Score E
Sequences producing significant alignments: (bits) Value
sp|P42920|RL3_BACSU 50S RIBOSOMAL PROTEIN L3 (BL3) >gi|1165... 302 1e-81
sp|P28600|RL3_BACST 50S RIBOSOMAL PROTEIN L3 >gi|421473|pir... 298 2e-80
dbj|BAA75271.1| (AB017508) rplC homologue (identity of 81% ... 296 7e-80
sp|P10134|RL3_MYCCA 50S RIBOSOMAL PROTEIN L3 >gi|71074|pir|... 229 1e-59
dbj|BAA08831| (D50302) Ribosomal Protein L3 [Bacillus subti... 228 2e-59
gb|AAD40583.1|AF115283_2 (AF115283) ribosomal protein L3 [L... 208 4e-53
gb|AAF09892.1|AE001892_3 (AE001892) ribosomal protein L3 [D... 199 1e-50
gi|2688413 (AE001152) ribosomal protein L3 (rplC) [Borrelia... 195 3e-49
sp|P94267|RL3_BORBU 50S RIBOSOMAL PROTEIN L3 192 1e-48
sp|O24689|RL3_SYNP6 50S RIBOSOMAL PROTEIN L3 >gi|2446890|db... 192 1e-48
gi|1685371 (U78193) ribosomal protein L3 [Borrelia burgdorf... 192 1e-48
gb|AAF30640.1|AE002122_9 (AE002122) ribosomal protein L3 [U... 190 5e-48
sp|P30762|RL3_MYCLE 50S RIBOSOMAL PROTEIN L3 >gi|2344833|em... 190 7e-48
sp|P95049|RL3_MYCTU 50S RIBOSOMAL PROTEIN L3 >gi|1806169|em... 185 2e-46
sp|P38515|RL3_THEMA 50S RIBOSOMAL PROTEIN L3 >gi|481929|pir... 185 2e-46
sp|O06044|RL3_MYCBO 50S RIBOSOMAL PROTEIN L3 >gi|2113866|em... 184 5e-46
sp|P02386|RL3_ECOLI 50S RIBOSOMAL PROTEIN L3 >gi|71072|pir|... 182 2e-45
sp|P51314|RK3_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >g... 182 3e-45
sp|P73320|RL3_SYNY3 50S RIBOSOMAL PROTEIN L3 >gi|1652427|db... 178 4e-44
sp|P52860|RL3_THETH 50S RIBOSOMAL PROTEIN L3 >gi|1143612|em... 176 9e-44
sp|O52332|RL3_MYCGA 50S RIBOSOMAL PROTEIN L3 >gi|2766503 (A... 176 2e-43
sp|P15766|RK3_CYAPA CYANELLE 50S RIBOSOMAL PROTEIN L3 >gi|7... 171 3e-42
emb|CAA35536| (X17498) L3 ribosomal protein (AA 1-209) [Cya... 170 9e-42
gb|AAD22128.1|AC006224_10 (AC006224) 50S ribosomal protein ... 169 1e-41
sp|P44344|RL3_HAEIN 50S RIBOSOMAL PROTEIN L3 >gi|1075249|pi... 169 2e-41
sp|O46894|RK3_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >g... 167 8e-41
sp|P49569|RK3_ODOSI CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >g... 165 2e-40
sp|P47397|RL3_MYCGE 50S RIBOSOMAL PROTEIN L3 >gi|1361810|pi... 158 3e-38
dbj|BAA31509| (AB010877) chloroplast ribosomal protein L3 [... 157 5e-38
sp|P75580|RL3_MYCPN 50S RIBOSOMAL PROTEIN L3 >gi|2146608|pi... 157 7e-38
sp|O66431|RL3_AQUAE 50S RIBOSOMAL PROTEIN L3 >gi|2982767 (A... 156 1e-37
gi|4165865 (AF040100) ribosomal protein L3 [Aquifex pyrophi... 152 3e-36
gb|AAD18786| (AE001647) L3 Ribosomal Protein [Chlamydia pne... 148 4e-35
sp|O83219|RL3_TREPA 50S RIBOSOMAL PROTEIN L3 >gi|3322453 (A... 146 2e-34
sp|P48952|RL3_RICPR 50S RIBOSOMAL PROTEIN L3 >gi|3861199|em... 135 3e-31
gb|AAC68129.1| (AE001323) L3 Ribosomal Protein [Chlamydia t... 135 3e-31
sp|P72233|RL3_PLARO 50S RIBOSOMAL PROTEIN L3 >gi|1679861|em... 124 5e-28
ref|NP_011736.1|MRPL9| Mitochondrial ribosomal protein MRPL... 116 1e-25
emb|CAA46148| (X65014) YmL9 mitochondrial ribosomal protei... 115 3e-25
gi|406362 (U02153) unknown [Mycoplasma genitalium] 113 1e-24
sp|P11252|RL3_YERPS 50S RIBOSOMAL PROTEIN L3 >gi|79204|pir|... 111 6e-24
gb|AAF12907.1|AF022186_29 (AF022186) unknown; 50S ribosomal... 109 1e-23
sp|P94799|RL3_ACTAC 50S RIBOSOMAL PROTEIN L3 >gi|1841322|db... 106 1e-22
ref|NP_009139.1|| ribosomal protein, mitochondrial, L3 >gi|... 96 2e-19
dbj|BAA11007| (D64127) ribosomal protein L3 [Bacillus subti... 92 3e-18
sp|P18665|RM03_RAT MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L3 >... 87 1e-16
pir||S31154 ribosomal protein L3 - Mycobacterium leprae (fr... 84 1e-15
emb|CAB73693.1| (AL139079) 50S ribosomal protein L3 [Campyl... 82 3e-15
sp|P49404|RM03_CAEEL PUTATIVE MITOCHONDRIAL 60S RIBOSOMAL P... 80 1e-14
gi|4155816 (AE001547) 50S RIBOSOMAL PROTEIN L3 [Helicobacte... 79 3e-14
sp|P56031|RL3_HELPY 50S RIBOSOMAL PROTEIN L3 >gi|2314481|gb... 78 4e-14
emb|CAA23634| (V00344) ribosomal protein L3 [Escherichia coli] 74 1e-12
sp|O26110|RL3_METTH 50S RIBOSOMAL PROTEIN L3P >gi|2621048 (... 72 4e-12
sp|O28354|RL3_ARCFU 50S RIBOSOMAL PROTEIN L3P >gi|2648621 (... 67 1e-10
sp|P20279|RL3_HALMA 50S RIBOSOMAL PROTEIN L3P (HMAL3) (HL1)... 60 2e-08
sp|P54014|RL3_METJA 50S RIBOSOMAL PROTEIN L3P >gi|2144769|p... 58 5e-08
sp|Q06844|RL3_HALHA 50S RIBOSOMAL PROTEIN L3P >gi|629397|pi... 56 3e-07
emb|CAB49264.1| (AJ248284) LSU ribosomal protein L3P (rpl3P... 54 8e-07
sp|O59418|RL3_PYRHO 50S RIBOSOMAL PROTEIN L3P >gi|3258212|d... 53 1e-06
emb|CAB57584.1| (Y18930) ribosomal protein L3 (HMAL3) [Sulf... 53 2e-06
sp|Q9YFM2|RL3_AERPE 50S RIBOSOMAL PROTEIN L3P >gi|5103618|d... 47 1e-04
emb|CAA10068| (AJ012585) ribosomal protein L3 [Tetrahymena ... 41 0.008
sp|P42920|RL3_BACSU 50S RIBOSOMAL PROTEIN L3 (BL3) >gi|1165303 (U43929) L3 [Bacillus
subtilis] >gi|2632383|emb|CAB11892| (Z99104) ribosomal
protein L3 (BL3) [Bacillus subtilis]
Length = 209
Score = 302 bits (766), Expect = 1e-81
Identities = 146/209 (69%), Positives = 174/209 (82%), Gaps = 2/209 (0%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M+KGILG+K+GMTQ+F ENG+LIPVTVIEA PN VLQ K+ E DGYEA Q+GFD RE L
Sbjct: 1 MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKL 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFKGLE--GAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
+NKP KGH AKA T PKRFV+E +G+E EVG E+ V+ F+AG++VDVTG SKGKGFQ
Sbjct: 61 SNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQ 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
G IKRHGQSRGPM+HGSRYHRRPGSMGPV N+V KGK L GRMG +++TVQNL I +V
Sbjct: 121 GAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVD 180
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSAIKAK 207
E+N++L+KGNVPGAKKSLI VKSA+K+K
Sbjct: 181 AERNLLLIKGNVPGAKKSLITVKSAVKSK 209
sp|P28600|RL3_BACST 50S RIBOSOMAL PROTEIN L3 >gi|421473|pir||S24363 ribosomal protein
L3 - Bacillus stearothermophilus >gi|40102|emb|CAA47402|
(X67014) ribosomal protein L3 [Bacillus
stearothermophilus]
Length = 213
Score = 298 bits (756), Expect = 2e-80
Identities = 143/209 (68%), Positives = 171/209 (81%), Gaps = 2/209 (0%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M+KGILG+K+GMTQIF ENG+LIPVTVI ATPN VLQ K++E DGYEA Q+GF+ + E
Sbjct: 1 MTKGILGRKIGMTQIFAENGDLIPVTVIHATPNVVLQKKTIENDGYEAIQLGFEDISEKR 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFKG--LEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
NKP GHAAKANT PKRF+RE +G + EVG E+ VD F+ GD+VDVTG SKGKGFQ
Sbjct: 61 ANKPQIGHAAKANTAPKRFIREIRGANINEYEVGQEVKVDIFSEGDIVDVTGISKGKGFQ 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
G IKRHGQSRGPMAHGSRYHRRPGSMG +A N+V K K L GRMG +RVT+QNL I +V
Sbjct: 121 GAIKRHGQSRGPMAHGSRYHRRPGSMGAIAPNRVFKTKNLPGRMGGERVTIQNLKIVKVD 180
