elongation factor G,
mitochondrial - rat >gi|310102 (L14684) elongation
factor G [Rattus norvegicus]
Length = 752
Score = 104 bits (256), Expect = 3e-21
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITIL 63
E IRN+ + AH+D GKTTL + +L + + E+ + MDS LE++RGITI
Sbjct: 45 EKIRNIGISAHIDSGKTTLTERVLYYTGRIATMHEVKGKDGVGAVMDSMELERQRGITIQ 104
Query: 64 AKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ T + INI+DTPGH DF EVER ++++DG VLV+ A G QT V ++
Sbjct: 105 SAATYTMWRDVNINIIDTPGHVDFTIEVERALRVLDGAVLVLCAVGGVQCQTMTVSRQMK 164
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEV 150
N+ + +NK+D+ + PA + ++
Sbjct: 165 RYNVPFLTFINKLDRMGSNPARALQQM 191
dbj|BAA11470| (D79220) Peptide Elongation Factor 2 [Glugea plecoglossi]
Length = 848
Score = 103 bits (255), Expect = 4e-21
Identities = 58/148 (39%), Positives = 92/148 (61%), Gaps = 22/148 (14%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
+IRN++VIAHVDHGK+TL D L+ +++ + + +R MD+ EQERGITI K+TA+
Sbjct: 18 NIRNISVIAHVDHGKSTLTDCLVIKAK-IASEDSGGKRYMDTREDEQERGITI--KSTAI 74
Query: 70 -----------------EYNGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEG 110
+Y+G IN++D+PGH DF EV +++ DG ++V+D +G
Sbjct: 75 SLNFNLNENVLKEHMKQKYSGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVIDCVDG 134
Query: 111 TMPQTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++A+ + + P +V+NKID+
Sbjct: 135 ICVQTETVLRQAIAERIKPTMVLNKIDR 162
sp|Q00937|TETQ_BACTN TETRACYCLINE RESISTANCE PROTEIN TETQ (TETA(Q)1)
>gi|282147|pir||S23757 tetracycline resistance protein
tetQ - Bacteroides thetaiotaomicron
>gi|58326|emb|CAA41552| (X58717) tetQ [Bacteroides
thetaiotaomicron]
Length = 641
Score = 103 bits (255), Expect = 4e-21
Identities = 51/131 (38%), Positives = 80/131 (60%), Gaps = 2/131 (1%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNT 67
+I N+ ++AH+D GKT++ + LL S + + + DS +E+ RGIT+ A T
Sbjct: 2 NIINLGILAHIDAGKTSVTENLLFASGATEKCGCVDNGDTITDSMDIEKRRGITVRASTT 61
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
++ +NG + NI+DTPGH DF EVER KM+DG VL++ A EG QT+ + + +
Sbjct: 62 SIIWNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQKLQI 121
Query: 128 TPIVVVNKIDK 138
I+ +NKID+
Sbjct: 122 PTIIFINKIDR 132
sp|P29691|EF2_CAEEL ELONGATION FACTOR 2 (EF-2) >gi|3876400|emb|CAB02985.1| (Z81068)
similar to Elongation factor Tu family (contains ATP/GTP
binding P-loop); cDNA EST EMBL:D26645 comes from this
gene; cDNA EST EMBL:D33423 comes from this gene; cDNA
EST EMBL:D33833 comes from this gene; cDNA EST yk41...
Length = 852
Score = 103 bits (254), Expect = 5e-21
Identities = 59/177 (33%), Positives = 93/177 (52%), Gaps = 32/177 (18%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + K R D+ EQER ITI K+T
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AV------------------------------EYNGTRINILDTPGHADFGGEVERIMKM 97
A+ +YNG IN++D+PGH DF EV +++
Sbjct: 74 AISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRV 133
Query: 98 VDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELF 154
DG ++VVD G QT VL++A+ + + P++ +NK+D+ +E+ + F
Sbjct: 134 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTF 190
sp|Q23716|EF2_CRYPV ELONGATION FACTOR 2 (EF-2) >gi|706975 (U21667) elongation factor-2
[Cryptosporidium parvum]
Length = 832
Score = 103 bits (254), Expect = 5e-21
Identities = 54/139 (38%), Positives = 86/139 (61%), Gaps = 10/139 (7%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
+IRN++VIAHVDHGK+TL D L+ ++ + ++ R D+ A EQER ITI + ++
Sbjct: 18 NIRNMSVIAHVDHGKSTLTDSLVCKAGIIASKAAGDARFTDTRADEQERCITIKSTGISL 77
Query: 70 EYNGTR----------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
+ IN++D+PGH DF EV +++ DG ++VVDA +G QT VL
Sbjct: 78 FFEHDLEDGKGRQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDAVDGVCIQTETVL 137
Query: 120 KKALEQNLTPIVVVNKIDK 138
++AL + + P++ VNK+D+
Sbjct: 138 RQALNERIRPVLHVNKVDR 156
sp|Q02652|TETM_STRLI TETRACYCLINE RESISTANCE PROTEIN TETM >gi|477352|pir||A48900
tetracycline resistance protein - Streptomyces lividans
>gi|153502 (M74049) tetracycline resistance protein
[Streptomyces lividans]
Length = 639
Score = 103 bits (254), Expect = 5e-21
Identities = 54/143 (37%), Positives = 83/143 (57%), Gaps = 2/143 (1%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ ++AHVD GKT+L + LL +D + + +E+ RGITI + A
Sbjct: 5 NIGILAHVDAGKTSLTERLLFDHGAVDRLGSVDAGDTRTVDGGIERRRGITIRSAVAAFT 64
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
TR+N++DTPGH+DF EVER ++++DG VL++ A EG +TR +++ L I
Sbjct: 65 VGDTRVNLIDTPGHSDFVAEVERALEVLDGAVLLLSAVEGVQARTRVLMRALRRLRLPTI 124
Query: 131 VVVNKIDKPSARPAEVVDEVLEL 153
V VNKID+ AR ++ +V L
Sbjct: 125 VFVNKIDRAGARTDGLLGDVRRL 147
sp|P42473|EFTU_CHLVI ELONGATION FACTOR TU (EF-TU) >gi|560825|emb|CAA54322| (X77033)
elongation factor Tu [Chlorobium vibrioforme]
Length = 393
Score = 102 bits (253), Expect = 6e-21
Identities = 85/273 (31%), Positives = 136/273 (49%), Gaps = 19/273 (6%)
Query: 13 NVAVIAHVDHGKTTL---VDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
N+ I HVDHGKTTL + +L +S AR E + +D E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITSVLAKSGKAAAR-EFGD--IDKAPEERERGITISTAHVEY 70
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
+ + +D PGHAD+ + +DG +LVV +G MPQTR + A + N+
Sbjct: 71 QTDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMPQTREHILLARQVNVPA 130
Query: 130 IVV-VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
+VV +NK+D E+V+ E+ EL E G + D P++ SA+N +++ +P +
Sbjct: 131 LVVFLNKVDIADPELLELVEMELRELLTEYGFPGD--DIPIIKGSALN---ALNGDP-EG 184
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
E + + D + D+IP PV + D+P V + IKVG+ V +
Sbjct: 185 EKAIMELMDAVDDYIPEPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGIIKVGNEVEI 244
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
+ +TK+ VT + F ++ + E +AGD
Sbjct: 245 VGIKPTTKSV-VTGIEMF----QKTLDEGQAGD 272
sp|O83748|EFG2_TREPA ELONGATION FACTOR G 2 (EF-G 2) >gi|3323075 (AE001248) translation
elongation factor G (fusA-2) [Treponema pallidum]
Length = 695
Score = 102 bits (252), Expect = 8e-21
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 8/170 (4%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITILAKN 66
RN+ + AH+D GKTTL + +L + A E+ + MD+ LE+ERGITI + +
Sbjct: 9 RNIGISAHIDSGKTTLSERILFYCDRIHAIHEVRGKDGVGATMDNMELERERGITIQSAS 68
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T V++ G IN++DTPGH DF EVER ++++DG VLV+ + G Q+ V ++ +
Sbjct: 69 TQVQWKGHTINVIDTPGHVDFTIEVERSLRVLDGAVLVLCSVAGVQSQSITVDRQLRRYH 128
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING 176
+ I +NK D+ A P +V ++ E +L + + P+ + G
Sbjct: 129 VPRISFINKCDRTGANPFKVCAQLRE---KLSLNAHLMQLPIGLEDRLEG 175
Score = 51.9 bits (122), Expect = 1e-05
Identities = 39/146 (26%), Positives = 66/146 (44%), Gaps = 11/146 (7%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K F+V +L ++I E GD++AL G+ D G+T D + + + EP
Sbjct: 346 KKFKVGRLVRMNSNQMEDISEGTPGDIVALFGV-DCASGDTFCSGDLNYAMTSMFVPEPV 404
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ ++ + A + K + R E D + R ++ ++ G GELHL
Sbjct: 405 ISLSITPKDKRSADQVSKALN------RFTKE---DPTFRSFVDPESNQTIIQGMGELHL 455
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
+ IE MRRE E++ P+V +E
Sbjct: 456 DVYIERMRREYKCEVETGMPQVAYRE 481
Score = 43.4 bits (100), Expect = 0.006
Identities = 25/84 (29%), Positives = 44/84 (51%), Gaps = 1/84 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP RV ++ P+E+QGS+ +++R+G ++ +R+ VP + GF+T
Sbjct: 595 VVLEPIMRVSVEGPQEFQGSVFGLINQRRGVVVS-SADDEQFSRVDAEVPLSEMFGFSTV 653
Query: 463 FMSMTRGYGIMNHTFDQYLPAVKG 486
S T+G + F +Y A +G
Sbjct: 654 LRSSTQGKAEYSMEFAKYGKAPQG 677
sp|P13060|EF2_DROME ELONGATION FACTOR 2 (EF-2) >gi|84947|pir||S05988 translation
elongation factor eEF-2 - fruit fly (Drosophila
melanogaster) >gi|7919|emb|CAA33804| (X15805)
translation elongation factor 2 (AA 1-844) [Drosophila
melanogaster]
Length = 844
Score = 102 bits (251), Expect = 1e-20
Identities = 57/153 (37%), Positives = 86/153 (55%), Gaps = 24/153 (15%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + K R D+ EQER ITI K+T
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGAKAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AV----------------------EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVV 105
A+ E G IN++D+PGH DF EV +++ DG ++VV
Sbjct: 74 AISMYFEVEEKDLVFITHPDQREKECKGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 133
Query: 106 DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
D G QT VL++A+ + + PI+ +NK+D+
Sbjct: 134 DCVSGVCVQTETVLRQAIAERIKPILFMNKMDR 166
pir||A40411 translation elongation factor eEF-2 - Caenorhabditis elegans
>gi|156279 (M86959) elongation factor [Caenorhabditis
elegans]
Length = 852
Score = 101 bits (250), Expect = 1e-20
Identities = 59/177 (33%), Positives = 92/177 (51%), Gaps = 32/177 (18%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + K R D+ EQER ITI K+T
Sbjct: 16 KRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AV------------------------------EYNGTRINILDTPGHADFGGEVERIMKM 97
A+ +YNG IN++D+PGH DF EV + +
Sbjct: 74 AISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGV 133
Query: 98 VDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELF 154
DG ++VVD G QT VL++A+ + + P++ +NK+D+ +E+ + F
Sbjct: 134 TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMNKMDRALLELQLGAEELFQTF 190
sp|Q9Z9A7|EFTU_CHLPN ELONGATION FACTOR TU (EF-TU) >gi|4376331|gb|AAD18227| (AE001592)
Elongation Factor Tu [Chlamydia pneumoniae]
Length = 394
Score = 101 bits (248), Expect = 2e-20
Identities = 85/297 (28%), Positives = 130/297 (43%), Gaps = 14/297 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + ++D+ E+ RGITI A + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITRALSGDGLASFRDYSSIDNTPEEKARGITINASHVEYETP 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQT+ + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTM 191
+NK+D S AE++D V EL + P++ SA+ + A+ +
Sbjct: 134 FLNKVDMISQEDAELIDLVEMELSELLEEKGYKGCPIIRGSALKA----LEGDANYIEKV 189
Query: 192 ANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLD 251
+ + D+IP P D+P + + +KV D V L L
Sbjct: 190 RELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGL- 248
Query: 252 GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
G TK VT + F R+E+ E +AG+ + L G D+ G V + V+P
Sbjct: 249 GETKETIVTGVEMF----RKELPEGRAGENVGLLLRGIGKNDVERGMVVCQPNSVKP 301
sp|P43925|EFG_HAEIN ELONGATION FACTOR G (EF-G) >gi|1074053|pir||F64078 translation
elongation factor EF-G (fusA homolog) - Haemophilus
influenzae (strain Rd KW20) >gi|1573567 (U32739)
elongation factor G (fusA) [Haemophilus influenzae Rd]
Length = 700
Score = 101 bits (248), Expect = 2e-20
Identities = 65/169 (38%), Positives = 92/169 (53%), Gaps = 12/169 (7%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI +
Sbjct: 8 ERYRNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAA 67
Query: 67 TAVEYNGT-------RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
T ++G RIN++DTPGH DF EVER M+++DG V+V A G PQ+ V
Sbjct: 68 TTAFWSGMSQQFPQHRINVIDTPGHVDFTVEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127
Query: 120 KKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
++A + + I VNK+D+ A VV+ +L LGA+ L PV
Sbjct: 128 RQANKYEVPRIAFVNKMDRTGANFLRVVE---QLKTRLGANAIPLQLPV 173
Score = 68.7 bits (165), Expect = 1e-10
Identities = 62/278 (22%), Positives = 112/278 (39%), Gaps = 36/278 (12%)
Query: 144 AEVVDEVLELFIELGADD---EQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIID 200
AE +E++E + LG +D E++ + N ++ A + + + D +++
Sbjct: 227 AEASEELMEKY--LGGEDLTEEEIKSALRQRVLANEIILVTCGSAFKNKGVQAMLDAVVE 284
Query: 201 HIPGPVD------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
++P P D + +EP + + + I G
Sbjct: 285 YLPAPTDIPAIKGINPDETEGERHASDEEPFSSLAFKIATDPFVGNLTFFRVYSGVINSG 344
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHV 302
D+V S K R ++ R+EI+E +AGD+ A G++D+ G+T+ D
Sbjct: 345 DTVLNSVRQ---KRERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCAIDAP 401
Query: 303 EPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPD 362
L + EP + + K+ L Q D S RV E
Sbjct: 402 IILERMEFPEPVISVAVEPKTK---------ADQEKMGLALGRLAQEDPSFRVHTDEESG 452
Query: 363 KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL I+++ M+RE E + +P+V +E
Sbjct: 453 ETIISGMGELHLDIIVDRMKREFKVEANIGKPQVSYRE 490
gi|3642665 (U89415) elongation factor 2 [Mus musculus]
Length = 259
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 8 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 65
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 66 AISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 125
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 126 GVCVQTETVLRQAIAERIKPVLMMNKMDR 154
sp|O53790|EFG_MYCTU ELONGATION FACTOR G (EF-G) >gi|3261535|emb|CAA17471| (AL021943)
fusA [Mycobacterium tuberculosis]
Length = 701
Score = 100 bits (247), Expect = 3e-20
Identities = 68/213 (31%), Positives = 110/213 (50%), Gaps = 6/213 (2%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
+RN ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 13 VRNFGIMAHIDAGKTTTTERILYYTGINYKIGEVHDGAATMDWMEQEQERGITITSAATT 72
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ ++NI+DTPGH DF EVER ++++DG V V D EG PQ+ V ++A + ++
Sbjct: 73 TFWKDNQLNIIDTPGHVDFTVEVERNLRVLDGAVAVFDGKEGVEPQSEQVWRQADKYDVP 132
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
I VNK+DK A+ V + LGA+ + PV + G + + A
Sbjct: 133 RICFVNKMDKIG---ADFYFSVRTMGERLGANAVPIQLPVGAEADFEGVVDLVEMNAKVW 189
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD 221
+ +T D + P D +++ +++ LL+
Sbjct: 190 RGETKLGET-YDTVEIPADLAEQAEEYRTKLLE 221
Score = 61.3 bits (146), Expect = 2e-08
Identities = 71/314 (22%), Positives = 121/314 (37%), Gaps = 62/314 (19%)
Query: 194 IFDTIIDHIPGPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXX 233
+ D ++D++P P+D +DEP + + +
Sbjct: 275 MLDAVVDYLPSPLDVPPAIGHAPAKEDEEVVRKATTDEPFAALAFKIATHPFFGKLTYIR 334
Query: 234 XXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVG 293
T++ G V ++ G K R+ KLF + A AG + A+ G++D G
Sbjct: 335 VYSGTVESGSQV-INATKG--KKERLGKLFQMHSNKENPVDRASAGHIYAVIGLKDTTTG 391
Query: 294 ETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSL 353
+T++ + L + +P +++ + +E ++ +K+ E D +
Sbjct: 392 DTLSDPNQQIVLESMTFPDPVIEVAIEPKTK--SDQEKLSLSIQKLAEE-------DPTF 442
Query: 354 RVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDGVACEPFERVQ 412
+V + V+ G GELHL IL++ MRRE E V +P+V KE
Sbjct: 443 KVHLDSETGQTVIGGMGELHLDILVDRMRREFKVEANVGKPQVAYKE------------- 489
Query: 413 IDTPEEYQGSIIQALSERKGDMLDMQITGNGQAR--LIFLVPARGLIGFTTEFMSMTRGY 470
I+ L + Q G+GQ +I L P G G T EF S G
Sbjct: 490 ----------TIKRLVQNVEYTHKKQTGGSGQFAKVIINLEPFTGEEGATYEFESKVTGG 539
Query: 471 GIMNHTFDQYLPAV 484
I +Y+P+V
Sbjct: 540 RIPR----EYIPSV 549
Score = 43.4 bits (100), Expect = 0.006
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 3/79 (3%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL-VPARGLIGFTT 461
V EP V++ TPE+Y G +I L+ R+G + M+ AR++ VP + G+
Sbjct: 607 VILEPIMAVEVTTPEDYMGDVIGDLNSRRGQIQAME--ERAGARVVRAHVPLSEMFGYVG 664
Query: 462 EFMSMTRGYGIMNHTFDQY 480
+ S T+G + FD Y
Sbjct: 665 DLRSKTQGRANYSMVFDSY 683
emb|CAA73881| (Y13477) mitochondrial elongation factor G [Leishmania mexicana]
Length = 236
Score = 100 bits (247), Expect = 3e-20
Identities = 58/164 (35%), Positives = 89/164 (53%), Gaps = 11/164 (6%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL-----AERAMDSNALEQERGITILAK 65
+RN+ + AH+D GKTTL + +L S + E+ MDS LE+ERGITI +
Sbjct: 29 MRNIGIRAHIDSGKTTLSERVLFYSGRIGKIHEVKGGTEVGATMDSMELEKERGITIASA 88
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
T + + INI+DTPGH DF EVER ++++DG +L++ A G QT V ++
Sbjct: 89 ATQCRWKNSTINIIDTPGHVDFTIEVERALRVLDGAILLMCAVGGVQSQTLTVDRQMKRY 148
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLE------LFIELGADDEQ 163
+ + +NK+D+ +A P V + E +FI+L Q
Sbjct: 149 GVPRVCFINKLDRDNANPQRAVKQAQERLGINAVFIQLNMGTAQ 192
sp|Q90705|EF2_CHICK ELONGATION FACTOR 2 (EF-2) >gi|1184958 (U46663) elongation factor 2
[Gallus gallus]
Length = 858
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 AISLFYELSENDLAFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162
prf||1921319A elongation factor 2 [Gallus gallus]
Length = 169
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 AISLFYELSENDLAFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162
gi|600159 (U17362) elongation factor 2 [Cricetulus griseus]
Length = 858
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 AISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162
sp|P05197|EF2_RAT ELONGATION FACTOR 2 (EF-2) >gi|625343|pir||EFRT2 translation
elongation factor eEF-2 - rat >gi|56082|emb|CAA68805|
(Y07504) EF-2 (AA 1-858) [Rattus norvegicus]
>gi|226339|prf||1507204A elongation factor 2 [Rattus
norvegicus]
Length = 858
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 AISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162
sp|P05086|EF2_MESAU ELONGATION FACTOR 2 (EF-2) >gi|90183|pir||A25440 translation
elongation factor eEF-2 - hamster >gi|304505 (M13708)
elongation factor 2 [Cricetulus griseus]
Length = 858
Score = 100 bits (247), Expect = 3e-20
Identities = 54/149 (36%), Positives = 88/149 (58%), Gaps = 20/149 (13%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+T
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KST 73
Query: 68 AVEY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYE 109
A+ +G IN++D+PGH DF EV +++ DG ++VVD
Sbjct: 74 AISLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVS 133
Query: 110 GTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
G QT VL++A+ + + P++++NK+D+
Sbjct: 134 GVCVQTETVLRQAIAERIKPVLMMNKMDR 162
sp|P09445|EF2_CRIGR ELONGATION FACTOR 2 (EF-2) >gi|90184|pir||A28660 translation
elongation factor eEF-2 - hamster >gi|387049 (J03200)
elongation factor 2 [Cricetus cricetus]
Length = 858
Score = 100 bits (246), Expect = 4e-20
Identities = 54/147 (36%), Positives = 87/147 (58%), Gaps = 20/147 (13%)
Query: 10 DIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
+IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI K+TA+
Sbjct: 18 NIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITI--KSTAI 75
Query: 70 EY------------------NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
+G IN++D+PGH DF EV +++ DG ++VVD G
Sbjct: 76 SLFYELSENDLNFIKQSKDGSGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++A+ + + P++++NK+D+
Sbjct: 136 CVQTETVLRQAIAERIKPVLMMNKMDR 162
sp|P38525|EFG_THEMA ELONGATION FACTOR G (EF-G) >gi|4982069|gb|AAD36570.1|AE001799_2
(AE001799) translation elongation factor G [Thermotoga
maritima]
Length = 695
Score = 99.8 bits (245), Expect = 5e-20
Identities = 54/139 (38%), Positives = 80/139 (56%), Gaps = 10/139 (7%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNAL------EQERGITI 62
+ +RN+ ++AH+D GKTT + +L + RK + N E+ERGITI
Sbjct: 12 DKLRNIGIMAHIDAGKTTTTERILYYT----GRKHFIGDVDEGNTTTDWMPQEKERGITI 67
Query: 63 LAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ T + G RINI+DTPGH DF EVER ++++DG + V DA G PQ+ V ++A
Sbjct: 68 QSAATTCFWKGYRINIIDTPGHVDFTAEVERALRVLDGAIAVFDATAGVEPQSETVWRQA 127
Query: 123 LEQNLTPIVVVNKIDKPSA 141
+ N+ I +NK+DK A
Sbjct: 128 DKYNVPRIAFMNKMDKVGA 146
Score = 63.2 bits (151), Expect = 6e-09
Identities = 61/278 (21%), Positives = 124/278 (43%), Gaps = 35/278 (12%)
Query: 144 AEVVDEVLELFIELGAD--DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDH 201
AE+ +E+LE ++E G + +E++ + A+ N + + A + + D +ID+
Sbjct: 223 AELDEEILEKYLE-GEEISEEEIKRVLRKATIENKAVPVLCGAAKANKGIQPLLDAVIDY 281
Query: 202 IPGPVD-------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
+P P+D + +EP V + + Y ++ G
Sbjct: 282 LPSPLDLPPVKGWRVSDGEVVYRKPDENEPFTALVFKVQVDPYIGKLVYFRVYSGRLEKG 341
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHV 302
V S + R++++ R+E+ + GD+ A G++ G+T+ D
Sbjct: 342 SYVYNST---KGQRERISRIVFMHADKREEVDYVRPGDIAAGVGLKVSQTGDTLC--DEK 396
Query: 303 EPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPD 362
EP+ + ID P ++ A E K+ + L++ + D +L+V +
Sbjct: 397 EPIILEKIDFPEPVISLAVEPVTKADEE-------KLVKALLALSEEDPTLQVRVDKETG 449
Query: 363 KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL I+++ ++RE G ++V +P+V +E
Sbjct: 450 ETIISGMGELHLEIVVDRLKREFGVNVRVGQPQVAYRE 487
Score = 44.5 bits (103), Expect = 0.002
Identities = 24/84 (28%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+K+ V EP +++I TPEEY G+II L+ R+ + ++ G+ + ++ VP
Sbjct: 598 MKKAQPVLLEPIMKLEITTPEEYMGNIISDLNSRRAKVESLETRGHLKV-IVAKVPLSET 656
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T S+++G F Y
Sbjct: 657 FGYATVLRSLSQGRASYIMQFSHY 680
pir||S35701 translation elongation factor G, chloroplast - soybean
Length = 787
Score = 99.8 bits (245), Expect = 5e-20
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 5/179 (2%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 98 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 157
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T +N RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A +
Sbjct: 158 TTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 217
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+ I VNK+D+ A D ++ LGA + P+ G + N A
Sbjct: 218 VPRICFVNKMDRLGANFYRTRDMIV---TNLGAKPLVIQLPIGSEDNFKGVIDLVRNKA 273
Score = 66.3 bits (159), Expect = 7e-10
Identities = 61/277 (22%), Positives = 112/277 (40%), Gaps = 34/277 (12%)
Query: 145 EVVDEVLELFIELGADDEQLDFPVVYASAINGSS-SMSDNPADQEHTMANIFDTIIDHIP 203
E D+ +E ++E DE+ ++ I+ S + A + + + D ++D++P
Sbjct: 311 EFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLP 370
Query: 204 GPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
P+D + DEP + + + + G
Sbjct: 371 SPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLGAG- 429
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVE 303
S L+ G K R+ +L R +++ A AGD+IAL+G++D GET+ D+
Sbjct: 430 SYVLNANKG--KKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITGETLCDPDNPI 487
Query: 304 PLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDK 363
L + +P +++ K+ L+ Q D S E ++
Sbjct: 488 VLERMDFPDPVIKVAIEPKTK---------ADVDKMATGLIKLAQEDPSFHFSRDEEINQ 538
Query: 364 WVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
V+ G GELHL I+++ ++RE E V P+V +E
Sbjct: 539 TVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 575
