Score E
Sequences producing significant alignments: (bits) Value
gi|3452384 (AF082865) putative transposase [Streptococcus p... 282 2e-75
gi|517210 (U11799) putative transposase [Streptococcus pyog... 282 3e-75
emb|CAA50689| (X71844) putative transposase [Clostridium pe... 159 4e-38
emb|CAA50692| (X71844) putative transposase [Clostridium pe... 158 5e-38
pir||S37438 transposase - Streptococcus salivarius >gi|4070... 155 4e-37
sp|P37245|TRA1_STRSL PROBABLE TRANSPOSASE FOR INSERTION-LIK... 150 1e-35
pir||JC4048 hypothetical protein (insertion sequence IS1070... 127 1e-28
emb|CAA05973| (AJ003194) transposase [Lactobacillus casei] 111 6e-24
pir||S46409 hypothetical protein - Aeromonas salmonicida >g... 109 3e-23
emb|CAB72041.1| (AJ391262) putative transposase [Neisseria ... 99 3e-20
dbj|BAA77753.1| (AB017185) transposase-like protein [Erysip... 98 8e-20
sp|P37247|TRA4_BACFR TRANSPOSASE FOR INSERTION SEQUENCE ELE... 98 1e-19
gb|AAD25737.1|AF100324_5 (AF100324) IS1630 transposase [Myc... 92 4e-18
gi|3328372 (AF075600) transposase [Brochothrix campestris] 92 6e-18
gi|309273 (L17305) granuloma associated factor [Mus musculus] 89 5e-17
pir||S44255 insertion element - Pediococcus pentosaceus >gi... 88 9e-17
gb|AAB01723.1| (U37284) putative transposase [Pseudomonas a... 84 1e-15
pir||S28740 probable transposase (insertion sequence IS30) ... 84 2e-15
sp|P37246|TRA8_ECOLI TRANSPOSASE FOR INSERTION SEQUENCE ELE... 84 2e-15
gi|1552823 (U70214) IS30 transposase [Escherichia coli] >gi... 83 2e-15
dbj|BAA84890.1| (AB024946) Transposase [Escherichia coli] 81 1e-14
emb|CAA16656| (AL021646) hypothetical protein Rv3191c [Myco... 80 2e-14
gi|2981017 (AF043676) putative transposase [Acinetobacter s... 79 4e-14
sp|P37248|TRA8_ALCEU TRANSPOSASE FOR INSERTION SEQUENCE ELE... 78 1e-13
emb|CAA06660.1| (AJ005663) putative transposase [Pseudomona... 76 4e-13
emb|CAA65663| (X96976) transposase [Enterococcus faecalis] 75 8e-13
gi|2995638 (AF052750) transposase [Pseudomonas putida] 72 6e-12
gi|2555142 (AF024666) transposase 1513 [Corynebacterium str... 72 6e-12
gi|2257708 (U73041) transposase-like protein [Thiobacillus ... 67 2e-10
gi|3582196 (AE001272) IS6770 transposase [Lactococcus lactis] 66 5e-10
gi|453537 (L28754) transposase [Insertion sequence IS6770] 66 5e-10
gi|1143013 (U28972) SpV1 ORF3; putative transposase [Spirop... 65 7e-10
sp|P15894|VG3_SPV1R GENE 3 PROTEIN >gi|77022|pir||S08451 hy... 63 3e-09
emb|CAB62563.1| (AJ010061) unnamed protein product [Ralston... 62 8e-09
gi|624697 (L38972) transposase [Plasmid pHKK701] 55 6e-07
sp|P29472|YLA3_LACAC HYPOTHETICAL 14.4 KD PROTEIN IN LAF 3'... 46 4e-04
gi|3241975 (U85710) transposase [Sulfolobus solfataricus] 43 0.003
gi|3452384 (AF082865) putative transposase [Streptococcus pyogenes]
Length = 338
Score = 282 bits (715), Expect = 2e-75
Identities = 161/317 (50%), Positives = 204/317 (63%), Gaps = 10/317 (3%)
Query: 1 MQDYSITSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEI-QL 59
MQDY KGK LT +R I+RW EG SNREIARLL KA TI E+KRG + Q
Sbjct: 1 MQDYYTP---KGKQLTIHERRQIQRW-KLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQ 56
Query: 60 KRKVK----YSAKKAQENYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQALKG 115
RK K YSA+ AQ Y+ R SVRP + + + ++++ ++
Sbjct: 57 VRKGKFEAAYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMIVKAKGVQ 116
Query: 116 VSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEVG 175
V +S++Y W++ G L + + YP+ GKSIE+RP+ IN RLE G
Sbjct: 117 VPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAG 176
Query: 176 HYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDFKSITPD 235
HYEIDTVILTRAKN+ LLTLT+RK R ++IRLI K+AQAVN L + K Y SIT D
Sbjct: 177 HYEIDTVILTRAKNQCLLTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITAD 236
Query: 236 NGHEFARLSEVV-SCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKTTPEEVAAIEYW 294
NG EF+RLS+V + +YYAH YAS+ERGTNENHNR+IRR LPKGT TTP+EVAAIE+W
Sbjct: 237 NGTEFSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHW 296
Query: 295 MNHYPRKMFNYKSSYEM 311
+NHYP+++FNYKS EM
Sbjct: 297 INHYPKRLFNYKSLVEM 313
gi|517210 (U11799) putative transposase [Streptococcus pyogenes]
Length = 326
Score = 282 bits (714), Expect = 3e-75
Identities = 161/317 (50%), Positives = 204/317 (63%), Gaps = 10/317 (3%)
Query: 1 MQDYSITSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEI-QL 59
MQDY KGK LT +R I+RW EG SNREIARLL KA TI E+KRG + Q
Sbjct: 1 MQDYYTP---KGKQLTIHERRQIQRW-KLEGRSNREIARLLGKAPQTIHNEIKRGLVRQQ 56
Query: 60 KRKVK----YSAKKAQENYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQALKG 115
RK K YSA+ AQ Y+ R SVRP + + + ++++ ++
Sbjct: 57 VRKGKFEAVYSAQHAQLVYQENRKRSVRPIRQRKQDREAIEHYMRQNYSPEMMVKAKGVQ 116
Query: 116 VSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEVG 175
V +S++Y W++ G L + + YP+ GKSIE+RP+ IN RLE G
Sbjct: 117 VPVSTIYYWIHHGKLSLGKEAMLYPRKAKQARKHASPYFKPAGKSIEQRPDSINQRLEAG 176
Query: 176 HYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDFKSITPD 235
HYEIDTVILTRAKN+ LLTLT+RK R ++IRLI K+AQAVN L + K Y SIT D
Sbjct: 177 HYEIDTVILTRAKNQCLLTLTDRKTRHQLIRLIPDKSAQAVNKALTGILKDYTVNSITAD 236
Query: 236 NGHEFARLSEVV-SCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKTTPEEVAAIEYW 294
NG EF+RLS+V + +YYAH YAS+ERGTNENHNR+IRR LPKGT TTP+EVAAIE+W
Sbjct: 237 NGTEFSRLSDVFPASDIYYAHPYASWERGTNENHNRLIRRCLPKGTKTTTPKEVAAIEHW 296
Query: 295 MNHYPRKMFNYKSSYEM 311
+NHYP+++FNYKS EM
Sbjct: 297 INHYPKRLFNYKSPVEM 313
emb|CAA50689| (X71844) putative transposase [Clostridium perfringens]
Length = 350
Score = 159 bits (397), Expect = 4e-38
Identities = 119/332 (35%), Positives = 171/332 (50%), Gaps = 28/332 (8%)
Query: 7 TSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVK-- 64
T K KHL ++R+ +E K+G S + + LN+ T+ E++RG + ++ K
Sbjct: 8 TESRKNKHLNMKERMIVEI-RLKDGFSAYKNTKELNRPINTVLNEIRRGTTKQIKQGKEF 66