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSAIKAK 207
PE+N++L+KGNVPG +K L++VKSA+KAK
Sbjct: 181 PERNLLLIKGNVPGPRKGLVIVKSAVKAK 209
dbj|BAA75271.1| (AB017508) rplC homologue (identity of 81% to B. subtilis )
[Bacillus halodurans]
Length = 209
Score = 296 bits (751), Expect = 7e-80
Identities = 146/209 (69%), Positives = 172/209 (81%), Gaps = 2/209 (0%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
MSKGILGKKVGMTQ+F ENG++IPVTVIEA PN VLQ K+V++DGYEA Q+GFD ++
Sbjct: 1 MSKGILGKKVGMTQVFAENGDVIPVTVIEAAPNVVLQKKTVDSDGYEAVQLGFDDQKQNN 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFKG--LEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
NKP KGHAAKA T PKRF++E +G L+ EVG EI VD FA GD+VDVTGTSKGKGF
Sbjct: 61 ANKPEKGHAAKAETAPKRFIKEIRGVNLDEFEVGQEIKVDAFAEGDIVDVTGTSKGKGFA 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
G IKRH Q+RGPM+HGSRYHRRPGSMGPV N+V KGK L GRMG ++VTVQNL I +V
Sbjct: 121 GAIKRHNQARGPMSHGSRYHRRPGSMGPVDPNRVFKGKALPGRMGGEQVTVQNLEIIKVD 180
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSAIKAK 207
E+N++LVKGNVPGAKKS + V+SAIK+K
Sbjct: 181 AERNLLLVKGNVPGAKKSYVTVRSAIKSK 209
sp|P10134|RL3_MYCCA 50S RIBOSOMAL PROTEIN L3 >gi|71074|pir||R5YM3C ribosomal protein L3
- Mycoplasma capricolum (SGC3) >gi|44209|emb|CAA29704|
(X06414) ribosomal protein L3 (AA 1-223) [Mycoplasma
capricolum]
Length = 223
Score = 229 bits (578), Expect = 1e-59
Identities = 112/204 (54%), Positives = 145/204 (70%), Gaps = 2/204 (0%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG+KV MTQ+FT +G+L+PVTV+E PNTVLQVK++++DGY A Q+G R L N
Sbjct: 2 KGILGRKVEMTQVFTNSGQLVPVTVVEVLPNTVLQVKTIDSDGYVAVQLGTTDKRVNLVN 61
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPI 121
KP GH KAN+ PKRFV+E + ++G E+G I V D F +G+ VDVTG SKGKGF G I
Sbjct: 62 KPELGHFKKANSNPKRFVKEIRNMQGYEIGQVINVSDIFVSGEYVDVTGISKGKGFAGGI 121
Query: 122 KRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEK 181
KRH SRGPMAHGS YHR GSMG + N++ K KK+ G MGN + T+QNL I +
Sbjct: 122 KRHNYSRGPMAHGSGYHRGIGSMGAI-INRIFKSKKMPGHMGNAKRTIQNLEIIAIDQSN 180
Query: 182 NVILVKGNVPGAKKSLIVVKSAIK 205
N++L+KG +PG K S + +K +K
Sbjct: 181 NIMLIKGPIPGPKNSFVQIKQNVK 204
dbj|BAA08831| (D50302) Ribosomal Protein L3 [Bacillus subtilis]
Length = 162
Score = 228 bits (576), Expect = 2e-59
Identities = 111/162 (68%), Positives = 133/162 (81%), Gaps = 2/162 (1%)
Query: 48 ATQVGFDTLREVLTNKPAKGHAAKANTTPKRFVREFKGLE--GAEVGAEITVDTFAAGDV 105
A Q+GFD RE L+NKP KGH AKA T PKRFV+E +G+E EVG E+ V+ F+AG++
Sbjct: 1 AIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEI 60
Query: 106 VDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNK 165
VDVTG SKGKGFQG IKRHGQSRGPM+HGSRYHRRPGSMGPV N+V KGK L GRMG +
Sbjct: 61 VDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGE 120
Query: 166 RVTVQNLVIAQVLPEKNVILVKGNVPGAKKSLIVVKSAIKAK 207
++TVQNL I +V E+N++L+KGNVPGAKKSLI VKSA+K+K
Sbjct: 121 QITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK 162
gb|AAD40583.1|AF115283_2 (AF115283) ribosomal protein L3 [Leptospira interrogans]
Length = 206
Score = 208 bits (523), Expect = 4e-53
Identities = 103/204 (50%), Positives = 142/204 (69%), Gaps = 3/204 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M+KG++GKKVGM+QIF E G +IPVTV+E P V QVKSVE DGYEA Q+ F ++E+
Sbjct: 1 MAKGLIGKKVGMSQIFDEQGNIIPVTVLEVGPCAVSQVKSVENDGYEAIQLAFQDIKEIQ 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFKGL-EGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQ 118
T+K K H AKA PK+ ++EF+ + GA + + D FA DVV VTG SKG+G+Q
Sbjct: 61 TSKAEKNHLAKAGLGPKKVLKEFRSFGDSPTAGAVLKIQDVFAVSDVVKVTGVSKGRGYQ 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G +KRHG + GP AHGSR+HR PGSMG + ++V KG KL GR G+++ TV+NL + ++
Sbjct: 121 GVVKRHGHAGGPGAHGSRFHRHPGSMGANSTPSRVFKGVKLPGRTGSQKTTVRNLKVVRI 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVK 201
EKN++ V G VPG ++I ++
Sbjct: 181 NEEKNLLFVSGAVPGTANTVITIE 204
gb|AAF09892.1|AE001892_3 (AE001892) ribosomal protein L3 [Deinococcus radiodurans]
Length = 211
Score = 199 bits (501), Expect = 1e-50
Identities = 106/206 (51%), Positives = 141/206 (67%), Gaps = 5/206 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG K+GMTQI+ +N IPVTV+ A P ++Q K+ +TDGYEA Q+G+ E N
Sbjct: 2 KGILGTKIGMTQIW-KNDRAIPVTVVLAGPCPIVQRKTAQTDGYEAVQIGYAPKAERKVN 60
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
KP +GH AKA P R +REF+G A G + VD FA G+ +D TGTSKGKG QG +K
Sbjct: 61 KPMQGHFAKAGVAPTRILREFRGF--APDGDSVNVDIFAEGEKIDATGTSKGKGTQGVMK 118
Query: 123 RHGQSRGPMAHGS-RYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPE 180
R + GP +HGS ++HRRPGS+G +V KGK++AG MG +RVTVQNL + ++
Sbjct: 119 RWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERVTVQNLEVVEIRAG 178
Query: 181 KNVILVKGNVPGAKKSLIVVKSAIKA 206
+N+ILVKG +PGA L+V++SA KA
Sbjct: 179 ENLILVKGAIPGANGGLVVLRSAAKA 204
gi|2688413 (AE001152) ribosomal protein L3 (rplC) [Borrelia burgdorferi]
Length = 206
Score = 195 bits (490), Expect = 3e-49
Identities = 102/204 (50%), Positives = 134/204 (65%), Gaps = 2/204 (0%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++GKKVGMTQIF +NG ++PVTVIE PN ++ K+V+ DGY A G L+ +K
Sbjct: 3 GLIGKKVGMTQIFQKNGIVVPVTVIEFQPNYIIGKKTVDRDGYSALIAGSVDLKSSKVSK 62
Query: 64 PAKG-HAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
P KG + + + PKR+V E KGL+G + G EI VD F + VDVTGT+KGKGFQG +K
Sbjct: 63 PIKGQYKSLKDIEPKRYVIELKGLDGYDAGDEIKVDVFKSVKYVDVTGTTKGKGFQGAMK 122
Query: 123 RHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEK 181
RH S GP +HGS++HR G G + KG K+AGRMG + T+QNL + + EK
Sbjct: 123 RHNFSGGPSSHGSKFHRHLGGTGQATTPARTFKGTKMAGRMGGNQQTIQNLEVVLIDEEK 182
Query: 182 NVILVKGNVPGAKKSLIVVKSAIK 205
+LVKG VPGAK S +VVK + K
Sbjct: 183 RALLVKGAVPGAKGSFVVVKKSKK 206
sp|P94267|RL3_BORBU 50S RIBOSOMAL PROTEIN L3
Length = 206
Score = 192 bits (484), Expect = 1e-48
Identities = 101/204 (49%), Positives = 133/204 (64%), Gaps = 2/204 (0%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++GKKVGMTQIF +NG ++PVTVIE PN ++ K+V+ DGY A G L+ +K
Sbjct: 3 GLIGKKVGMTQIFQKNGIVVPVTVIEFQPNYIIGKKTVDRDGYSALIAGSVDLKSSKVSK 62
Query: 64 PAKG-HAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
P KG + + + PKR+V E KGL+G + G EI VD F + VDVTGT+KGKGFQG +K
Sbjct: 63 PIKGQYKSLKDIEPKRYVIELKGLDGYDAGDEIKVDVFKSVKYVDVTGTTKGKGFQGAMK 122
Query: 123 RHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEK 181
RH S GP +HGS++HR G G + KG K+AGRM + T+QNL + + EK
Sbjct: 123 RHNFSGGPSSHGSKFHRHLGGTGQATTPARTFKGTKMAGRMAGNQQTIQNLEVVLIDEEK 182
Query: 182 NVILVKGNVPGAKKSLIVVKSAIK 205
+LVKG VPGAK S +VVK + K
Sbjct: 183 RALLVKGAVPGAKGSFVVVKKSKK 206
sp|O24689|RL3_SYNP6 50S RIBOSOMAL PROTEIN L3 >gi|2446890|dbj|BAA22449| (AB000111) 50S
ribosomal protein L3 [Synechococcus sp.]