gi|1470078 (U58986) tetracyline resistance gene Tet(M) [Gardnerella vaginalis]
Length = 639
Score = 99.8 bits (245), Expect = 5e-20
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ V+AHVD GKTTL + LL S + + D+ LE++RGITI T+
Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
++ T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + +
Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLE 152
I +NKID+ + V ++ E
Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKE 146
gi|1470076 (U58985) tetracyline resistance gene Tet(M) [Gardnerella vaginalis]
Length = 639
Score = 99.8 bits (245), Expect = 5e-20
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ V+AHVD GKTTL + LL S + + D+ LE++RGITI T+
Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
++ T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + +
Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLE 152
I +NKID+ + V ++ E
Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKE 146
sp|Q54807|TETM_STRPN TETRACYCLINE RESISTANCE PROTEIN TETM FROM TRANSPOSON TN5251
(TET(M)) >gi|975710|emb|CAA62436| (X90939) tetM protein
[Streptococcus pneumoniae]
Length = 639
Score = 99.8 bits (245), Expect = 5e-20
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ V+AHVD GKTTL + LL S + + D+ LE++RGITI T+
Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
++ T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + +
Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLE 152
I +NKID+ + V ++ E
Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKE 146
sp|P34811|EFGC_SOYBN ELONGATION FACTOR G, CHLOROPLAST PRECURSOR (EF-G)
Length = 788
Score = 99.8 bits (245), Expect = 5e-20
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 5/179 (2%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 99 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 158
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T +N RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A +
Sbjct: 159 TTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 218
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+ I VNK+D+ A D ++ LGA + P+ G + N A
Sbjct: 219 VPRICFVNKMDRLGANFYRTRDMIV---TNLGAKPLVIQLPIGSEDNFKGVIDLVRNKA 274
Score = 66.3 bits (159), Expect = 7e-10
Identities = 61/277 (22%), Positives = 112/277 (40%), Gaps = 34/277 (12%)
Query: 145 EVVDEVLELFIELGADDEQLDFPVVYASAINGSS-SMSDNPADQEHTMANIFDTIIDHIP 203
E D+ +E ++E DE+ ++ I+ S + A + + + D ++D++P
Sbjct: 312 EFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLP 371
Query: 204 GPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
P+D + DEP + + + + G
Sbjct: 372 SPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLGAG- 430
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVE 303
S L+ G K R+ +L R +++ A AGD+IAL+G++D GET+ D+
Sbjct: 431 SYVLNANKG--KKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITGETLCDPDNPI 488
Query: 304 PLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDK 363
L + +P +++ K+ L+ Q D S E ++
Sbjct: 489 VLERMDFPDPVIKVAIEPKTK---------ADVDKMATGLIKLAQEDPSFHFSRDEEINQ 539
Query: 364 WVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
V+ G GELHL I+++ ++RE E V P+V +E
Sbjct: 540 TVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 576
ref|NP_001952.1|| eukaryotic translation elongation factor 2
>gi|119172|sp|P13639|EF2_HUMAN ELONGATION FACTOR 2
(EF-2) >gi|2144947|pir||EFHU2 translation elongation
factor eEF-2 - human >gi|31106|emb|CAA35829| (X51466)
elongation factor 2 [Homo sapiens]
>gi|31108|emb|CAA77750| (Z11692) human elongation
factor 2 [Homo sapiens]
Length = 858
Score = 99.8 bits (245), Expect = 5e-20
Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 16/147 (10%)
Query: 8 REDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
+ +IRN++VIAHVDHGK+TL D L+ ++ + + + R D+ EQER ITI +
Sbjct: 16 KANIRNMSVIAHVDHGKSTLTDSLVCKAGIIASARAGETRFTDTRKDEQERCITIKSTAI 75
Query: 68 AVEYN----------------GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGT 111
++ Y G IN++D+PGH DF EV +++ DG ++VVD G
Sbjct: 76 SLFYELSENDLNFIKQSKDGAGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGV 135
Query: 112 MPQTRFVLKKALEQNLTPIVVVNKIDK 138
QT VL++A+ + + P++++NK+D+
Sbjct: 136 CVQTETVLRQAIAERIKPVLMMNKMDR 162
emb|CAA50573| (X71439) translation elongation factor EF-G [Glycine max]
Length = 703
Score = 99.8 bits (245), Expect = 5e-20
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 5/179 (2%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 14 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 73
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T +N RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A +
Sbjct: 74 TTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 133
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+ I VNK+D+ A D ++ LGA + P+ G + N A
Sbjct: 134 VPRICFVNKMDRLGANFYRTRDMIV---TNLGAKPLVIQLPIGSEDNFKGVIDLVRNKA 189
Score = 66.3 bits (159), Expect = 7e-10
Identities = 61/277 (22%), Positives = 112/277 (40%), Gaps = 34/277 (12%)
Query: 145 EVVDEVLELFIELGADDEQLDFPVVYASAINGSS-SMSDNPADQEHTMANIFDTIIDHIP 203
E D+ +E ++E DE+ ++ I+ S + A + + + D ++D++P
Sbjct: 227 EFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLP 286
Query: 204 GPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
P+D + DEP + + + + G
Sbjct: 287 SPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLGAG- 345
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVE 303
S L+ G K R+ +L R +++ A AGD+IAL+G++D GET+ D+
Sbjct: 346 SYVLNANKG--KKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITGETLCDPDNPI 403
Query: 304 PLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDK 363
L + +P +++ K+ L+ Q D S E ++
Sbjct: 404 VLERMDFPDPVIKVAIEPKTK---------ADVDKMATGLIKLAQEDPSFHFSRDEEINQ 454
Query: 364 WVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
V+ G GELHL I+++ ++RE E V P+V +E
Sbjct: 455 TVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRE 491
pir||S44896 ZK1236.1 protein - Caenorhabditis elegans >gi|289752 (L13200)
homology with E.coli lepA protein; putative
[Caenorhabditis elegans]
Length = 581
Score = 99.8 bits (245), Expect = 5e-20
Identities = 109/476 (22%), Positives = 198/476 (40%), Gaps = 74/476 (15%)
Query: 46 ERAMDSNALEQERGITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVV 105
++ +D +E+ERGIT+ A+ A+ + G +N++DTPGH DF EV R + + DG++L+V
Sbjct: 10 KQMLDKLQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLV 69
Query: 106 DAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLD 165
A +G QT A E+N+ I V+NKID P A V ++ LF E ++
Sbjct: 70 AANQGVQAQTIANFWLAFEKNIQIIPVINKIDLPGADIKSVETQLKNLF-EFNPEE---- 124
Query: 166 FPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDY 225
++ SA +G + + + + IID +P P D P + + ++ +
Sbjct: 125 --CLHISAKSGLN------------VDKVLEAIIDRVPAPTAIIDAPFRSMIFDSYFDHF 170
Query: 226 XXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----L 281
++K GD + + + K + V+++ G + + E +AG +
Sbjct: 171 RGAIAHIMVKEGSVKKGDKIQSYQ---NEKVYDVSEV-GVMRPEMVKCTELRAGQVGYLV 226
Query: 282 IALSGMEDIFVGETV----TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSR 337
+ + + VGET+ T D V+ + +PT+ F + + +
Sbjct: 227 CNMRTVNEAVVGETLFAETTSRDSVKTFAEIKGVKPTVYAGL------FPVETSDYESLK 280
Query: 338 KVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHLSIL-------------------- 377
+ ERL + + + W + G LH+ +
Sbjct: 281 QAVERLCLNDPSVTVIPDSSKALGLGWRIGFLGVLHMEVFGARLSQEYDASVILCQPSVE 340
Query: 378 -------IETMRREGY----ELQVSRPEVIIKEID-GVACEPFERVQIDTPEEYQGSIIQ 425
ET+R++ Y E+++ P E D EP +V++ P E G++
Sbjct: 341 YRAKIKDNETIRKKRYDGMEEIRILDPSKFPDESDVDSFLEPMVKVRMIVPNEMMGTVNG 400
Query: 426 ALSERKGDMLDMQITGNGQARLIFL--VP-ARGLIGFTTEFMSMTRGYGIMNHTFD 478
SE +G+ +IT RL+ L +P A + F +T GY ++ D
Sbjct: 401 LCSECRGER--GEITSIDSTRLVILWRLPLAEVAVDFFERLKKLTSGYASFDYEPD 454
sp|P13550|EFG_SPIPL ELONGATION FACTOR G (EF-G) >gi|79738|pir||S04390 translation
elongation factor G - Spirulina platensis
>gi|581727|emb|CAA33672| (X15646) translation elongation
factor EF-G (AA 1-697) [Spirulina platensis]
Length = 697
Score = 99.8 bits (245), Expect = 5e-20
Identities = 69/205 (33%), Positives = 105/205 (50%), Gaps = 11/205 (5%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
E +RN+ + AH+D GKTT + +L S + E+ E D A E+ERGITI A
Sbjct: 8 ERVRNIGIAAHIDAGKTTTTERILFYSGVVHKMGEVHEGTAVTDWMAQERERGITITAAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+ + RINI+DTPGH DF EVER M+++DGV+ V + G PQ+ V ++A
Sbjct: 68 ISTSWLDHRINIIDTPGHVDFTIEVERSMRVLDGVIAVFCSVGGVQPQSETVWRQAERYQ 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
+ I +NK+D+ A +V ++ + L A+ + PV S +G + D A
Sbjct: 128 VPRIAFINKMDRTGADFFKVYGQIRD---RLRANAVPIQVPVGRESDFHG---LVDLVAM 181
Query: 187 QEHTMANIFDT---IIDHIPGPVDN 208
+ + N T + D IP V +
Sbjct: 182 KTYLYTNDLGTDIQVSDEIPEEVQD 206
Score = 63.2 bits (151), Expect = 6e-09
Identities = 42/146 (28%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K R+++L +R E++E +AGDL A G++D G+T+ + L L+I EP
Sbjct: 350 KKERISRLIVLKSDERIEVEELRAGDLGAALGLKDTLTGDTICDEANSIILESLYIPEPV 409
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + K+ + L S + D + RV ++ V++G GELHL
Sbjct: 410 ISVAVEPKTKQ---------DMEKLSKALQSLSEEDPTFRVSIDSETNQTVIAGMGELHL 460
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
IL++ M RE E + P+V +E
Sbjct: 461 EILVDRMLREFKVEANIGAPQVAYRE 486
Score = 50.0 bits (117), Expect = 6e-05
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQ--ARLIFLVPARGLIGFT 460
V EP +V+++ PE++ G++I L+ R+G ++ Q T Q A+++ VP + G+
Sbjct: 601 VLLEPMMKVEVEVPEDFIGNVIGDLNSRRG-QIEGQETDQSQSIAKVVAKVPLATMFGYA 659
Query: 461 TEFMSMTRGYGIMNHTFDQY 480
T+ S T+G G+ + F Y
Sbjct: 660 TDIRSKTQGRGVFSMEFSHY 679
sp|P21598|TET9_ENTFA TETRACYCLINE RESISTANCE PROTEIN TETM FROM TRANSPOSON TN916
(TETM(916)) >gi|97920|pir||S13142 tetracycline
resistance protein tetM - Enterococcus faecalis
transposon Tn916 >gi|47062|emb|CAA39796| (X56353)
tetracycline (M) [Enterococcus faecalis] >gi|1277146
(U50983) tetracyclin-resistance protein [Cloning vector
pFW16]
Length = 639
Score = 99.8 bits (245), Expect = 5e-20
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLD--ARKELAERAMDSNALEQERGITILAKNTA 68
I N+ V+AHVD GKTTL + LL S + + D+ LE++RGITI T+
Sbjct: 3 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITS 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
++ T++NI+DTPGH DF EV R + ++DG +L++ A +G QTR + + +
Sbjct: 63 FQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLE 152
I +NKID+ + V ++ E
Sbjct: 123 TIFFINKIDQNGIDLSTVYQDIKE 146
emb|CAA63548| (X92971) translocation elongation factor [Saccharomyces cerevisiae]
Length = 1110
Score = 99.5 bits (244), Expect = 7e-20
Identities = 59/180 (32%), Positives = 94/180 (51%), Gaps = 25/180 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN+ ++AHVDHGKT+L D LL + + R R +D+ EQ RGIT+ + ++
Sbjct: 19 IRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLY 78
Query: 71 YNGTR--------------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
+ R +N++D+PGH DF EV ++ DG V++VD EG QT
Sbjct: 79 FRVLRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDGAVVLVDVVEGVCSQTV 138
Query: 117 FVLKKALEQNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQLD 165
VL++ + L PI+V+NKID+ ++V+++V + A++ QLD
Sbjct: 139 TVLRQCWTEKLKPILVLNKIDRLITELQLTPQEAYIHLSKVIEQVNSVIGSFFANERQLD 198
ref|NP_014236.1|YNL163C| Ynl163cp >gi|1730796|sp|P53893|YNQ3_YEAST HYPOTHETICAL 124.5 KD
PROTEIN IN SKO1-RPL44A INTERGENIC REGION
>gi|2132760|pir||S60964 probable membrane protein
YNL163c - yeast (Saccharomyces cerevisiae)
>gi|1050790|emb|CAA63276| (X92517) N1718 [Saccharomyces
cerevisiae] >gi|1302132|emb|CAA96050| (Z71439) ORF
YNL163c [Saccharomyces cerevisiae]
Length = 1110
Score = 99.5 bits (244), Expect = 7e-20
Identities = 59/180 (32%), Positives = 94/180 (51%), Gaps = 25/180 (13%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
IRN+ ++AHVDHGKT+L D LL + + R R +D+ EQ RGIT+ + ++
Sbjct: 19 IRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLY 78
Query: 71 YNGTR--------------INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
+ R +N++D+PGH DF EV ++ DG V++VD EG QT
Sbjct: 79 FRVLRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDGAVVLVDVVEGVCSQTV 138
Query: 117 FVLKKALEQNLTPIVVVNKIDK-----------PSARPAEVVDEVLELFIELGADDEQLD 165
VL++ + L PI+V+NKID+ ++V+++V + A++ QLD
Sbjct: 139 TVLRQCWTEKLKPILVLNKIDRLITELQLTPQEAYIHLSKVIEQVNSVIGSFFANERQLD 198
bbs|57690 (S57688) EF-G=elongation factor G [Thermotoga maritima, Peptide,
682 aa] [Thermotoga maritima]
Length = 682
Score = 99.5 bits (244), Expect = 7e-20
Identities = 54/139 (38%), Positives = 80/139 (56%), Gaps = 10/139 (7%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNAL------EQERGITI 62
+ +RN+ ++AH+D GKTT + +L + RK + N E+ERGITI
Sbjct: 12 DKLRNIGIMAHIDAGKTTTTERILYYT----GRKHFIGDVDEGNTTTDWMPQEKERGITI 67
Query: 63 LAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ T + G RINI+DTPGH DF EVER ++++DG + V DA G PQ+ V ++A
Sbjct: 68 QSAATTCFWKGYRINIIDTPGHVDFTAEVERALRVLDGAIRVFDATAGVEPQSETVWRQA 127
Query: 123 LEQNLTPIVVVNKIDKPSA 141
+ N+ I +NK+DK A
Sbjct: 128 DKYNVPRIAFMNKMDKVGA 146
Score = 61.3 bits (146), Expect = 2e-08
Identities = 61/278 (21%), Positives = 124/278 (43%), Gaps = 35/278 (12%)
Query: 144 AEVVDEVLELFIELGAD--DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDH 201
AE+ +E+LE ++E GA+ +E++ + A+ N + + A + + D +ID+
Sbjct: 223 AELDEEILEKYLE-GAEISEEEIKRVLRKATIENKAVPVLCGAAKANKGIQPLLDAVIDY 281
Query: 202 IPGPVD-------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
+P P+D + +EP V + + Y ++ G
Sbjct: 282 LPSPLDLPPVKGWRVSDGEVVYRKPDENEPFTALVFKVQVDPYIGKLVYFRVYSGRLEKG 341
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHV 302
V S + R++++ R+E+ + GD+ A G++ G+T+
Sbjct: 342 SYVYNST---KGQRERISRIVFMHADKREEVDYFRPGDIAAGVGLKVSQTGDTLWHEK-- 396
Query: 303 EPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPD 362
EP+ + ID P ++ A E K+ + L++ + D +L+V +
Sbjct: 397 EPIILEKIDFPEPVISLAVEPVTKADEE-------KLVKALLALSEEDPTLQVRVDKETG 449
Query: 363 KWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL I+++ ++RE G ++V +P+V +E
Sbjct: 450 ETIISGMGELHLEIVVDRLKREFGVNVRVGQPQVAYRE 487
Score = 44.5 bits (103), Expect = 0.002
Identities = 24/84 (28%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+K+ V EP +++I TPEEY G+II L+ R+ + ++ G+ + ++ VP
Sbjct: 585 MKKAQPVLLEPIMKLEITTPEEYMGNIISDLNSRRAKVESLETRGHLKV-IVAKVPLSET 643
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T S+++G F Y
Sbjct: 644 FGYATVLRSLSQGRASYIMQFSHY 667
sp|P18667|EFG_ANANI ELONGATION FACTOR G (EF-G) >gi|79627|pir||S04429 translation
elongation factor G - Synechococcus sp
>gi|1405432|emb|CAA35495| (X17442) fus [Synechococcus
PCC6301]
Length = 694
Score = 99.1 bits (243), Expect = 9e-20
Identities = 64/201 (31%), Positives = 106/201 (51%), Gaps = 17/201 (8%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQER--GITILAKN 66
E +RN+ + AH+D GKTT + +L S + E+ + ++ +EQER GITI A
Sbjct: 8 EKVRNIGIAAHIDAGKTTTTERILFYSGVVHKIGEVHDGNAVTDWMEQERERGITITAAA 67
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
+ + R+NI+DTPGH DF EVER M+++DGVV V + G PQ+ V ++A +
Sbjct: 68 ISTSWKDYRVNIIDTPGHVDFTIEVERSMRVLDGVVAVFCSVGGVQPQSETVWRQADRYS 127
Query: 127 LTPIVVVNKIDKPSARPAEVVDEV--------LELFIELGADDEQLDF-------PVVYA 171
+ IV VNK+D+ A +V ++ + + I +GA+ + +Y
Sbjct: 128 VPRIVFVNKMDRTGADFFKVYGQIRDRVRANAVPIQIPIGAESDFQGIVDLVEMKAHIYT 187
Query: 172 SAINGSSSMSDNPADQEHTMA 192
+ + ++D PA+ + T A
Sbjct: 188 NDLGTDILVTDIPAELQETAA 208
Score = 64.4 bits (154), Expect = 3e-09
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K RV++L DR E+ E +AGDL A+ G++D F G+T+ + L L I EP
Sbjct: 348 KKERVSRLIILKADDRIEVDELRAGDLGAVLGLKDTFTGDTLCDDQNPIILESLFIPEPV 407
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + K+ + L + + D + RV ++ V++G GELHL
Sbjct: 408 ISVAVEPKTKN---------DMEKLSKALQALSEEDPTFRVSVDSETNQTVIAGMGELHL 458
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
IL++ M RE E + P+V +E
Sbjct: 459 EILVDRMLREYKVEANIGAPQVAYRE 484
Score = 61.3 bits (146), Expect = 2e-08
Identities = 30/84 (35%), Positives = 49/84 (57%), Gaps = 1/84 (1%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGL 456
+++ D V EP +V+++ PE++ GS++ L R+G ++ Q T NG A + VP +
Sbjct: 593 VRKADPVLLEPVMKVEVEVPEDFLGSVMGNLISRRGQ-IEGQATTNGTATVSAKVPLAEM 651
Query: 457 IGFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ SMT+G GI F QY
Sbjct: 652 FGYATDLRSMTQGRGIFTMEFSQY 675
gb|AAD16059| (AF087414) elongation factor G [Haemophilus ducreyi]
Length = 209
Score = 98.7 bits (242), Expect = 1e-19
Identities = 62/167 (37%), Positives = 92/167 (54%), Gaps = 17/167 (10%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVSHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT-------RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
++G RIN++DTPGH DF EVER M+++DG V+V A G PQ+ V ++A
Sbjct: 71 FWSGMSQQYQQHRINVIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDE--------VLELFIELGADD 161
+ + I VNK+D+ A VV++ V+ L + +GA+D
Sbjct: 131 NKYGVPRIAFVNKMDRTGANFLRVVEQIKTRLGGNVVALQLPIGAED 177
gb|AAF19548.1|AC007190_16 (AC007190) F23N19.11 [Arabidopsis thaliana]
Length = 783
Score = 98.3 bits (241), Expect = 2e-19
Identities = 60/163 (36%), Positives = 90/163 (54%), Gaps = 10/163 (6%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 153
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T ++ RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A +
Sbjct: 154 TTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYG 213
Query: 127 LTPIVVVNKIDKPSARPAEVVDEV--------LELFIELGADD 161
+ I VNK+D+ A D + L L I +GA+D
Sbjct: 214 VPRICFVNKMDRLGANFFRTRDMIVTNLGAKPLVLQIPIGAED 256
Score = 68.7 bits (165), Expect = 1e-10
Identities = 59/271 (21%), Positives = 113/271 (40%), Gaps = 28/271 (10%)
Query: 148 DEVLELFIELGADDEQLDFPVVYASAINGSS-SMSDNPADQEHTMANIFDTIIDHIPGPV 206
DEV+E ++E DE +V I G + A + + + D ++D++P PV
Sbjct: 310 DEVMENYLEGVEPDEATVKRLVRKGTITGKFVPILCGSAFKNKGVQPLLDAVVDYLPSPV 369
Query: 207 D----NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGST-------- 254
+ N +P +++++ D + S+T ++
Sbjct: 370 EVPPMNGTDPENPEITIIRKPDDDEPFAGLAFKIMSDPFVGSLTFVRVYSGKISAGSYVL 429
Query: 255 -----KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILH 309
K R+ +L R++++ A GD+IAL+G++D GET++ ++ L +
Sbjct: 430 NANKGKKERIGRLLEMHANSREDVKVALTGDIIALAGLKDTITGETLSDPENPVVLERMD 489
Query: 310 IDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGR 369
+P +++ K+ L+ Q D S E ++ V+ G
Sbjct: 490 FPDPVIKVAIEPKTK---------ADIDKMATGLIKLAQEDPSFHFSRDEEMNQTVIEGM 540
Query: 370 GELHLSILIETMRRE-GYELQVSRPEVIIKE 399
GELHL I+++ ++RE E V P+V +E
Sbjct: 541 GELHLEIIVDRLKREFKVEANVGAPQVNYRE 571
gb|AAC67915.1| (AE001305) Elongation Factor Tu [Chlamydia trachomatis]
Length = 394
Score = 98.3 bits (241), Expect = 2e-19
Identities = 86/297 (28%), Positives = 129/297 (42%), Gaps = 14/297 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + ++D+ E+ RGITI A + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITRALSGDGLADFRDYSSIDNTPEEKARGITINASHVEYETA 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQT+ + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTM 191
+NKID S AE+VD V +EL + P++ SA+ + A +
Sbjct: 134 FLNKIDMISEEDAELVDLVEMELVELLEEKGYKGCPIIRGSALKA----LEGDAAYIEKV 189
Query: 192 ANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLD 251
+ + D+IP P D+P + + +KV D V L L
Sbjct: 190 RELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGL- 248
Query: 252 GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
TK VT + F R+E+ E +AG+ + L G D+ G V + V+P
Sbjct: 249 RDTKETIVTGVEMF----RKELPEGRAGENVGLLLRGIGKNDVERGMVVCLPNSVKP 301
sp|P70782|EFG_AGRTU ELONGATION FACTOR G (EF-G) >gi|1666547|emb|CAA67990| (X99673)
elongation factor EF-G [Agrobacterium tumefaciens]
Length = 699
Score = 98.3 bits (241), Expect = 2e-19
Identities = 56/140 (40%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
ED RN ++AH+D GKTT + +L + E+ + A MD EQERGITI
Sbjct: 8 EDYRNFGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITTAA 67
Query: 67 TAVEYNGT-----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
T + G R NI+DTPGH DF EVER ++++DG + ++DA G PQT V ++
Sbjct: 68 TTTFWKGRDGKMRRFNIIDTPGHVDFTIEVERSLRVLDGAIALLDANAGVEPQTETVWRQ 127
Query: 122 ALEQNLTPIVVVNKIDKPSA 141
A + N+ ++ NK+DK A
Sbjct: 128 AEKYNVPRMIFCNKMDKTGA 147
Score = 43.8 bits (101), Expect = 0.004
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFL----VPARGLIGFTT 461
EP +V++ TPE+Y G +I L+ R+G QI G + + VP + +
Sbjct: 607 EPMMKVEVVTPEDYVGDVIGDLNSRRG-----QIQGQESRGITIVISAHVPLANMFKYVD 661
Query: 462 EFMSMTRGYGIMNHTFDQYLPA---VKGEIGGRHRG 494
SM++G + TFD Y P V EI ++ G
Sbjct: 662 NLRSMSQGRAQYSMTFDHYSPVPSNVAQEIQAKYSG 697
sp|P46211|EFG_AQUPY ELONGATION FACTOR G (EF-G) >gi|642967|emb|CAA52336| (X74277)
elongation factor G [Aquifex pyrophilus]
Length = 700
Score = 98.3 bits (241), Expect = 2e-19
Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 15/168 (8%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E +RN+ ++AH+D GKTT + + + + E+ E A MD E+ERGITI A
Sbjct: 8 EKLRNIGIVAHIDAGKTTTTERIPTTGKDIQIG-EVTEGAATMDWMPQEKERGITITAAT 66
Query: 67 TAVEY--NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
TA + NG R INI+DTPGH DF EV R MK++DG+V + A EG PQ+ + A
Sbjct: 67 TACYWTRNGERYQINIIDTPGHVDFSVEVVRSMKVLDGIVFIFSAVEGVQPQSEANWRWA 126
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLE--------LFIELGADDE 162
+ I +NK+D+ A V E+ E + I LGA+D+
Sbjct: 127 DRFKVPRIAFINKMDRLGADFYRVFKEIEEKLTIKPVAIQIPLGAEDQ 174
Score = 72.2 bits (174), Expect = 1e-11
Identities = 86/365 (23%), Positives = 150/365 (40%), Gaps = 66/365 (18%)
Query: 53 ALEQERGITILAKNTAVEYN----GTRINILDTP-GHADFGGE-----VERIMKMVDGVV 102
A +Q G+ L + A+ + G + ++D P G+ + E +E I++ D ++
Sbjct: 171 AEDQFEGVIDLMEMKAIRWLEVTLGAKYEVIDIPPGYQEKAQEWREKMIETIVETDDELM 230
Query: 103 -LVVDAYEGTMPQTRFVLKKA-LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD 160
++A E T+ + R L+KA + + L P++ + +P ++D V+ +
Sbjct: 231 EKYLEAQEITLEELRKALRKATINRQLVPVLCGSAFKNKGVQP--LLDAVIVTY------ 282
Query: 161 DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLL 220
+D P V + N P D+E A F + D
Sbjct: 283 PLPIDLPPVKGTNPNTGEEEERRPLDEEPFCAYAFKVMAD-------------------- 322
Query: 221 DYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
Y T+K G V + D + R +L R+EIQ+ AG+