Query: 65 --YSAKKAQENYEGLRAHSVRPSKLTTEIDC--YVSTRLKEDKDSLEV-IHQALKG---- 115
Y A + Y+ R S R KL D YV ++K D SL+ + +AL
Sbjct: 67 HVYFADTGEAVYKKNRLKSNRKYKLLECSDFIKYVVDKVKNDHWSLDACVGEALHSSRFS 126
Query: 116 ----VSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNR 171
+S +LYN+V+ G L K L + G SI +RP I NR
Sbjct: 127 PSQIISTKTLYNYVDLGLLPIKNIDLPAKLHRNKKSTRVRNNKKKLGTSISDRPNSIENR 186
Query: 172 LEVGHYEIDTVILTRA-KNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQK----- 225
E GH+EID V+ ++ K+KVLLTL ERK R II + + +V L ++++
Sbjct: 187 EEFGHWEIDCVLGEKSNKDKVLLTLVERKTRYAIISEMSSHSTISVTKALDKIKEFLGSK 246
Query: 226 -SYDFKSITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKG-- 279
S FKSIT DNG EFA LSE VY+ H Y+SFE+GTNE HN +IRR +PKG
Sbjct: 247 FSEVFKSITADNGSEFADLSEFELKTKTKVYFTHPYSSFEKGTNERHNGLIRRFIPKGKR 306
Query: 280 TTKTTPEEVAAIEYWMNHYPRKMFNYKSSYEM 311
+ + E ++ IE WMN PRK+ +YK+ E+
Sbjct: 307 ISDYSLETISFIENWMNTLPRKLLDYKTPEEL 338
emb|CAA50692| (X71844) putative transposase [Clostridium perfringens]
Length = 350
Score = 158 bits (396), Expect = 5e-38
Identities = 118/332 (35%), Positives = 170/332 (50%), Gaps = 28/332 (8%)
Query: 7 TSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVK-- 64
T K KHL +DR+ +E K+G S +IA+ LN+ T+ E++ G + ++ K
Sbjct: 8 TESRKNKHLNMKDRMIVEI-RLKDGFSAYKIAKELNRPINTVLNEIRPGTTKQIKQGKEF 66
Query: 65 --YSAKKAQENYEGLRAHSVRPSKLTTEIDC--YVSTRLKEDKDSLEV-IHQALKG---- 115
Y A + Y R S R +KL D YV ++K D SL+ + +AL
Sbjct: 67 HVYFADTGEAVYNKNRLKSNRNTKLLECSDFIKYVVDKVKNDHWSLDACVGEALHSSRFS 126
Query: 116 ----VSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNR 171
+S +LYN+V+ G L K L + G SI +RP I NR
Sbjct: 127 PSQIISTKTLYNYVDLGLLPIKNIDLPAKLHRNKKSTRVRNNKKKLGTSISDRPNSIENR 186
Query: 172 LEVGHYEIDTVILTRA-KNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYD-- 228
E GH+EID V+ ++ K+KVLLTL ERK R II + + +V L ++++ +
Sbjct: 187 EEFGHWEIDCVLGEKSNKDKVLLTLVERKTRYAIISEMSSHSTISVTKALDKIKEFFGSK 246
Query: 229 ----FKSITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGT- 280
FKSIT DNG EFA LSE VY+ H Y+ FE+GTNE HN +I R +PKG
Sbjct: 247 FSEVFKSITADNGSEFADLSEFELKTKTKVYFTHPYSPFEKGTNERHNGLIGRFIPKGNR 306
Query: 281 -TKTTPEEVAAIEYWMNHYPRKMFNYKSSYEM 311
+ + E ++ IE WMN PRK+ +YK+ E+
Sbjct: 307 ISDYSLETISFIENWMNTLPRKLLDYKTPEEL 338
pir||S37438 transposase - Streptococcus salivarius >gi|407066|emb|CAA78948.1|
(Z17279) transposase [Streptococcus salivarius]
Length = 341
Score = 155 bits (388), Expect = 4e-37
Identities = 114/339 (33%), Positives = 166/339 (48%), Gaps = 40/339 (11%)
Query: 3 DYSITSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRK 62
+YS T+QS KHL+ +R IE + + GL EIAR L + TI RE+ RG I +K
Sbjct: 6 NYSTTNQSY-KHLSEAERGEIEAYLSV-GLKPAEIARRLGRNRSTITREINRGSITQVKK 63
Query: 63 VK--------YSAKKAQENYEGLRAHS-------------------VRPSKLTTEIDCYV 95
V Y A A Y R S +R +D +V
Sbjct: 64 VNGQKVYYQHYYADAAHNRYRHAREASYYLKLDSVSDDFLRAFTEAMREKPRVHSVDTFV 123
Query: 96 STRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXX 155
T + D++ S +LYN+++ G LE K L
Sbjct: 124 HTYRLQHVDAVVP--------STKTLYNYIHQGLLEIKVIDLPRAVRIRKKFTKRPSTKK 175
Query: 156 XFGKSIEERPEFINNRLEVGHYEIDTVILTRAKNKV-LLTLTERKYRTEIIRLIDGKTAQ 214
GKSIEERPE INNR G +EID+V+ + + +LTL ER+ R + + + K A+
Sbjct: 176 HLGKSIEERPEEINNRSRFGDWEIDSVLGGKTIGEPSILTLVERQTRYAVTKKLVEKKAE 235
Query: 215 AVNDELVELQKSYDFKSITPDNGHEFARLSEVVSCPVYYAHAYASFERGTNENHNRMIRR 274
VN ++E K Y KSIT DNG+EF+ LS++ VY+AHAY+S+ERGTNEN N ++R
Sbjct: 236 YVNQAVLECMKLYPIKSITADNGNEFSSLSKIEGLDVYFAHAYSSYERGTNENFNGLLRE 295
Query: 275 HLPKGTTKTTPEEVAAIEYW--MNHYPRKMFNYKSSYEM 311
+PKG + + +Y +N PR++ Y+S+ ++
Sbjct: 296 FIPKGCSLKELNQNLLEDYTKAINERPRRIHGYQSAKKL 334
sp|P37245|TRA1_STRSL PROBABLE TRANSPOSASE FOR INSERTION-LIKE SEQUENCE ELEMENT IS1161
>gi|348005 (L07794) transposase [Streptococcus
salivarius]
Length = 342
Score = 150 bits (376), Expect = 1e-35
Identities = 112/340 (32%), Positives = 168/340 (48%), Gaps = 41/340 (12%)
Query: 3 DYSITSQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRK 62
+YS T+QS KHL+ +R IE + + GL EIAR L + TI RE+ RG I +K
Sbjct: 6 NYSTTNQSY-KHLSEAERGEIEAYLSV-GLKPAEIARRLGRNRSTITREINRGSITQVKK 63
Query: 63 VK--------------------------YSAKKAQENYEGLRAHS--VRPSKLTTEIDCY 94
V Y K + + +RA + +R +D +
Sbjct: 64 VNGAKGLLPTLLCRCCSITVIRHAREASYYLKLDSVSDDFMRAFTDAMREKPRVHSVDTF 123
Query: 95 VSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXX 154
V T + D++ S +LYN+++ G LE K L
Sbjct: 124 VHTYRLQHVDAVVP--------STKTLYNYIHQGLLEIKVIDLPRRVRIRKKFTKRPSTK 175
Query: 155 XXFGKSIEERPEFINNRLEVGHYEIDTVILTRAKNKV-LLTLTERKYRTEIIRLIDGKTA 213
GKSIEERPE INNR G +EID+V+ + + +LTL ER+ R + + + K A
Sbjct: 176 KHLGKSIEERPEEINNRSRFGDWEIDSVLGGKTIGEPSILTLVERQTRYAVTKKLVEKKA 235
Query: 214 QAVNDELVELQKSYDFKSITPDNGHEFARLSEVVSCPVYYAHAYASFERGTNENHNRMIR 273
+ VN ++E K Y KSIT DNG+EF+ LS++ VY+AHAY+S+ERGTNEN N ++R
Sbjct: 236 EYVNQAVLECMKLYPIKSITADNGNEFSSLSKIEGLDVYFAHAYSSYERGTNENFNGLLR 295
Query: 274 RHLPKGTTKTTPEEVAAIEYW--MNHYPRKMFNYKSSYEM 311
+PKG + + +Y +N PR++ Y+S+ ++
Sbjct: 296 EFIPKGCSLKELNQNLLEDYTKAINERPRRIHGYQSAKKL 335
pir||JC4048 hypothetical protein (insertion sequence IS1070) - Leuconostoc
lactis (strain NZ6009) >gi|603694 (U17353) putative
transposase [Leuconostoc lactis]
>gi|5824008|emb|CAA58055.1| (X82852) putative
transposase [Leuconostoc lactis]
Length = 305
Score = 127 bits (316), Expect = 1e-28
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 14/281 (4%)
Query: 33 SNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQENYEGLRAHSVRPSKLTTEID 92
S R IAR + ++ T+ I++ + Y A+ A R R LT I
Sbjct: 21 SVRAIARFIKRSPSTVS-------IEIHQVTPYKAEIAHALALKKRHLRGRHDTLTPAIA 73
Query: 93 CYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXX 152
+++ + K S E L G+ ++YNW+N G L+ L
Sbjct: 74 VFLNHHIGILKWSPETAAHVL-GLPFKTIYNWLNAGRLKLSLADLPDKGIRQKRQSDGRR 132