Length = 213
Score = 192 bits (484), Expect = 1e-48
Identities = 98/206 (47%), Positives = 137/206 (65%), Gaps = 3/206 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
MS GILG K+GMTQIF E+G+ +PVTVI+A P + Q+K+V TDGY A Q+GF +RE
Sbjct: 1 MSIGILGTKLGMTQIFDESGKAVPVTVIQAGPCPITQIKTVATDGYNAIQIGFLEVREKQ 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
+KP GH +KA P R + E++ +G E+G +T D F AG VDV G + G+GF
Sbjct: 61 LSKPELGHLSKAGAPPLRHLLEYRVPSTDGLELGQALTADRFEAGQKVDVQGHTIGRGFT 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G KRHG +RGPM+HGS+ HR PGS G +V GK++AGR GN + T++ L + +V
Sbjct: 121 GYQKRHGFARGPMSHGSKNHRLPGSTGAGTTPGRVYPGKRMAGRSGNDKTTIRGLTVVRV 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVKSA 203
++N++LVKG+VPG +L+ + A
Sbjct: 181 DADRNLLLVKGSVPGKPGALLNITPA 206
gi|1685371 (U78193) ribosomal protein L3 [Borrelia burgdorferi]
Length = 206
Score = 192 bits (484), Expect = 1e-48
Identities = 101/204 (49%), Positives = 133/204 (64%), Gaps = 2/204 (0%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++GKKVGMTQIF +NG ++PVTVIE PN ++ K+V+ DGY A G L+ +K
Sbjct: 3 GLIGKKVGMTQIFQKNGIVVPVTVIEFQPNYIIGKKTVDRDGYSALIAGSVDLKSSKVSK 62
Query: 64 PAKG-HAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
P KG + + + PKR+V E KGL+G + G EI VD F + VDVTGT+KGKGFQG +K
Sbjct: 63 PIKGQYKSLKDIEPKRYVIELKGLDGYDAGDEIKVDVFKSVKYVDVTGTTKGKGFQGAMK 122
Query: 123 RHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEK 181
RH S GP +HGS++HR G G + KG K+AGRM + T+QNL + + EK
Sbjct: 123 RHNFSGGPSSHGSKFHRHLGGTGQATTPARTFKGTKMAGRMAGNQQTIQNLEVVLIDEEK 182
Query: 182 NVILVKGNVPGAKKSLIVVKSAIK 205
+LVKG VPGAK S +VVK + K
Sbjct: 183 RALLVKGPVPGAKGSFVVVKKSKK 206
gb|AAF30640.1|AE002122_9 (AE002122) ribosomal protein L3 [Ureaplasma urealyticum]
Length = 233
Score = 190 bits (479), Expect = 5e-48
Identities = 101/208 (48%), Positives = 136/208 (64%), Gaps = 6/208 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
K +LG KVGMTQ+FTE G+ + TVI PN VL VK+ E DGY A Q+G++T++E N
Sbjct: 2 KSLLGTKVGMTQVFTETGKAVAATVIYVEPNKVLAVKTNEKDGYSAIQIGYETVKEKALN 61
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
KP G KAN+ PKR ++EF+ + AEVGAE+TV F G +V+ +KG GF G IK
Sbjct: 62 KPLLGQFKKANSDPKRHIKEFRDVV-AEVGAELTVSEFEPGQLVNAQAYTKGHGFTGSIK 120
Query: 123 RHGQSRGPMAHGSRY-HRRPGSM----GPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
RH S GPM HG+ Y HR GS+ G A +V KG KL G G++ VT +NL++ V
Sbjct: 121 RHNFSMGPMGHGAGYPHRYVGSIAKGRGGSQAQRVFKGTKLPGHYGHELVTTKNLLVLDV 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+N+IL+KG +PG K S++++KSA K
Sbjct: 181 KANENLILIKGAIPGPKGSIVLLKSAKK 208
sp|P30762|RL3_MYCLE 50S RIBOSOMAL PROTEIN L3 >gi|2344833|emb|CAB11435| (Z98756)
ribosomal protein L3 [Mycobacterium leprae]
Length = 217
Score = 190 bits (478), Expect = 7e-48
Identities = 100/210 (47%), Positives = 136/210 (64%), Gaps = 7/210 (3%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG K+GMTQ+F EN ++PVTV++A PN V +++++E DGY A Q+ + + N
Sbjct: 4 KGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTRIRTLEPDGYSAVQLAYGEISPRKVN 63
Query: 63 KPAKGHAAKANTTPKRFVREFK-----GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGF 117
KP G A P+R++ E + EVG E+T + FA VDVTGTSKGKGF
Sbjct: 64 KPVTGQYNSAGVNPRRYLAELRLDHPDAAAEYEVGQELTAEIFADATYVDVTGTSKGKGF 123
Query: 118 QGPIKRHGQSRGPMAHGSR-YHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIA 175
G +KRHG +HG++ HRRPGS+G A +V KG ++AGRMGN RVTVQNL++
Sbjct: 124 SGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVQNLLVH 183
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+V E V+L+KG VPG L++V+SAIK
Sbjct: 184 KVDTENGVLLIKGAVPGRTGGLVMVRSAIK 213
sp|P95049|RL3_MYCTU 50S RIBOSOMAL PROTEIN L3 >gi|1806169|emb|CAB06464| (Z84395) rplC
[Mycobacterium tuberculosis]
Length = 217
Score = 185 bits (466), Expect = 2e-46
Identities = 98/210 (46%), Positives = 135/210 (63%), Gaps = 7/210 (3%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG K+GMTQ+F E+ ++PVTV++A PN V ++++ E DGY A Q+ + + N
Sbjct: 4 KGILGTKLGMTQVFDESNRVVPVTVVKAGPNVVTRIRTPERDGYSAVQLAYGEISPRKVN 63
Query: 63 KPAKGHAAKANTTPKRFVREFK-----GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGF 117
KP G A P+R++ E + +VG E+T + FA G VDVTGTSKGKGF
Sbjct: 64 KPLTGQYTAAGVNPRRYLAELRLDDSDAATEYQVGQELTAEIFADGSYVDVTGTSKGKGF 123
Query: 118 QGPIKRHGQSRGPMAHGSR-YHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIA 175
G +KRHG +HG++ HRRPGS+G A +V KG ++AGRMGN RVTV NL++
Sbjct: 124 AGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVLNLLVH 183
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+V E V+L+KG VPG L++V+SAIK