Sbjct: 323 ---PYAGQLTYIRVFSGTLKAGSYVYNATRD---EKQRAGRLLLMHANSREEIQQVSAGE 376
Query: 281 LIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVE 340
+ A+ G+ D G+T+ H L L +P + M E K ++K +
Sbjct: 377 ICAVVGL-DAATGDTLCDEKHPIILEKLEFPDPVISMAI----------EPK---TKKDQ 422
Query: 341 ERL-----VSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPE 394
E+L +S L+ D + R + ++ G GELHL I+++ MRRE G E+ V +P+
Sbjct: 423 EKLSQVLNLSSLKEDPTFRATTDPETGQILIHGMGELHLEIMVDRMRREYGIEVNVGKPQ 482
Query: 395 VIIKE 399
V KE
Sbjct: 483 VAYKE 487
Score = 51.2 bits (120), Expect = 2e-05
Identities = 28/88 (31%), Positives = 44/88 (49%), Gaps = 1/88 (1%)
Query: 393 PEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP 452
P + D V EP V+++TPE+Y G +I L+ R+G ++ M+ GN + VP
Sbjct: 593 PRTRQRTADPVLLEPIMEVEVETPEDYVGDVIGDLNSRRGTIMGMENKGNITV-VKAHVP 651
Query: 453 ARGLIGFTTEFMSMTRGYGIMNHTFDQY 480
+ G+ T S+T+G G F Y
Sbjct: 652 LAEMFGYATTLRSLTQGRGTFIMRFSHY 679
pir||EFECG translation elongation factor EF-G - Escherichia coli
Length = 702
Score = 97.5 bits (239), Expect = 3e-19
Identities = 59/148 (39%), Positives = 85/148 (56%), Gaps = 9/148 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNT-- 67
RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 68 -----AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
A +Y RINI+DTPGH DF EVER M+++DG V+V A G PQ+ V ++A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEV 150
+ + I VNK+D+ A +VV+++
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLKVVNQI 158
Score = 68.7 bits (165), Expect = 1e-10
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 30/224 (13%)
Query: 194 IFDTIIDHIPGPVD-----------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXX 236
+ D +ID++P PVD + DEP + + +
Sbjct: 278 MLDAVIDYLPSPVDVPAIDCILKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYS 337
Query: 237 XTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETV 296
+ GD+V L+ + + + F ++ R+EI+E +AGD+ A G++D+ G+ +
Sbjct: 338 GVVNSGDTV-LNSVKAARERFG--RIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDCL 394
Query: 297 TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
D L + EP + + + G + RL E D S RV
Sbjct: 395 CDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALG------RLAKE---DPSFRVW 445
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E ++ +++G GELHL I+++ M+RE E V +P+V +E
Sbjct: 446 TDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRE 489
prf||0905186A elongation factor G [Escherichia coli]
Length = 701
Score = 97.5 bits (239), Expect = 3e-19
Identities = 59/148 (39%), Positives = 85/148 (56%), Gaps = 9/148 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNT-- 67
RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 10 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 69
Query: 68 -----AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
A +Y RINI+DTPGH DF EVER M+++DG V+V A G PQ+ V ++A
Sbjct: 70 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 129
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEV 150
+ + I VNK+D+ A +VV+++
Sbjct: 130 NKYKVPRIAFVNKMDRMGANFLKVVNQI 157
Score = 68.7 bits (165), Expect = 1e-10
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 30/224 (13%)
Query: 194 IFDTIIDHIPGPVD-----------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXX 236
+ D +ID++P PVD + DEP + + +
Sbjct: 277 MLDAVIDYLPSPVDVPAIDCILKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFRVYS 336
Query: 237 XTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETV 296
+ GD+V L+ + + + F ++ R+EI+E +AGD+ A G++D+ G+ +
Sbjct: 337 GVVNSGDTV-LNSVKAARERFG--RIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDCL 393
Query: 297 TPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE 356
D L + EP + + + G + RL E D S RV
Sbjct: 394 CDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALG------RLAKE---DPSFRVW 444
Query: 357 NTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
E ++ +++G GELHL I+++ M+RE E V +P+V +E
Sbjct: 445 TDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRE 488
sp|P02996|EFG_ECOLI ELONGATION FACTOR G (EF-G) >gi|41517|emb|CAA25120| (X00415)
elongation factor G [Escherichia coli]
>gi|606274|gb|AAA58137.1| (U18997) CG Site No. 732;
alternate name far [Escherichia coli] >gi|1789738
(AE000410) GTP-binding protein chain elongation factor
EF-G [Escherichia coli]
Length = 704
Score = 97.5 bits (239), Expect = 3e-19
Identities = 59/148 (39%), Positives = 85/148 (56%), Gaps = 9/148 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNT-- 67
RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 68 -----AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
A +Y RINI+DTPGH DF EVER M+++DG V+V A G PQ+ V ++A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEV 150
+ + I VNK+D+ A +VV+++
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLKVVNQI 158
Score = 69.9 bits (168), Expect = 6e-11
Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 33/227 (14%)
Query: 194 IFDTIIDHIPGPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXX 233
+ D +ID++P PVD + DEP + + +
Sbjct: 278 MLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFR 337
Query: 234 XXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVG 293
+ GD+V L+ + + + F ++ R+EI+E +AGD+ A G++D+ G
Sbjct: 338 VYSGVVNSGDTV-LNSVKAARERFG--RIVQMHANKREEIKEVRAGDIAAAIGLKDVTTG 394
Query: 294 ETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSL 353
+T+ D L + EP + + + G + RL E D S
Sbjct: 395 DTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALG------RLAKE---DPSF 445
Query: 354 RVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
RV E ++ +++G GELHL I+++ M+RE E V +P+V +E
Sbjct: 446 RVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRE 492
Score = 44.9 bits (104), Expect = 0.002
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI 457
K+ V EP +V+++TPEE G +I LS R+G ML Q + ++ VP +
Sbjct: 606 KKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRG-MLKGQESEVTGVKIHAEVPLSEMF 664
Query: 458 GFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ S+T+G F +Y
Sbjct: 665 GYATQLRSLTKGRASYTMEFLKY 687
gb|AAD32833.1|AC007659_15 (AC007659) putative mitochondrial translation elongation factor G
[Arabidopsis thaliana]
Length = 754
Score = 97.1 bits (238), Expect = 4e-19
Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 26/231 (11%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITIL 63
+ +RN+ + AH+D GKTTL + +L + + E+ R MDS LE+E+GITI
Sbjct: 63 DKLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQ 122
Query: 64 AKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
+ T + ++NI+DTPGH DF EVER ++++DG +LV+ + G Q+ V ++
Sbjct: 123 SAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMR 182
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEV--------LELFIELGADDE---QLDFPVVYAS 172
+ + +NK+D+ A P +V+++ + + +G ++ +D V A
Sbjct: 183 RYEVPRVAFINKLDRMGADPWKVLNQARAKLRHHSAAVQVPIGLEENFQGLIDLIHVKAY 242
Query: 173 AINGSSS----MSDNPADQEHTMAN----IFDTI--IDHIPGPVDNSDEPL 213
+GSS D PAD E + + + +T+ +D + +DEP+
Sbjct: 243 FFHGSSGENVVAGDIPADMEGLVGDKRRELIETVSEVDDVLAEKFLNDEPV 293
Score = 57.4 bits (136), Expect = 3e-07
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K +V +L D ++IQEA AG ++A+ G+E G+T T + +++ EP
Sbjct: 404 KRIKVPRLVRMHSNDMEDIQEAHAGQIVAVFGIE-CASGDTFTDGSVKYTMTSMNVPEPV 462
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + + G+ K + + E D + RV + ++SG GELHL
Sbjct: 463 MSLAVQPVSKDSGGQFSKALNRFQKE---------DPTFRVGLDPESGQTIISGMGELHL 513
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
I +E MRRE + V +P V +E
Sbjct: 514 DIYVERMRREYKVDATVGKPRVNFRE 539
sp|P26229|EFG_SALTY ELONGATION FACTOR G (EF-G) >gi|321911|pir||JC1424 translation
elongation factor G - Salmonella typhimurium
>gi|47923|emb|CAA45880| (X64591) elongation factor G
[Salmonella typhimurium]
Length = 704
Score = 97.1 bits (238), Expect = 4e-19
Identities = 68/191 (35%), Positives = 98/191 (50%), Gaps = 18/191 (9%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNT-- 67
RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 68 -----AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
A +Y RINI+DTPGH DF EVER M+++DG V+V A G PQ+ V ++A
Sbjct: 71 FWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING------ 176
+ + I VNK+D+ A +VV ++ LGA+ L + G
Sbjct: 131 NKYKVPRIAFVNKMDRMGANFLKVVGQIK---TRLGANPVPLQLAIGAEEGFTGVVDLVK 187
Query: 177 SSSMSDNPADQ 187
+++ N ADQ
Sbjct: 188 MKAINWNDADQ 198
Score = 70.2 bits (169), Expect = 4e-11
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 33/227 (14%)
Query: 194 IFDTIIDHIPGPVD--------------------NSDEPLQFQVSLLDYNDYXXXXXXXX 233
+ D +ID++P PVD + DEP + + +
Sbjct: 278 MLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLTFFR 337
Query: 234 XXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVG 293
+ GD+V S T R ++ R+EI+E +AGD+ A G++D+ G
Sbjct: 338 VYSGVVNSGDTVLNSV---KTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTG 394
Query: 294 ETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSL 353
+T+ ++ L + EP + + + G + RL E D S
Sbjct: 395 DTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALG------RLAKE---DPSF 445
Query: 354 RVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
RV E ++ +++G GELHL I+++ M+RE E V +P+V +E
Sbjct: 446 RVWTDEESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRE 492
Score = 44.9 bits (104), Expect = 0.002
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI 457
K+ V EP +V+++TPEE G +I LS R+G ML Q + ++ VP +
Sbjct: 606 KKAKPVLLEPIMKVEVETPEENTGDVIGDLSRRRG-MLKGQESEVTGVKIHAEVPLSEMF 664
Query: 458 GFTTEFMSMTRGYGIMNHTFDQY 480
G+ T+ S+T+G F +Y
Sbjct: 665 GYATQLRSLTKGRASYTMEFLKY 687
emb|CAB52147.1| (AL109734) elongation factor 2 [Schizosaccharomyces pombe]
Length = 812
Score = 96.7 bits (237), Expect = 5e-19
Identities = 66/190 (34%), Positives = 101/190 (52%), Gaps = 39/190 (20%)
Query: 23 GKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEY----------- 71
GK+TL D L++++ + A K R MD+ A EQERG+TI K+TA+
Sbjct: 1 GKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTI--KSTAISLFAEMTDDDMKD 58
Query: 72 -----NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALE 124
+GT +N++D+PGH DF EV +++ DG ++VVD EG QT VL++AL
Sbjct: 59 MKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG 118
Query: 125 QNLTPIVVVNKIDKP--------------SARPAEVVDEVLELFIELGADDEQLDFP--- 167
+ + P+VVVNK+D+ AR E V+ V+ + + D Q+ FP
Sbjct: 119 ERIRPVVVVNKVDRALLELQISQEELYQNFARVVESVNVVISTYYDKVLGDCQV-FPDKG 177
Query: 168 -VVYASAING 176
V +AS ++G
Sbjct: 178 TVAFASGLHG 187
emb|CAA19260.1| (AL023704) elongation factor 2-like protein [Schizosaccharomyces
pombe]
Length = 1000
Score = 96.7 bits (237), Expect = 5e-19
Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 12/150 (8%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGI 60
++ L K +E+IRN ++AHVDHGKTTL D LL + + ++ R +D E RGI
Sbjct: 9 LVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGI 68
Query: 61 TILAKNTA-----VEYNGTR-------INILDTPGHADFGGEVERIMKMVDGVVLVVDAY 108
T+ + + + N + IN++D+PGH DF EV ++ DG ++VDA
Sbjct: 69 TMKSSAISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAV 128
Query: 109 EGTMPQTRFVLKKALEQNLTPIVVVNKIDK 138
EG QT VL++A + I+V+NK+D+
Sbjct: 129 EGVCSQTITVLRQAWIDRIKVILVINKMDR 158
sp|P16018|EF1A_HALMA ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (ELONGATION FACTOR TU)
(EF-TU) >gi|72874|pir||EFHST translation elongation
factor aEF-1 alpha chain - Haloarcula marismortui
>gi|43598|emb|CAA34665| (X16677) elongation factor Tu
(AA 1-421) [Haloarcula marismortui]
Length = 421
Score = 96.7 bits (237), Expect = 5e-19
Identities = 95/342 (27%), Positives = 149/342 (42%), Gaps = 55/342 (16%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQS-----QTLDARKELAER----------AMDSNA 53
E +N+A+I HVDHGK+TLV LL ++ ++ KE AE MD+ A
Sbjct: 4 EQHQNLAIIGHVDHGKSTLVGRLLYETGSVPEHVIEQHKEEAEEKGKGGFEFAYVMDNLA 63
Query: 54 LEQERGITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMP 113
E+ERG+TI + + I+D PGH DF + D VLVV A +G P
Sbjct: 64 EERERGVTIDIAHQEFSTDTYDFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVQP 123
Query: 114 QTRFVLKKALEQNLTPIVV-VNK---IDKPSARPAEVVDEVLELFIELGADDEQLDFPVV 169
QT+ + A + ++V VNK +D + +VV+EV +L ++ D E F +
Sbjct: 124 QTQEHVFLARTLGIGELIVAVNKMDLVDYGESEYKQVVEEVKDLLTQVRFDSENAKF--I 181
Query: 170 YASAINGSSSMSDNPADQ-EHT---MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDY 225
SA G DN A++ EHT I ++ +P P +D PL+ + +
Sbjct: 182 PVSAFEG-----DNIAEESEHTGWYDGEILLEALNELPAPEPPTDAPLRLPIQDVYTISG 236
Query: 226 XXXXXXXXXXXXTIKVGDSVTL--SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA 283
+ GD+V+ S + G K + +E+ +A+ GD +
Sbjct: 237 IGTVPVGRVETGILNTGDNVSFQPSDVSGEVKTVE---------MHHEEVPKAEPGDNVG 287
Query: 284 LS----GMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLA 321
+ G +DI G+ P+D D P++ TF A
Sbjct: 288 FNVRGVGKDDIRRGDVCGPAD----------DPPSVAETFQA 319
sp|P26622|EFTU_CHLTR ELONGATION FACTOR TU (EF-TU) >gi|1075492|pir||A49894 translation
elongation factor Tu - Chlamydia trachomatis >gi|431279
(L22216) elongation factor Tu [Chlamydia trachomatis]
Length = 394
Score = 96.7 bits (237), Expect = 5e-19
Identities = 86/297 (28%), Positives = 128/297 (42%), Gaps = 14/297 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + ++D+ E+ RGITI A + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITRALSGDGLADFRDYSSIDNTPEEKARGITINASHVEYETA 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQT+ + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTM 191
+NKID S AE+VD V EL + P++ SA+ + A +
Sbjct: 134 FLNKIDMISEEDAELVDLVEMELAELLEEKGYKGCPIIRGSALKA----LEGDAAYIEKV 189
Query: 192 ANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLD 251
+ + D+IP P D+P + + +KV D V L L
Sbjct: 190 RELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGL- 248
Query: 252 GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
TK VT + F R+E+ E +AG+ + L G D+ G V + V+P
Sbjct: 249 RDTKETIVTGVEMF----RKELPEGRAGENVGLLLRGIGKNDVERGMVVCLPNSVKP 301
emb|CAB75131.1| (AL139075) elongation factor G [Campylobacter jejuni]
Length = 691
Score = 96.3 bits (236), Expect = 6e-19
Identities = 62/171 (36%), Positives = 96/171 (55%), Gaps = 11/171 (6%)
Query: 1 MIKLTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQER 58
M + T L++ +RN+ + AH+D GKTT + +L + E+ + A MD E+ER
Sbjct: 1 MSRSTPLKK-VRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVHDGAATMDWMEQEKER 59
Query: 59 GITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFV 118
GITI + T + +IN++DTPGH DF EVER M+++DG V V + G PQ+ V
Sbjct: 60 GITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVAVFCSVGGVQPQSETV 119
Query: 119 LKKALEQNLTPIVVVNKIDKPSARPAEVVDEV--------LELFIELGADD 161
++A + + IV VNK+D+ A V D++ + L I +GA+D
Sbjct: 120 WRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPVPLQIPIGAED 170
Score = 57.4 bits (136), Expect = 3e-07
Identities = 39/146 (26%), Positives = 65/146 (43%), Gaps = 10/146 (6%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K R+ +L R+EI+ AG++ A+ G++D G+T+ L + +P
Sbjct: 347 KKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEKDKVILERMDFPDPV 406
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + K+ L Q D S RV E + ++SG GELHL
Sbjct: 407 ISVAVEPKTK---------ADQEKMSIALNKLAQEDPSFRVSTDEESGQTIISGMGELHL 457
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
I+++ M RE E +V +P+V +E
Sbjct: 458 EIIVDRMLREFKVEAEVGQPQVAYRE 483
Score = 52.3 bits (123), Expect = 1e-05
Identities = 25/83 (30%), Positives = 44/83 (52%), Gaps = 1/83 (1%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI 457
++ V EP +V+++TPE+Y G +I L++R+G + M G G + P +
Sbjct: 593 RKAGAVILEPMMKVEVETPEDYMGDVIGDLNKRRGQVNSMDERG-GNKIITAFCPLAEMF 651
Query: 458 GFTTEFMSMTRGYGIMNHTFDQY 480
G++T+ S T+G + FD Y
Sbjct: 652 GYSTDLRSQTQGRATYSMEFDHY 674
dbj|BAA88144.1| (AB035471) EF-G [Porphyromonas gingivalis]
Length = 707
Score = 96.3 bits (236), Expect = 6e-19
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+N +IN++DTPGH DF EVER ++++DG V A G PQ+ V ++A +
Sbjct: 71 FWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPQSETVWRQAEKY 130
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
N+ I VNK+D+ A EVV ++ E+ LGA+ + P+
Sbjct: 131 NVPRIGYVNKMDRSGANFFEVVRQLREV---LGANPCPIQIPI 170
Score = 57.4 bits (136), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (44%), Gaps = 10/148 (6%)
Query: 253 STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDE 312
S K R+++LF + + GD+ A G +DI G+T+ +H L + +
Sbjct: 352 SEKKERISRLFQMHSNKQNPKEVIGCGDIGAGVGFKDIRTGDTLCDENHPIVLESMDFPD 411
Query: 313 PTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGEL 372
P + + R G V K+ E D + RV+ E + V+SG GEL
Sbjct: 412 PVIGIAVEPKTQKDLDRLG--VGLAKLAEE-------DPTFRVQTNEDSGQTVISGMGEL 462
Query: 373 HLSILIETMRRE-GYELQVSRPEVIIKE 399
HL I+I+ +RRE E RP+V KE
Sbjct: 463 HLDIIIDRLRREFKVECNQGRPQVSYKE 490
Score = 44.9 bits (104), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP ++++ TPEE G +I L++R+G + M+ + G + VP + G+ T +
Sbjct: 610 EPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRT 669
Query: 466 MTRGYGIMNHTFDQY 480
+T G TF Y
Sbjct: 670 ITSGRATSTMTFSHY 684
dbj|BAA88142.1| (AB035469) EF-G [Porphyromonas gingivalis]
Length = 707
Score = 96.3 bits (236), Expect = 6e-19
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+N +IN++DTPGH DF EVER ++++DG V A G PQ+ V ++A +
Sbjct: 71 FWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPQSETVWRQAEKY 130
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
N+ I VNK+D+ A EVV ++ E+ LGA+ + P+
Sbjct: 131 NVPRIGYVNKMDRSGANFFEVVRQLREV---LGANPCPIQIPI 170
Score = 57.4 bits (136), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (44%), Gaps = 10/148 (6%)
Query: 253 STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDE 312
S K R+++LF + + GD+ A G +DI G+T+ +H L + +
Sbjct: 352 SEKKERISRLFQMHSNKQNPKEVIGCGDIGAGVGFKDIRTGDTLCDENHPIVLESMDFPD 411
Query: 313 PTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGEL 372
P + + R G V K+ E D + RV+ E + V+SG GEL
Sbjct: 412 PVIGIAVEPKTQKDLDRLG--VGLAKLAEE-------DPTFRVQTNEDSGQTVISGMGEL 462
Query: 373 HLSILIETMRRE-GYELQVSRPEVIIKE 399
HL I+I+ +RRE E RP+V KE
Sbjct: 463 HLDIIIDRLRREFKVECNQGRPQVSYKE 490
Score = 44.9 bits (104), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP ++++ TPEE G +I L++R+G + M+ + G + VP + G+ T +
Sbjct: 610 EPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRT 669
Query: 466 MTRGYGIMNHTFDQY 480
+T G TF Y
Sbjct: 670 ITSGRATSTMTFSHY 684
dbj|BAA88141.1| (AB035468) EF-G [Porphyromonas gingivalis]
Length = 707
Score = 96.3 bits (236), Expect = 6e-19
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+N +IN++DTPGH DF EVER ++++DG V A G PQ+ V ++A +
Sbjct: 71 FWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPQSETVWRQAEKY 130
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
N+ I VNK+D+ A EVV ++ E+ LGA+ + P+
Sbjct: 131 NVPRIGYVNKMDRSGANFFEVVRQLREV---LGANPCPIQIPI 170
Score = 57.0 bits (135), Expect = 4e-07
Identities = 44/148 (29%), Positives = 66/148 (43%), Gaps = 10/148 (6%)
Query: 253 STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDE 312
S K R+++LF + + GD+ A G +DI G+T+ H L + +
Sbjct: 352 SEKKERISRLFQMHSNKQNPKEVIGCGDIGAGVGFKDIRTGDTLCDESHPIVLESMDFPD 411
Query: 313 PTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGEL 372
P + + R G V K+ E D + RV+ E + V+SG GEL
Sbjct: 412 PVIGIAVEPKTQKDLDRLG--VGLAKLAEE-------DPTFRVQTNEDSGQTVISGMGEL 462
Query: 373 HLSILIETMRRE-GYELQVSRPEVIIKE 399
HL I+I+ +RRE E RP+V KE
Sbjct: 463 HLDIIIDRLRREFKVECNQGRPQVSYKE 490
Score = 44.9 bits (104), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP ++++ TPEE G +I L++R+G + M+ + G + VP + G+ T +
Sbjct: 610 EPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRT 669
Query: 466 MTRGYGIMNHTFDQY 480
+T G TF Y
Sbjct: 670 ITSGRATSTMTFSHY 684
dbj|BAA88140.1| (AB035467) EF-G [Porphyromonas gingivalis]
Length = 707
Score = 96.3 bits (236), Expect = 6e-19
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+N +IN++DTPGH DF EVER ++++DG V A G PQ+ V ++A +
Sbjct: 71 FWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPQSETVWRQAEKY 130
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
N+ I VNK+D+ A EVV ++ E+ LGA+ + P+
Sbjct: 131 NVPRIGYVNKMDRSGANFFEVVRQLREV---LGANPCPIQIPI 170
Score = 57.4 bits (136), Expect = 3e-07
Identities = 44/148 (29%), Positives = 67/148 (44%), Gaps = 10/148 (6%)
Query: 253 STKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDE 312
S K R+++LF + + GD+ A G +DI G+T+ +H L + +
Sbjct: 352 SEKKERISRLFQMHSNKQNPKEVIGCGDIGAGVGFKDIRTGDTLCDENHPIVLESMDFPD 411
Query: 313 PTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGEL 372
P + + R G V K+ E D + RV+ E + V+SG GEL
Sbjct: 412 PVIGIAVEPKTQKDLDRLG--VGLAKLAEE-------DPTFRVQTNEDSGQTVISGMGEL 462
Query: 373 HLSILIETMRRE-GYELQVSRPEVIIKE 399
HL I+I+ +RRE E RP+V KE
Sbjct: 463 HLDIIIDRLRREFKVECNQGRPQVSYKE 490
Score = 44.9 bits (104), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP ++++ TPEE G +I L++R+G + M+ + G + VP + G+ T +
Sbjct: 610 EPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRT 669
Query: 466 MTRGYGIMNHTFDQY 480
+T G TF Y
Sbjct: 670 ITSGRATSTMTFSHY 684
sp|P42477|EFTU_HERAU ELONGATION FACTOR TU (EF-TU) >gi|560835|emb|CAA54196| (X76868)
elongation factor Tu [Herpetosiphon aurantiacus]
Length = 400
Score = 96.0 bits (235), Expect = 8e-19
Identities = 88/323 (27%), Positives = 147/323 (45%), Gaps = 16/323 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKEL-AERAMDSNALEQERGITILAKNTAVEY 71
N+ I HVDHGKTTL + K + L R E A +D+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITK-TMALRGRAEFRAFDQIDNAPEERARGITISISHVEYET 72
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + +V
Sbjct: 73 ENRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAPDGPMPQTREHILLAGQVEVPAMV 132
Query: 132 V-VNKID-KPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
V +NK+D E+V+ E+ EL + G +++ P+V SA S S + + E
Sbjct: 133 VFLNKVDMMDDPELLELVEMELRELLTKYGFPGDEI--PIVRGSAKGALDSASTDASQPE 190
Query: 189 H-TMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
+ ++ + + D+IP P D+P + + +KVGD++ +
Sbjct: 191 YQSIQELMQAVDDYIPTPERAIDKPFLMPIEDVFSIKGRGTVVTGRIERGIVKVGDTIEI 250
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGME--DIFVGETVTPSDHVE 303
+ + VT + F ++ + E +AGD + L G+E D+ G+ + ++
Sbjct: 251 IGMGPDVRTTAVTGVEMF----KKLLDEGRAGDNVGALLRGIERTDVERGQVLAKPGSIK 306