Query: 153 XXXXFGKSIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKT 212
G+SIE RPE + R GH+E+DT+ + + VL+T+TER R +R + G+
Sbjct: 133 QVFVHGRSIETRPESVKARRTFGHFEVDTMQSGKRRGDVLVTITERLSRQHSVRQVTGRN 192
Query: 213 AQAVNDELVE-LQKSYDFKSITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENH 268
+QAV L+ Q + KSIT D G EFAR +E+ + PVY+AH Y+ ERG+NE
Sbjct: 193 SQAVTPVLIRFFQGIKNAKSITVDRGREFARYNEIEQKLGIPVYFAHPYSPEERGSNEIL 252
Query: 269 NRMIRRHLPKGTTKTT--PEEVAAIEYWMNHYPRKMFNYKS 307
NR +RR +PK T +E+ I +W+N P K N++S
Sbjct: 253 NRYVRRFIPKERKIETVSAKELDQINHWINARPMKTLNWQS 293
emb|CAA05973| (AJ003194) transposase [Lactobacillus casei]
Length = 328
Score = 111 bits (276), Expect = 6e-24
Identities = 95/326 (29%), Positives = 150/326 (45%), Gaps = 37/326 (11%)
Query: 13 KHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQE 72
KHLT ++R I + +GLS R +A + + TI RE+KR YS KA
Sbjct: 4 KHLTIKER-EILMFLRAKGLSIRAVALRMGRNPSTISRELKRCA------GNYSPSKADN 56
Query: 73 NYEGLRAHSVRPSKLTTEIDCY----------------VSTRLKEDKD---SLEVIHQAL 113
+Y R + + L + + ++ R ++ S I++ +
Sbjct: 57 DYHQKRQNCHKKRLLDSHPQLWRQIVHYILDPHWSPEQITARFNKEHQWCVSYNTIYRHI 116
Query: 114 KGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLE 173
+L Y+ ++ H ++ SI ERP FIN R
Sbjct: 117 YQHNLGEKYSSRGDTGIQRHLRHKHRTRHSKNTRRHREVQTDYI--SIHERPGFINQRQR 174
Query: 174 VGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDFK--- 230
+G +EIDTVI R + +LLT+ +R R +I+ + K +Q +N LVEL + +
Sbjct: 175 IGDWEIDTVI-GRTGHSILLTVVDRLSRLTLIKKVVQKDSQEINKGLVELLGAIPKEFVH 233
Query: 231 SITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTP 285
SITPD+G EF L E+ + VY+ Y+ +RGTNEN N +IR +PK T T
Sbjct: 234 SITPDHGTEFLHLDEISERLGVTVYWPDPYSPEQRGTNENTNGLIREIIPKRTDIDNYTE 293
Query: 286 EEVAAIEYWMNHYPRKMFNYKSSYEM 311
++V + +N PRK+ NY++ YE+
Sbjct: 294 QDVEHCQKQLNQRPRKVLNYETPYEV 319
pir||S46409 hypothetical protein - Aeromonas salmonicida >gi|451858 (L27157)
[Aeromonas salmonicida gene, complete cds.], gene
product [Aeromonas salmonicida]
Length = 339
Score = 109 bits (270), Expect = 3e-23
Identities = 60/155 (38%), Positives = 91/155 (58%), Gaps = 8/155 (5%)
Query: 159 KSIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVND 218
+SI+ERP +++R +G +E DTV L + L+TL ERK R +++ + K A V D
Sbjct: 173 RSIDERPAIVDSRERLGDWEADTV-LGKQGTGALVTLVERKSRLYLVKRVANKQAGVVRD 231
Query: 219 ELVELQKSY--DFKSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENHNRMIR 273
++E+ Y +IT DNG EFA + E + Y+AH Y+S+ERG NEN N ++R
Sbjct: 232 AIIEMLTPYIEQVHTITFDNGGEFAEHKAIEEALGAETYFAHPYSSWERGLNENSNGLLR 291
Query: 274 RHLPKGT--TKTTPEEVAAIEYWMNHYPRKMFNYK 306
+ +PKGT + T E+V E W+N PRK ++
Sbjct: 292 QFIPKGTDLREVTDEDVRRAEQWLNLRPRKCLGFR 326
emb|CAB72041.1| (AJ391262) putative transposase [Neisseria meningitidis]
Length = 321
Score = 99.5 bits (244), Expect = 3e-20
Identities = 74/287 (25%), Positives = 133/287 (45%), Gaps = 19/287 (6%)
Query: 36 EIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQENYEGLRAHSVRPSKLTTEIDCYV 95
EIA+ LN+ TI RE++R Q ++ YSA+KAQ ++ +P KL +++ ++
Sbjct: 25 EIAKQLNRHKSTISREIRRHRTQGQQ---YSAEKAQRQSRTIKQRKRQPYKLDSQLIQHI 81
Query: 96 STRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKRH--------HLFYPQYXXXXX 147
T ++ +V K ++ ++ + + K + + Y
Sbjct: 82 DTLIRRKLSPEQVCAYLCKHHQITLHHSTIYRHLRQDKSNGSTLWQHLRICSKPYRKRYG 141
Query: 148 XXXXXXXXXFGKSIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRL 207
IE RP ++ + +G +E DT++ + + LLTL ER R II
Sbjct: 142 STWTRGKVPNRVGIENRPAIVDQKSRIGDWEADTIV-GKGQKSALLTLVERVTRYTIICK 200
Query: 208 IDGKTAQAVNDELVELQKSYDFK--SITPDNGHEF---ARLSEVVSCPVYYAHAYASFER 262
+D A+ V K++ + +IT DNG EF ++++ + Y+ Y S+E+
Sbjct: 201 LDSLKAEDTARAAVRTLKAHKDRVHTITMDNGKEFYQHTKITKALKAETYFCRPYHSWEK 260
Query: 263 GTNENHNRMIRRHLPKGT--TKTTPEEVAAIEYWMNHYPRKMFNYKS 307
G NEN N +IR++ PK T + E+ ++ +NH PRK Y++
Sbjct: 261 GLNENTNGLIRQYFPKQTDFRNISDREIRRVQDELNHRPRKTLGYET 307
dbj|BAA77753.1| (AB017185) transposase-like protein [Erysipelothrix rhusiopathiae]
Length = 312
Score = 98.3 bits (241), Expect = 8e-20
Identities = 83/302 (27%), Positives = 138/302 (45%), Gaps = 43/302 (14%)
Query: 31 GLSNREIARLLNKAHGTIDREM----KRGEIQLKRKVKYSAKKAQENYEGLRAHSVRPSK 86
G S R+ AR LN +H TI R K+ I ++ K + + +Y+ + HSV
Sbjct: 21 GYSMRKAARKLNISHSTISRYKNNVYKKRTIDIRDKYSHLIEYLHSHYDP-KVHSVEVCL 79
Query: 87 LTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXX 146
+ + H V+ +YNW+N G LE K + + Y +
Sbjct: 80 -----------------SNYKRYHPYKPCVTSQQVYNWINQGKLEIKPNRMCYKRRKRKK 122
Query: 147 XXXXXXXXXXFGKS------IEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKY 200
+ I RP++I R E+GH EID++I + + ++++ +R
Sbjct: 123 RISGMMNHLKWNLEEKTVLPISLRPKYIEERNEIGHLEIDSIIGKKHETAAIISIVDRCS 182
Query: 201 RTEIIRLI------DGKTAQAVNDELVELQKSYDFKSITPDNGHEFARL---SEVVSCPV 251
R +I LI D T+ + + E + KSIT DNG EF L ++ + +
Sbjct: 183 R--MIWLIKAEYRYDYYTSNLIRKFIEE--NNITTKSITVDNGLEFKTLGITAKRLGVKL 238
Query: 252 YYAHAYASFERGTNENHNRMIRRHLPKGTT--KTTPEEVAAIEYWMNHYPRKMFNYKSSY 309
Y Y SF+RGTNE N ++RR +PKG + + + I + +N PRK+F++K++Y
Sbjct: 239 YKCDPYCSFQRGTNERANAIVRRFIPKGKSMYDIAQQYLDDICFKINSMPRKIFDFKTAY 298
Query: 310 EM 311
E+
Sbjct: 299 EI 300
sp|P37247|TRA4_BACFR TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS4351 (TRANSPOSON
TN4551) >gi|154892 (M17808) ORF-1 [Transposon Tn4551]
>gi|1197006 (M17124) unknown protein [Transposon Tn4351]
Length = 326
Score = 97.5 bits (239), Expect = 1e-19
Identities = 87/313 (27%), Positives = 141/313 (44%), Gaps = 19/313 (6%)
Query: 13 KHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQE 72
KH+T + R I +S + IA + T+ RE+KR R YS + AQ
Sbjct: 3 KHITEEQRYAISMMLQIP-MSKKAIAEAIGVDKSTVYREIKRNCDA--RSGSYSMELAQR 59
Query: 73 NYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQA-LKGVSLSSLYNWVNWGWLE 131
+ + R LT + + LK+ +++ ++ L+G+++ S W W +
Sbjct: 60 KADRRKQQKHRKEVLTPAMRKRIIKLLKKGFSPEQIVGRSRLEGIAMVSHETIYRWIWED 119