Sbjct: 184 KVDAENGVLLIKGAVPGRTGGLVMVRSAIK 213
sp|P38515|RL3_THEMA 50S RIBOSOMAL PROTEIN L3 >gi|481929|pir||S40188 ribosomal protein
L3 - Thermotoga maritima >gi|437923|emb|CAA79777|
(Z21677) ribosomal protein L3 [Thermotoga maritima]
>gi|4982064|gb|AAD36566.1|AE001798_31 (AE001798)
ribosomal protein L3 [Thermotoga maritima]
Length = 207
Score = 185 bits (466), Expect = 2e-46
Identities = 97/204 (47%), Positives = 138/204 (67%), Gaps = 6/204 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
K I+G+K+GMT++F N + +PVTVI+A P V+Q K+VE DGY A Q+GF+ ++V N
Sbjct: 2 KMIIGRKIGMTRVFVGN-DSVPVTVIKAGPCVVVQKKTVEKDGYNAVQLGFEKAKKV--N 58
Query: 63 KPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGP 120
KP GH K P + +REF+ + E G I VD F G+ VDVTG +KG+GF G
Sbjct: 59 KPLAGHFKKFGVEPMKILREFRVENPDEYEPGQVIKVDVFEKGEYVDVTGWTKGRGFAGA 118
Query: 121 IKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLP 179
+KR G S GP +HGS++HR GS+G K+ KGKK+ GR GN+RVTV+NL + + P
Sbjct: 119 MKRWGFSGGPKSHGSKFHRELGSVGQHTEPAKIWKGKKMPGRYGNERVTVRNLQVVDIDP 178
Query: 180 EKNVILVKGNVPGAKKSLIVVKSA 203
E ++++VKG VPGA+ L++++SA
Sbjct: 179 ENDLLVVKGGVPGARGGLVLIRSA 202
sp|O06044|RL3_MYCBO 50S RIBOSOMAL PROTEIN L3 >gi|2113866|emb|CAA73672| (Y13228) rplC
[Mycobacterium bovis BCG]
Length = 217
Score = 184 bits (462), Expect = 5e-46
Identities = 98/210 (46%), Positives = 134/210 (63%), Gaps = 7/210 (3%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG K+GMTQ+F E+ + PVTV++A PN V ++++ E DGY A Q+ + + N
Sbjct: 4 KGILGTKLGMTQVFDESNRVAPVTVVKAGPNVVTRIRTPERDGYSAVQLAYGEISPRKVN 63
Query: 63 KPAKGHAAKANTTPKRFVREFK-----GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGF 117
KP G A P+R++ E + +VG E+T + FA G VDVTGTSKGKGF
Sbjct: 64 KPLTGQYTAAGVNPRRYLAELRLDDSDAATEYQVGQELTAEIFADGSYVDVTGTSKGKGF 123
Query: 118 QGPIKRHGQSRGPMAHGSR-YHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIA 175
G +KRHG +HG++ HRRPGS+G A +V KG ++AGRMGN RVTV NL++
Sbjct: 124 AGTMKRHGFRGQGASHGAQAVHRRPGSIGGCATPARVFKGTRMAGRMGNDRVTVLNLLVH 183
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+V E V+L+KG VPG L++V+SAIK
Sbjct: 184 KVDAENGVLLIKGAVPGRTGGLVMVRSAIK 213
sp|P02386|RL3_ECOLI 50S RIBOSOMAL PROTEIN L3 >gi|71072|pir||R5EC3 ribosomal protein L3
- Escherichia coli >gi|42827|emb|CAA26460| (X02613)
ribosomal protein L3 (rplC) (aa 1-209) [Escherichia
coli] >gi|606254|gb|AAA58117.1| (U18997) 50S ribosomal
subunit protein L3 [Escherichia coli] >gi|1789716
(AE000408) 50S ribosomal subunit protein L3 [Escherichia
coli] >gi|223116|prf||0509226A protein L3 [Escherichia
coli]
Length = 209
Score = 182 bits (457), Expect = 2e-45
Identities = 108/207 (52%), Positives = 132/207 (63%), Gaps = 4/207 (1%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++GKKVGMT+IFTE+G IPVTVIE N V QVK + DGY A QV + K
Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62
Query: 64 PAKGHAAKANTTPKRFVREFKGLEGAE--VGAEITVDTFAAGDVVDVTGTSKGKGFQGPI 121
P GH AKA R + EF+ EG E VG I+V+ FA VDVTGTSKGKGF G +
Sbjct: 63 PEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSKGKGFAGTV 122
Query: 122 KRHGQSRGPMAHG-SRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLP 179
KR HG S HR PGS+G KV KGKK+AG+MGN+RVTVQ+L + +V
Sbjct: 123 KRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERVTVQSLDVVRVDA 182
Query: 180 EKNVILVKGNVPGAKKSLIVVKSAIKA 206
E+N++LVKG VPGA S ++VK A+KA
Sbjct: 183 ERNLLLVKGAVPGATGSDLIVKPAVKA 209
sp|P51314|RK3_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >gi|2147058|pir||S73235 50S
ribosomal protein L3 - Porphyra purpurea chloroplast
>gi|1276780 (U38804) 50S ribosomal protein L3 [Porphyra
purpurea]
Length = 205
Score = 182 bits (456), Expect = 3e-45
Identities = 95/203 (46%), Positives = 132/203 (64%), Gaps = 3/203 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
MS GILG KVGMTQ F E G IPVTVI+ P + Q+KS+ TDGY A QVG+ + E
Sbjct: 1 MSVGILGTKVGMTQFFDETGLSIPVTVIQVGPCVITQIKSMSTDGYNAIQVGYKQVVEQK 60
Query: 61 TNKPAKGHAAKANTTPKRFVREF--KGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
+KP GH K+ + P +++RE+ + +E EV + + F G V+V+ S GKGF
Sbjct: 61 LSKPLLGHLKKSQSPPLKYLREYLVESIEDFEVSQVFSTNIFEVGQKVNVSSKSIGKGFS 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G KRH SRGPM+HGS+ HR+PGS+G +V GK +AG+MGNK+VT++NL I +
Sbjct: 121 GYQKRHHFSRGPMSHGSKNHRQPGSIGAGTTPGRVYPGKNMAGQMGNKKVTIKNLQIVSI 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVV 200
E +++L+KG VPG + +L+ V
Sbjct: 181 NIENDLLLLKGAVPGKQGALVKV 203
sp|P73320|RL3_SYNY3 50S RIBOSOMAL PROTEIN L3 >gi|1652427|dbj|BAA17349| (D90905) 50S
ribosomal protein L3 [Synechocystis sp.]