Query: 304 PLPILHIDEPTLQMTFLANNSPF 326
P + L+ +SPF
Sbjct: 307 PHTKFKAEVYVLKKEEGGRHSPF 329
emb|CAA74739| (Y14370) peptide chain release factor 3 [Staphylococcus aureus]
Length = 521
Score = 95.6 bits (234), Expect = 1e-18
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELL------KQSQTLDARKELAERAMDSNALEQERGITI 62
E + A+I+H D GKTTL ++LL +++ T+ +K + R + +EQERGI++
Sbjct: 8 ESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKLVNLRQVTWMKVEQERGISV 67
Query: 63 LAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
+ +Y+ INILDTPGH DF + R + VD V+V+D +G P T + K
Sbjct: 68 TSSVMQFDYDDYEINILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGVEPPTLKLFKVC 127
Query: 123 LEQNLTPIVVVNKIDKPSARPAEVVDEVLE 152
+ + +NK+D+ P E++DE+ E
Sbjct: 128 KMRGIPIFTFINKLDRVGKEPFELLDEIEE 157
emb|CAA41267| (X58378) mitochondrial elongation factor G [Saccharomyces
cerevisiae]
Length = 761
Score = 95.6 bits (234), Expect = 1e-18
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 12/175 (6%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGITILAK 65
+RN+ + AH+D GKTT + +L ++ + A E+ R MDS LE+E+GITI +
Sbjct: 70 LRNIGISAHIDSGKTTFTERVLYYTKRIKAIHEVRGRDNVGAKMDSMDLEREKGITIQSA 129
Query: 66 NTAVEYN----GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
T ++ N++DTPGH DF EVER ++++DG VLVV A G QT V ++
Sbjct: 130 ATYCSWDKEGKNYHFNLIDTPGHIDFTIEVERALRVLDGAVLVVCAVSGVQSQTVTVDRQ 189
Query: 122 ALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAING 176
N+ + +NK+D+ + P ++ +L +L + PV S+++G
Sbjct: 190 MRRYNVPRVTFINKMDRMGSDPFRAIE---QLNSKLKIPAAAVQIPVGSESSLSG 241
Score = 52.3 bits (123), Expect = 1e-05
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 44/281 (15%)
Query: 144 AEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMAN-----IFDTI 198
A+V DE+ E+F+E Q + S I + S P +AN + D I
Sbjct: 286 ADVDDEMAEMFLEEKEPTTQQIKDAIRRSTI----ARSFTPVLMGSALANTGIQPVLDAI 341
Query: 199 IDHIPGP---------VDNSD----------EPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+D++P P V N++ +P L+ Y +
Sbjct: 342 VDYLPNPSEVLNTALDVSNNEAKVNLVPAVQQPFVGLAFKLEEGKYGQLTYVRVYQGR-L 400
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
+ G+ +T K + K +V +L + +++ E +G++ A G+ D G+T T
Sbjct: 401 RKGNYITNVK---TGKKVKVARLVRMHSSEMEDVDEVGSGEICATFGI-DCASGDTFTDG 456
Query: 300 DHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
+ +++ + + ++ + +NS A K + + E D + RV+
Sbjct: 457 SVQYSMSSMYVPDAVVSLS-ITSNSKDASNFSKALNRFQKE---------DPTFRVKFDP 506
Query: 360 SPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL I +E MRRE + +P+V +E
Sbjct: 507 ESKETIISGMGELHLEIYVERMRREYNVDCVTGKPQVSYRE 547
sp|O50306|EFTU_BACST ELONGATION FACTOR TU (EF-TU) >gi|2661392|emb|CAA03976| (AJ000260)
EF-Tu [Bacillus stearothermophilus]
Length = 395
Score = 95.2 bits (233), Expect = 1e-18
Identities = 80/274 (29%), Positives = 120/274 (43%), Gaps = 15/274 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + A +D+ E+ERGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKQGKAEAKAYDQIDAAPEERERGITISTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + + + + IVV
Sbjct: 74 ARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS-DNPADQE 188
+NK D V DE L +E+ D + DFP I GS+ + + E
Sbjct: 134 FLNKCDM-------VDDEELLELVEMEVRDLLSEYDFPGDEVPVIKGSALKALEGDPKWE 186
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
+ + + + ++IP P D+P + + T+KVGD V +
Sbjct: 187 EKIIELMNAVDEYIPTPQREVDKPFMMPIEDVFSITGRGTVATGRVERGTLKVGDPVEII 246
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLI 282
L K VT + F R+ + +A+AGD I
Sbjct: 247 GLSDEPKATTVTGVEMF----RKLLDQAEAGDNI 276
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
>gi|1942755|pdb|1TTT|B Chain B, Phe-Trna, Elongation
Factor Ef-Tu:gdpnp Ternary Complex
>gi|1942756|pdb|1TTT|C Chain C, Phe-Trna, Elongation
Factor Ef-Tu:gdpnp Ternary Complex
>gi|2392582|pdb|1TUI|A Chain A, Intact Elongation Factor
Tu In Complex With Gdp >gi|2392583|pdb|1TUI|B Chain B,
Intact Elongation Factor Tu In Complex With Gdp
>gi|2392584|pdb|1TUI|C Chain C, Intact Elongation Factor
Tu In Complex With Gdp >gi|4139776|pdb|1B23|P Chain P,
E. Coli Cysteinyl-Trna And T. Aquaticus Elongation
Factor Ef-Tu:gtp Ternary Complex
Length = 405
Score = 94.8 bits (232), Expect = 2e-18
Identities = 88/289 (30%), Positives = 131/289 (44%), Gaps = 30/289 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 133 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMH 183
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 184 KNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 243
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+KVGD V + L T+ VT + + R+ +QE AGD + L
Sbjct: 244 RGKVKVGDEVEIVGLAPETRKTVVTGV----EMHRKTLQEGIAGDNVGL 288
sp|Q01698|EFTU_THEAQ ELONGATION FACTOR TU (EF-TU) >gi|478775|pir||S29293 translation
elongation factor Tu.A - Thermus aquaticus
>gi|49098|emb|CAA46998| (X66322) elongation factor Tu
[Thermus aquaticus]
Length = 406
Score = 94.8 bits (232), Expect = 2e-18
Identities = 88/289 (30%), Positives = 131/289 (44%), Gaps = 30/289 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 134 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMH 184
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 185 KNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 244
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+KVGD V + L T+ VT + + R+ +QE AGD + L
Sbjct: 245 RGKVKVGDEVEIVGLAPETRKTVVTGV----EMHRKTLQEGIAGDNVGL 289
sp|P09952|EFG_MICLU ELONGATION FACTOR G (EF-G) >gi|79831|pir||C26956 translation
elongation factor G - Micrococcus luteus >gi|149853
(M17788) elongation factor G (gtg start codon)
[Micrococcus luteus]
Length = 701
Score = 94.8 bits (232), Expect = 2e-18
Identities = 60/167 (35%), Positives = 92/167 (54%), Gaps = 6/167 (3%)
Query: 4 LTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQE--RGIT 61
LT L + +RN+ ++AH+D GKTT + L + E + ++ +EQE RGIT
Sbjct: 2 LTDLHK-VRNIGIMAHIDAGKTTTTERHLFYTGVNHKLGETHDGGATTDWMEQEKERGIT 60
Query: 62 ILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
I + +N +INI+D PGH DF EVER ++++DG V V D EG PQ+ V ++
Sbjct: 61 ITSAAVTCFWNDHQINIIDNPGHVDFTVEVERSLRVLDGAVAVFDGKEGVEPQSETVWRQ 120
Query: 122 ALEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
A + ++ I VNK+DK A VD +++ LGA + P+
Sbjct: 121 ADKYDVPRICFVNKMDKLGADFYFTVDTIVK---RLGARPLVMQLPI 164
Score = 53.5 bits (126), Expect = 5e-06
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 10/146 (6%)
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLPILHIDEPT 314
K R+ KLF + E AG + A+ G++D G+T+ + L + EP
Sbjct: 351 KKERIGKLFQMHANKENPVDEVVAGHIYAVIGLKDTTTGDTLCDPANPIILESMTFPEPV 410
Query: 315 LQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVVSGRGELHL 374
+ + G + K T+ ++LV+E D + RV E + + G GELHL
Sbjct: 411 ISVAIEPKTK---GDQEKLSTAI---QKLVAE---DPTFRVNLNEETGQTEIGGMGELHL 461
Query: 375 SILIETMRRE-GYELQVSRPEVIIKE 399
+ ++ M+RE E V +P+V +E
Sbjct: 462 DVFVDRMKREFKVEANVGKPQVAYRE 487
Score = 45.7 bits (106), Expect = 0.001
Identities = 28/102 (27%), Positives = 49/102 (47%), Gaps = 4/102 (3%)
Query: 397 IKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDM-LDMQITGNGQARLIFLVPARG 455
+++ + EP V++ TPEE+ G +I L+ R+G + + G + LVP
Sbjct: 599 VRKATPIILEPLMAVEVRTPEEFMGDVIGDLNSRRGQIQIQSMEDATGVKVVNALVPLSE 658
Query: 456 LIGFTTEFMSMTRGYGIMNHTFDQYL---PAVKGEIGGRHRG 494
+ G+ + S T+G + + TF Y AV EI + +G
Sbjct: 659 MFGYIGDLRSKTQGRAVYSMTFHSYAEVPKAVADEIVQKSQG 700
dbj|BAA88143.1| (AB035470) EF-G [Porphyromonas gingivalis]
Length = 707
Score = 94.4 bits (231), Expect = 2e-18
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 9/163 (5%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ ++AH+D GKTT + +L + E+ + A MD EQERGITI + T
Sbjct: 11 RNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQERGITITSAATTA 70
Query: 70 EYNGT----RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+N +IN++DTPGH DF EVER ++++DG V A G P + V ++A +
Sbjct: 71 FWNYNNQKYKINLIDTPGHVDFTVEVERSLRILDGAVAAFCAVGGVEPHSETVWRQAEKY 130
Query: 126 NLTPIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
N+ I VNK+D+ A EVV ++ E+ LGA+ + P+
Sbjct: 131 NVPRIGYVNKMDRSGANFFEVVRQLREV---LGANPCPIQIPI 170
Score = 44.9 bits (104), Expect = 0.002
Identities = 22/75 (29%), Positives = 38/75 (50%)
Query: 406 EPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMS 465
EP ++++ TPEE G +I L++R+G + M+ + G + VP + G+ T +
Sbjct: 610 EPIMKLEVVTPEESMGDVIGDLNKRRGQVEGMESSRTGARIVKAKVPLAEMFGYVTALRT 669
Query: 466 MTRGYGIMNHTFDQY 480
+T G TF Y
Sbjct: 670 ITSGRATSTMTFSHY 684
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 94.4 bits (231), Expect = 2e-18
Identities = 88/289 (30%), Positives = 131/289 (44%), Gaps = 30/289 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 133 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEEMH 183
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 184 KNPKTKRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 243
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+KVGD V + L T+ VT + + R+ +QE AGD + L
Sbjct: 244 RGKVKVGDEVEIVGLAPETRKTVVTGV----EMHRKTLQEGIAGDNVGL 288
sp|Q9ZK24|EFG_HELPJ ELONGATION FACTOR G (EF-G) >gi|4155707 (AE001539) ELONGATION FACTOR
G (EF-G) [Helicobacter pylori J99]
Length = 692
Score = 94.0 bits (230), Expect = 3e-18
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
IRN+ + AH+D GKTT + +L + E+ + A MD E+ERGITI + T
Sbjct: 10 IRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATT 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ +IN++DTPGH DF EVER M+++DG V V + G PQ+ V ++A + +
Sbjct: 70 CFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVP 129
Query: 129 PIVVVNKIDKPSARPAEVVDEV--------LELFIELGADD 161
IV VNK+D+ A V +++ + + I +GA+D
Sbjct: 130 RIVFVNKMDRIGANFYNVENQIKQRLKANPVPINIPIGAED 170
Score = 67.1 bits (161), Expect = 4e-10
Identities = 67/293 (22%), Positives = 118/293 (39%), Gaps = 31/293 (10%)
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP---- 184
P ++ K + + E V E E +E E+LD + G +MS P
Sbjct: 201 PSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELDIEEIKKGIKTGCLNMSFVPMLCG 260
Query: 185 -ADQEHTMANIFDTIIDHIPGPVDNSD----EPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ + + + D +ID++P P + D +P + + +D
Sbjct: 261 SSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDP 320
Query: 240 KVGD----SVTLSKLDGST--------KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGM 287
VG V KL+ + K RV +L R++I+E AG++ A G+
Sbjct: 321 FVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGL 380
Query: 288 EDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSEL 347
+D G+T+ + L + EP + + A +E V K+ E
Sbjct: 381 KDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTK--ADQEKMGVALGKLAEE----- 433
Query: 348 QTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
D S RV E + ++ G GELHL I+++ ++RE E ++ +P+V +E
Sbjct: 434 --DPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484
Score = 48.8 bits (114), Expect = 1e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP +V+++ PEEY G +I L+ R+G + M G + VP + G++T+
Sbjct: 599 VLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMD-DRLGLKIVNAFVPLVEMFGYSTD 657
Query: 463 FMSMTRGYGIMNHTFDQY 480
S T+G G + FD Y
Sbjct: 658 LRSATQGRGTYSMEFDHY 675
sp|P56002|EFG_HELPY ELONGATION FACTOR G (EF-G) >gi|2314354|gb|AAD08239.1| (AE000625)
translation elongation factor EF-G (fusA) [Helicobacter
pylori 26695]
Length = 692
Score = 94.0 bits (230), Expect = 3e-18
Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 10/161 (6%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTA 68
IRN+ + AH+D GKTT + +L + E+ + A MD E+ERGITI + T
Sbjct: 10 IRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATT 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ +IN++DTPGH DF EVER M+++DG V V + G PQ+ V ++A + +
Sbjct: 70 CFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVP 129
Query: 129 PIVVVNKIDKPSARPAEVVDEV--------LELFIELGADD 161
IV VNK+D+ A V +++ + + I +GA+D
Sbjct: 130 RIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAED 170
Score = 63.6 bits (152), Expect = 4e-09
Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 31/293 (10%)
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP---- 184
P ++ K + + E V E E +E E+L + G +MS P
Sbjct: 201 PSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEIKKGIKAGCLNMSLVPMLCG 260
Query: 185 -ADQEHTMANIFDTIIDHIPGPVDNSD----EPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ + + + D +ID++P P + D +P + + +D
Sbjct: 261 SSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDP 320
Query: 240 KVGD----SVTLSKLDGST--------KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGM 287
VG V KL+ + K RV +L R++I+E AG++ A G+
Sbjct: 321 FVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGL 380
Query: 288 EDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSEL 347
+D G+T+ + L + EP + + A +E V K+ E
Sbjct: 381 KDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTK--ADQEKMGVALGKLAEE----- 433
Query: 348 QTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
D S RV E + ++ G GELHL I+++ ++RE E ++ +P+V +E
Sbjct: 434 --DPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 484
Score = 48.8 bits (114), Expect = 1e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP +V+++ PEEY G +I L+ R+G + M G + VP + G++T+
Sbjct: 599 VLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMD-DRLGLKIVNAFVPLVEMFGYSTD 657
Query: 463 FMSMTRGYGIMNHTFDQY 480
S T+G G + FD Y
Sbjct: 658 LRSATQGRGTYSMEFDHY 675
sp|P33166|EFTU_BACSU ELONGATION FACTOR TU (EF-TU) (P-40) >gi|320510|pir||A60663
translation elongation factor Tu - Bacillus subtilis
>gi|1644224|dbj|BAA11004| (D64127) elongation factor Tu
[Bacillus subtilis] >gi|2632380|emb|CAB11889| (Z99104)
elongation factor Tu [Bacillus subtilis]
Length = 396
Score = 94.0 bits (230), Expect = 3e-18
Identities = 94/329 (28%), Positives = 143/329 (42%), Gaps = 27/329 (8%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDAR-KELAERAMDSNALEQERGITILAKNTAVEY 71
N+ I HVDHGKTTL + + +A +D E+ERGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLHKKSGKGTAMAYDQIDGAPEERERGITISTAHVEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+D PGHAD+ + +DG +LVV A +G MPQTR + + + IV
Sbjct: 74 ETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKNVGVPYIV 133
Query: 132 V-VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS-DNPADQ 187
V +NK D V DE L +E+ D + DFP + GS+ + + A+
Sbjct: 134 VFLNKCDM-------VDDEELLELVEMEVRDLLSEYDFPGDDVPVVKGSALKALEGDAEW 186
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
E + + D + ++IP P ++++P V + +KVGD V +
Sbjct: 187 EAKIFELMDAVDEYIPTPERDTEKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEI 246
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGE------TVT 297
L K VT + F R+ + A+AGD I L G+ E+I G+ T+T
Sbjct: 247 IGLQEENKKTTVTGVEMF----RKLLDYAEAGDNIGALLRGVSREEIQRGQVLAKPGTIT 302
Query: 298 P-SDHVEPLPILHIDEPTLQMTFLANNSP 325
P S + +L +E F +N P
Sbjct: 303 PHSKFKAEVYVLSKEEGGRHTPFFSNYRP 331
dbj|BAA75269.1| (AB017508) tufA homologue (identity of 91% to B. subtilis )
[Bacillus halodurans]
Length = 396
Score = 93.6 bits (229), Expect = 4e-18
Identities = 94/333 (28%), Positives = 150/333 (44%), Gaps = 35/333 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKE-----LAERAMDSNALEQERGITILAKNT 67
N+ I HVDHGKTTL + T+ A++ +A A+D E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAIT----TVLAKRSGKGVAMAYDAIDGAPEERERGITISTAHV 69
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
E + +D PGHAD+ + +DG +LVV A +G MPQTR + + + +
Sbjct: 70 EYETDNRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLSRQVGV 129
Query: 128 TPIVV-VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS-DN 183
+VV +NK D V DE L +E+ D + DFP I GS+ + +
Sbjct: 130 PYLVVFLNKCDM-------VDDEELLELVEMEVRDLLSEYDFPGDDVPVIRGSALKALEG 182
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
A+ E + + + D+IP P ++++P V + + VGD
Sbjct: 183 DAEWEEKIIELMAAVDDYIPTPERDTEKPFMMPVEDVFSITGRGTVATGRVERGQLNVGD 242
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGE----- 294
V + L+ K VT + F R+ + A+AGD I L G+ E++ G+
Sbjct: 243 EVEIIGLEEEAKKTTVTGVEMF----RKLLDYAEAGDNIGALLRGVSREEVQRGQVLAKP 298
Query: 295 -TVTPSDHVE-PLPILHIDEPTLQMTFLANNSP 325
T+TP + + + +L +E F +N P
Sbjct: 299 GTITPHTNFKAEVYVLSKEEGGRHTPFFSNYRP 331
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
>gi|2624672|pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From
Thermus Thermophilus >gi|2624675|pdb|1AIP|E Chain E,
Ef-Tu Ef-Ts Complex From Thermus Thermophilus
>gi|2624676|pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From
Thermus Thermophilus
Length = 405
Score = 93.6 bits (229), Expect = 4e-18
Identities = 92/313 (29%), Positives = 141/313 (44%), Gaps = 34/313 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 72
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 132
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 133 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 183
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 184 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 243
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIF 291
+KVGD V + L T+ VT + + R+ +QE AGD + L G+ E++
Sbjct: 244 RGKVKVGDEVEIVGLAPETRRTVVTGV----EMHRKTLQEGIAGDNVGVLLRGVSREEVE 299
Query: 292 VGETVTPSDHVEP 304
G+ + + P
Sbjct: 300 RGQVLAKPGSITP 312
emb|CAA29397| (X05977) elongation factor Tu (AA 1 - 406) [Thermus thermophilus]
Length = 406
Score = 93.6 bits (229), Expect = 4e-18
Identities = 92/313 (29%), Positives = 141/313 (44%), Gaps = 34/313 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 134 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 184
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 185 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 244
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIF 291
+KVGD V + L T+ VT + + R+ +QE AGD + L G+ E++
Sbjct: 245 RGKVKVGDEVEIVGLAPETRRTVVTGV----EMHRKTLQEGIAGDNVGVLLRGVSREEVE 300
Query: 292 VGETVTPSDHVEP 304
G+ + + P
Sbjct: 301 RGQVLAKPGSITP 313
sp|P07157|EFTU_THETH ELONGATION FACTOR TU (EF-TU) >gi|77584|pir||S00229 translation
elongation factor Tu.A - Thermus aquaticus
>gi|48286|emb|CAA29856| (X06657) elongation factor Tu
(AA 1-406) [Thermus thermophilus]
>gi|225912|prf||1403291A tuf gene [Thermus aquaticus
thermophilus]
Length = 406
Score = 93.6 bits (229), Expect = 4e-18
Identities = 92/313 (29%), Positives = 141/313 (44%), Gaps = 34/313 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 14 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 134 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 184
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 185 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 244
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIF 291
+KVGD V + L T+ VT + + R+ +QE AGD + L G+ E++
Sbjct: 245 RGKVKVGDEVEIVGLAPETRRTVVTGV----EMHRKTLQEGIAGDNVGVLLRGVSREEVE 300
Query: 292 VGETVTPSDHVEP 304
G+ + + P
Sbjct: 301 RGQVLAKPGSITP 313
emb|CAB53113.1| (AJ245645) protein synthesis elongation factor Tu [Prototheca
wickerhamii]
Length = 409
Score = 93.2 bits (228), Expect = 5e-18
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 28/287 (9%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K +DS E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMALAARGGGKGKKYAEIDSAPEEKARGITINTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV +G MPQT+ + A + + IVV
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNIVV 133
Query: 133 -VNKIDKPSARPAEVVD--EVLELF-IELGADDEQLDF-----PVVYASAINGSSSMSDN 183
+NK D+ VD E++EL +E+ ++ DF P++ SA+ ++++DN
Sbjct: 134 FINKEDQ--------VDDIELIELVELEVRETLQRYDFPGDEVPMIPGSALMALTALTDN 185
Query: 184 PADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXX 237
P + + N+ D + +IP P N ++P + +
Sbjct: 186 PKIKPGENKWVDKIYNLMDIVDSYIPTPKRNIEKPFLMAIEDVFSITGRGTVATGRVERG 245
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+K+GDSV + L G+TK VT L F ++ + E+ AGD + +
Sbjct: 246 VVKIGDSVEIVGL-GATKITTVTGLEMF----QKTLDESIAGDNVGI 287
pir||S17146 translation elongation factor Tu.B - Thermus aquaticus
>gi|312960|emb|CAA43956| (X61957) elongation factor Tu
[Thermus thermophilus] >gi|228025|prf||1715213A
elongation factor Tu [Thermus aquaticus thermophilus]
Length = 406
Score = 93.2 bits (228), Expect = 5e-18
Identities = 92/313 (29%), Positives = 141/313 (44%), Gaps = 34/313 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL L + + E+ + +D E+ RGITI + E
Sbjct: 14 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + IV
Sbjct: 74 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIV 133
Query: 132 V-VNKIDKPSARPAEVVD--EVLELFIELGADD--EQLDF-----PVVYASAINGSSSMS 181
V +NK+D +VD E+L+L +E+ D Q +F PV+ SA+ M
Sbjct: 134 VFMNKVD--------MVDDPELLDL-VEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMH 184
Query: 182 DNPADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
NP + + + D I ++IP PV + D+P V +
Sbjct: 185 RNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIE 244
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIF 291
+KVGD V + L T+ VT + + R+ +QE AGD + L G+ E++
Sbjct: 245 RGKVKVGDEVEIVGLAPETRKTVVTGV----EMHRKTLQEGIAGDNVGVLLRGVSREEVE 300
Query: 292 VGETVTPSDHVEP 304
G+ + + P
Sbjct: 301 RGQVLAKPGSITP 313
sp|O51634|EFG2_BORBU ELONGATION FACTOR G 2 (EF-G 2) >gi|2688636 (AE001170) translation
elongation factor G (fus-2) [Borrelia burgdorferi]
Length = 669
Score = 92.8 bits (227), Expect = 7e-18
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 11 IRNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKNTA 68
IRN+ ++AH+D GKTT + ++ + ++ D EQERGITI +
Sbjct: 3 IRNIGIMAHIDAGKTTTTERIIYYTGKSHKMGDVDSGNTITDWMPQEQERGITISSAAIT 62
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ +INI+DTPGH DF EVER ++++DG +++ A +G QT V K+A + +
Sbjct: 63 CHWKDCQINIIDTPGHVDFTAEVERSLRVLDGGIVIFSAVDGIQAQTETVWKQAEKYEIP 122
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELF 154
+ VNK+D+ A +VV ++ F
Sbjct: 123 RLAYVNKMDRIGADFFKVVGDIENKF 148
Score = 63.2 bits (151), Expect = 6e-09
Identities = 74/353 (20%), Positives = 146/353 (40%), Gaps = 45/353 (12%)
Query: 148 DEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTMANI-----FDTIIDHI 202
+E+ +LF+E D+++ ++ G+ S P ++ NI D+I+D++
Sbjct: 217 EEITQLFLE----DKEIGLDIIKREIRRGTISRFIIPVLMGTSLKNIGIEPLIDSIVDYL 272