Query: 132 AKRHHLFYPQYXXXXXXXXXXXXXXFGKS-------IEERPEFINNRLEVGHYEIDTVIL 184
+R + G+ I+ERPE + + G EIDT+I
Sbjct: 120 KRRGGKLHKYLRRQGRRYAKRGSKNAGRGFIPGRVDIDERPEIVELKERFGDLEIDTIIG 179
Query: 185 TRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELV-ELQKSYDF-KSITPDNGHEFAR 242
K +L T+ +R IR + GK A V V L+K + +IT DNG EFA+
Sbjct: 180 KNHKGAIL-TINDRATSRVWIRKLSGKEAIPVAKIAVWALRKVKNLIHTITADNGKEFAK 238
Query: 243 LSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPEEVAAIEYWMNH 297
E+ + Y+ Y S+ERG NEN N +IR+++PKG ++ T +++ IE +N+
Sbjct: 239 HEEIAQKLEIKFYFCKPYHSWERGANENTNGLIRQYIPKGKDFSEVTNKQIKWIENKLNN 298
Query: 298 YPRKMFNYKSSYE 310
PRK Y + E
Sbjct: 299 RPRKRLGYLTPNE 311
gb|AAD25737.1|AF100324_5 (AF100324) IS1630 transposase [Mycoplasma fermentans]
Length = 366
Score = 92.4 bits (226), Expect = 4e-18
Identities = 89/321 (27%), Positives = 142/321 (43%), Gaps = 23/321 (7%)
Query: 13 KHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKR-----GEIQLKRKVKYSA 67
K L+ +R +E S +IA++L + TI+ E+K G L K
Sbjct: 3 KKLSWNERTVLEYLLWATNYSITKIAKILGYSRTTINNEIKNNSTFWGYFALDAIEKTIT 62
Query: 68 KKAQENY----EGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYN 123
++ +N+ L + S E D + T +K + ++ ++ + S ++YN
Sbjct: 63 REKWKNHFKFLNNLNKYKEFSSLFKKEYDGKLWT-VKLTIEKIKNLYPNIDVPSFKTVYN 121
Query: 124 WVNWGWLEAKRHHLFYPQYXXXXXXXXXXXX-----XXFGKSIEERPEFINNRLEVGHYE 178
W+ G+ L Y + + RP IN R E GH+E
Sbjct: 122 WIKSGYWILNWKGLLRKVYKKGGKREKQSAARRLVGARYVRPFWSRPANINERKEFGHWE 181
Query: 179 IDTVI-LTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVEL--QKSYDFKSITPD 235
ID +I ++ + LL+ TER R + I K +N L L + + KSIT D
Sbjct: 182 IDLIIGKSKGTHCHLLSFTERVSRYGFLVKIPNKNPWNLNLYLWNLIWKHKLNVKSITQD 241
Query: 236 NGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGTT--KTTPEEVAA 290
NG EF+ L + + +Y A YASF+RG NEN N ++RR K T T EE+
Sbjct: 242 NGLEFSTLFFIGYKLKIFIYKADPYASFQRGLNENFNGLVRRFFKKKTNFDDITEEEILK 301
Query: 291 IEYWMNHYPRKMFNYKSSYEM 311
++ +N+ PR++F Y S+ EM
Sbjct: 302 VQNEINNRPREIFGYLSALEM 322
gi|3328372 (AF075600) transposase [Brochothrix campestris]
Length = 132
Score = 92.1 bits (225), Expect = 6e-18
Identities = 48/121 (39%), Positives = 76/121 (62%), Gaps = 10/121 (8%)
Query: 203 EIIRLIDGKTAQAVNDELVELQKSYD------FKSITPDNGHEFARLSEVV--SCPVYYA 254
E I ++GK A VN L+ L+K FK+IT DNG EF+ ++E++ + +Y+
Sbjct: 1 EFILKVEGKQASFVNKALLHLKKQCGSYFGALFKTITADNGKEFSGINELLKDTLAIYFT 60
Query: 255 HAYASFERGTNENHNRMIRRHLPKG--TTKTTPEEVAAIEYWMNHYPRKMFNYKSSYEMS 312
H Y+S+ERGTNENHN +IRR +PKG + + + V I+ WMN+ PR++ +++ E+
Sbjct: 61 HPYSSWERGTNENHNGIIRRFIPKGRSVSDVSDQLVQRIQTWMNNLPRRILGFQTPKELF 120
Query: 313 L 313
L
Sbjct: 121 L 121
gi|309273 (L17305) granuloma associated factor [Mus musculus]
Length = 144
Score = 88.9 bits (217), Expect = 5e-17
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 6/128 (4%)
Query: 186 RAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSY-DFKSITPDNGHEFARLS 244
+ + VL+T+TER R I+R + G+ +QAV ++ K + KSIT D+G EFA+
Sbjct: 5 KTRGDVLVTITERLTRQHIMRHVSGRNSQAVTPAIIRFFKGIKNAKSITVDHGREFAKYD 64
Query: 245 EV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKTT--PEEVAAIEYWMNHYP 299
E+ + P+Y+AH Y+ ERG+NE NR +RR +PK T +E+ I +W+N P
Sbjct: 65 EIEEQLGIPMYFAHPYSPEERGSNEVLNRYVRRFIPKERKIETISQKELDQINHWINARP 124
Query: 300 RKMFNYKS 307
K N++S
Sbjct: 125 MKTLNWQS 132
pir||S44255 insertion element - Pediococcus pentosaceus
>gi|475966|emb|CAA83666| (Z32771) insertion element
[Pediococcus pentosaceus]
Length = 301
Score = 88.2 bits (215), Expect = 9e-17
Identities = 74/252 (29%), Positives = 119/252 (46%), Gaps = 21/252 (8%)
Query: 15 LTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQENY 74
+T +R+ IE + GLSN ++ LN++ TI E+ R + Y A+ AQ +
Sbjct: 30 ITYSERIKIETFCEL-GLSNIQMGVRLNRSPSTISYELSRCQ-------PYQAELAQTDA 81
Query: 75 EGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWLEAKR 134
E R+ R +KL+ E+ + L+ + H+ ++ S+YNW+N G +
Sbjct: 82 EYKRSQCGRKTKLSDELKQKILNHLRLSWSPGMIAHEFK--LATKSIYNWLNQGRIGFSL 139
Query: 135 HHLFYPQYXXXXXXXXXXXXX---XFGKSIEERPEFINNRLEVGHYEIDTVILTRAKNK- 190
+ L P++ G+SIE+RP N R +G +E+DTV+ R +K
Sbjct: 140 NDL--PEHGVRQRRNVDQRSKYNQSLGRSIEQRPMMFNQRNRIGDFELDTVVGPRGHSKA 197
Query: 191 VLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYD--FKSITPDNGHEFARLSEVVS 248
VLLTL +RK R + +T VN+ L + +++ S T D G EF+ L + S
Sbjct: 198 VLLTLIDRKSRFLWAYRLKDRTTATVNEALTKFLTTFNGPVHSFTVDRGTEFSGLVSLES 257
Query: 249 ---CPVYYAHAY 257
YY HAY
Sbjct: 258 QYGIKTYYCHAY 269
gb|AAB01723.1| (U37284) putative transposase [Pseudomonas alcaligenes]
Length = 338
Score = 84.3 bits (205), Expect = 1e-15
Identities = 82/314 (26%), Positives = 138/314 (43%), Gaps = 45/314 (14%)
Query: 31 GLSNREIARLLNKAHGTIDREMKRGE--------------IQLKRKVKYSAKKAQENYE- 75
G S R +ARL+N++ T+ RE++R + +R V AK+ E
Sbjct: 21 GFSQRRLARLMNRSPSTVSREIRRNRNAQGEYVADDAQRLMHTRRVVCRPAKRLVPGNEL 80
Query: 76 -GLRAHSVR----PSKLTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGWL 130
L AH +R P ++ ++ S ++ E I+ A+ + + L
Sbjct: 81 FELVAHLLRQRFSPEQIAGKLRTMKSPSFEDAYVCRETIYNAIYALPVGEL--------- 131
Query: 131 EAKRHHLFYPQYXXXXXXXXXXXXXXFGK-----SIEERPEFINNRLEVGHYEIDTVILT 185
++ + + G+ SI RP I +RL GH+E D +I
Sbjct: 132 --RKELIICLRQGKTTRRPRSGGVDRRGQIPDMVSIHVRPPEIEDRLMPGHWEGD-LIKG 188
Query: 186 RAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KSITPDNGHEFAR 242
+A + TL ER I+ ++ TA + + KS+T D G E AR
Sbjct: 189 KANASAVATLVERTSGYLILAKMNDATATSAVEGFSAALNRMPLAVRKSMTYDQGREMAR 248
Query: 243 LSEVVS---CPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKT--TPEEVAAIEYWMNH 297
+E+ +Y+ ++ ++RG+NEN N +IR++LPKGT + + E++ AI Y +N
Sbjct: 249 HAEITQKTGVAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVYSQEQLDAIAYELNI 308
Query: 298 YPRKMFNYKSSYEM 311
PRK FN+K E+
Sbjct: 309 RPRKRFNWKCPIEV 322
pir||S28740 probable transposase (insertion sequence IS30) - Escherichia coli
Length = 383