Length = 213
Score = 178 bits (446), Expect = 4e-44
Identities = 96/207 (46%), Positives = 133/207 (63%), Gaps = 4/207 (1%)
Query: 1 MSKGILGKKVGMTQIFT-ENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREV 59
MS GILG K+GMTQIF E+G IPVTV++A P V QVK+ +TDGY A QVGF ++E
Sbjct: 1 MSIGILGTKLGMTQIFDQESGISIPVTVVQAGPCPVTQVKTQDTDGYNAIQVGFLPVKEK 60
Query: 60 LTNKPAKGHAAKANTTPKRFVREFKGLEGAEV--GAEITVDTFAAGDVVDVTGTSKGKGF 117
+KP GH K+NT P R ++E++ + + G +T D F AGD+VDV G S G+GF
Sbjct: 61 ALSKPELGHLKKSNTDPMRHLKEYRLTDAPNLQPGDAVTADIFQAGDLVDVAGQSMGRGF 120
Query: 118 QGPIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQ 176
G KRH RG M HGS+ HR PGS G +V GK++AG+ G +VTV+ L + +
Sbjct: 121 AGYQKRHNFRRGNMTHGSKNHRLPGSTGAGTTPGRVYPGKRMAGQYGASQVTVRRLTVVR 180
Query: 177 VLPEKNVILVKGNVPGAKKSLIVVKSA 203
V E+N++++KG +PG +L+ + A
Sbjct: 181 VDAERNLLIIKGALPGKPGTLLNITPA 207
sp|P52860|RL3_THETH 50S RIBOSOMAL PROTEIN L3 >gi|1143612|emb|CAA86408| (Z46265)
ribosomal protein L3 [Thermus thermophilus]
Length = 206
Score = 176 bits (443), Expect = 9e-44
Identities = 99/206 (48%), Positives = 131/206 (63%), Gaps = 5/206 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG KVGMT+IF ++ +PVTVI A P V+Q ++ E DGY A Q+GF N
Sbjct: 2 KGILGVKVGMTRIFRDD-RAVPVTVILAGPCPVVQRRTPEKDGYTAVQLGFLPQNPKRVN 60
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
+P KGH AKA P R +RE + G +TV+ F G+ VDVTGTSKG+GF G +K
Sbjct: 61 RPLKGHFAKAGVEPVRILREIRDFNPE--GDTVTVEIFKPGERVDVTGTSKGRGFAGVMK 118
Query: 123 RHGQSRGPMAHGS-RYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPE 180
R + GP +HG+ + HR PGS+G +V KGKK+AG G +RVTV NL + V+PE
Sbjct: 119 RWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERVTVMNLEVVDVIPE 178
Query: 181 KNVILVKGNVPGAKKSLIVVKSAIKA 206
+N++LVKG VPG L++V+ KA
Sbjct: 179 ENLLLVKGAVPGPNGGLVIVRETKKA 204
sp|O52332|RL3_MYCGA 50S RIBOSOMAL PROTEIN L3 >gi|2766503 (AF036708) ribosomal protein
L3 [Mycoplasma gallisepticum]
Length = 236
Score = 176 bits (441), Expect = 2e-43
Identities = 95/209 (45%), Positives = 129/209 (61%), Gaps = 6/209 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGI G KVGMTQ+F ENG LIPVT++ PN V+ VK+ E DGY+A Q+GF+ E N
Sbjct: 2 KGIFGTKVGMTQVFEENGRLIPVTLVRVEPNQVVSVKTKEKDGYDAVQLGFNQTDEKNLN 61
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPI 121
KP GH KANT +++ E +G+ G +VG + V + F G VVDV +KG+GF G I
Sbjct: 62 KPELGHFKKANTNNYKYLEEVRGMVGYKVGDLLKVEELFQEGQVVDVQARTKGRGFTGAI 121
Query: 122 KRHGQSRGPMAHGSRY-HRRPGSM----GPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQ 176
KR G HG+ Y HR GS+ G A +V KGKK++G GN+ VT+QNL I
Sbjct: 122 KRWNFKIGSKGHGAGYPHRFQGSVQAGRGGSQAQRVMKGKKMSGHYGNELVTIQNLSIVG 181
Query: 177 VLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
LPE + +++ G +PGA S + + ++ K
Sbjct: 182 FLPEVSSVMISGAIPGANNSKVRITTSKK 210
sp|P15766|RK3_CYAPA CYANELLE 50S RIBOSOMAL PROTEIN L3 >gi|71073|pir||R5KT3 ribosomal
protein L3 - Cyanophora paradoxa cyanelle >gi|1016144
(U30821) ribosomal protein L3 [Cyanophora paradoxa]
Length = 209
Score = 171 bits (430), Expect = 3e-42
Identities = 90/208 (43%), Positives = 130/208 (62%), Gaps = 3/208 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
MS GILG K+GMTQIF E G IPVT+I+A P + Q+K+ TDGY A QVG+ +E
Sbjct: 1 MSIGILGTKLGMTQIFDEAGNAIPVTIIQAGPCPITQIKTTATDGYNAIQVGYRETKEKN 60
Query: 61 TNKPAKGHAAKANTTPKRFVREF--KGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
K GH K N + R ++EF + + EV ITV+ F D+V++ G S G+GF
Sbjct: 61 LTKAQLGHLQKTNNSALRVLQEFSIESSDSIEVEKPITVELFNDNDIVNIQGYSIGRGFS 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G KRH +RGPM+HGS+ HR PGS+G + +V G ++AGR G+ ++T++ L I +V
Sbjct: 121 GYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKV 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVKSAIK 205
E+++++VKG+VPG L+ + K
Sbjct: 181 DSERSLLIVKGSVPGKPGGLLTITQVKK 208
emb|CAA35536| (X17498) L3 ribosomal protein (AA 1-209) [Cyanophora paradoxa]
Length = 209
Score = 170 bits (426), Expect = 9e-42
Identities = 89/208 (42%), Positives = 130/208 (61%), Gaps = 3/208 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
+S GILG K+GMTQIF E G IPVT+I+A P + Q+K+ TDGY A QVG+ +E
Sbjct: 1 VSIGILGTKLGMTQIFDEAGNAIPVTIIQAGPCPITQIKTTATDGYNAIQVGYRETKEKN 60
Query: 61 TNKPAKGHAAKANTTPKRFVREF--KGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
K GH K N + R ++EF + + EV ITV+ F D+V++ G S G+GF
Sbjct: 61 LTKAQLGHLQKTNNSALRVLQEFSIESSDSIEVEKPITVELFNDNDIVNIQGYSIGRGFS 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G KRH +RGPM+HGS+ HR PGS+G + +V G ++AGR G+ ++T++ L I +V
Sbjct: 121 GYQKRHNFARGPMSHGSKNHRLPGSIGAGSTPGRVYPGTRMAGRKGDSKITIRGLKIVKV 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVKSAIK 205
E+++++VKG+VPG L+ + K
Sbjct: 181 DSERSLLIVKGSVPGKPGGLLTITQVKK 208
gb|AAD22128.1|AC006224_10 (AC006224) 50S ribosomal protein L3 [Arabidopsis thaliana]
Length = 271
Score = 169 bits (425), Expect = 1e-41
Identities = 90/205 (43%), Positives = 127/205 (61%), Gaps = 5/205 (2%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATP-NTVLQVKSVETDGYEATQVGFDTLREVLTN 62
G++G K+GM F E+G ++PVTV+ N V Q+K++ TDGY+A Q+G+ +R+
Sbjct: 57 GVMGSKLGMMSFFEEDGTVVPVTVVGFREGNIVTQIKTLATDGYDAVQIGYRRVRDKKLT 116
Query: 63 KPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITVDT-FAAGDVVDVTGTSKGKGFQG 119
KP GH KA T P R ++EF+ +EG E ++ D F GD+VDV GT+ GKGFQG
Sbjct: 117 KPETGHLQKAGTIPMRHLQEFRLTNIEGFEPNQKLVFDEIFKEGDLVDVAGTTIGKGFQG 176
Query: 120 PIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
IKRH RG M HGS+ HR GS+G +V KGKK+ GRMG R ++ L I +V
Sbjct: 177 GIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTRTKIRKLKIVKVD 236
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSA 203
E NV+++KG +PG +L+ + A
Sbjct: 237 KELNVVMIKGALPGKPGNLLRITPA 261
sp|P44344|RL3_HAEIN 50S RIBOSOMAL PROTEIN L3 >gi|1075249|pir||E64092 ribosomal protein
L3 (rpL3) homolog - Haemophilus influenzae (strain Rd
KW20) >gi|1573787|gb|AAC22436.1| (U32761) ribosomal
protein L3 (rpL3) [Haemophilus influenzae Rd]
Length = 208
Score = 169 bits (423), Expect = 2e-41
Identities = 101/207 (48%), Positives = 130/207 (62%), Gaps = 5/207 (2%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++G+KVGMT+IF E+G +PVTVIE N V QVK++E DGY A QV + + K
Sbjct: 3 GLVGRKVGMTRIFNEDGVSVPVTVIEIEANRVTQVKTLENDGYTAVQVTTGSKKANRVTK 62
Query: 64 PAKGHAAKANTTPKRFVREFKGLEGAE--VGAEITVDTFAAGDVVDVTGTSKGKGFQGPI 121
P GH KA R + EF+ EG E +G EI VD FA VDVTGTSKGKGFQG +