Query: 203 PGPVDNSDEPLQFQVS---LLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKL--------- 250
P P + S + L+D N+ + + + ++
Sbjct: 273 PSPFEKSFSAFSLDTNKKILVDPNENKKLSALVFKVQYSSVIASHLYFVRVYSGEINPNK 332
Query: 251 ----DGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPLP 306
+ K + TK+F F ++I K GD+ A+ G++ G+T+ ++ L
Sbjct: 333 KIINASNGKREKFTKIFRVFSNKNEQIDFVKTGDIGAVLGLKFSVTGDTLVEENNNVLLE 392
Query: 307 ILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTESPDKWVV 366
+ EP + M S R V +++ E + E D + ++ + ++
Sbjct: 393 AVMFPEPVVLM------SVEPERSSDEVRLKEIFEIISKE---DPTFSYSESKETGQLII 443
Query: 367 SGRGELHLSILIETMRRE-GYELQVSRPEVIIKEIDG-VACEPFERVQIDTPEEYQ---G 421
SG GELHL I++ ++ E + +P+V +E G + E FE I + G
Sbjct: 444 SGMGELHLEIILTRIKDEFNLNVYTGKPQVSYRESAGKIVKEVFEFNNIFAGKNIDFKIG 503
Query: 422 SIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMN 474
II+ LS G+ +D + + ++ + L G T+ F+S GY I++
Sbjct: 504 MIIKPLSRGAGNKIDF------ECGIEPVIKSAILRGITSAFVSGIFGYPIID 550
gb|AAF04270.1|AF181877_1 (AF181877) elongation factor G [Helicobacter pylori]
Length = 682
Score = 92.4 bits (226), Expect = 9e-18
Identities = 57/160 (35%), Positives = 89/160 (55%), Gaps = 10/160 (6%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKNTAV 69
RN+ + AH+D GKTT + +L + E+ + A MD E+ERGITI + T
Sbjct: 1 RNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTC 60
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
+ +IN++DTPGH DF EVER M+++DG V V + G PQ+ V ++A + +
Sbjct: 61 FWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPR 120
Query: 130 IVVVNKIDKPSARPAEVVDEV--------LELFIELGADD 161
IV VNK+D+ A V +++ + + I +GA+D
Sbjct: 121 IVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAED 160
Score = 64.8 bits (155), Expect = 2e-09
Identities = 66/293 (22%), Positives = 118/293 (39%), Gaps = 31/293 (10%)
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNP---- 184
P ++ K + + E V E E +E E+L+ + G +MS P
Sbjct: 191 PSDLLEKAKQYREKLVEAVAEQDEALMEKYLGGEELNIEEIKKGIKTGCLNMSLVPMLCG 250
Query: 185 -ADQEHTMANIFDTIIDHIPGPVDNSD----EPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ + + + D +ID++P P + D +P + + +D
Sbjct: 251 SSFKNKGVQTLLDAVIDYLPAPTEVVDIRGIDPKTEEEVFVKSSDDGEFAGLAFKIMTDP 310
Query: 240 KVGD----SVTLSKLDGST--------KNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGM 287
VG V KL+ + K RV +L R++I+E AG++ A G+
Sbjct: 311 FVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDIKEVYAGEICAFVGL 370
Query: 288 EDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSEL 347
+D G+T+ + L + EP + + A +E V K+ E
Sbjct: 371 KDTLTGDTLCDEKNAVVLERMEFPEPVIHIAVEPKTK--ADQEKMGVALGKLAEE----- 423
Query: 348 QTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
D S RV E + ++ G GELHL I+++ ++RE E ++ +P+V +E
Sbjct: 424 --DPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRE 474
Score = 48.8 bits (114), Expect = 1e-04
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 403 VACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLIGFTTE 462
V EP +V+++ PEEY G +I L+ R+G + M G + VP + G++T+
Sbjct: 589 VLLEPMMKVEVEVPEEYMGDVIGDLNRRRGQINSMD-DRLGLKIVNAFVPLVEMFGYSTD 647
Query: 463 FMSMTRGYGIMNHTFDQY 480
S T+G G + FD Y
Sbjct: 648 LRSATQGRGTYSMEFDHY 665
ref|NP_014830.1|TUF1| Translation elongation factor Tu, mitochondrial; Tuf1p
>gi|119216|sp|P02992|EFTU_YEAST ELONGATION FACTOR TU,
MITOCHONDRIAL PRECURSOR >gi|72868|pir||EFBYT translation
elongation factor Tu precursor, mitochondrial - yeast
(Saccharomyces cerevisiae) >gi|1420449|emb|CAA99396|
(Z75095) ORF YOR187w [Saccharomyces cerevisiae]
Length = 437
Score = 92.1 bits (225), Expect = 1e-17
Identities = 78/271 (28%), Positives = 121/271 (43%), Gaps = 11/271 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K L A+D E+ RGITI + E
Sbjct: 50 NIGTIGHVDHGKTTLTAAITKTLAAKGGANFLDYAAIDKAPEERARGITISTAHVEYETA 109
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+ +D PGHAD+ + +DG ++VV A +G MPQTR L A + + IVV
Sbjct: 110 KRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMPQTREHLLLARQVGVQHIVV 169
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEH 189
VNK+D E+V+ E+ EL E G D + + P++ SA+ + P E
Sbjct: 170 FVNKVDTIDDPEMLELVEMEMRELLNEYGFDGD--NAPIIMGSAL--CALEGRQPEIGEQ 225
Query: 190 TMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSK 249
+ + D + ++IP P + ++P V + +K G+ + +
Sbjct: 226 AIMKLLDAVDEYIPTPERDLNKPFLMPVEDIFSISGRGTVVTGRVERGNLKKGEELEIVG 285
Query: 250 LDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
+ + VT + F R+E+ A AGD
Sbjct: 286 HNSTPLKTTVTGIEMF----RKELDSAMAGD 312
sp|P35450|EFGC_PEA ELONGATION FACTOR G, CHLOROPLAST (EF-G) >gi|553080 (L16508)
chloroplast EF-G [Pisum sativum]
Length = 141
Score = 92.1 bits (225), Expect = 1e-17
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 12 KDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 71
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQN 126
T ++ RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A
Sbjct: 72 TTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADRYG 131
Query: 127 LTPIVVVNKI 136
+ I VNK+
Sbjct: 132 VPRICFVNKM 141
sp|P56292|EFTU_CHLVU ELONGATION FACTOR TU (EF-TU) >gi|2224402|dbj|BAA57886| (AB001684)
protein synthesis elongation factor Tu [Chlorella
vulgaris]
Length = 409
Score = 91.7 bits (224), Expect = 2e-17
Identities = 81/282 (28%), Positives = 127/282 (44%), Gaps = 18/282 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K +DS E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMALAARGGAKGRKYDDIDSAPEEKARGITINTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV +G MPQT+ L A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGADGPMPQTKEHLLLAKQVGVPNIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQL---DFPVVYASAINGSSSMSDNPADQE 188
+NK D+ AE++ E+LEL I D + + P++ SA+ ++++NP +
Sbjct: 134 FLNKEDQ--VDDAELL-ELLELEIRETLDKYEFPGDEIPIISGSALLALEALTENPETKP 190
Query: 189 ------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
+ N+ D + +IP P +++P V + +K+G
Sbjct: 191 GDNKWVDKIYNLMDQVDSYIPTPERETEKPFLMAVEDVFSITGRGTVATGRVERGCVKIG 250
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
D+V L L TK VT L F ++ + E+ AGD + +
Sbjct: 251 DTVELVGL-RDTKTTTVTGLEMF----QKTLDESVAGDNVGI 287
sp|P33170|EFTU_STROR ELONGATION FACTOR TU (EF-TU) >gi|320486|pir||F60663 translation
elongation factor Tu - Streptococcus oralis
Length = 398
Score = 91.7 bits (224), Expect = 2e-17
Identities = 81/305 (26%), Positives = 141/305 (45%), Gaps = 26/305 (8%)
Query: 13 NVAVIAHVDHGKTTLVDELL-----KQSQTLDARKELAERAMDSNALEQERGITILAKNT 67
N+ I HVDHGKTTL + + ++ K+ A ++D+ E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLARRLPSAVNQPKDYA--SIDAAPEERERGITINTAHV 71
Query: 68 AVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNL 127
E +D PGHAD+ + +DG +LVV + +G MPQTR + + + +
Sbjct: 72 EYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGV 131
Query: 128 TPIVV-VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS-DN 183
++V +NKID V DE L +E+ D + DFP I GS+ + +
Sbjct: 132 KHLIVFMNKIDL-------VDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEG 184
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ E + + +T+ ++IP P ++++PL V + T++V D
Sbjct: 185 DSKYEDIIMELMNTVDEYIPEPERDTEKPLLLPVEDVFSITGRGTVASGRIDRGTVRVND 244
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGETVTPS 299
+ + + T+ VT + F R+++ E AGD + L G+ ++I G+ +
Sbjct: 245 EIEIVGIKEETQKAVVTGVEMF----RKQLDEGLAGDNVGVLLRGVQRDEIERGQVIAKP 300
Query: 300 DHVEP 304
+ P
Sbjct: 301 GSINP 305
sp|Q17152|EF2_BLAHO ELONGATION FACTOR 2 (EF-2) >gi|1125010|dbj|BAA11469.1| (D79219)
Peptide Elongation Factor 2 [Blastocystis hominis]
Length = 867
Score = 91.3 bits (223), Expect = 2e-17
Identities = 55/169 (32%), Positives = 87/169 (50%), Gaps = 34/169 (20%)
Query: 4 LTKLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITI- 62
+ + +IRN++V+AHVDHGK+TL D L+ ++ + + R D+ A EQER ITI
Sbjct: 12 MMNMTHNIRNLSVVAHVDHGKSTLTDALVSKAGIISKKAAGDARFTDTRADEQERCITIK 71
Query: 63 --------------LAKNTAVEYNGTR-----------------INILDTPGHADFGGEV 91
+ K A N T IN++D+PGH DF EV
Sbjct: 72 STGISLYFEYDPETIDKQAAAPLNPTEEGDPTEEDIEIKQNSYLINLIDSPGHVDFSSEV 131
Query: 92 ERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV--VVNKIDK 138
+++ DG ++VVD+ G QT VL++AL + + P++ + NK+D+
Sbjct: 132 TASLRVTDGALVVVDSVGGVCVQTETVLRQALAERIRPVLSCMCNKLDR 180
sp|P17745|EFTU_ARATH ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR (EF-TU)
>gi|81607|pir||S09152 translation elongation factor Tu
precursor, chloroplast - Arabidopsis thaliana
>gi|22565|emb|CAA36498| (X52256) elongation factor Tu
precursor [Arabidopsis thaliana]
>gi|5738381|emb|CAB45802.2| (AL080253) translation
elongation factor EF-Tu precursor, chloroplast
[Arabidopsis thaliana] >gi|226817|prf||1607332A
elongation factor Tu [Arabidopsis thaliana]
Length = 476
Score = 91.3 bits (223), Expect = 2e-17
Identities = 81/283 (28%), Positives = 129/283 (44%), Gaps = 20/283 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL L ++ + +D+ E+ RGITI E
Sbjct: 81 NIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDEIDAAPEERARGITINTATVEYETE 140
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV +G MPQT+ + A + + +VV
Sbjct: 141 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPDMVV 200
Query: 133 -VNKIDK-PSARPAEVVD-EVLELF--IELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
+NK D+ A E+V+ EV EL E D D P++ SA+ ++++NP +
Sbjct: 201 FLNKEDQVDDAELLELVELEVRELLSSYEFNGD----DIPIISGSALLAVETLTENPKVK 256
Query: 188 E------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKV 241
+ + D + D+IP P ++ P V + T+KV
Sbjct: 257 RGDNKWVDKIYELMDAVDDYIPIPQRQTELPFLLAVEDVFSITGRGTVATGRVERGTVKV 316
Query: 242 GDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
G++V L L T+++ VT + F ++ + EA AGD + L
Sbjct: 317 GETVDLVGL-RETRSYTVTGVEMF----QKILDEALAGDNVGL 354
gb|AAF15312.1|AF145053_1 (AF145053) chloroplast translational elongation factor Tu [Oryza
sativa]
Length = 467
Score = 90.9 bits (222), Expect = 3e-17
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL L ++ +D+ E+ RGITI E
Sbjct: 72 NIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYDEIDAAPEERARGITINTATVEYETE 131
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV +G MPQT+ + A + + IVV
Sbjct: 132 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPKIVV 191
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA---- 185
+NK D+ ++V+ EV EL D +++ P+V SA+ ++ NPA
Sbjct: 192 FLNKKDQVDDEELLQLVELEVRELLSSYEYDGDEV--PIVAGSALKALENLMANPAIKRG 249
Query: 186 DQEHT--MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
D E + ++ D++ ++IP P +D P V + T+KVGD
Sbjct: 250 DDEWVDGIFSLIDSVDNYIPVPQRQTDLPFLLAVEDVFSITGRGTVATGRIERGTVKVGD 309
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+V + + T+N VT + F ++ + +A AGD + L
Sbjct: 310 TVDIVGI-RETRNCTVTGVEMF----QKTMDDAMAGDNVGL 345
sp|O50565|EFG_THICU ELONGATION FACTOR G (EF-G) >gi|2654448 (U78300) elongation factor G
[Thiobacillus cuprinus]
Length = 702
Score = 90.5 bits (221), Expect = 4e-17
Identities = 55/142 (38%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA--MDSNALEQERGITILAKN 66
E RN+ + AH+D GKTT + +L + E+ + A MD EQERGITI +
Sbjct: 8 ERYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA 67
Query: 67 TAVEYNGT-------RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
T + G RINI+DTPGH DF EVER M+++DG +V A G PQ+ V
Sbjct: 68 TTCFWKGMDLSLPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVW 127
Query: 120 KKALEQNLTPIVVVNKIDKPSA 141
++A + + + VNK+D+ A
Sbjct: 128 RQANKYKVPRLAFVNKMDRTGA 149
Score = 71.4 bits (172), Expect = 2e-11
Identities = 58/221 (26%), Positives = 93/221 (41%), Gaps = 31/221 (14%)
Query: 198 IIDHIPGPVD------------------NSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ID +P PVD + DE L + Y +
Sbjct: 280 VIDFLPSPVDIPPCNGTDDNEHDTVRRASDDEKFSALAFKLMTDPYVGQLTFIRVYSGIL 339
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPS 299
+ GD+V + + G K R+ + R EI+E +AGD+ G+ +I GET+
Sbjct: 340 QSGDTV-YNPIKG--KKERIGRFVQMHANQRDEIKEVRAGDIAPAIGLREITTGETLCDP 396
Query: 300 DHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVENTE 359
+ + L + EP + A +E + ++V Q D S RV+ E
Sbjct: 397 ESIITLEKMVFPEPVISQAVEPKTK--ADQEKMGIALQRVA-------QEDPSFRVKTDE 447
Query: 360 SPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPEVIIKE 399
+ ++SG GELHL IL++ M+RE G E V +P+V +E
Sbjct: 448 ESGQTIISGMGELHLEILVDRMKREFGVEANVGKPQVAYRE 488
Score = 47.3 bits (110), Expect = 4e-04
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 398 KEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVPARGLI 457
++ + V EP V+++TPE+Y G+++ LS R+G + M G + VP +
Sbjct: 602 RKANPVILEPMMAVEVETPEDYAGNVMGDLSSRRGMVQGMDEIVTGGKVIRAEVPLSEMF 661
Query: 458 GFTTEFMSMTRGYGIMNHTFDQYLPA 483
G++T SM++G + F Y A
Sbjct: 662 GYSTTLRSMSQGRATYSMEFKHYAEA 687
emb|CAA45101| (X63539) orf [Mycobacterium tuberculosis]
Length = 403
Score = 90.5 bits (221), Expect = 4e-17
Identities = 91/328 (27%), Positives = 140/328 (41%), Gaps = 25/328 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLK--QSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ I HVDHGKTTL + K + D + A +D+ E++RGITI + +
Sbjct: 21 NIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFDQIDNAPEERQRGITINIAHVEYQ 80
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + I
Sbjct: 81 TDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYI 140
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIE--LGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
+V ++K A E + E++E+ + L A + D PVV SA+ + A E
Sbjct: 141 LVA--LNKADAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGDAKWVASVE 198
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M + + + IP PV +D+P V + I V + V +
Sbjct: 199 ELM----NAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIV 254
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
+ ST VT + F R+ + + +AGD + L ED+ G+ VT P
Sbjct: 255 GIRPSTTKTTVTGVEMF----RKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGTTTP 310
Query: 305 -------LPILHIDEPTLQMTFLANNSP 325
+ IL DE F N P
Sbjct: 311 HTEFEGQVYILSKDEGGRHTPFFNNYRP 338
emb|CAA90881| (Z54170) elongation factor EF-Tu [Rickettsia prowazekii]
Length = 394
Score = 90.5 bits (221), Expect = 4e-17
Identities = 77/301 (25%), Positives = 134/301 (43%), Gaps = 22/301 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKT+L + K A +D+ E+ERGITI + E
Sbjct: 14 NIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETQ 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + +VV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPAMVV 133
Query: 133 ----VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
V+ +D P E+V+ EV EL + G ++ P++ SA+ + +
Sbjct: 134 FLNKVDMVDDPDL--LELVEMEVRELLSKYGFPGNEI--PIIKGSALQA----LEGKPEG 185
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
E + + + + +IP P++ D+P + + IKVG+ + +
Sbjct: 186 EKAINELMNAVDTYIPQPIELQDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI 245
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVE 303
L KN + T G + R+ + E ++GD + + + E++ G+ + ++
Sbjct: 246 VGL----KNTQKTTCTG-VEMFRKLLDEGQSGDNVGILLRGTKREEVERGQVLAKPGSIK 300
Query: 304 P 304
P
Sbjct: 301 P 301
sp|P31501|EFTU_MYCTU ELONGATION FACTOR TU (EF-TU) >gi|282523|pir||A44795 translation
elongation factor Tu - Mycobacterium tuberculosis
>gi|581383|emb|CAA45102| (X63539) elongation factor TU
[Mycobacterium tuberculosis] >gi|1806151|emb|CAB06471|
(Z84395) tuf [Mycobacterium tuberculosis]
Length = 396
Score = 90.5 bits (221), Expect = 4e-17
Identities = 91/328 (27%), Positives = 140/328 (41%), Gaps = 25/328 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLK--QSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ I HVDHGKTTL + K + D + A +D+ E++RGITI + +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLHDKFPDLNETKAFDQIDNAPEERQRGITINIAHVEYQ 73
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + + I
Sbjct: 74 TDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYI 133
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIE--LGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
+V ++K A E + E++E+ + L A + D PVV SA+ + A E
Sbjct: 134 LVA--LNKADAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKALEGDAKWVASVE 191
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
M + + + IP PV +D+P V + I V + V +
Sbjct: 192 ELM----NAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVINVNEEVEIV 247
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
+ ST VT + F R+ + + +AGD + L ED+ G+ VT P
Sbjct: 248 GIRPSTTKTTVTGVEMF----RKLLDQGQAGDNVGLLLRGVKREDVERGQVVTKPGTTTP 303
Query: 305 -------LPILHIDEPTLQMTFLANNSP 325
+ IL DE F N P
Sbjct: 304 HTEFEGQVYILSKDEGGRHTPFFNNYRP 331
dbj|BAA02982.2| (D13869) elongation factor Tu [Mycobacterium leprae]
Length = 396
Score = 90.1 bits (220), Expect = 5e-17
Identities = 88/328 (26%), Positives = 142/328 (42%), Gaps = 25/328 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLK--QSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ I HVDHGKTTL + K + + + A +D+ E++RGITI + +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLHDKFPNLNESRAFDQIDNAPEERQRGITINISHVEYQ 73
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + I
Sbjct: 74 TEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYI 133
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIE--LGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
+V ++K A E + E++E+ + L A + D PVV SA+ + A
Sbjct: 134 LVA--LNKSDAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKA----LEGDAKWV 187
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
++ + D + + IP PV +D+P V + + V + V +
Sbjct: 188 ESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIV 247
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETV----TPSD 300
+ +T VT + F R+ + + +AGD + L ED+ G+ V T +
Sbjct: 248 GIRQTTTKTTVTGVEMF----RKLLDQGQAGDNVGLLLRGIKREDVERGQVVIKPGTTTP 303
Query: 301 HVE---PLPILHIDEPTLQMTFLANNSP 325
H E + IL DE F N P
Sbjct: 304 HTEFEGQVYILSKDEGGRHTPFFNNYRP 331
sp|P48865|EFTU_RICPR ELONGATION FACTOR TU (EF-TU) >gi|3861201|emb|CAA15101| (AJ235272)
ELONGATION FACTOR TU (tuf) [Rickettsia prowazekii]
Length = 394
Score = 90.1 bits (220), Expect = 5e-17
Identities = 77/301 (25%), Positives = 134/301 (43%), Gaps = 22/301 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKT+L + K A +D+ E+ERGITI + E
Sbjct: 14 NIGTIGHVDHGKTSLTAAITIILAKTGGAKATAYDQIDAAPEEKERGITISTAHVEYETQ 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + +VV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPAMVV 133
Query: 133 ----VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
V+ +D P E+V+ EV EL + G ++ P++ SA+ + +
Sbjct: 134 FLNKVDMVDDPDL--LELVEMEVRELLSKYGFPGNEI--PIIKGSALQA----LEGKPEG 185
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
E + + + + +IP P+ +D+P + + IKVG+ + +
Sbjct: 186 EKAINELMNAVDSYIPQPIRATDKPFLMPIEDVFSISGRGTVVTGRVESGIIKVGEEIEI 245
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVE 303
L KN + T G + R+ + E ++GD + + + E++ G+ + ++
Sbjct: 246 VGL----KNTQKTTCTG-VEMFRKLLDEGQSGDNVGILLRGTKREEVERGQVLAKPGSIK 300
Query: 304 P 304
P
Sbjct: 301 P 301
pir||S38928 elongation factor G - Aquifex pyrophilus (fragment)
Length = 684
Score = 90.1 bits (220), Expect = 5e-17
Identities = 60/167 (35%), Positives = 90/167 (52%), Gaps = 14/167 (8%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQE-RGITILAKNT 67
E +RN+ ++AH+D GKTT + + + + E+ E A + + ++ GITI A T
Sbjct: 8 EKLRNIGIVAHIDAGKTTTTERIPTTGKDIQIG-EVTEGAATMDWMPRKGAGITITAATT 66
Query: 68 AVEY--NGTR--INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL 123
A + NG R INI+DTPGH DF EV R MK++DG+V + A EG PQ+ + A
Sbjct: 67 ACYWTRNGERYQINIIDTPGHVDFSVEVVRSMKVLDGIVFIFSAVEGVQPQSEANWRWAD 126
Query: 124 EQNLTPIVVVNKIDKPSARPAEVVDEVLE--------LFIELGADDE 162
+ I +NK+D+ A V E+ E + I LGA+D+
Sbjct: 127 RFKVPRIAFINKMDRLGADFYRVFKEIEEKLTIKPVAIQIPLGAEDQ 173
Score = 72.2 bits (174), Expect = 1e-11
Identities = 86/365 (23%), Positives = 150/365 (40%), Gaps = 66/365 (18%)
Query: 53 ALEQERGITILAKNTAVEYN----GTRINILDTP-GHADFGGE-----VERIMKMVDGVV 102
A +Q G+ L + A+ + G + ++D P G+ + E +E I++ D ++
Sbjct: 170 AEDQFEGVIDLMEMKAIRWLEVTLGAKYEVIDIPPGYQEKAQEWREKMIETIVETDDELM 229
Query: 103 -LVVDAYEGTMPQTRFVLKKA-LEQNLTPIVVVNKIDKPSARPAEVVDEVLELFIELGAD 160
++A E T+ + R L+KA + + L P++ + +P ++D V+ +
Sbjct: 230 EKYLEAQEITLEELRKALRKATINRQLVPVLCGSAFKNKGVQP--LLDAVIVTY------ 281
Query: 161 DEQLDFPVVYASAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLL 220
+D P V + N P D+E A F + D
Sbjct: 282 PLPIDLPPVKGTNPNTGEEEERRPLDEEPFCAYAFKVMAD-------------------- 321
Query: 221 DYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
Y T+K G V + D + R +L R+EIQ+ AG+
Sbjct: 322 ---PYAGQLTYIRVFSGTLKAGSYVYNATRD---EKQRAGRLLLMHANSREEIQQVSAGE 375
Query: 281 LIALSGMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVE 340
+ A+ G+ D G+T+ H L L +P + M E K ++K +
Sbjct: 376 ICAVVGL-DAATGDTLCDEKHPIILEKLEFPDPVISMAI----------EPK---TKKDQ 421
Query: 341 ERL-----VSELQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRRE-GYELQVSRPE 394
E+L +S L+ D + R + ++ G GELHL I+++ MRRE G E+ V +P+
Sbjct: 422 EKLSQVLNLSSLKEDPTFRATTDPETGQILIHGMGELHLEIMVDRMRREYGIEVNVGKPQ 481
Query: 395 VIIKE 399
V KE
Sbjct: 482 VAYKE 486
Score = 47.6 bits (111), Expect = 3e-04
Identities = 26/79 (32%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Query: 393 PEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKGDMLDMQITGNGQARLIFLVP 452
P + D V EP V+++TPE+Y G +I L+ R+G ++ M+ GN + VP
Sbjct: 588 PRTRQRTADPVLLEPIMEVEVETPEDYVGDVIGDLNSRRGTIMGMENKGNITV-VKAHVP 646
Query: 453 ARGLIGFTTEFMSMTRGYG 471
+ G+ T S+T+G G
Sbjct: 647 LAEMNGYATTLRSLTQGRG 665
pir||JC2262 translation elongation factor Tu - Mycobacterium leprae
Length = 396
Score = 90.1 bits (220), Expect = 5e-17
Identities = 88/328 (26%), Positives = 142/328 (42%), Gaps = 25/328 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLK--QSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ I HVDHGKTTL + K + + + A +D+ E++RGITI + +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLHDKFPNLNESRAFDQIDNAPEERQRGITINISHVEYQ 73
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + I
Sbjct: 74 TEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYI 133
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIE--LGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
+V ++K A E + E++E+ + L A + D PVV SA+ + A