Score = 83.9 bits (204), Expect = 2e-15
Identities = 94/325 (28%), Positives = 135/325 (40%), Gaps = 35/325 (10%)
Query: 14 HLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQEN 73
HLT +R I + + +S R IA LN++ TI RE++R R +Y N
Sbjct: 58 HLTLSEREEIRAGLSAK-MSIRAIATALNRSPSTISREVQRN-----RGRRYYKAVDANN 111
Query: 74 YEGLRAHSVRPSKLTTEIDCYVSTRLK-EDKDSLEVI---------HQALKGVSLSSLYN 123
A +P L + K E K S E I Q +S ++Y
Sbjct: 112 RANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYK 171
Query: 124 WVNWGWLEAKRH---------HLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEV 174
+ + EA H H G I ER I+NR +
Sbjct: 172 TLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSL 231
Query: 175 GHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KS 231
GH+E D V T KN + TL +RK R II + GK + +VN L + S KS
Sbjct: 232 GHWEGDLVSGT--KNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKS 289
Query: 232 ITPDNGHEFARLSEVV---SCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPE 286
+T D G E AR E VY+ + ++RGTNEN N +IR++ PK T + T
Sbjct: 290 LTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQH 349
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEM 311
E+ + +N+ PRK +K+ E+
Sbjct: 350 ELDLVAAQLNNRPRKTLKFKTPKEI 374
sp|P37246|TRA8_ECOLI TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS30
>gi|1361204|pir||S56509 IS30 transposase - Escherichia
coli >gi|404301|emb|CAA25376| (X00792) put. IS30
transposase [Escherichia coli] >gi|537125 (U14003) IS30
transposase [Escherichia coli] >gi|1651648|dbj|BAA15020|
(D90779) Transposase for insertion sequence element
IS30. [Escherichia coli] >gi|1742285|dbj|BAA15014|
(D90778) Transposase for insertion sequence element
IS30. [Escherichia coli] >gi|1787671 (AE000237) IS30
transposase [Escherichia coli] >gi|1790736 (AE000499)
IS30 transposase [Escherichia coli]
Length = 383
Score = 83.9 bits (204), Expect = 2e-15
Identities = 94/325 (28%), Positives = 135/325 (40%), Gaps = 35/325 (10%)
Query: 14 HLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQEN 73
HLT +R I + + +S R IA LN++ TI RE++R R +Y N
Sbjct: 58 HLTLSEREEIRAGLSAK-MSIRAIATALNRSPSTISREVQRN-----RGRRYYKAVDANN 111
Query: 74 YEGLRAHSVRPSKLTTEIDCYVSTRLK-EDKDSLEVI---------HQALKGVSLSSLYN 123
A +P L + K E K S E I Q +S ++Y
Sbjct: 112 RANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYK 171
Query: 124 WVNWGWLEAKRH---------HLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEV 174
+ + EA H H G I ER I+NR +
Sbjct: 172 TLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSL 231
Query: 175 GHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KS 231
GH+E D V T KN + TL +RK R II + GK + +VN L + S KS
Sbjct: 232 GHWEGDLVSGT--KNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKS 289
Query: 232 ITPDNGHEFARLSEVV---SCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPE 286
+T D G E AR E VY+ + ++RGTNEN N +IR++ PK T + T
Sbjct: 290 LTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQH 349
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEM 311
E+ + +N+ PRK +K+ E+
Sbjct: 350 ELDLVAAQLNNRPRKTLKFKTPKEI 374
gi|1552823 (U70214) IS30 transposase [Escherichia coli] >gi|1786450 (AE000133)
IS30 transposase [Escherichia coli]
Length = 383
Score = 83.5 bits (203), Expect = 2e-15
Identities = 94/325 (28%), Positives = 135/325 (40%), Gaps = 35/325 (10%)
Query: 14 HLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQEN 73
HLT +R I + + +S R IA LN++ TI RE++R R +Y N
Sbjct: 58 HLTLSEREEIRAGLSAK-MSIRAIATALNRSPSTISREVQRN-----RGRRYYKAVDANN 111
Query: 74 YEGLRAHSVRPSKLTTEIDCYVSTRLK-EDKDSLEVI---------HQALKGVSLSSLYN 123
A +P L + K E K S E I Q +S ++Y
Sbjct: 112 RANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYK 171
Query: 124 WVNWGWLEAKRH---------HLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEV 174
+ + EA H H G I ER I+NR +
Sbjct: 172 TLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPIHERSRNIDNRRSL 231
Query: 175 GHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KS 231
GH+E D V T KN + TL +RK R II + GK + +VN L + S KS
Sbjct: 232 GHWEGDLVSGT--KNSHIATLVDRKSRYTIIVRLRGKDSVSVNQALTDKFLSLPSELRKS 289
Query: 232 ITPDNGHEFARLSEVV---SCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPE 286
+T D G E AR E VY+ + ++RGTNEN N +IR++ PK T + T
Sbjct: 290 LTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQH 349
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEM 311
E+ + +N+ PRK +K+ E+
Sbjct: 350 ELDLVAAQLNNRPRKTLKFKTPKEI 374
dbj|BAA84890.1| (AB024946) Transposase [Escherichia coli]
Length = 383
Score = 80.8 bits (196), Expect = 1e-14
Identities = 93/325 (28%), Positives = 133/325 (40%), Gaps = 35/325 (10%)
Query: 14 HLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQEN 73
HLT +R I + + +S R IA LN++ TI RE++R R +Y N
Sbjct: 58 HLTLSEREEIRAGLSAK-MSIRAIATALNRSPSTISREVQRN-----RGRRYYKAVDANN 111
Query: 74 YEGLRAHSVRPSKLTTEIDCYVSTRLK-EDKDSLEVI---------HQALKGVSLSSLYN 123
A +P L + K E K S E I Q +S ++Y
Sbjct: 112 RANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQKTLRISPETIYK 171
Query: 124 WVNWGWLEAKRH---------HLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEV 174
+ + EA H H G I ER I+NR +
Sbjct: 172 TLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTTNIVNGTPIHERSRNIDNRRSL 231
Query: 175 GHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KS 231
GH+E D V T KN + TL +RK R II + GK + +VN L + S KS
Sbjct: 232 GHWEGDLVSGT--KNSHIATLVDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKS 289
Query: 232 ITPDNGHEFARLSEVV---SCPVYYAHAYASFERGTNENHNRMIRRHLPKG--TTKTTPE 286
+T D G E AR E VY+ + +RGTNEN N +IR++ PK + T
Sbjct: 290 LTWDRGMELARHLEFTVSTGVKVYFCDPQSPCQRGTNENTNGLIRQYFPKKICLAQYTQH 349
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEM 311
E+ + +N+ PRK +K+ E+
Sbjct: 350 ELDLVAAQLNNRPRKTLKFKTPKEI 374
emb|CAA16656| (AL021646) hypothetical protein Rv3191c [Mycobacterium