Sbjct: 63 PEAGHFVKAGVEAGRGLWEFR-TEGEEFTLGQEINVDIFADVKKVDVTGTSKGKGFQGGV 121
Query: 122 KRHGQSRGPMAHG-SRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLP 179
KR HG S HR GS+G +V KGKK+AG +G +RVTVQ+L + +V
Sbjct: 122 KRWNFRTQDATHGNSLSHRVLGSIGQNQTPGRVFKGKKMAGHLGAERVTVQSLEVVRVDA 181
Query: 180 EKNVILVKGNVPGAKKSLIVVKSAIKA 206
E+ ++LVKG+VPGA ++VK A+KA
Sbjct: 182 ERKLLLVKGSVPGAINGDVIVKPAVKA 208
sp|O46894|RK3_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >gi|3603042|gb|AAC35703|
(AF041468) ribosomal protein L3 [Guillardia theta]
Length = 204
Score = 167 bits (418), Expect = 8e-41
Identities = 84/204 (41%), Positives = 123/204 (60%), Gaps = 3/204 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M G+LG K+GMTQIF +NG IPVT+++ P V +KS D Y A Q+G+ +
Sbjct: 1 MKIGLLGTKLGMTQIFDDNGSAIPVTILKVGPCYVTNLKSDTKDNYNAIQIGYQQVDAKK 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
KP GH N P + ++E+K + ++ V F G +V V+G S GKGF
Sbjct: 61 LTKPQLGHLQVNNLPPLKHLKEYKVDATHTFTIAQQLDVSIFELGQIVSVSGVSIGKGFA 120
Query: 119 GPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLVIAQV 177
G +KRH +RGPM HGS+ HR PGS+G + KV KGKK+AGR+G +VT +NL + +
Sbjct: 121 GTVKRHNFTRGPMTHGSKNHREPGSIGQGSTPAKVHKGKKMAGRLGGHQVTTKNLTVVHL 180
Query: 178 LPEKNVILVKGNVPGAKKSLIVVK 201
+ NV+++KG VPG + +++ +K
Sbjct: 181 DKDNNVLVLKGCVPGKRGNILSIK 204
sp|P49569|RK3_ODOSI CHLOROPLAST 50S RIBOSOMAL PROTEIN L3 >gi|1185166|emb|CAA91649|
(Z67753) 50S ribosomal protein L3 [Odontella sinensis]
Length = 196
Score = 165 bits (414), Expect = 2e-40
Identities = 82/192 (42%), Positives = 121/192 (62%), Gaps = 3/192 (1%)
Query: 12 MTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAKGHAAK 71
MTQIF E+G +IPVT+++ P + QVK+ DGY A Q+G+ T+ +P GH K
Sbjct: 1 MTQIFDESGNIIPVTILKVGPCVITQVKTDLNDGYNAIQIGYGTVSNKSLTQPELGHLQK 60
Query: 72 ANTTPKRFVREFK--GLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRG 129
+N P ++++EF+ E +VG + V++ + G +DVTG S GKGF G KRH +RG
Sbjct: 61 SNIQPLKYLKEFRVNNPEEFKVGQVVNVESLSTGQFIDVTGKSSGKGFSGLQKRHNFTRG 120
Query: 130 PMAHGSRYHRRPGSMG-PVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNVILVKG 188
PM HGS+ HR PGS+G +V GKK+AG++GNK + L I QV +N+++VKG
Sbjct: 121 PMTHGSKNHRAPGSIGMGTTPGRVLPGKKMAGQLGNKVTKTKKLKIIQVNGNENILVVKG 180
Query: 189 NVPGAKKSLIVV 200
+VPG +L+ +
Sbjct: 181 SVPGKPGNLVTI 192
sp|P47397|RL3_MYCGE 50S RIBOSOMAL PROTEIN L3 >gi|1361810|pir||G64216 ribosomal protein
L3 - Mycoplasma genitalium (SGC3) >gi|3844745 (U39696)
ribosomal protein L3 (rpL3) [Mycoplasma genitalium]
Length = 257
Score = 158 bits (396), Expect = 3e-38
Identities = 83/209 (39%), Positives = 128/209 (60%), Gaps = 6/209 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
+GI G KVGM+QIFTE E +P+T++ N V +K++ D Y AT + F T+ E N
Sbjct: 4 RGIFGVKVGMSQIFTEQNECLPITIVYCEANQVAGIKTIAKDNYNATLLSFQTVDEKQLN 63
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEIT-VDTFAAGDVVDVTGTSKGKGFQGPI 121
KP +G +K P +++RE + ++G E+G +IT + F G+ VDVT +KG+GF G I
Sbjct: 64 KPKQGFFSKLKLEPHKYLREIRKMQGFELGKKITPQELFKIGEYVDVTSLTKGRGFTGAI 123
Query: 122 KRHGQSRGPMAHGSRY-HRRPGSM----GPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQ 176
KR GP+ HG+ Y HR GS+ G +A +V KGKK++G G+++VT+QNL I
Sbjct: 124 KRWNFKIGPLGHGAGYPHRFQGSVQAGRGGSSAQRVFKGKKMSGHYGHEQVTIQNLFIVG 183
Query: 177 VLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
++LV G + G + ++++K+A K
Sbjct: 184 FDEINKLVLVSGAIAGPEGGIVLIKTAKK 212
dbj|BAA31509| (AB010877) chloroplast ribosomal protein L3 [Nicotiana tabacum]
Length = 259
Score = 157 bits (394), Expect = 5e-38
Identities = 84/205 (40%), Positives = 126/205 (60%), Gaps = 5/205 (2%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATP-NTVLQVKSVETDGYEATQVGFDTLREVLTN 62
G++ K+GM F E+G ++PVTV+ N V Q+K+ TDGY A QVG+ +R+
Sbjct: 45 GVMATKLGMMSFFEESGTVVPVTVVGFREGNIVTQIKTEATDGYNAVQVGYRRVRDRKLT 104
Query: 63 KPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQG 119
KP GH K+ P R ++EF+ ++G EV ++ + F GD+VDV+GT+ GKGFQG
Sbjct: 105 KPEMGHLEKSGIIPLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQG 164
Query: 120 PIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
IKRH RG M HGS+ HR+ GS+G +V KGKK+ GRMG + ++ L I ++
Sbjct: 165 GIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKID 224
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSA 203
+ N+I++KG +PG +L+ + A
Sbjct: 225 DQLNIIMIKGALPGKPGNLLRIAPA 249
sp|P75580|RL3_MYCPN 50S RIBOSOMAL PROTEIN L3 >gi|2146608|pir||S73992 ribosomal protein
L3 - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674371 (AE000061) Mycoplasma pneumoniae, ribosomal
protein L3; similar to Swiss-Prot Accession Number
P10134, from M. capricolum [Mycoplasma pneumoniae]
Length = 287
Score = 157 bits (393), Expect = 7e-38
Identities = 86/209 (41%), Positives = 126/209 (60%), Gaps = 6/209 (2%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
+GI G KVGM+Q+FT N E +P+TVI PN V VK+ D Y AT + FDT+ N
Sbjct: 4 RGIFGVKVGMSQVFTTNNERLPITVIYCEPNQVAGVKTEAKDKYSATLLSFDTVENKKLN 63
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEIT-VDTFAAGDVVDVTGTSKGKGFQGPI 121
KP +G K N P + ++E + + G E+G +IT + F G+ VDV+ SKG+GF G I
Sbjct: 64 KPQQGFFEKNNLKPTKHLQEIRNMTGFEMGQQITPQNLFQVGEYVDVSAISKGRGFTGAI 123
Query: 122 KRHGQSRGPMAHGSRY-HRRPGSM----GPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQ 176
KR GP+ HG+ Y HR GS+ G +A +V KGKK++G G+++VTVQNL I
Sbjct: 124 KRWNFKIGPLGHGAGYPHRFQGSVQAGRGGASAQRVFKGKKMSGHYGHEKVTVQNLRIVG 183
Query: 177 VLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
++LV G + G + ++++++A K
Sbjct: 184 FDEANMLVLVSGAIAGPEGGVVLIRTAKK 212
sp|O66431|RL3_AQUAE 50S RIBOSOMAL PROTEIN L3 >gi|2982767 (AE000669) ribosomal protein
L03 [Aquifex aeolicus]
Length = 241
Score = 156 bits (390), Expect = 1e-37
Identities = 92/208 (44%), Positives = 125/208 (59%), Gaps = 5/208 (2%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVET-DGYEATQVGFDTLREV 59
M G++G+KVGMT++ ++G IPVTVI+ N V+QVKS T DGY A Q+G +E
Sbjct: 1 MPLGLIGEKVGMTRVLLKDGTAIPVTVIKFPVNYVVQVKSQNTKDGYNALQIGAYEAKEK 60
Query: 60 LTNKPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKG 116
KP GH K R + EF+ E + G ++ V D F GD+VDV G SKG+G
Sbjct: 61 HLTKPLIGHFKKHGVPLLRRLWEFRVDNPEEFQSGQQLKVEDVFKPGDLVDVWGISKGRG 120
Query: 117 FQGPIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIA 175
F G +KR + P +HG RYHR G++G +V KGK++ G G K V VQ L +
Sbjct: 121 FAGAMKRWDFAGFPKSHGHRYHRAVGAIGQRTDPGRVWKGKRMPGHYGAKPVRVQGLFVV 180