Sbjct: 134 LVA--LNKSDAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKA----LEGDAKWV 187
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
++ + D + + IP PV +D+P V + + V + V +
Sbjct: 188 ESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIV 247
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETV----TPSD 300
+ +T VT + F R+ + + +AGD + L ED+ G+ V T +
Sbjct: 248 GIRQTTTKTTVTGVEMF----RKLLDQGQAGDNVGLLLRGIKREDVERGQVVIKPGTTTP 303
Query: 301 HVE---PLPILHIDEPTLQMTFLANNSP 325
H E + IL DE F N P
Sbjct: 304 HTEFEGQVYILSKDEGGRHTPFFNNYRP 331
sp|P30768|EFTU_MYCLE ELONGATION FACTOR TU (EF-TU) >gi|479624|pir||S34954 elongation
factor Tu - Mycobacterium leprae >gi|293242 (L13276)
peptide elongation factor Tu [Mycobacterium leprae]
Length = 396
Score = 90.1 bits (220), Expect = 5e-17
Identities = 88/328 (26%), Positives = 142/328 (42%), Gaps = 25/328 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLK--QSQTLDARKELAERAMDSNALEQERGITILAKNTAVE 70
N+ I HVDHGKTTL + K + + + A +D+ E++RGITI + +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITKVLHDKFPNLNESRAFDQIDNAPEERQRGITINISHVEYQ 73
Query: 71 YNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPI 130
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + I
Sbjct: 74 TEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVPYI 133
Query: 131 VVVNKIDKPSARPAEVVDEVLELFIE--LGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
+V ++K A E + E++E+ + L A + D PVV SA+ + A
Sbjct: 134 LVA--LNKSDAVDDEELLELVEMEVRELLAAQEFDEDAPVVRVSALKA----LEGDAKWV 187
Query: 189 HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLS 248
++ + D + + IP PV +D+P V + + V + V +
Sbjct: 188 ESVTQLMDAVDESIPAPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGVVNVNEEVEIV 247
Query: 249 KLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETV----TPSD 300
+ +T VT + F R+ + + +AGD + L ED+ G+ V T +
Sbjct: 248 GIRQTTTKTTVTGVEMF----RKLLDQGQAGDNVGLLLRGIKREDVERGQVVIKPGTTTP 303
Query: 301 HVE---PLPILHIDEPTLQMTFLANNSP 325
H E + IL DE F N P
Sbjct: 304 HTEFEGQVYILSKDEGGRHTPFFNNYRP 331
emb|CAB62091.1| (AL133303) putative elongation factor G, mitochondrial 1 precursor
(EF-G) [Schizosaccharomyces pombe]
Length = 252
Score = 89.7 bits (219), Expect = 6e-17
Identities = 57/168 (33%), Positives = 86/168 (50%), Gaps = 23/168 (13%)
Query: 6 KLREDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER-----AMDSNALEQERGI 60
K + IRN+ + AH+D GKTT + +L + + E+ + MD LE+E+GI
Sbjct: 54 KRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGI 113
Query: 61 TILAKNTAVEYNGT------------------RINILDTPGHADFGGEVERIMKMVDGVV 102
TI + T + T INI+DTPGH DF EVER ++++DG V
Sbjct: 114 TIQSAATHCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAV 173
Query: 103 LVVDAYEGTMPQTRFVLKKALEQNLTPIVVVNKIDKPSARPAEVVDEV 150
LV+ A G QT V ++ N+ I VNK+D+ A P +V+ ++
Sbjct: 174 LVLCAVSGVQSQTITVDRQMRRYNVPRISFVNKMDRMGADPWKVIQQI 221
ref|NP_035561.1|| U5 small nuclear ribonucleoprotein 116 kDa >gi|2105430 (U97079)
U5-116kD [Mus musculus]
Length = 971
Score = 89.7 bits (219), Expect = 6e-17
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNAL--EQERGITILAKN 66
E IRNV + H+ HGKT VD L++Q+ + RK + ++ L EQERG+ I +
Sbjct: 126 ELIRNVTLCGHLHHGKTCFVDCLIEQTHP-EIRKRYDQDLCYTDILFTEQERGVGIKSTP 184
Query: 67 TAVEYNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
V T+ NI+DTPGH +F EV +++ DGVVL +DA EG M T ++K
Sbjct: 185 VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH 244
Query: 122 ALEQNLTPIVVVNKIDK 138
A+++ L V +NKID+
Sbjct: 245 AVQERLAVTVCINKIDR 261
ref|NP_004238.1|| U5 snRNP-specific protein, 116 kD >gi|434759|dbj|BAA04699| (D21163)
similar to human elongation factor 2 mRNA (HSEF2). [Homo
sapiens]
Length = 972
Score = 89.7 bits (219), Expect = 6e-17
Identities = 54/137 (39%), Positives = 79/137 (57%), Gaps = 8/137 (5%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNAL--EQERGITILAKN 66
E IRNV + H+ HGKT VD L++Q+ + RK + ++ L EQERG+ I +
Sbjct: 127 ELIRNVTLCGHLHHGKTCFVDCLIEQTHP-EIRKRYDQDLCYTDILFTEQERGVGIKSTP 185
Query: 67 TAVEYNGTR-----INILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKK 121
V T+ NI+DTPGH +F EV +++ DGVVL +DA EG M T ++K
Sbjct: 186 VTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTERLIKH 245
Query: 122 ALEQNLTPIVVVNKIDK 138
A+++ L V +NKID+
Sbjct: 246 AVQERLAVTVCINKIDR 262
sp|P02991|EFTU_EUGGR ELONGATION FACTOR TU (EF-TU) >gi|72865|pir||EFEGT translation
elongation factor Tu - Euglena gracilis chloroplast
>gi|311712|emb|CAA24925| (X00044) elongation factor Tu
[Euglena gracilis] >gi|312223|emb|CAA29599| (X06254)
EF-Tu [Euglena gracilis] >gi|415743|emb|CAA50087|
(X70810) elongation factor Ef-Tu [Euglena gracilis]
>gi|1163049|emb|CAA77904| (Z11874) elongation factor Tu
[Euglena gracilis]
Length = 409
Score = 89.7 bits (219), Expect = 6e-17
Identities = 79/282 (28%), Positives = 129/282 (45%), Gaps = 18/282 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K +DS E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMALAATGNSKAKRYEDIDSAPEEKARGITINTAHVEYETK 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQT+ + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQL---DFPVVYASAINGSSSMSDNPADQE 188
+NK D+ +E++ E++EL I + + D PV+ SA+ +++ NP +
Sbjct: 134 FLNKEDQ--VDDSELL-ELVELEIRETLSNYEFPGDDIPVIPGSALLSVEALTKNPKITK 190
Query: 189 ------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
+ N+ D + +IP P ++++ + + TIKVG
Sbjct: 191 GENKWVDKILNLMDQVDSYIPTPTRDTEKDFLMAIEDVLSITGRGTVATGRVERGTIKVG 250
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
++V L L K+ R T + G + ++ + EA AGD + +
Sbjct: 251 ETVELVGL----KDTRSTTITG-LEMFQKSLDEALAGDNVGV 287
sp|P13537|EFTU_THEMA ELONGATION FACTOR TU (EF-TU) >gi|4982068|gb|AAD36569.1|AE001799_1
(AE001799) translation elongation factor Tu [Thermotoga
maritima]
Length = 400
Score = 89.3 bits (218), Expect = 8e-17
Identities = 80/301 (26%), Positives = 131/301 (42%), Gaps = 17/301 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I H+DHGK+TL + K + + +D E+ RGITI + E
Sbjct: 14 NVGTIGHIDHGKSTLTAAITKYLSLKGLAQYIPYDQIDKAPEEKARGITINITHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR-FVLKKALEQNLTPIV 131
+D PGHAD+ + +DG +LVV A +G MPQTR VL + IV
Sbjct: 74 KRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVEVPYMIV 133
Query: 132 VVNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
+NK D E++D EV +L + G +++ PV+ SA+ + +D +
Sbjct: 134 FINKTD--MVDDPELIDLVEMEVRDLLSQYGYPGDEV--PVIRGSALKAVEAPNDPNHEA 189
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
+ + D + ++IP P + D+P + + I+ GD V +
Sbjct: 190 YKPIQELLDAMDNYIPDPQRDVDKPFLMPIEDVFSITGRGTVVTGRIERGRIRPGDEVEI 249
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGETVTPSDHVE 303
L K VT + F R+E+ E AGD + L G+ +++ G+ + ++
Sbjct: 250 IGLSYEIKKTVVTSVEMF----RKELDEGIAGDNVGCLLRGIDKDEVERGQVLAAPGSIK 305
Query: 304 P 304
P
Sbjct: 306 P 306
sp|P28371|EFG1_SYNY3 ELONGATION FACTOR G 1 (EF-G 1) >gi|1653752|dbj|BAA18663| (D90916)
elongation factor EF-G [Synechocystis sp.]
Length = 695
Score = 88.9 bits (217), Expect = 1e-16
Identities = 54/159 (33%), Positives = 85/159 (52%), Gaps = 5/159 (3%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKNTAV 69
RN+ + AHVD GKTT + +LK + + E+ E MD E ERGITI + T+
Sbjct: 9 RNIGIFAHVDAGKTTTTERILKLTGRIHKLGEVHEGESTMDFMEQEAERGITIQSAATSC 68
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
+ ++N++DTPGH DF EV R +K++DG + V G PQ+ + A + +
Sbjct: 69 FWKDHQLNVIDTPGHVDFTIEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVAR 128
Query: 130 IVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
++ +NK+D+ A VV +V + LGA + P+
Sbjct: 129 LIYINKLDRTGADFYRVVKQVETV---LGAKPLVMTLPI 164
Score = 71.8 bits (173), Expect = 2e-11
Identities = 66/294 (22%), Positives = 124/294 (41%), Gaps = 47/294 (15%)
Query: 143 PAEVVDEVL---ELFIELGADD-----------EQLDFPVVYASAINGSSSMSDNPADQE 188
PA++VD+V E+ IE + E++ + G+ + P
Sbjct: 199 PADMVDDVATYREMLIETAVEQDDDLMEKYLEGEEISIDDIKRCIRTGTRKLDFFPTYGG 258
Query: 189 HTMAN-----IFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ N + D ++D++P P + +P + + + +Y K+ D
Sbjct: 259 SSFKNKGVQLVLDAVVDYLPNPKEVPPQP-EVDLEGEETGNYAIVDPEAPLRALAFKIMD 317
Query: 244 ------------SVTLSKLD-----GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSG 286
S TLSK D + K R+ +L R+EI+ A+AGD++A+ G
Sbjct: 318 DRFGALTFTRIYSGTLSKGDTILNTATGKTERIGRLVEMHADSREEIESAQAGDIVAIVG 377
Query: 287 MEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSE 346
M+++ G T+ + L + +P + + A + K K+ L
Sbjct: 378 MKNVQTGHTLCDPKNPATLEPMVFPDPVISI---------AIKPKKKGMDEKLGMALSKM 428
Query: 347 LQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRR-EGYELQVSRPEVIIKE 399
+Q D S +VE E + ++ G GELHL I ++ ++R G E+++ +P+V +E
Sbjct: 429 VQEDPSFQVETDEESGETIIKGMGELHLDIKMDILKRTHGVEVEMGKPQVAYRE 482
Score = 50.8 bits (119), Expect = 3e-05
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 375 SILIETMRREGYE--LQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKG 432
+I E + GY L ++P+++ EP V + TPE++ G +I L+ R+G
Sbjct: 576 AIAFEIAAKAGYRQSLPKAKPQIL---------EPIMAVDVFTPEDHMGDVIGDLNRRRG 626
Query: 433 DMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLP 482
M+ Q TG R+ VP + G+ + +MT G G + FD Y P
Sbjct: 627 -MIKSQETGPMGVRVKADVPLSEMFGYIGDLRTMTSGRGQFSMVFDHYAP 675
pir||S20656 translation elongation factor G - Synechocystis sp
>gi|46483|emb|CAA46277| (X65159) elongation factor G
[Synechocystis PCC6803]
Length = 695
Score = 88.9 bits (217), Expect = 1e-16
Identities = 54/159 (33%), Positives = 85/159 (52%), Gaps = 5/159 (3%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQSQTLDARKEL--AERAMDSNALEQERGITILAKNTAV 69
RN+ + AHVD GKTT + +LK + + E+ E MD E ERGITI + T+
Sbjct: 9 RNIGIFAHVDAGKTTTTERILKLTGRIHKLGEVREGESTMDFMEQEAERGITIQSAATSC 68
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
+ ++N++DTPGH DF EV R +K++DG + V G PQ+ + A + +
Sbjct: 69 FWKDHQLNVIDTPGHVDFTIEVYRSLKVLDGGIGVFCGSGGVEPQSETNWRYANDSKVAR 128
Query: 130 IVVVNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPV 168
++ +NK+D+ A VV +V + LGA + P+
Sbjct: 129 LIYINKLDRTGADFYRVVKQVETV---LGAKPLVMTLPI 164
Score = 71.8 bits (173), Expect = 2e-11
Identities = 66/294 (22%), Positives = 124/294 (41%), Gaps = 47/294 (15%)
Query: 143 PAEVVDEVL---ELFIELGADD-----------EQLDFPVVYASAINGSSSMSDNPADQE 188
PA++VD+V E+ IE + E++ + G+ + P
Sbjct: 199 PADMVDDVATYREMLIETAVEQDDDLMEKYLEGEEISIDDIKRCIRTGTRKLDFFPTYGG 258
Query: 189 HTMAN-----IFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ N + D ++D++P P + +P + + + +Y K+ D
Sbjct: 259 SSFKNKGVQLVLDAVVDYLPNPKEVPPQP-EVDLEGEETGNYAIVDPEAPLRALAFKIMD 317
Query: 244 ------------SVTLSKLD-----GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSG 286
S TLSK D + K R+ +L R+EI+ A+AGD++A+ G
Sbjct: 318 DRFGALTFTRIYSGTLSKGDTILNTATGKTERIGRLVEMHADSREEIESAQAGDIVAIVG 377
Query: 287 MEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSE 346
M+++ G T+ + L + +P + + A + K K+ L
Sbjct: 378 MKNVQTGHTLCDPKNPATLEPMVFPDPVISI---------AIKPKKKGMDEKLGMALSKM 428
Query: 347 LQTDVSLRVENTESPDKWVVSGRGELHLSILIETMRR-EGYELQVSRPEVIIKE 399
+Q D S +VE E + ++ G GELHL I ++ ++R G E+++ +P+V +E
Sbjct: 429 VQEDPSFQVETDEESGETIIKGMGELHLDIKMDILKRTHGVEVEMGKPQVAYRE 482
Score = 50.8 bits (119), Expect = 3e-05
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 375 SILIETMRREGYE--LQVSRPEVIIKEIDGVACEPFERVQIDTPEEYQGSIIQALSERKG 432
+I E + GY L ++P+++ EP V + TPE++ G +I L+ R+G
Sbjct: 576 AIAFEIAAKAGYRQSLPKAKPQIL---------EPIMAVDVFTPEDHMGDVIGDLNRRRG 626
Query: 433 DMLDMQITGNGQARLIFLVPARGLIGFTTEFMSMTRGYGIMNHTFDQYLP 482
M+ Q TG R+ VP + G+ + +MT G G + FD Y P
Sbjct: 627 -MIKSQETGPMGVRVKADVPLSEMFGYIGDLRTMTSGRGQFSMVFDHYAP 675
gb|AAF09890.1|AE001892_1 (AE001892) elongation factor TU [Deinococcus radiodurans]
>gi|6459842|gb|AAF11600.1|AE002041_4 (AE002041)
elongation factor TU [Deinococcus radiodurans]
Length = 405
Score = 88.5 bits (216), Expect = 1e-16
Identities = 95/355 (26%), Positives = 149/355 (41%), Gaps = 21/355 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKE-LAERAMDSNALEQERGITILAKNTAVEY 71
N+ I HVDHGKTTL + + + D E LA +D E+ RGITI + +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITFTAASADPTIETLAYDQIDKAPEEKARGITINTAHVEYQT 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LVV + +G MPQTR + A + + IV
Sbjct: 74 ETRHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMPQTREHILLARQVGVPYIV 133
Query: 132 V-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE 188
V +NK+D E+V+ EV EL + + D PVV SA+ ++ NP
Sbjct: 134 VFMNKVDMVDDEELLELVEMEVRELLSKYEFPGD--DLPVVKGSALRALEALQSNPKMAR 191
Query: 189 HT------MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
T + + D + +IP P ++D+ V + T+KV
Sbjct: 192 GTDKWVDYIWELLDAVDSYIPTPERDTDKTFLMPVEDVFTITGRGTVATGRVERGTVKVQ 251
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGETVTP 298
D V + L + K T + G + R+ + AGD + L G+ +D+ G+ +
Sbjct: 252 DEVEIVGLTDTRK----TTVTG-IEMHRKLLDSGMAGDNVGVLLRGVARDDVERGQVLAK 306
Query: 299 SDHVEPLPILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSL 353
++P L +S F G R + V ELQ V +
Sbjct: 307 PGSIKPHTKFEASVYVLSKDEGGRHSAFFGGYRPQFYFRTTDVTGVVELQEGVEM 361
pir||A48314 translation elongation factor Tu - Thermotoga maritima >gi|552037
(M27479) protein [Thermotoga maritima]
>gi|226378|prf||1509263A elongation factor Tu
[Thermotoga maritima]
Length = 400
Score = 88.5 bits (216), Expect = 1e-16
Identities = 80/301 (26%), Positives = 131/301 (42%), Gaps = 17/301 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I H+DHGK+TL + K + + +D E+ RGITI + E
Sbjct: 14 NVGTIGHIDHGKSTLTAAITKYLSLKVLAQYIPYDQIDKAPEEKARGITINITHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR-FVLKKALEQNLTPIV 131
+D PGHAD+ + +DG +LVV A +G MPQTR VL + IV
Sbjct: 74 KRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVEVPYMIV 133
Query: 132 VVNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
+NK D E++D EV +L + G +++ PV+ SA+ + +D +
Sbjct: 134 FINKTD--MVDDPELIDLVEMEVRDLLSQYGYPGDEV--PVIRGSALKAVEAPNDPNHEA 189
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
+ + D + ++IP P + D+P + + I+ GD V +
Sbjct: 190 YKPIQELLDAMDNYIPDPQRDVDKPFLMPIEDVFSITGRGTVVTGRIERGRIRPGDEVEI 249
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGETVTPSDHVE 303
L K VT + F R+E+ E AGD + L G+ +++ G+ + ++
Sbjct: 250 IGLSYEIKKTVVTSVEMF----RKELDEGIAGDNVGCLLRGIDKDEVERGQVLAAPGSIK 305
Query: 304 P 304
P
Sbjct: 306 P 306
sp|O50340|EFTU_FERIS ELONGATION FACTOR TU (EF-TU) >gi|2687830|emb|CAA75782| (Y15788)
elongation factor Tu [Fervidobacterium islandicum]
Length = 399
Score = 88.2 bits (215), Expect = 2e-16
Identities = 83/314 (26%), Positives = 137/314 (43%), Gaps = 17/314 (5%)
Query: 1 MIKLTKLR-EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERG 59
M K+T +R + NV I +DHGKTTL + K +D E+ RG
Sbjct: 1 MAKVTFVRTKPHMNVGTIGQIDHGKTTLTAAITKYCSFFGWADYTPYEMIDKAPEERARG 60
Query: 60 ITILAKNTAVEYNGTRINI--LDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRF 117
ITI T VEY + + +D PGHAD+ + +DG +LV+ A +G MPQTR
Sbjct: 61 ITI--NITHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVLAATDGPMPQTRE 118
Query: 118 VLKKALEQNLTPIVV-VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAIN 175
+ A + N+ ++V +NK+D ++V+ EV +L + +++ PVV SA+
Sbjct: 119 HVLLARQVNVPAMIVFINKVDMVDPELVDLVEMEVRDLLSKYEFPGDEV--PVVRGSALK 176
Query: 176 GSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXX 235
+ +D + + D + + P PV D+P + +
Sbjct: 177 AIEAPNDPNDPAYKPIKELLDAMDTYFPDPVREVDKPFLMPIEDVFSITGRGTVVTGRIE 236
Query: 236 XXTIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIF 291
IK G + + K +T + F R+E+ EA AGD L+ S +++
Sbjct: 237 RGVIKPGVEAEIIGMSYEIKKTVITSVEMF----RKELDEAIAGDNVGCLLRGSSKDEVE 292
Query: 292 VGETVTPSDHVEPL 305
G+ + + PL
Sbjct: 293 RGQVLAKPGSITPL 306
sp|P42472|EFTU_CHLAU ELONGATION FACTOR TU (EF-TU) >gi|2119919|pir||I40602 elongation
factor Tu - Chloroflexus aurantiacus (fragment)
>gi|560808|emb|CAA54193| (X76864) elongation factor Tu
[Chloroflexus aurantiacus]
Length = 382
Score = 88.2 bits (215), Expect = 2e-16
Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 13/294 (4%)
Query: 19 HVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYNGTRINI 78
HVDHGKTTL + K A + +A +D+ E+ RGITI ++ + +
Sbjct: 1 HVDHGKTTLTAAITKVMSLKGAAQFMAYDQIDNAPEERARGITIAIRHVEYQTDKRHYAH 60
Query: 79 LDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV-VNKID 137
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV +NK+D
Sbjct: 61 VDCPGHADYIKNMITGAAQMDGAILVVSAPDGPMPQTREHILLARQVQVPAIVVFLNKVD 120
Query: 138 -KPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMS-DNPADQEHTMANI 194
E+V+ E+ EL + G +++ P+V +A N S S D A + + +
Sbjct: 121 MMDDPELLELVELELRELLSKYGFPGDEI--PIVRGTARNALESPSKDINAPEYKCILEL 178
Query: 195 FDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLDGST 254
+ + ++IP P D+P + + +KVGD+V + +
Sbjct: 179 MNAVDEYIPTPQRAVDQPFLMPIEDVFGIKGRGTVVTGRIERGKVKVGDTVEIVGMTNDA 238
Query: 255 KNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGME--DIFVGETVTPSDHVEP 304
V F ++ + E AGD + L G+E D+ G+ + ++P
Sbjct: 239 PRRTVVTGVEMF---QKTLDEGIAGDNVGCLLRGIERTDVERGQVLCAPGSIKP 289
pir||S41612 translation elongation factor G, chloroplast - garden pea
(fragment)
Length = 128
Score = 87.8 bits (214), Expect = 2e-16
Identities = 47/116 (40%), Positives = 70/116 (59%), Gaps = 2/116 (1%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE--RAMDSNALEQERGITILAKN 66
+D RN+ ++AH+D GKTT + +L + E+ E MD EQERGITI +
Sbjct: 4 KDYRNIGIMAHIDAGKTTTTERILFYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAA 63
Query: 67 TAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKA 122
T ++ RINI+DTPGH DF EVER ++++DG + + D+ G PQ+ V ++A
Sbjct: 64 TTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQA 119
sp|P14634|EFTU_ASTLO ELONGATION FACTOR TU (EF-TU) >gi|72866|pir||EFITT translation
elongation factor Tu - euglenid (Astasia longa) plastid
>gi|414923|emb|CAA53319| (X75652) elongation factor
Ef-Tu [Astasia longa] >gi|4468077|emb|CAB37997| (X14385)
elongation factor Tu [Astasia longa]
Length = 409
Score = 87.8 bits (214), Expect = 2e-16
Identities = 72/281 (25%), Positives = 125/281 (43%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K +DS+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMALSVTGNTKSKKYEEIDSSPEEKARGITINTAHVEYETK 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LV+ A +G MPQT+ + A + + +VV
Sbjct: 74 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVISATDGPMPQTKEHILLAKQVGVPNLVV 133
Query: 133 VNKIDKPSARPAEVVDEVLELFIELGADDEQL---DFPVVYASAINGSSSMSDNPA---- 185
++K + E++EL I ++ + + P++ SA+ +++ NP
Sbjct: 134 F--LNKEDQIDDNELLELIELEIRETLNNYEFPGDEIPIITGSALLAIEALNKNPKIIKG 191
Query: 186 --DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ ++ D I +IP P+ ++D+ + + IKVG+
Sbjct: 192 ENKWVDKILDLMDKIDSYIPTPIRDTDKDFLLAIEDVLSITGRGTVATGRIERGKIKVGE 251
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+V L L KN + T + G + ++ + EA AGD + +
Sbjct: 252 TVELIGL----KNIKSTTITG-LEMFQKSLDEAIAGDNVGV 287
sp|P48863|EF1A_HALHA ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (ELONGATION FACTOR TU)
(EF-TU) >gi|509674|dbj|BAA06845| (D32120) elongation
factor 1alpha [Halobacterium halobium]
>gi|1583107|prf||2120229A elongation factor 1alpha
[Halobacterium halobium]
Length = 421
Score = 87.8 bits (214), Expect = 2e-16
Identities = 93/337 (27%), Positives = 143/337 (41%), Gaps = 51/337 (15%)
Query: 12 RNVAVIAHVDHGKTTLVDELLKQS-----QTLDARKELAER----------AMDSNALEQ 56
+N+AVI HVDHGK+T+V LL ++ ++ KE AE MD+ A E+
Sbjct: 7 QNLAVIGHVDHGKSTMVGRLLYETGSVPEHVIEQHKEEAEEEGKGGFEFAYVMDNLAEER 66
Query: 57 ERGITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTR 116
ERG+TI + + I+D PGH DF + D VLVV A +G PQTR
Sbjct: 67 ERGVTIDIAHQEFTTDEYEFTIVDCPGHRDFVKNMITGASQADNAVLVVAADDGVAPQTR 126
Query: 117 --FVLKKALEQNLTPIVVVNK---IDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYA 171
L + L + IV VNK +D ++ EVV V +LF ++G + + F A
Sbjct: 127 EHVFLSRTLGID-ELIVAVNKMDVVDYDESKYNEVVSGVKDLFGQVGFNPDDAKFIATSA 185
Query: 172 SAINGSSSMSDN-PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXX 230
+ S SDN P T+ ++ +P P +D L+ + +
Sbjct: 186 FEGDNVSDHSDNTPWYDGPTLLE----ALNGLPVPQPPTDADLRLPIQDVYTISGIGTVP 241
Query: 231 XXXXXXXTIKVGDSVTL--SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALS--- 285
+ GD+V+ S + G K + +E+ A+ GD + +
Sbjct: 242 VGRIETGVMNTGDNVSFQPSDVGGEVKTIE---------MHHEEVPNAEPGDNVGFNVRG 292
Query: 286 -GMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLA 321
G +DI G+ P+D D P++ TF A
Sbjct: 293 IGKDDIRRGDVCGPAD----------DPPSVADTFQA 319
sp|P17245|EFTU_CYAPA ELONGATION FACTOR TU (EF-TU) >gi|1016151 (U30821) protein synthesis
elongation factor Tu [Cyanophora paradoxa]
Length = 409
Score = 87.4 bits (213), Expect = 3e-16
Identities = 83/281 (29%), Positives = 125/281 (43%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + K +D+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDEIDAAPEEKARGITINTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + +VV
Sbjct: 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNMVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE- 188
+NK D+ A E+V+ EV EL + +Q+ P V SA+ S+S NP
Sbjct: 134 FLNKEDQIDDADLLELVELEVRELLSKYDFPGDQI--PFVSGSALLALESLSSNPKLMRG 191
Query: 189 -----HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + D + ++IP P D+ + + IKVG+
Sbjct: 192 EDKWVDKILALMDAVDEYIPTPERPIDKSFLMAIEDVFSITGRGTVATGRIERGAIKVGE 251
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+V L L TK+ VT L F ++ ++E AGD I +
Sbjct: 252 TVELVGLK-DTKSTTVTGLEMF----QKTLEEGMAGDNIGI 287
pir||EFKTT translation elongation factor Tu - Cyanophora paradoxa cyanelle
>gi|11416|emb|CAA36740| (X52497) tufA gene product (AA
1-409) [Cyanophora paradoxa]
Length = 409
Score = 87.4 bits (213), Expect = 3e-16
Identities = 83/281 (29%), Positives = 125/281 (43%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + + K +D+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDEIDAAPEEKARGITINTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + +VV
Sbjct: 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNMVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE- 188
+NK D+ A E+V+ EV EL + +Q+ P V SA+ S+S NP
Sbjct: 134 FLNKEDQIDDADLLELVELEVRELLSKYDFPGDQI--PFVSGSALLALESLSSNPKLMRG 191
Query: 189 -----HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + D + ++IP P D+ + + IKVG+