tuberculosis]
Length = 344
Score = 80.0 bits (194), Expect = 2e-14
Identities = 54/165 (32%), Positives = 93/165 (55%), Gaps = 13/165 (7%)
Query: 160 SIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDE 219
SI +RP +R E GH+E D +I+ + + + TL ER+ T +IRL+ T A
Sbjct: 171 SIHQRPFDPADRSEPGHWEGD-LIVGKNQGSAIGTLVERQ--TRLIRLLHLPTHDAYCLR 227
Query: 220 LVELQKSYDF-----KSITPDNGHEFARLSEVVS---CPVYYAHAYASFERGTNENHNRM 271
+ + D +SIT D G E AR ++ + PVY+ + + ++R +NEN N +
Sbjct: 228 IAITETMSDLPVTLVRSITWDQGIEMARHIDITADLGAPVYFCDSRSPWQRASNENSNGL 287
Query: 272 IRRHLPKGTTKT--TPEEVAAIEYWMNHYPRKMFNYKSSYEMSLA 314
+R++ PKGT+ + TP+ + A+EY +N+ PR++ ++S E+ A
Sbjct: 288 LRQYFPKGTSLSTYTPDHLRAVEYEINNRPRQVLGHRSPAELFTA 332
gi|2981017 (AF043676) putative transposase [Acinetobacter sp. BM2716]
Length = 320
Score = 79.2 bits (192), Expect = 4e-14
Identities = 90/329 (27%), Positives = 138/329 (41%), Gaps = 50/329 (15%)
Query: 11 KGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKA 70
K L+ +R I +G S + R L ++ TI RE+KR Q + + +AK A
Sbjct: 3 KYTQLSQDERYEIYATLKSKG-SIASLVRELGRSRSTIYRELKRNTGQRGYRAQQAAKFA 61
Query: 71 QENYEGLRAHSVRPSK-LTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWGW 129
+ RPS +T Y+ + D S E I AL GW
Sbjct: 62 SQR-------RYRPSSSMTAFAFAYIDYLIGLDW-SPEQISGAL-----------TQRGW 102
Query: 130 LEAKRHHLFYP--------------------QYXXXXXXXXXXXXXXFGK-SIEERPEFI 168
L+ H Y +Y K SI R + I
Sbjct: 103 LDVPSHEWIYQYIYQDKSKGGKLHLHLRHQKKYRKRGYKNTDRRGQIIDKTSIHCRDQVI 162
Query: 169 NNRLEVGHYEIDTVILTRAKNKVLLTLTERK-YRTEIIRLIDGK-TAQAVNDELVELQKS 226
+ R +G +E DTVI K LLTL +RK I+ L + ++Q + L L+ S
Sbjct: 163 DQRQRLGDFEGDTVIGKHHKG-ALLTLVDRKSLYVHIVHLGSTRASSQTITCALDRLRMS 221
Query: 227 YDFKSITPDNGHEFARLSEVVSCPV--YYAHAYASFERGTNENHNRMIRRHLPKGTT--K 282
+ + S+T DNG EF+ + + Y+A Y S +R NEN N +IR++LPK ++
Sbjct: 222 HAY-SVTFDNGKEFSEHKRITDAGIETYFADPYKSIQRARNENTNGLIRQYLPKSSSFDG 280
Query: 283 TTPEEVAAIEYWMNHYPRKMFNYKSSYEM 311
+ E++ IE+ +NH PRK + + E+
Sbjct: 281 VSNEQIEQIEFALNHRPRKTLGWYTPSEV 309
sp|P37248|TRA8_ALCEU TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1086
>gi|420944|pir||A47049 probable transposase -
Alcaligenes eutrophus >gi|48876|emb|CAA41347| (X58441)
ORF 1 [Ralstonia eutropha]
Length = 339
Score = 77.6 bits (188), Expect = 1e-13
Identities = 92/329 (27%), Positives = 150/329 (44%), Gaps = 31/329 (9%)
Query: 8 SQSKGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSA 67
+++K + L ++R+ IE W E +S R +AR L +A T+ RE++R + Y A
Sbjct: 2 TRTKYQQLQPEERMRIEIW-KAEDVSLRAMARRLGRAPSTLMRELRRNATA---RGGYGA 57
Query: 68 KKAQENYEGLRAHSVRP-SKLTTEIDCY-VSTRLKEDKDSLEVIHQALK---------GV 116
AQ R + RP +KL + + V + K S + I LK V
Sbjct: 58 MSAQA-CRTQRLKASRPVAKLAPDGVLWGVVRHFLDQKWSPQEISGTLKRAFPDQPDLNV 116
Query: 117 SLSSLYNWVN-WGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGK-----SIEERPEFINN 170
S ++YN + + E +R + + G+ SI RP +N+
Sbjct: 117 SHETIYNAIYAYPRGELRRQLIACLRQARTKRLPRSRGTDRRGQIPDMVSIHVRPPEVND 176
Query: 171 RLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEI-IRLIDGKTAQAVNDELVELQKSYD- 228
RL GH+E D +I + L ER R + +++ D A A+ +LQ
Sbjct: 177 RLMPGHWEGD-LIKGAGNQSAVGVLVERMSRAVLLVKMPDATAASALAGFTGKLQSLVAP 235
Query: 229 -FKSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKT- 283
+++T D G E AR LS VY+ ++ ++RGT EN N ++R++LPKGT +
Sbjct: 236 LRQTLTYDQGREMARHAELSAATGVRVYFCDPHSPWQRGTCENTNGLLRQYLPKGTDLSV 295
Query: 284 -TPEEVAAIEYWMNHYPRKMFNYKSSYEM 311
+ EE+ AI +N PRK N+ S ++
Sbjct: 296 YSQEELDAIADSLNGRPRKTLNWHSPLQV 324
emb|CAA06660.1| (AJ005663) putative transposase [Pseudomonas stutzeri]
Length = 342
Score = 76.1 bits (184), Expect = 4e-13
Identities = 80/316 (25%), Positives = 140/316 (43%), Gaps = 47/316 (14%)
Query: 30 EGLSNREIARLLNKAHGTIDREMKRG--------------EIQLKRKVKYSAKK---AQE 72
+G S R IARL++++ TI RE++R +++ R+V +K E
Sbjct: 20 QGFSLRRIARLIHRSPSTISREVRRNRDVRGGYSAHVAQQQMRASRRVCRPMRKLLPGSE 79
Query: 73 NYEGLRAHSVR----PSKLTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLSSLYNWVNWG 128
+E L AH +R P ++ ++ L+E E I+ A+ + + L
Sbjct: 80 RFE-LVAHMLRERLSPEQIAGKLRSMNIPSLREAYVCRETIYNAIYALPVGEL------- 131
Query: 129 WLEAKRHHLFYPQYXXXXXXXXXXXXXXFGK-----SIEERPEFINNRLEVGHYEIDTVI 183
++ + + G+ SI RP I +RL GH+E D +I
Sbjct: 132 ----RKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGD-LI 186
Query: 184 LTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYDF---KSITPDNGHEF 240
+A + TL ER ++ ++ TA + + KS+T D G E
Sbjct: 187 KGKANASSVGTLVERTSGYLMLVKMNDATATSAMEGFSAALNGMPLAMRKSMTYDQGREM 246
Query: 241 ARLSEVVS---CPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKT--TPEEVAAIEYWM 295
AR +E+ +++ ++ ++RG+NEN N +IR++LPKGT + + EE+ AI +
Sbjct: 247 ARHAEITQRTGVAIFFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEELNAIALQL 306
Query: 296 NHYPRKMFNYKSSYEM 311
N PR F++K E+
Sbjct: 307 NMRPRNRFDFKCPIEV 322
emb|CAA65663| (X96976) transposase [Enterococcus faecalis]
Length = 319
Score = 74.9 bits (181), Expect = 8e-13
Identities = 85/316 (26%), Positives = 138/316 (42%), Gaps = 27/316 (8%)
Query: 14 HLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDRE---MKRGEIQLKRKVKYSAKKA 70
HLT+ + IE ++N S + A LLN++ TI + K G L +Y K
Sbjct: 5 HLTSNELAMIEAYYNNHQ-SVAKTAVLLNRSRQTIHKVYQFFKTGHNALDYFNQYKKNKT 63
Query: 71 QENYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDSLEVIHQALKGVSLS--SLYNWVNWG 128
+ RP L+ E Y+ R+ + ++ +A +S S +LY G
Sbjct: 64 RCGR--------RPIVLSDEQTEYIQKRVVQGWTPDVIVGRAEFSISCSMRTLYRMFKQG 115
Query: 129 WLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERP-EFINNRLEVGHYEIDTVILTRA 187
E HL F +S+ +R ++ E GH E DT++ +
Sbjct: 116 VFEVT--HLPMKGKRKANGHKETRGKQSFRRSLRDRGNDYSKFNQEFGHLEGDTIVGKKH 173
Query: 188 KNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVELQKSYD---FKSITPDNGHEFAR-- 242
K+ V+ TL ER + I +G+ A + + L + +S FKS+T D G EF+
Sbjct: 174 KSAVI-TLVERLSKVIITLQPEGRRAIDIENRLNQWMQSVPKHLFKSMTFDCGKEFSNWK 232