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSA 203
VLPE+N ILVKG+VPG K ++VV+ +
Sbjct: 181 DVLPEENAILVKGSVPGHNKGIVVVEQS 208
gi|4165865 (AF040100) ribosomal protein L3 [Aquifex pyrophilus]
Length = 244
Score = 152 bits (379), Expect = 3e-36
Identities = 94/211 (44%), Positives = 126/211 (59%), Gaps = 6/211 (2%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVET-DGYEATQVGFDTLREV 59
M G++G+KVGMT++ ++G IPVTVI+ N V+QVKSV T DGY A QVG +E
Sbjct: 1 MPLGLIGEKVGMTRVLLKDGTAIPVTVIKFPVNYVVQVKSVNTKDGYNALQVGAYEAKEK 60
Query: 60 LTNKPAKGHAAKANTTPKRFVREFK--GLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKG 116
KP GH K R + EF+ E + G E+ V D F GD+VDV G SKG+G
Sbjct: 61 HLTKPLIGHFKKHGVPLLRRLWEFRVDNPEEFKSGQELRVQDVFKPGDLVDVWGISKGRG 120
Query: 117 FQGPIKRHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIA 175
F G +KR + P +HG RYHR G++G +V KGKK+ G G K V VQ L +
Sbjct: 121 FAGVMKRWDFAGFPRSHGHRYHRAVGAIGQRTDPGRVWKGKKMPGHYGAKPVRVQGLFVV 180
Query: 176 QVLPEKNVILVKGN-VPGAKKSLIVVKSAIK 205
LPE+N ILVKG+ +PG K ++V+ A++
Sbjct: 181 ASLPEENAILVKGSALPGHNKGIVVLLPAVE 211
gb|AAD18786| (AE001647) L3 Ribosomal Protein [Chlamydia pneumoniae]
Length = 225
Score = 148 bits (369), Expect = 4e-35
Identities = 83/208 (39%), Positives = 120/208 (56%), Gaps = 11/208 (5%)
Query: 5 ILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL---- 60
++GKK GM IF ++G L+ +VI PN V Q+K+ E+DGY + Q+G + +
Sbjct: 13 VMGKKEGMIHIFDKDGSLVACSVIRVEPNVVTQIKTKESDGYFSLQIGAEEMNAPAHTIT 72
Query: 61 --TNKPAKGHAAKANTTPKRFVREFKG----LEGAEVGAEITVDTFAAGDVVDVTGTSKG 114
+KP GH KA RF++E +G L G +G ++ F VDV G SKG
Sbjct: 73 KRVSKPKLGHLRKAGGRVFRFLKEVRGSEEALNGVSLGDAFGLEVFEDVSSVDVRGISKG 132
Query: 115 KGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLV 173
KGFQG +K+ G GP +HGS +HR GS+G + + G K MG + VTV+NL
Sbjct: 133 KGFQGVMKKFGFRGGPGSHGSGFHRHAGSIGMRSTPGRCFPGSKRPSHMGAENVTVKNLE 192
Query: 174 IAQVLPEKNVILVKGNVPGAKKSLIVVK 201
+ +V EK V+LVKG +PGA+ S+++VK
Sbjct: 193 VIKVDLEKKVLLVKGAIPGARGSIVIVK 220
sp|O83219|RL3_TREPA 50S RIBOSOMAL PROTEIN L3 >gi|3322453 (AE001202) ribosomal protein
L3 (rplC) [Treponema pallidum]
Length = 208
Score = 146 bits (364), Expect = 2e-34
Identities = 84/204 (41%), Positives = 120/204 (58%), Gaps = 3/204 (1%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++G+KVGMTQIF G + PVTVI N V+ +K VE GY A +G +++ +K
Sbjct: 3 GLIGQKVGMTQIFDARGCVTPVTVIRVEHNVVVGLKDVERFGYSAVILGTGCMKKSRISK 62
Query: 64 PAKGHAAKANTTPKRFVREFKGLE-GAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIK 122
P G A+ P R +REF+G VG + V + +DV SKGKGFQG +K
Sbjct: 63 PYAGQFAE-RIPPVRVMREFRGFTLDVSVGQVLDVRVLESVRYLDVCALSKGKGFQGVVK 121
Query: 123 RHGQSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEK 181
R G S G +HGS++HR GS G + + K K+ GRMG +RVTVQNL I ++
Sbjct: 122 RWGFSGGRSSHGSKFHREAGSTGQCTSPGRTFKNVKMPGRMGAERVTVQNLRIERIDVGL 181
Query: 182 NVILVKGNVPGAKKSLIVVKSAIK 205
V++V+G VPG K+ + +++A+K
Sbjct: 182 GVVMVRGAVPGRNKATVFLRTAVK 205
sp|P48952|RL3_RICPR 50S RIBOSOMAL PROTEIN L3 >gi|3861199|emb|CAA15099| (AJ235272) 50S
RIBOSOMAL PROTEIN L3 (rplC) [Rickettsia prowazekii]
Length = 216
Score = 135 bits (336), Expect = 3e-31
Identities = 81/209 (38%), Positives = 117/209 (55%), Gaps = 4/209 (1%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M GI+ +KVGMT +F + GE I +T+++ V+ K++ GY A +G +
Sbjct: 1 MRTGIIAQKVGMTSVFNDKGERISLTLVKVDDCQVVGHKTLAKHGYNALVIGVKDQKISK 60
Query: 61 TNKPAKGHAAKANTTPKRFVREFKGLEG--AEVGAEITVDTFAAGDVVDVTGTSKGKGFQ 118
KP K A A PK ++EF+ E ++ + + VD F G VD+T T+ GKGF
Sbjct: 61 VTKPMKQVFANAKIAPKTKLKEFRISEDNFIDIASILEVDHFRVGQFVDITATTIGKGFA 120
Query: 119 GPIKRHGQSRGPMAHG-SRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIAQ 176
G +KRH +HG S HR GS G KV KGKK+AG MG +VT+QNL I
Sbjct: 121 GSMKRHNFRGLEASHGVSISHRSHGSTGQRQDPGKVFKGKKMAGHMGCNKVTIQNLKIFA 180
Query: 177 VLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
V + +I+++G++PG K S ++VK AIK
Sbjct: 181 VDTNRKLIMIQGSIPGHKNSYLLVKDAIK 209
gb|AAC68129.1| (AE001323) L3 Ribosomal Protein [Chlamydia trachomatis]
Length = 221
Score = 135 bits (336), Expect = 3e-31
Identities = 78/208 (37%), Positives = 116/208 (55%), Gaps = 11/208 (5%)
Query: 5 ILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLR------E 58
++GKK GM +F +NG L+ +VI N V Q+K+ +DGY A Q+G D ++ E
Sbjct: 7 LIGKKEGMMHVFDKNGNLVACSVISVDANVVAQLKTASSDGYNAVQMGADVVQAPEKTIE 66
Query: 59 VLTNKPAKGHAAKANTTPKRFVREF----KGLEGAEVGAEITVDTFAAGDVVDVTGTSKG 114
+K GH K+ R ++E + ++ +G E ++ F VD+ G SKG
Sbjct: 67 KRFSKALLGHFKKSGGRVCRVLKEVVVSEEAVQSVSLGDEFGLEIFDGVSNVDICGISKG 126
Query: 115 KGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAA-NKVPKGKKLAGRMGNKRVTVQNLV 173
KGFQG +K+ G GP +HGS +HR GS G + + G K MG RVTV+NL
Sbjct: 127 KGFQGVMKKFGFRGGPKSHGSGFHRHAGSTGMRSTPGRCFPGSKRPSHMGCDRVTVKNLE 186
Query: 174 IAQVLPEKNVILVKGNVPGAKKSLIVVK 201
+ +V ++ V+LVKG +PG K S++VVK
Sbjct: 187 VVKVDLDRKVMLVKGAIPGFKGSVVVVK 214
sp|P72233|RL3_PLARO 50S RIBOSOMAL PROTEIN L3 >gi|1679861|emb|CAA67347| (X98830)
ribosomal protein L3 [Planobispora rosea]
Length = 140
Score = 124 bits (309), Expect = 5e-28
Identities = 62/135 (45%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KG+LGKK+GMTQ+F + ++PVTV+EA P V +V++ E DGY A Q+GF + N
Sbjct: 6 KGVLGKKLGMTQVFDADNRMVPVTVVEAGPCVVTRVRTPEKDGYSAVQLGFGQIDPRKVN 65
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAE--VGAEITVDTFAAGDVVDVTGTSKGKGFQGP 120
KP + K TP+R+ E + + +E +G E+ DTF AG VDVTG SKGKGF G
Sbjct: 66 KPLGDYLRKHEITPRRYFTEIRTDDASEYTIGQEVLADTFEAGQFVDVTGKSKGKGFAGV 125
Query: 121 IKRHGQSRGPMAHGS 135
+KRHG +HG+
Sbjct: 126 MKRHGFGGLGASHGT 140
ref|NP_011736.1|MRPL9| Mitochondrial ribosomal protein MRPL9 (YmL9) (E. coli L3) (human
MRL3); Mrpl9p >gi|1710598|sp|P31334|RM09_YEAST 60S
RIBOSOMAL PROTEIN L9, MITOCHONDRIAL PRECURSOR (YML9)
>gi|279645|pir||R5BYL3 ribosomal protein L3 precursor,
mitochondrial - yeast (Saccharomyces cerevisiae)
>gi|886912|emb|CAA61168| (X87941) ORF 269 [Saccharomyces
cerevisiae] >gi|1323396|emb|CAA97248| (Z73004) ORF
YGR220c [Saccharomyces cerevisiae]
Length = 269
Score = 116 bits (288), Expect = 1e-25
Identities = 78/210 (37%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
Query: 4 GILGKKVGMTQIFTEN-GELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
G++ +K GM F ++ GE T++E V+ ++ E +GY A QVG+ + +
Sbjct: 60 GLITRKKGMMPYFDKSTGERSAATILEVNNVEVIMHRTSEVNGYFACQVGYGSRHLSKVS 119