Sbjct: 192 EDKWVDKILALMDAVDEYIPTPERPIDKSFLMAIEDVFSITGRGTVATGRIERGAIKVGE 251
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+V L L TK+ VT L F ++ ++E AGD I +
Sbjct: 252 TVELVGLK-DTKSTTVTGLEMF----QKTLEEGMAGDNIGI 287
sp|P19457|EFTU_GUITH ELONGATION FACTOR TU (EF-TU) >gi|3603069|gb|AAC35730| (AF041468)
elongation factor EF-Tu [Guillardia theta]
Length = 408
Score = 87.4 bits (213), Expect = 3e-16
Identities = 84/287 (29%), Positives = 129/287 (44%), Gaps = 29/287 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQ-SQTLDARKELAERAMDSNALEQERGITILAKNTAVEY 71
N+ I HVDHGKTTL + SQ K+ E +DS E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAISATLSQYTGKSKKFDE--IDSAPEERARGITINTAHVEYET 71
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+ +D PGHAD+ + +DG +LV A G MPQTR + A + + IV
Sbjct: 72 DKWYYAHVDCPGHADYVKNMITGAAQMDGAILVCSAANGPMPQTREHILLAKQVGVPYIV 131
Query: 132 V-VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDF-----PVVYASAINGSSSMSDN 183
V +NK D V DE L ++L + E+ DF P V SA+ ++++N
Sbjct: 132 VFLNKADM-------VDDEELLELVQLEVQELLEKYDFPGSEIPFVAGSALLALEAVANN 184
Query: 184 PADQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXX 237
P + T+ + D + ++IP P +D+ V +
Sbjct: 185 PTIKRGEDKWVDTIYQLMDKVDEYIPTPERETDKAFLMAVEDVFSITGRGTVATGRIERG 244
Query: 238 TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+KVGD++ + L T+N +T L F ++ + EA AGD + +
Sbjct: 245 KVKVGDTIEIVGL-RETRNTTITGLEMF----QKSLDEALAGDNVGI 286
sp|Q43467|EFT1_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR (EF-TU)
>gi|99903|pir||S21567 translation elongation factor Tu
precursor - soybean chloroplast >gi|18776|emb|CAA46864|
(X66062) EF-Tu [Glycine max] >gi|448921|prf||1918220A
elongation factor Tu [Glycine max]
Length = 479
Score = 87.4 bits (213), Expect = 3e-16
Identities = 85/286 (29%), Positives = 123/286 (42%), Gaps = 26/286 (9%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL L L +D+ E+ RGITI E
Sbjct: 84 NIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETE 143
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV +G MPQT+ + A + + +VV
Sbjct: 144 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIILAKQVGVPNMVV 203
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADD-------EQLDFPVVYASAINGSSSMSDNP 184
+NK D +V DE L +E+ D D P+V SA+ ++ NP
Sbjct: 204 FLNKQD-------QVDDEELLQLVEIEVRDLLSSYEFPGDDTPIVSGSALLALEALMANP 256
Query: 185 A----DQE--HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXT 238
A D E + + D + ++IP P +D P V + T
Sbjct: 257 AIKRGDNEWVDKIFQLMDEVDNYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 316
Query: 239 IKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
IKVG++V L L T+N VT + F ++ + EA AGD + L
Sbjct: 317 IKVGETVDLVGL-RETRNTTVTGVEMF----QKILDEALAGDNVGL 357
pir||I53499 P43 - human >gi|833999|bbs|160014 (S75463) P43=mitochondrial
elongation factor homolog [human, liver, Peptide, 452
aa] [Homo sapiens]
Length = 452
Score = 87.0 bits (212), Expect = 4e-16
Identities = 81/270 (30%), Positives = 123/270 (45%), Gaps = 13/270 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +D+ E+ RGITI A +
Sbjct: 62 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 121
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
D PGHAD+ + +DG +LVV A +G MPQTR L A + + +VV
Sbjct: 122 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 181
Query: 133 -VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHT 190
VNK D + + +E+V+ E+ EL E G E+ PV+ SA+ + +P +
Sbjct: 182 YVNKAD--AVQDSEMVELEIRELLTEFGYKGEET--PVIVGSAL--CALEGRDPELGLKS 235
Query: 191 MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKL 250
+ + D + +IP P + ++P V + +K GD +L
Sbjct: 236 VQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDE---CEL 292
Query: 251 DGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
G +KN R T + G + + ++ A+AGD
Sbjct: 293 LGHSKNIR-TVVTG-IEMFHKSLERAEAGD 320
gi|666130 (M74221) elongation factor Tu [Chlamydia trachomatis]
Length = 394
Score = 87.0 bits (212), Expect = 4e-16
Identities = 80/297 (26%), Positives = 126/297 (41%), Gaps = 14/297 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHG+TTL + + ++D+ E+ RGI I A + E
Sbjct: 14 NIGAIGHVDHGRTTLTAAITRTLSGDGLADFRDYSSIDNTPEEKARGIPINASHVEYETA 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D P HAD+ + +DG +LVV A +G MPQT+ + A + + IVV
Sbjct: 74 NRHYAHVDCPCHADYVKNMITGAAQMDGAILVVSATDGAMPQTKEHILLARQVGVPYIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEHTM 191
+NKID S AE+VD V EL + P++ SA+ + A +
Sbjct: 134 FLNKIDMISEEDAELVDLVEMELAELLEEKGYKGCPIIRGSALKA----LEGDAAYIEKV 189
Query: 192 ANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTLSKLD 251
+ + D+IP P D+P + + +KV D V L L
Sbjct: 190 RELMQAVDDNIPTPEREIDKPFLMPIEDVFSISGRGTVVTGRIERGIVKVSDKVQLVGL- 248
Query: 252 GSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHVEP 304
++ + T L G + R+ Q+ +AG+ + L G D+ G V + V+P
Sbjct: 249 ---RDTKETLLLG-LEMFRKNSQKVRAGENVGLLLRGIGKNDVERGMVVCLPNSVKP 301
gb|AAD32649.1|AF136604_1 (AF136604) EF-Tu [Coxiella burnetii]
Length = 358
Score = 86.6 bits (211), Expect = 5e-16
Identities = 83/302 (27%), Positives = 132/302 (43%), Gaps = 22/302 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL L K ++ A +D+ E+ RGITI + + +
Sbjct: 14 NVGTIGHVDHGKTTLTAALTKVLSEKYGGEKKAFDQIDNAPEERARGITIATSHVEYQSD 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV
Sbjct: 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIVLAKQVGVPNIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS---DNPAD 186
+NK D + E+LEL +E+ D DFP I GS+ + D
Sbjct: 134 YLNKADMVDDK------ELLEL-VEMEVRDLLNSYDFPGDETPIIVGSALKALEGDKSEV 186
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
E ++ + +T+ + P P D+P + + IKVGD +
Sbjct: 187 GEPSIIKLVETMDTYFPQPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGDEIE 246
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVGETVTPSDHV 302
+ + +TK T G + R+ + E +AGD + + + E++ G+ + +
Sbjct: 247 IVGIKDTTK----TTCTG-VEMFRKLLDEGQAGDNVGILLRGTKREEVERGQVLAKPGSI 301
Query: 303 EP 304
P
Sbjct: 302 TP 303
sp|P33165|EFTU_BACFR ELONGATION FACTOR TU (EF-TU) >gi|320453|pir||B60663 translation
elongation factor Tu - Bacteroides fragilis
Length = 394
Score = 86.6 bits (211), Expect = 5e-16
Identities = 85/279 (30%), Positives = 130/279 (46%), Gaps = 22/279 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAE-RAMDS--NALEQ-ERGITILAKNTA 68
N+ I HVDHGKTTL + T+ A+K L+E R+ DS NA E+ ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAIT----TVLAKKGLSELRSFDSIDNAPEEKERGITINTSHVE 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
E +D PGHAD+ + +DG ++VV A +G MPQTR + A + N+
Sbjct: 70 YETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDGPMPQTREHILLARQVNVP 129
Query: 129 PIVV-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
+VV +NK D A E+V+ E+ EL D + + P++ SA+ + +
Sbjct: 130 KLVVFMNKCDMVEDAEMLELVEMEMRELLSFYDFDGD--NTPIIQGSALGALNGVE---- 183
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
E + + + + IP P + D+P V + I VGD +
Sbjct: 184 KWEDKVMELMEAVDTWIPLPPRDVDKPFLMPVEDVFSITGRGTVATGRIETGVIHVGDEI 243
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ L G K VT + F R+ + + +AGD + L
Sbjct: 244 EILGL-GEDKKSVVTGVEMF----RKLLDQGEAGDNVGL 277
sp|P26184|EFTU_FLESI ELONGATION FACTOR TU (EF-TU) >gi|625342|pir||A54536 translation
elongation factor Tu - Flexistipes sinusarabici
>gi|227969|prf||1714240A elongation factor Tu
[Flexistipes sinusarabici]
Length = 396
Score = 86.6 bits (211), Expect = 5e-16
Identities = 85/302 (28%), Positives = 130/302 (42%), Gaps = 22/302 (7%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + + +D E+ERGITI + E +
Sbjct: 14 NVGTIGHVDHGKTTLTAAMTHVLSLKGYADYIEFGNIDKAPEEKERGITIATAHVEYESD 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV
Sbjct: 74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPSIVV 133
Query: 133 -VNKIDKPSARPAEVVDEVLELFIELGADD--EQLDFPVVYASAINGSSSMS-DNPADQE 188
+NK D V DE L +EL D +FP I GS+ + +N D+E
Sbjct: 134 FMNKCDM-------VDDEELLELVELEIRDLLNTYEFPGDDIPIIKGSALQALENAEDEE 186
Query: 189 HTMA--NIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
T + + D+IP P + D+P + + ++V D +
Sbjct: 187 KTKCIWELLQAMDDYIPAPERDIDKPFLMPIEDVFSISGRGTVVTGRVERGKVRVQDEIE 246
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGETVTPSDHV 302
+ L + K VT + F R+ + E +AGD + L G+ +D+ G+ + +
Sbjct: 247 IVGLTDTRKTV-VTGVEMF----RKILDEGEAGDNVGVLLRGIKKDDVERGQVLAKPGSI 301
Query: 303 EP 304
P
Sbjct: 302 TP 303
sp|O59153|EF1A_PYRHO ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) (ELONGATION FACTOR TU)
(EF-TU) >gi|3257908|dbj|BAA30591| (AP000006) 428aa long
hypothetical elongation factor 1-alpha [Pyrococcus
horikoshii]
Length = 428
Score = 86.2 bits (210), Expect = 7e-16
Identities = 91/348 (26%), Positives = 142/348 (40%), Gaps = 54/348 (15%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDAR-----KELAERA--------MDSNALEQERG 59
N+ I HVDHGK+T + LL + + +E+ E+ MD E+ERG
Sbjct: 9 NIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERG 68
Query: 60 ITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
ITI +T E I I+D PGH DF + D VLVV A +G MPQT+
Sbjct: 69 ITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHA 128
Query: 120 KKALEQNLTPIVV-VNKIDKPSARPAEVVDEVLELFIELGADDEQL-------DFPVVYA 171
A + I+V +NK+D +V+ ++F ++ A E+L DFPV+
Sbjct: 129 FLARTLGIKHIIVTINKMD--------MVNYDQKVFEKVKAQVEKLLKTLGYKDFPVIPT 180
Query: 172 SAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXX 231
SA NG + + + + + + +D IP P D+PL+ + +
Sbjct: 181 SAWNGDNVVKKSDKMPWYNGPTLIEA-LDQIPEPEKPIDKPLRIPIQDVYSIKGVGTVPV 239
Query: 232 XXXXXXTIKVGDSVTL--------SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA 283
+KVGD V + G K+ + + +QEA GD I
Sbjct: 240 GRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIE---------MHHEPLQEALPGDNIG 290
Query: 284 LS----GMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFA 327
+ DI G+ + H + P + + T + + N P A
Sbjct: 291 FNVRGVSKNDIKRGDV---AGHTDKPPTVVRTKDTFKAQIIVLNHPTA 335
sp|P42482|EFTU_WOLSU ELONGATION FACTOR TU (EF-TU) >gi|587590|emb|CAA54199| (X76872)
elongation factor Tu [Wolinella succinogenes]
Length = 400
Score = 86.2 bits (210), Expect = 7e-16
Identities = 79/277 (28%), Positives = 124/277 (44%), Gaps = 12/277 (4%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + T + A+D+ E+ERGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLSAAISAVLATKGLCELKDYDAIDNAPEERERGITIATSHIEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + + + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSD--NPADQ 187
+NK D A E+V+ EV EL + D P+V SA+ +D N +
Sbjct: 134 FLNKEDMVDDAELLELVEMEVRELLSNYDFPGD--DTPIVAGSALKALEEANDQENVGEW 191
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
+ + + +IP P + D+P V + +KVGD V +
Sbjct: 192 GEKVLKLMAEVDRYIPTPERDVDKPFLMPVEDVFSIAGRGTVVTGRIERGVVKVGDEVEI 251
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ +N + T + G + R+E+ + +AGD + +
Sbjct: 252 VGI----RNTQKTTVTG-VEMFRKELDKGEAGDNVGV 283
sp|O69303|EFTU_CAMJE ELONGATION FACTOR TU (EF-TU) >gi|3114761|emb|CAA76676| (Y17167)
EF-Tu protein [Campylobacter jejuni]
>gi|6967941|emb|CAB75108.1| (AL139075) elongation factor
TU [Campylobacter jejuni]
Length = 399
Score = 85.8 bits (209), Expect = 9e-16
Identities = 86/332 (25%), Positives = 151/332 (44%), Gaps = 30/332 (9%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA----MDSNALEQERGITILAKNTA 68
N+ I HVDHGKTTL + + +R+ LAE +D+ E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAI----SAVLSRRGLAELKDYDNIDNAPEEKERGITIATSHIE 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
E + +D PGHAD+ + +DG +LVV A +G MPQTR + + + +
Sbjct: 70 YETDNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVP 129
Query: 129 PIVV-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAING-SSSMSDNP 184
IVV +NK D A E+V+ E+ EL + D P++ SA+ + +
Sbjct: 130 YIVVFMNKADMVDDAELLELVEMEIRELLSSYDFPGD--DTPIISGSALKALEEAKAGQD 187
Query: 185 ADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDS 244
+ + ++ + +IP P ++++ + + +KVGD+
Sbjct: 188 GEWSAKIMDLMAAVDSYIPTPTRDTEKDFLMPIEDVFSISGRGTVVTGRIEKGVVKVGDT 247
Query: 245 VTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD----LIALSGMEDIFVG------E 294
+ + + K+ + T + G + R+E+ + +AGD L+ + E++ G +
Sbjct: 248 IEIVGI----KDTQTTTVTG-VEMFRKEMDQGEAGDNVGVLLRGTKKEEVIRGMVLAKPK 302
Query: 295 TVTP-SDHVEPLPILHIDEPTLQMTFLANNSP 325
++TP +D + IL+ DE F N P
Sbjct: 303 SITPHTDFEAEVYILNKDEGGRHTPFFNNYRP 334
sp|P49411|EFTU_HUMAN ELONGATION FACTOR TU, MITOCHONDRIAL PRECURSOR (P43)
>gi|899285|emb|CAA59169| (X84694) mitochondrial
elongation factor Tu [Homo sapiens]
Length = 452
Score = 85.8 bits (209), Expect = 9e-16
Identities = 81/273 (29%), Positives = 123/273 (44%), Gaps = 16/273 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +D+ E+ RGITI A +
Sbjct: 59 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 118
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
D PGHAD+ + +DG +LVV A +G MPQTR L A + + +VV
Sbjct: 119 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 178
Query: 133 -VNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
VNK D + + +E+V+ E+ EL E G E+ PV+ SA+ + +P
Sbjct: 179 YVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PVIVGSAL--CALEGRDPELG 232
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
++ + D + +IP P + ++P V + +K GD
Sbjct: 233 LKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDE--- 289
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
+L G +KN R T + G + + ++ A+AGD
Sbjct: 290 CELLGHSKNIR-TVVTG-IEMFHKSLERAEAGD 320
ref|NP_003312.1|| Tu translation elongation factor, mitochondrial
>gi|2136315|pir||S62767 translation elongation factor Tu
precursor - human >gi|704416 (L38995) elongation factor
Tu [Homo sapiens]
Length = 452
Score = 85.8 bits (209), Expect = 9e-16
Identities = 81/273 (29%), Positives = 123/273 (44%), Gaps = 16/273 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +D+ E+ RGITI A +
Sbjct: 59 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 118
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
D PGHAD+ + +DG +LVV A +G MPQTR L A + + +VV
Sbjct: 119 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 178
Query: 133 -VNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
VNK D + + +E+V+ E+ EL E G E+ PV+ SA+ + +P
Sbjct: 179 YVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PVIVGSAL--CALEGRDPELG 232
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
++ + D + +IP P + ++P V + +K GD
Sbjct: 233 LKSVQKLLDAVDTYIPVPARDLEKPFLLPVEAVYSVPGRGTVVTGTLERGILKKGDE--- 289
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
+L G +KN R T + G + + ++ A+AGD
Sbjct: 290 CELLGHSKNIR-TVVTG-IEMFHKSLERAEAGD 320
emb|CAB49596.1| (AJ248285) translation elongation factor EF-1, subunit alpha (tuf)
[Pyrococcus abyssi]
Length = 428
Score = 85.4 bits (208), Expect = 1e-15
Identities = 91/348 (26%), Positives = 142/348 (40%), Gaps = 54/348 (15%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDAR-----KELAERA--------MDSNALEQERG 59
N+ I HVDHGK+T + LL + + +E+ E+ MD E+ERG
Sbjct: 9 NIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFEEMGEKGKSFKFAWVMDRLKEERERG 68
Query: 60 ITILAKNTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVL 119
ITI +T E I I+D PGH DF + D VLVV A +G MPQT+
Sbjct: 69 ITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHA 128
Query: 120 KKALEQNLTPIVV-VNKIDKPSARPAEVVDEVLELFIELGADDEQL-------DFPVVYA 171
A + I+V +NK+D +V+ ++F ++ A E+L DFPV+
Sbjct: 129 FLARTLGIKHIIVTINKMD--------MVNYDQKVFEKVKAQVEKLLRTLGYKDFPVIPT 180
Query: 172 SAINGSSSMSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXX 231
SA NG + + + + + + +D IP P D+PL+ + +
Sbjct: 181 SAWNGDNIVKKSDKMPWYNGPTLIEA-LDQIPEPEKPVDKPLRIPIQDVYSIKGVGTVPV 239
Query: 232 XXXXXXTIKVGDSVTL--------SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA 283
+KVGD V + G K+ + + +QEA GD I
Sbjct: 240 GRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIE---------MHHEPLQEALPGDNIG 290
Query: 284 LS----GMEDIFVGETVTPSDHVEPLPILHIDEPTLQMTFLANNSPFA 327
+ DI G+ + H + P + + T + + N P A
Sbjct: 291 FNVRGVSKNDIKRGDV---AGHPDKPPTVVRTKDTFKAQIIVLNHPTA 335
pir||S62701 translation elongation factor Tu precursor - Arabidopsis thaliana
>gi|1149571|emb|CAA61511| (X89227) mitochondrial
elongation factor Tu [Arabidopsis thaliana]
Length = 471
Score = 85.4 bits (208), Expect = 1e-15
Identities = 80/287 (27%), Positives = 123/287 (41%), Gaps = 33/287 (11%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +A +D E++RGITI + E
Sbjct: 86 NVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETA 145
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV- 131
+D PGHAD+ + +DG +LVV +G MPQT+ + A + + +V
Sbjct: 146 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMPQTKEHILLARQVGVPSLVC 205
Query: 132 VVNKIDKPSARPAEVVD--EVLEL----------FIELGADDEQLDFPVVYASAINGSSS 179
+NK+D VVD E+LEL F + D D P++ SA++
Sbjct: 206 FLNKVD--------VVDDPELLELVEMELRELLSFYKFPGD----DIPIIRGSALSALQG 253
Query: 180 MSDNPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+D Q + + D + ++IP PV D+P + + I
Sbjct: 254 TNDEIGRQ--AILKLMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVI 311
Query: 240 KVGDSVTLSKL--DGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
KVG+ V + L G + VT + F ++ + +AGD + L
Sbjct: 312 KVGEEVEILGLREGGCSTKSTVTGVEMF----KKILDNGQAGDNVGL 354
sp|P42480|EFTU_TAXOC ELONGATION FACTOR TU (EF-TU) >gi|587581|emb|CAA54325| (X77036)
elongation factor Tu [Taxeobacter ocellatus]
Length = 395
Score = 85.4 bits (208), Expect = 1e-15
Identities = 86/282 (30%), Positives = 131/282 (45%), Gaps = 27/282 (9%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER----AMDSNALEQERGITILAKNTA 68
N+ I HVDHGKTTL + T+ A K LA + ++D+ E+ERGITI NTA
Sbjct: 14 NIGTIGHVDHGKTTLTAAIT----TVLANKGLAAKRDFSSIDNAPEEKERGITI---NTA 66
Query: 69 -VEYNGTRINI--LDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
VEY+ + +D PGHAD+ + +DG +LVV A +G MPQTR + A +
Sbjct: 67 HVEYSTANRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMPQTREHILLARQV 126
Query: 126 NLTPIVV-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
+ +VV +NK+D E+V+ E+ EL D + + PVV SA+ G +
Sbjct: 127 GVPQLVVFMNKVDMVDDPELLELVEMEIRELLSFYDFDGDNI--PVVQGSALGG----LN 180
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
A T+ + D++ + IP P +D+P V + I G
Sbjct: 181 GDAKWVGTIEQLMDSVDNWIPIPPRLTDQPFLMPVEDVFSITGRGTVATGRIERGVINSG 240
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ V + + VT + F R+ + +AGD + L
Sbjct: 241 EPVEILGMGAENLKSTVTGVEMF----RKILDRGEAGDNVGL 278
sp|P13552|EFTU_SPIPL ELONGATION FACTOR TU (EF-TU) >gi|79739|pir||S04391 translation
elongation factor Tu - Spirulina platensis
>gi|47451|emb|CAA33673| (X15646) translation elongation
factor EF-Tu (AA 1-410) [Spirulina platensis]
Length = 410
Score = 85.4 bits (208), Expect = 1e-15
Identities = 83/288 (28%), Positives = 126/288 (42%), Gaps = 29/288 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K +D+ E++RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITMTLAASGGAKARKYDDIDAAPEEKQRGITINTAHVEYETE 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV
Sbjct: 74 QRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPSIVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA---- 185
+NK D E+V+ EV EL + D P+V SA+ +++NP
Sbjct: 134 FLNKADMVDDEELLELVELEVRELLSSYDFPGD--DIPIVSGSALKALDFLTENPKTTRG 191
Query: 186 --DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLD--YNDYXXXXXXXXXXXX---- 237
D + + D + +IP P + D+ LLD + D
Sbjct: 192 ENDWVDKIHALMDEVDAYIPTPERDIDK------GLLDGLWEDVFSITGRGTVSTAGIER 245
Query: 238 -TIKVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+KVGD+V L + K+ R T + G + ++ ++E AGD + L
Sbjct: 246 GKVKVGDTVELIGI----KDTRTTTVTG-AEMFQKTLEEGMAGDNVGL 288
sp|P42439|EFTU_CORGL ELONGATION FACTOR TU (EF-TU) >gi|560819|emb|CAA54323| (X77034)
elongation factor Tu [Corynebacterium glutamicum]
Length = 396
Score = 85.4 bits (208), Expect = 1e-15
Identities = 92/333 (27%), Positives = 141/333 (41%), Gaps = 35/333 (10%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAER----AMDSNALEQERGITILAKNTA 68
N+ I HVDHGKTT + K D EL E ++D E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTTTAAITKV--LADTYPELNEAFAFDSIDKAPEEKERGITINISHVE 71
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
+ +D PGHAD+ + +DG +LVV A +G MPQTR + A + +
Sbjct: 72 YQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHVLLARQVGVP 131
Query: 129 PIVV-VNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDN 183
I+V +NK D E+++ EV EL E D+E P+V+ SA+ +
Sbjct: 132 YILVALNKCD--MVEDEEIIELVEMEVRELLAEQDYDEEA---PIVHISALKA----LEG 182
Query: 184 PADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + D+IP PV +D+P + + T+ V D
Sbjct: 183 DEKWGKQILELMQACDDNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTLNVND 242
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL--IALSGM--EDIFVGETV--- 296
V + + + + VT + F R+ + A+AGD + L G+ ED+ G+ +
Sbjct: 243 DVDIIGIKEKSTSTTVTGIEMF----RKLLDSAEAGDNCGLLLRGIKREDVERGQVIVKP 298
Query: 297 ---TPSDHVE-PLPILHIDEPTLQMTFLANNSP 325
TP E + +L DE F N P
Sbjct: 299 GAYTPHTEFEGSVYVLSKDEGGRHTPFFDNYRP 331
gi|2688415 (AE001152) translation elongation factor TU (tuf) [Borrelia
burgdorferi]
Length = 401
Score = 85.0 bits (207), Expect = 2e-15
Identities = 80/277 (28%), Positives = 124/277 (43%), Gaps = 17/277 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDA-RKELAERAMDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL + L+ K L +D+ E+ RGITI A++ E
Sbjct: 21 NVGTIGHVDHGKTTLTAAISIYCSKLNKDAKALKYEDIDNAPEEKARGITINARHIEYET 80
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+D PGHAD+ + +D +L+V A G PQT+ L A + I+
Sbjct: 81 ANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGAEPQTKEHLLLAQRMGIKKII 140
Query: 132 V-VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEH 189
V +NK+D E+V+ EVLEL + G D P++ SA S NP D E
Sbjct: 141 VFLNKLDLADPELVELVEVEVLELVEKYGF---SADTPIIKGSAFGAMS----NPEDPES 193
Query: 190 T--MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
T + + +++ ++ P + D+P V + IKVG V +
Sbjct: 194 TKCVKELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEVEI 253
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ K R T + G + ++ +++ +AGD + L
Sbjct: 254 VGI----KETRKTTVTG-VEMFQKILEQGQAGDNVGL 285
sp|P74227|EFTU_SYNY3 ELONGATION FACTOR TU (EF-TU) >gi|1653407|dbj|BAA18321| (D90913)
protein synthesis elongation factor Tu [Synechocystis
sp.]