Query: 243 -LSEVVSCPVYYAHAYASFERGTNENHNRMIRRH-LPKGTTKTTPEE--VAAIEYWMNHY 298
+S + +Y+A +RG NEN N ++R+ LPK +E + +I N+
Sbjct: 233 SISNINDIDIYFADPGTPSQRGLNENSNGLLRKDGLPKQMDFNEVDESFIQSIASKRNNI 292
Query: 299 PRKMFNYKSSYEMSLA 314
PRK NYK+ E+ L+
Sbjct: 293 PRKSLNYKTPIEVFLS 308
gi|2995638 (AF052750) transposase [Pseudomonas putida]
Length = 340
Score = 72.2 bits (174), Expect = 6e-12
Identities = 82/319 (25%), Positives = 132/319 (40%), Gaps = 54/319 (16%)
Query: 30 EGLSNREIARLLNKAHGTIDREMKRGEIQLKRKVKYSAKKAQENYEGLRAHSVRPSKLTT 89
+G S R IA++L + T+ RE++R + Y A A LR H R SKL
Sbjct: 22 QGASLRAIAQVLGRQPSTLSREVRRQS----QPGHYDASTAGARARALR-HVPRRSKL-- 74
Query: 90 EIDCYVSTRLKEDKDSLEVIHQAL-KGVSLSSLYNWVNWGWLEAKRHHLF---------- 138
L + +V+H L KG S + + W + H+
Sbjct: 75 ---------LAPGSELFQVVHSMLAKGWSPQQIAARLKDYWPDNPERHVSHETVYLTIYA 125
Query: 139 YPQYXXXXXXXXXXXXXXFGK------------------SIEERPEFINNRLEVGHYEID 180
YP+ K +I RPE + R GH+E D
Sbjct: 126 YPRGELKYRQLIGYLRQGGSKRRTRSSTGHVGERYPAEQNIRYRPEEVEGRQVPGHWESD 185
Query: 181 TVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELV-ELQKSYD--FKSITPDNG 237
++ ++ V T+ ER R I+ +D TA A + + EL + K++T D G
Sbjct: 186 LIMGANNRSAVA-TMVERTSRFCILAKLDAPTADAALEGMTRELSRMAPALLKTMTHDQG 244
Query: 238 HEFARLSEVVS---CPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPEEVAAIE 292
E A+ E+ S +Y A ++ ++RG+NEN N ++R++LPKGT + + E + I
Sbjct: 245 SEMAKHQELSSRTGMKIYVADPHSPWQRGSNENTNGLLRQYLPKGTVLSLVSQERLDEIA 304
Query: 293 YWMNHYPRKMFNYKSSYEM 311
+N PR+ +K E+
Sbjct: 305 DLLNTRPRQTLGWKFPVEV 323
gi|2555142 (AF024666) transposase 1513 [Corynebacterium striatum]
Length = 406
Score = 72.2 bits (174), Expect = 6e-12
Identities = 88/335 (26%), Positives = 145/335 (43%), Gaps = 50/335 (14%)
Query: 11 KGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQL-----KRKVKY 65
+G+ LT +DR+ IE + G S R IA+ +N+ H + RE+ R ++ +++Y
Sbjct: 58 RGRRLTVEDRVAIEAGC-RVGDSARAIAQKINRHHSVVAREITRNGWKIVDEDGTEQLRY 116
Query: 66 SAKKAQENYEG------LRAHSVRPSKLTTEIDCY--------VSTRLKE---DKDSLEV 108
+A A + G LR P+ +DC +S L+ D +S+ +
Sbjct: 117 NAHNAAVSTAGRMVRPKLRKLDESPTLRGVVVDCLARRWSPGRISAWLEHAFSDDESMRI 176
Query: 109 IHQALKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXF----------- 157
H+A+ S+LY G L A+ + +
Sbjct: 177 SHEAI----YSALYIQGK-GSLRAELEEVMKTKDVLIRGGSTRKRRARNAGVLTGRPWIK 231
Query: 158 GKSIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGK----TA 213
G I R ++R GH+E D VI K+ L+TL ER R ++ + + T
Sbjct: 232 GAEITHRSPEADDRAIPGHWEGDLVIGKGGKS-ALITLVERTSRYTLLGHLPDEHSSHTV 290
Query: 214 QAVNDELVELQKSYDFKSITPDNGHEFARLSEVV---SCPVYYAHAYASFERGTNENHNR 270
A ++V+ + K+IT D G E A ++V C V++ ++ ++R TNEN N
Sbjct: 291 VATLQDMVKDLNTEQLKTITWDQGAEMAVTAQVQIKDGCQVFFCEPHSPWQRPTNENTNG 350
Query: 271 MIRRHL-PKGT--TKTTPEEVAAIEYWMNHYPRKM 302
IRR KGT TPE VA ++ +N PR++
Sbjct: 351 EIRRRFYKKGTDFATVTPEHVAWVQNELNETPRQI 385
gi|2257708 (U73041) transposase-like protein [Thiobacillus ferrooxidans]
Length = 336
Score = 66.7 bits (160), Expect = 2e-10
Identities = 84/327 (25%), Positives = 142/327 (42%), Gaps = 40/327 (12%)
Query: 13 KHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRG-------EIQLKRKVKY 65
+ L ++ R I+R N EGLS R +A+ + ++ T+ RE++RG IQ + +
Sbjct: 6 QQLQSEQRNQIQRGLN-EGLSMRAVAKQIGRSPSTVSREVRRGLVGETYDAIQGREGRRR 64
Query: 66 SAKKAQENYEG------LRAHSVRPSKLTTEIDCYVSTRLK----EDKD---SLEVIHQA 112
+K G H++ K + E V+ RL+ EDK S E I+Q
Sbjct: 65 GVRKGVRKLVGGAPLTNAVTHAILQRKWSPE---QVAGRLRMDYPEDKQWRVSHETIYQF 121
Query: 113 LKGVSLSSLYNWVNWGWLEAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRL 172
+ L + + A R Q +SI ERP +R
Sbjct: 122 IYAHPAGELRKAL----IAALRQGTRKAQARTRGKDRRGQLRNM--RSIGERPLEAQDRE 175
Query: 173 EVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDELVE---LQKSYDF 229
GH+E D I + TL ER R ++ ++G A A + L KS
Sbjct: 176 IPGHWEGD-FIKGAFNGSAIGTLVERSSRFVLLVRMEGTDADAALEGFTRRMPLPKSI-L 233
Query: 230 KSITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKT--T 284
+++T D G E AR E+ V +Y+A ++ ++R TNEN N ++R++LP+ T + +
Sbjct: 234 RTLTYDQGKEMARHEELERKVGIRIYFADPHSPWQRPTNENTNGLLRQYLPQRTDLSGYS 293
Query: 285 PEEVAAIEYWMNHYPRKMFNYKSSYEM 311
+ + +N+ PRK +++ E+
Sbjct: 294 QRRLTQVAEELNNRPRKSLGFRTPAEV 320
gi|3582196 (AE001272) IS6770 transposase [Lactococcus lactis]
Length = 307
Score = 65.6 bits (157), Expect = 5e-10
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 157 FGKSIEERPE-FINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTA-- 213
+ +SI +RP+ + + E GH E DT++ K+ V+ TL ER + I +G+ A
Sbjct: 130 YQRSIHDRPDNYPDFNSEFGHLEGDTIVGIHHKSAVI-TLVERLSKVIITIKPNGRKALD 188
Query: 214 --QAVNDELVELQKSYDFKSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENH 268
A+N K++ FKSIT D G EF+ +S +Y+A +R NEN
Sbjct: 189 IETALNQWFSRFPKNF-FKSITFDCGKEFSNWKAISNQHDIDIYFADPGTPSQRPLNENS 247
Query: 269 NRMIRRH-LPKGTT--KTTPEEVAAIEYWMNHYPRKMFNYKSSYEMSLA 314
N ++RR+ LPK + ++++ NH PRK NY++ E+ L+
Sbjct: 248 NGILRRNGLPKSMDFREVNQTFISSVSNQRNHIPRKSLNYRTPIEIFLS 296
gi|453537 (L28754) transposase [Insertion sequence IS6770]
Length = 319
Score = 65.6 bits (157), Expect = 5e-10
Identities = 53/169 (31%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 157 FGKSIEERPE-FINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTA-- 213
+ +SI +RP+ + + E GH E DT++ K+ V+ TL ER + I +G+ A
Sbjct: 142 YQRSIHDRPDNYPDFNSEFGHLEGDTIVGIHHKSAVI-TLVERLSKVIITIKPNGRKALD 200
Query: 214 --QAVNDELVELQKSYDFKSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENH 268
A+N K++ FKSIT D G EF+ +S +Y+A +R NEN
Sbjct: 201 IETALNQWFSRFPKNF-FKSITFDCGKEFSNWKAISNQHDIDIYFADPGTPSQRPLNENS 259
Query: 269 NRMIRRH-LPKGTT--KTTPEEVAAIEYWMNHYPRKMFNYKSSYEMSLA 314
N ++RR+ LPK + ++++ NH PRK NY++ E+ L+
Sbjct: 260 NGILRRNGLPKSMDFREVNQTFISSVSNQRNHIPRKSLNYRTPIEIFLS 308
gi|1143013 (U28972) SpV1 ORF3; putative transposase [Spiroplasma citri]
Length = 322
Score = 65.2 bits (156), Expect = 7e-10