Length = 399
Score = 85.0 bits (207), Expect = 2e-15
Identities = 85/331 (25%), Positives = 138/331 (41%), Gaps = 25/331 (7%)
Query: 9 EDIRNVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTA 68
+D N+ I HVDHGKTTL + L K +D+ E+ RGITI +
Sbjct: 10 KDHVNIGTIGHVDHGKTTLTAAITMTLAELGGAKARKYEDIDAAPEEKARGITINTAHVE 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
E + +D PGHAD+ + +DG +LVV A +G MPQTR + A + +
Sbjct: 70 YETDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVP 129
Query: 129 PIVVVNKIDKPSARPAEVVDEVLELFIELGADDEQL---DFPVVYASAINGSSSMSDNPA 185
+VV ++K E + E++EL + D D P+V SA+ +
Sbjct: 130 KLVVF--LNKKDMVDDEELLELVELEVRELLSDYDFPGDDIPIVAGSALKA----IEGEK 183
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ + + + + D+I P D+P V + +KVG+ +
Sbjct: 184 EYKDAILELMKAVDDYIDTPEREVDKPFLMAVEDVFSITGRGTVATGRIERGKVKVGEEI 243
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL----SGMEDIFVG------ET 295
++ + T+ VT + F ++ ++E AGD + L EDI G +
Sbjct: 244 SIVGIK-DTRKATVTGVEMF----QKTLEEGMAGDNVGLLLRGIQKEDIERGMVLAKPGS 298
Query: 296 VTPSDHVE-PLPILHIDEPTLQMTFLANNSP 325
+TP E + +L +E F AN P
Sbjct: 299 ITPHTEFEGEVYVLKKEEGGRHTPFFANYRP 329
pir||S57945 probable translation elongation factor EF-Tu - Eimeria tenella
>gi|899262|emb|CAA61615| (X89446) predicted elongation
factor Tu [Eimeria tenella] >gi|3378155|emb|CAA73000.1|
(Y12332) elongation factor Tu [Eimeria tenella]
Length = 403
Score = 85.0 bits (207), Expect = 2e-15
Identities = 96/388 (24%), Positives = 161/388 (40%), Gaps = 25/388 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + ++ K + +DS E+ RGITI + E N
Sbjct: 14 NIGTIGHVDHGKTTLTAAITSYLSKINNTKAKSYSEIDSAPEEKARGITINTSHIEYETN 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR L A + + I+V
Sbjct: 74 LRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLAKQVGVPNIIV 133
Query: 133 -VNKIDKPSARP-AEVVD-EVLEL--FIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
+NKID E+V+ EV EL E D ++ SA+ + N +
Sbjct: 134 FLNKIDMVEDNELLELVELEVRELLDIYEYNGDSTS----IIKGSALKALEYIEKNDLNN 189
Query: 188 E--HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
+ + N+ + + IP P + ++P LL D I+ G
Sbjct: 190 KWVKNLKNLIEALDKSIPEPKRDINKPF-----LLSIEDIFSITGRGTVVTGKIERGKVK 244
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEPL 305
+D N T + ++ + A+AGD + + + I E +PL
Sbjct: 245 LNDTVDILGFNLLKTTTVTGIEMFQKILNTAEAGDNVGIL-LRGIQKNEVRRGMVLAKPL 303
Query: 306 PILHIDEPTLQMTFLANNSPFAGREGKWVTSRKVEERLVSELQTDVSLRVE---NTESPD 362
IL + ++ L+++ GR+ + K + + TDV+ +E N E P+
Sbjct: 304 SILTYSKFDAEVYILSSSE--GGRKKPFFEGYKPQFYFYT---TDVTGTIEFLRNPEKPE 358
Query: 363 KWVVSGRGELHLSILIETMRREGYELQV 390
+ + +L +S++ +G +
Sbjct: 359 MILPGDKVKLRISLMYSIALEKGMRFAI 386
sp|P42476|EFTU_FLAFE ELONGATION FACTOR TU (EF-TU) >gi|560831|emb|CAA54195| (X76867)
elongation factor Tu [Flavobacterium ferrugineum]
Length = 395
Score = 85.0 bits (207), Expect = 2e-15
Identities = 81/274 (29%), Positives = 122/274 (43%), Gaps = 19/274 (6%)
Query: 13 NVAVIAHVDHGKTTL---VDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAV 69
N+ I HVDHGKTTL + ++L + A+K +D E+ERGITI +
Sbjct: 14 NIGTIGHVDHGKTTLTAAITDILSKKGLAQAKKY---DEIDGAPEEKERGITINTAHVEY 70
Query: 70 EYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTP 129
E +D PGHAD+ + +DG +LVV A +G MPQT+ + A + +
Sbjct: 71 ETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAASDGPMPQTKEHILLAAQVGVPK 130
Query: 130 IVV-VNKID-KPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPAD 186
+VV +NK+D E+V+ EV E + G D + + P++ SA + +
Sbjct: 131 MVVFLNKVDLVDDEELLELVEIEVREELTKRGFDGD--NTPIIKGSATGALAGEEKWVKE 188
Query: 187 QEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVT 246
E N+ D + +IP P D P V + IKVG+ V
Sbjct: 189 IE----NLMDAVDSYIPLPPRPVDLPFLMSVEDVFSITGRGTVATGRIERGRIKVGEPVE 244
Query: 247 LSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGD 280
+ L S N VT + F R+ + E +AGD
Sbjct: 245 IVGLQESPLNSTVTGVEMF----RKLLDEGEAGD 274
sp|P50062|EFTU_BORBU ELONGATION FACTOR TU (EF-TU) >gi|2120498|pir||S62727 translation
elongation factor Tu - Lyme disease spirochete
>gi|349407 (L23125) elongation factor EF-Tu [Borrelia
burgdorferi] >gi|1685369 (U78193) EFTu [Borrelia
burgdorferi]
Length = 394
Score = 85.0 bits (207), Expect = 2e-15
Identities = 80/277 (28%), Positives = 124/277 (43%), Gaps = 17/277 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDA-RKELAERAMDSNALEQERGITILAKNTAVEY 71
NV I HVDHGKTTL + L+ K L +D+ E+ RGITI A++ E
Sbjct: 14 NVGTIGHVDHGKTTLTAAISIYCSKLNKDAKALKYEDIDNAPEEKARGITINARHIEYET 73
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+D PGHAD+ + +D +L+V A G PQT+ L A + I+
Sbjct: 74 ANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGAEPQTKEHLLLAQRMGIKKII 133
Query: 132 V-VNKIDKPSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQEH 189
V +NK+D E+V+ EVLEL + G D P++ SA S NP D E
Sbjct: 134 VFLNKLDLADPELVELVEVEVLELVEKYGF---SADTPIIKGSAFGAMS----NPEDPES 186
Query: 190 T--MANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
T + + +++ ++ P + D+P V + IKVG V +
Sbjct: 187 TKCVKELLESMDNYFDLPERDIDKPFLLAVEDVFSISGRGTVATGRIERGIIKVGQEVEI 246
Query: 248 SKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ K R T + G + ++ +++ +AGD + L
Sbjct: 247 VGI----KETRKTTVTG-VEMFQKILEQGQAGDNVGL 278
emb|CAA09488| (AJ011104) elongation factor TU [Apple proliferation phytoplasma]
Length = 392
Score = 84.7 bits (206), Expect = 2e-15
Identities = 79/282 (28%), Positives = 126/282 (44%), Gaps = 17/282 (6%)
Query: 7 LREDIR-NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAK 65
LR+ + NV I HVDHGKTTL + K T + + +D E+ERGITI
Sbjct: 7 LRDKVHVNVGTIGHVDHGKTTLTAAITKILSTKGLAENKSYDQIDKTKEEKERGITINTT 66
Query: 66 NTAVEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQ 125
+ + E +D PGHAD+ + +D +LVV AY G MPQTR + A +
Sbjct: 67 HVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMPQTREHVLLAGQV 126
Query: 126 NLTPIVV-VNKID--KPSARPAEVVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSD 182
++ ++V +NK D K V EV EL E D ++ F + GS+ +
Sbjct: 127 GISKLIVFLNKCDLVKEEEWIHLVEMEVRELLNEYKFDGDKTPF-------VRGSALKAL 179
Query: 183 NPADQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVG 242
D E + + + + ++I P+ + ++P V + IK+
Sbjct: 180 EGTDVE-GINKLLEVLDEYIEDPIRDVEKPFLMPVEGVHTITGRGTVATGRVERGKIKIS 238
Query: 243 DSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
+ V + L TK +T L F ++E+ A+AGD + +
Sbjct: 239 EEVEIIGLK-ETKKAIITGLEMF----KKELDFAQAGDNVGI 275
sp|P33171|EFTU_SYNP7 ELONGATION FACTOR TU (EF-TU)
Length = 409
Score = 84.7 bits (206), Expect = 2e-15
Identities = 78/281 (27%), Positives = 122/281 (42%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K A +D+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKAGMAKARAYADIDAAPEEKARGITINTAHVEYETG 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNIVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE- 188
+NK D A E+V+ EV EL + D P+V SA+ ++ + Q+
Sbjct: 134 FLNKEDMVDDAELLELVELEVRELLSSYDFPGD--DIPIVAGSALQALEAIQGGASGQKG 191
Query: 189 -----HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + + + +IP P D P V + ++KVG+
Sbjct: 192 DNPWVDKILKLMEEVDAYIPTPEREVDRPFLMAVEDVFTITGRGTVATGRIERGSVKVGE 251
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
++ + L T++ VT + F ++ + E AGD + L
Sbjct: 252 TIEIVGL-RDTRSTTVTGVEMF----QKTLDEGLAGDNVGL 287
sp|P18668|EFTU_ANANI ELONGATION FACTOR TU (EF-TU) >gi|79628|pir||S04430 translation
elongation factor Tu.A - Synechococcus sp
>gi|1405433|emb|CAA35496| (X17442) tufA [Synechococcus
PCC6301]
Length = 409
Score = 84.7 bits (206), Expect = 2e-15
Identities = 78/281 (27%), Positives = 122/281 (42%), Gaps = 16/281 (5%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
N+ I HVDHGKTTL + K A +D+ E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLTAAITTVLAKAGMAKARAYADIDAAPEEKARGITINTAHVEYETG 73
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
+D PGHAD+ + +DG +LVV A +G MPQTR + A + + IVV
Sbjct: 74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLAKQVGVPNIVV 133
Query: 133 -VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQE- 188
+NK D A E+V+ EV EL + D P+V SA+ ++ + Q+
Sbjct: 134 FLNKEDMVDDAELLELVELEVRELLSSYDFPGD--DIPIVAGSALQALEAIQGGASGQKG 191
Query: 189 -----HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGD 243
+ + + + +IP P D P V + ++KVG+
Sbjct: 192 DNPWVDKILKLMEEVDAYIPTPEREVDRPFLMAVEDVFTITGRGTVATGRIERGSVKVGE 251
Query: 244 SVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIAL 284
++ + L T++ VT + F ++ + E AGD + L
Sbjct: 252 TIEIVGL-RDTRSTTVTGVEMF----QKTLDEGLAGDNVGL 287
sp|P49462|EFTU_ODOSI ELONGATION FACTOR TU (EF-TU) >gi|1185138|emb|CAA91621| (Z67753)
elongation factor Tu [Odontella sinensis]
Length = 409
Score = 84.3 bits (205), Expect = 3e-15
Identities = 91/312 (29%), Positives = 142/312 (45%), Gaps = 30/312 (9%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA-MDSNALEQERGITILAKNTAVEY 71
N+ I HVDHGKTTL + + LD ++ + +D E+ RGITI + E
Sbjct: 14 NIGTIGHVDHGKTTLT-AAITATLALDGNAKVKDYPDIDGAPEERARGITINTAHVEYET 72
Query: 72 NGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIV 131
+D PGHAD+ + +DG +LVV A +G MPQTR + + + + IV
Sbjct: 73 ENGHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSKQVGVPDIV 132
Query: 132 V-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQ-LDFPVVYASAINGSSSMSDNPADQ 187
V +NK D+ A E+V+ EV EL L A D Q + F SA+ ++S NPA +
Sbjct: 133 VFLNKEDQVDDAELLELVELEVREL---LSAYDFQVMTFRFAPGSALQAIEAISSNPAIK 189
Query: 188 E------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKV 241
+ + D + ++IP P + ++ + + +KV
Sbjct: 190 RGDNPWVDKIFALMDAVDEYIPTPERDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKV 249
Query: 242 GDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL--IALSGM--EDIFVG---- 293
GD+V + + G T+ +T + F ++ + E AGD I L G+ EDI G
Sbjct: 250 GDTVEIVGV-GDTQTTTITGIEMF----QKTLDEGFAGDNVGILLRGVTREDIEAGMVLS 304
Query: 294 --ETVTPSDHVE 303
T+TP + E
Sbjct: 305 EPGTITPHTNFE 316
sp|P33168|EFTU_DEISP ELONGATION FACTOR TU (EF-TU) >gi|320382|pir||C60663 translation
elongation factor Tu - "Deinonema" sp
Length = 405
Score = 84.3 bits (205), Expect = 3e-15
Identities = 91/309 (29%), Positives = 137/309 (43%), Gaps = 27/309 (8%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKE-LAERAMDSNALEQERGITILAKNTA-VE 70
NV I HVDHGKTTL + + D E LA +D E+ RGITI NTA VE
Sbjct: 14 NVGTIGHVDHGKTTLTAAITFTAAASDPTIEKLAYDQIDKAPEEKARGITI---NTAHVE 70
Query: 71 YNGT--RINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
YN + +D PGHAD+ + +DG +LVV + +G MPQTR + A + +
Sbjct: 71 YNTPTRHYSHVDCPGHADYVKNMITGAAQMDGAILVVSSADGPMPQTREHILLARQVGVP 130
Query: 129 PIVV-VNKIDK-PSARPAEVVD-EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
IVV +NK+D E+V+ EV EL + + D PV+ SA+ ++ NP
Sbjct: 131 YIVVFMNKVDMVDDEELLELVEMEVRELLSKYEFPGD--DLPVIKGSALQALEALQANPK 188
Query: 186 DQE------HTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTI 239
+ + D + +IP P +D+ V + +
Sbjct: 189 TARGEDKWVDRIWELLDAVDSYIPTPERATDKTFLMPVEDVFTITGRGTVATGRVERGVV 248
Query: 240 KVGDSVTLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDLIA--LSGM--EDIFVGET 295
KV D V + L TK VT + + R+ + AGD + L G+ +D+ G+
Sbjct: 249 KVQDEVEIIGL-RDTKKTTVTGI----EMHRKLLDSGMAGDNVGVLLRGVARDDVERGQV 303
Query: 296 VTPSDHVEP 304
+ ++P
Sbjct: 304 LAKPGSIKP 312
sp|P50068|EFTU_UREUR ELONGATION FACTOR TU (EF-TU) >gi|2127672|pir||S62726 translation
elongation factor Tu - Ureaplasma urealyticum (SGC3)
>gi|498791|emb|CAA84029| (Z34275) elongation factor Tu
[Ureaplasma urealyticum]
>gi|6899525|gb|AAF30935.1|AE002151_1 (AE002151)
translation elongation factor tu (EF-tu) [Ureaplasma
urealyticum]
Length = 394
Score = 84.3 bits (205), Expect = 3e-15
Identities = 87/303 (28%), Positives = 137/303 (44%), Gaps = 26/303 (8%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERA----MDSNALEQERGITILAKNTA 68
N+ I HVDHGKTTL + T+ A+K A +D E+ERGITI A +
Sbjct: 14 NIGTIGHVDHGKTTLTAAI----STVLAKKGQAIAQSYADVDKTPEERERGITINASHVE 69
Query: 69 VEYNGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLT 128
E +D PGHAD+ + +DG +LV+ A +G M QT+ + A + +
Sbjct: 70 YETKTRHYAHVDCPGHADYVKNMITGAAQMDGAILVIAASDGVMAQTKEHILLARQVGVP 129
Query: 129 PIVV-VNKIDKPSARPAE--VVDEVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPA 185
IVV +NK D + + V EV EL + G D + + PV+ S G ++ +P
Sbjct: 130 KIVVFLNKCDFMTDPDMQDLVEMEVRELLSKYGFDGD--NTPVIRGS---GLKALEGDPV 184
Query: 186 DQEHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSV 245
E + + D + IP P ++D+P + + +KV D V
Sbjct: 185 -WEAKIDELMDAVDSWIPLPERSTDKPFLLAIEDVFTISGRGTVVTGRVERGVLKVNDEV 243
Query: 246 TLSKLDGSTKNFRVTKLFGFFGLDRQEIQEAKAGDL--IALSGM--EDIFVGETVTPSDH 301
+ L + K VT + F R+ + +A+AGD I L G+ ED+ G+ +
Sbjct: 244 EIVGLKDTQKTV-VTGIEMF----RKSLDQAEAGDNAGILLRGIKKEDVERGQVLVKPGS 298
Query: 302 VEP 304
++P
Sbjct: 299 IKP 301
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp >gi|6137415|pdb|1D2E|B Chain B, Crystal Structure Of
Mitochondrial Ef-Tu In Complex With Gdp
>gi|6137416|pdb|1D2E|C Chain C, Crystal Structure Of
Mitochondrial Ef-Tu In Complex With Gdp
>gi|6137417|pdb|1D2E|D Chain D, Crystal Structure Of
Mitochondrial Ef-Tu In Complex With Gdp
Length = 397
Score = 83.9 bits (204), Expect = 4e-15
Identities = 86/300 (28%), Positives = 130/300 (42%), Gaps = 18/300 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +D+ E+ RGITI A +
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 64
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
D PGHAD+ + +DG +LVV A +G MPQTR L A + + +VV
Sbjct: 65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 124
Query: 133 -VNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
VNK D + + +E+V+ E+ EL E G E+ P++ SA+ + +P
Sbjct: 125 YVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSAL--CALEQRDPELG 178
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
++ + D + +IP P + ++P V + +K GD
Sbjct: 179 LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE--- 235
Query: 248 SKLDGSTKNFR--VTKLFGFF-GLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP 304
+ G +KN R VT + F LDR E + G L+ ED+ G + ++P
Sbjct: 236 CEFLGHSKNIRTVVTGIEMFHKSLDRAEAGD-NLGALVRGLKREDLRRGLVMAKPGSIQP 294
pir||S62768 translation elongation factor Tu precursor - bovine
Length = 452
Score = 83.9 bits (204), Expect = 4e-15
Identities = 86/300 (28%), Positives = 130/300 (42%), Gaps = 18/300 (6%)
Query: 13 NVAVIAHVDHGKTTLVDELLKQSQTLDARKELAERAMDSNALEQERGITILAKNTAVEYN 72
NV I HVDHGKTTL + K K +D+ E+ RGITI A +
Sbjct: 59 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTA 118
Query: 73 GTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKALEQNLTPIVV 132
D PGHAD+ + +DG +LVV A +G MPQTR L A + + +VV
Sbjct: 119 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVV 178
Query: 133 -VNKIDKPSARPAEVVD----EVLELFIELGADDEQLDFPVVYASAINGSSSMSDNPADQ 187
VNK D + + +E+V+ E+ EL E G E+ P++ SA+ + +P
Sbjct: 179 YVNKAD--AVQDSEMVELVELEIRELLTEFGYKGEET--PIIVGSAL--CALEQRDPELG 232
Query: 188 EHTMANIFDTIIDHIPGPVDNSDEPLQFQVSLLDYNDYXXXXXXXXXXXXTIKVGDSVTL 247
++ + D + +IP P + ++P V + +K GD
Sbjct: 233 LKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDE--- 289
Query: 248 SKLDGSTKNFR--VTKLFGFF-GLDRQEIQEAKAGDLIALSGMEDIFVGETVTPSDHVEP 304
+ G +KN R VT + F LDR E + G L+ ED+ G + ++P
Sbjct: 290 CEFLGHSKNIRTVVTGIEMFHKSLDRAEAGD-NLGALVRGLKREDLRRGLVMAKPGSIQP 348
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.315 0.135 0.372
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159002824
Number of Sequences: 457798
Number of extensions: 6639504
Number of successful extensions: 20970
Number of sequences better than 1.0e-02: 910
Number of HSP's better than 0.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 414
Number of HSP's that attempted gapping in prelim test: 19040
Number of HSP's gapped (non-prelim): 1242
length of query: 613
length of database: 140,871,481
effective HSP length: 61
effective length of query: 552
effective length of database: 112,945,803
effective search space: 62346083256
effective search space used: 62346083256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 98 (42.6 bits)