Identities = 86/327 (26%), Positives = 143/327 (43%), Gaps = 38/327 (11%)
Query: 14 HLTNQDRLNIER------WHNKEGLSN-REIARLLNKAHGTIDREMKRGEIQLKRKVKYS 66
HL+ D++ +E+ + K G N IA+ LN+ TI RE+KR K +YS
Sbjct: 4 HLSFIDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKR----FKTIDEYS 59
Query: 67 AKKAQENYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDS-LEVIHQALK------GVSLS 119
A K+ + Y R + + K T E ++ R DS E+I++ V +
Sbjct: 60 AYKSDKMYYEKRKKNNKRFKFTEEQLNFIHLRFNVYHDSPSELIYRYFLKFKVKFPVCVK 119
Query: 120 SLYNWVNWGWL----EAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEVG 175
+LY W+ G+ + RHH +Y F KSI + ++N VG
Sbjct: 120 TLYKWIRLGFYGFLKQNLRHH--GKKYKRKGKSDNRGKLTDF-KSIWDIDNKVSN---VG 173
Query: 176 HYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAV----NDELVELQKSYDFKS 231
E+DTV+ K+ +L+ + + + I+L + TA+ V D +++ K
Sbjct: 174 WLEMDTVVGKDHKSAILVLVEQLSKKYFAIKL-ENHTAREVEKKFKDIIIKNNLIGKIKG 232
Query: 232 ITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPE 286
I D G EF++ E+ VY+ A + ++ E N +R PKGT K + +
Sbjct: 233 IITDRGKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQK 292
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEMSL 313
++ + +N R N+ SS EM L
Sbjct: 293 QIDWVVNVINDKLRPCLNWISSKEMFL 319
sp|P15894|VG3_SPV1R GENE 3 PROTEIN >gi|77022|pir||S08451 hypothetical protein 3 -
spiroplasma virus 1 (SGC3) >gi|908900|emb|CAA35729|
(X51344) ORF 3 (AA 1-322) [Spiroplasma virus]
Length = 322
Score = 63.2 bits (151), Expect = 3e-09
Identities = 85/327 (25%), Positives = 142/327 (42%), Gaps = 38/327 (11%)
Query: 14 HLTNQDRLNIER------WHNKEGLSN-REIARLLNKAHGTIDREMKRGEIQLKRKVKYS 66
HL+ D++ +E+ + K G N IA+ LN+ TI RE+KR K +YS
Sbjct: 4 HLSFMDKVKLEQLLLSKIFLKKNGEQNISAIAKYLNRHRSTILREIKR----FKTIDEYS 59
Query: 67 AKKAQENYEGLRAHSVRPSKLTTEIDCYVSTRLKEDKDS-LEVIHQALK------GVSLS 119
A K+ + Y R + + K T E ++ R DS E+I++ V +
Sbjct: 60 AYKSDKMYYEKRKKNNKRFKFTEEQLNFIHLRFNVYHDSPSELIYRYFLKFKVKFPVCVK 119
Query: 120 SLYNWVNWGWL----EAKRHHLFYPQYXXXXXXXXXXXXXXFGKSIEERPEFINNRLEVG 175
+LY W+ G+ + RHH +Y F KSI + ++N VG
Sbjct: 120 TLYKWIRLGFYGFLKQNLRHH--GKKYKRKGKSDNRGKLTDF-KSIWDIDNKVSN---VG 173
Query: 176 HYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAV----NDELVELQKSYDFKS 231
E+DTV+ K+ +L+ + + + I+L + TA+ V D +++ K
Sbjct: 174 WLEMDTVVGKDHKSAILVLVEQLSKKYFAIKL-ENHTAREVEKKFKDIIIKNNLIGKIKG 232
Query: 232 ITPDNGHEFARLSEV---VSCPVYYAHAYASFERGTNENHNRMIRRHLPKGT--TKTTPE 286
I D EF++ E+ VY+ A + ++ E N +R PKGT K + +
Sbjct: 233 IITDRRKEFSKWREMEIFAETQVYFCDAGSPQQKPLIEYMNSELRHWFPKGTDFNKVSQK 292
Query: 287 EVAAIEYWMNHYPRKMFNYKSSYEMSL 313
++ + +N R N+ SS EM L
Sbjct: 293 QIDWVVNVINDKLRPCLNWISSKEMFL 319
emb|CAB62563.1| (AJ010061) unnamed protein product [Ralstonia eutropha]
Length = 342
Score = 61.7 bits (147), Expect = 8e-09
Identities = 48/164 (29%), Positives = 82/164 (49%), Gaps = 14/164 (8%)
Query: 160 SIEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLID-------GKT 212
SI R I +R GH+E D +I +A + TL ER R ++ +
Sbjct: 165 SIHVRAPEIEDRQLPGHWEGD-LIKGKANASAIGTLVERTTRLVVLVKLPHPNPATAAHV 223
Query: 213 AQAVNDELVELQKSYDFKSITPDNGHEFA---RLSEVVSCPVYYAHAYASFERGTNENHN 269
QA +D+L + + +++T D G E A +LSE VY+ Y+ ++RG+NEN N
Sbjct: 224 LQAFSDKLKTIAQPMR-QTLTYDRGSEMAEHRQLSENTGMKVYFCDPYSPWQRGSNENTN 282
Query: 270 RMIRRHLPKGTTKT--TPEEVAAIEYWMNHYPRKMFNYKSSYEM 311
++R++ PKGT + + E++ A+ +N PR ++ E+
Sbjct: 283 GLLRQYFPKGTDLSGYSQEQLDAVADELNGRPRMTLGWRKPIEV 326
gi|624697 (L38972) transposase [Plasmid pHKK701]
Length = 319
Score = 55.4 bits (131), Expect = 6e-07
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 10/163 (6%)
Query: 161 IEERPEFINNRLEVGHYEIDTVILTRAKNKVLLTLTERKYRTEIIRLIDGKTAQAVNDEL 220
+E ++ + E GH E DT++ K+ V+ TL ER + I +G+ A + + L
Sbjct: 147 VERETDYPTFKEEFGHIEGDTIVGIHHKSAVI-TLVERLSKIIITLKPEGRKAIDIENTL 205
Query: 221 VELQKSYD---FKSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENHNRMIRR 274
S FKSIT D G EF+ LS +Y+A +R NEN N ++R+
Sbjct: 206 NHWFGSIPRHLFKSITFDCGKEFSNWKALSNQHDIAIYFADPGTPTQRALNENSNGLLRK 265
Query: 275 H-LPKGTTKTTPEE--VAAIEYWMNHYPRKMFNYKSSYEMSLA 314
LPK ++ ++++ N+ PRK +Y++ E+ ++
Sbjct: 266 DGLPKNMDFNQVDQAFISSVANKRNNIPRKSLDYQTPLEVFMS 308
sp|P29472|YLA3_LACAC HYPOTHETICAL 14.4 KD PROTEIN IN LAF 3'REGION >gi|149573 (M57961)
putative [Lactobacillus sp.]
Length = 124
Score = 46.1 bits (107), Expect = 4e-04
Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 11 KGKHLTNQDRLNIERWHNKEGLSNREIARLLNKAHGTIDREMKRGEIQL--KRKVKYSAK 68
KGKHL+ ++R+ I+ K+G S R IAR LN + TI E+KRG ++L + KY A
Sbjct: 13 KGKHLSFEERVIIQL-RLKDGYSLRAIARELNCSPSTISYEVKRGTVKLYHGKVKKYKAT 71
Query: 69 KAQENYEGLRAHSVRPSKLTTEIDC--YVSTRLKEDKDSLEV 108
+ + Y+ R + R S + YV +D SL+V
Sbjct: 72 QGHDAYKAHRKNCGRKSDFLRKAQFMRYVHKHFFKDGWSLDV 113
gi|3241975 (U85710) transposase [Sulfolobus solfataricus]
Length = 311
Score = 43.4 bits (100), Expect = 0.003
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 230 KSITPDNGHEFAR---LSEVVSCPVYYAHAYASFERGTNENHNRMIRRHLPKGTTKTTPE 286
K++T D G E A L E + VY+ ++ +++GT EN N +IR++LPKG +
Sbjct: 208 KTLTYDRGREMAEHKILEEDLGIDVYFCDPHSPWQKGTCENMNGLIRQYLPKGIDLNQAD 267
Query: 287 E--VAAIEYWMNHYPRK 301
+ + + +N PRK
Sbjct: 268 QHYLNQVAMSLNTRPRK 284
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.316 0.132 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81336900
Number of Sequences: 457798
Number of extensions: 3075163
Number of successful extensions: 7956
Number of sequences better than 1.0e-02: 37
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7850
Number of HSP's gapped (non-prelim): 47
length of query: 315
length of database: 140,871,481
effective HSP length: 57
effective length of query: 258
effective length of database: 114,776,995
effective search space: 29612464710
effective search space used: 29612464710
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 96 (41.8 bits)