Query: 63 KPAKGHAAKANTTPKRFVREF-----KGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGF 117
+ GH A PK V EF KGL G + F G VDV SKGKGF
Sbjct: 120 RQMLGHFASKVVNPKEHVAEFRVKDEKGL--IPPGTLLKPSFFKEGQYVDVRSVSKGKGF 177
Query: 118 QGPIKRHGQSRGPMAHG-SRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIA 175
G +KR+G +HG S HR GS G +V G+K+ G MGN+ VT+QN+ +
Sbjct: 178 TGVMKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGRKMPGHMGNEHVTIQNVKVL 237
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+V E NVI VKG+V G K S + ++ AIK
Sbjct: 238 KVDDENNVIWVKGSVAGPKNSFVKIQDAIK 267
emb|CAA46148| (X65014) YmL9 mitochondrial ribosomal protein [Saccharomyces
cerevisiae]
Length = 269
Score = 115 bits (285), Expect = 3e-25
Identities = 77/210 (36%), Positives = 109/210 (51%), Gaps = 10/210 (4%)
Query: 4 GILGKKVGMTQIFTEN-GELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
G++ +K GM F ++ GE T++E V+ ++ E +GY A QVG+ + +
Sbjct: 60 GLITRKKGMMPYFDKSTGERSAATILEVNNVEVIMHRTSEVNGYFACQVGYGSRHLSKVS 119
Query: 63 KPAKGHAAKANTTPKRFVREF-----KGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGF 117
+ GH A PK V +F KGL G + F G VDV SKGKGF
Sbjct: 120 RQMLGHFASKVVNPKEHVAQFRVKDEKGL--IPPGTLLKPSFFKEGQYVDVRSVSKGKGF 177
Query: 118 QGPIKRHGQSRGPMAHG-SRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIA 175
G +KR+G +HG S HR GS G +V G+K+ G MGN+ VT+QN+ +
Sbjct: 178 TGVMKRYGFKGLRASHGTSIMHRHGGSYGQNQDPGRVLPGRKMPGHMGNEHVTIQNVKVL 237
Query: 176 QVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+V E NVI VKG+V G K S + ++ AIK
Sbjct: 238 KVDDENNVIWVKGSVAGPKNSFVKIQDAIK 267
gi|406362 (U02153) unknown [Mycoplasma genitalium]
Length = 154
Score = 113 bits (280), Expect = 1e-24
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 23 IPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAKGHAAKANTTPKRFVRE 82
+P+T++ N V +K++ D Y AT + F T+ E NKP +G +K P +++RE
Sbjct: 2 LPITIVYCEANQVAGIKTIAKDNYNATLLSFQTVDEKQLNKPKQGFFSKLKLEPHKYLRE 61
Query: 83 FKGLEGAEVGAEIT-VDTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRY-HRR 140
+ ++G E+G +IT + F G+ VDVT +KG+GF G IKR GP+ HG+ Y HR
Sbjct: 62 IRKMQGFELGKKITPQELFKIGEYVDVTSLTKGRGFTGAIKRWNFKIGPLGHGAGYPHRF 121
Query: 141 PGSM----GPVAANKVPKGKKLAGRMGNKRVTV 169
GS+ G +A +V KGKK++G G+++VT+
Sbjct: 122 QGSVQAGRGGSSAQRVFKGKKMSGHYGHEQVTI 154
sp|P11252|RL3_YERPS 50S RIBOSOMAL PROTEIN L3 >gi|79204|pir||S04140 ribosomal protein L3
- Yersinia pseudotuberculosis (fragment)
>gi|48645|emb|CAA32542| (X14363) ribosomal protein L3
[Yersinia pseudotuberculosis]
Length = 129
Score = 111 bits (274), Expect = 6e-24
Identities = 67/129 (51%), Positives = 84/129 (64%), Gaps = 4/129 (3%)
Query: 82 EFKGLEGAE--VGAEITVDTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHG-SRYH 138
EF+ EG E G EI+V+ FA VDVTGTSKGKGF G +KR HG S H
Sbjct: 1 EFRLPEGQEFTAGQEISVEIFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSH 60
Query: 139 RRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNVILVKGNVPGAKKSL 197
R PGS+G KV KGKK+AG MG++RVTVQ+L + +V E+N++LVKG VPGA
Sbjct: 61 RVPGSIGQNQTPGKVFKGKKMAGHMGDERVTVQSLDVVRVDAERNLLLVKGAVPGATGGN 120
Query: 198 IVVKSAIKA 206
++VK A+KA
Sbjct: 121 LIVKPAVKA 129
gb|AAF12907.1|AF022186_29 (AF022186) unknown; 50S ribosomal protein L3 [Cyanidium caldarium]
Length = 215
Score = 109 bits (271), Expect = 1e-23
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 2/196 (1%)
Query: 7 GKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAK 66
G K+GMTQI G L+PVT++ V+ + + + + + NKP
Sbjct: 10 GVKLGMTQILDNFGNLVPVTIVSQPKPCVITRVTTSLNSQQKLIIQIGCYSDFRANKPTI 69
Query: 67 GHAAKANTTPKRFVREFKGLEGAEVGAEITVDTFAAGD-VVDVTGTSKGKGFQGPIKRHG 125
G+ K + R++ EF+ + E ++D +V V+ + GKGF G K+H
Sbjct: 70 GYFKKQSVPNLRYLHEFQTYKNNEYQVGKSLDLKELDQQLVQVSAYTIGKGFAGYQKKHK 129
Query: 126 QSRGPMAHGSRYHRRPGSMGP-VAANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNVI 184
SRG M+HGS+ HRRPGS+G +V G K+AGR+G R +++NL++ +V +
Sbjct: 130 FSRGAMSHGSKSHRRPGSIGAGTTPGRVFPGVKMAGRLGFSRRSIKNLLVLKVDLTNKLF 189
Query: 185 LVKGNVPGAKKSLIVV 200
L+KG+VPG +L++V
Sbjct: 190 LLKGSVPGKYGNLLLV 205
sp|P94799|RL3_ACTAC 50S RIBOSOMAL PROTEIN L3 >gi|1841322|dbj|BAA10947| (D64071)
ribosomal protein L3 [Actinobacillus
actinomycetemcomitans]
Length = 121
Score = 106 bits (263), Expect = 1e-22
Identities = 62/118 (52%), Positives = 78/118 (65%), Gaps = 2/118 (1%)
Query: 91 VGAEITVDTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHG-SRYHRRPGSMGP-VA 148
+G EI VD FA VDVTGTSKGKGFQG +KR HG S HR GS+G
Sbjct: 4 LGQEINVDIFADVKKVDVTGTSKGKGFQGGVKRWNFRTQDATHGNSLSHRVLGSIGQNQT 63
Query: 149 ANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNVILVKGNVPGAKKSLIVVKSAIKA 206
+V KGKK+AG +GN+RVTVQ+L + +V E+ ++LVKG VPGA S ++VK A+KA
Sbjct: 64 PGRVFKGKKMAGHLGNERVTVQSLEVVRVDAERKLLLVKGAVPGATGSDVIVKPAVKA 121
ref|NP_009139.1|| ribosomal protein, mitochondrial, L3
>gi|133116|sp|P09001|RM03_HUMAN MITOCHONDRIAL 60S
RIBOSOMAL PROTEIN L3 >gi|71070|pir||R5HUL3 ribosomal
protein L3 precursor, mitochondrial - human
>gi|34754|emb|CAA29639| (X06323) put. ribosomal protein
L3 (AA 1 - 348) [Homo sapiens]
Length = 348
Score = 96.3 bits (236), Expect = 2e-19
Identities = 67/205 (32%), Positives = 104/205 (50%), Gaps = 5/205 (2%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVET-DGYEAT-QVGFDTLREVLT 61
G++ K+GM ++T++G+ VT+++ VL+ S E +G AT VG T+
Sbjct: 98 GLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRK 157
Query: 62 NKPAKGHAAKANTTPKRFVREFKGLEGAEV--GAEITVDTFAAGDVVDVTGTSKGKGFQG 119
+ PK+ V+ F + A + G + F G VDVT + GKGFQG
Sbjct: 158 ATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQG 217
Query: 120 PIKRHGQSRGPMAHG-SRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
+KR G P HG ++ HRRPG++ +V G K+ G+MGN T L + ++
Sbjct: 218 VMKRWGFKGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRIN 277
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSA 203
+ N+I V G+VPG K L+ VK +
Sbjct: 278 TKHNIIYVNGSVPGHKNCLVKVKDS 302
dbj|BAA11007| (D64127) ribosomal protein L3 [Bacillus subtilis]
Length = 60
Score = 92.4 bits (226), Expect = 3e-18
Identities = 43/60 (71%), Positives = 50/60 (82%)
Query: 1 MSKGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVL 60
M+KGILG+K+GMTQ+F ENG+LIPVTVIEA PN VLQ K+ E DGYEA Q+GFD RE L
Sbjct: 1 MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKL 60
sp|P18665|RM03_RAT MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L3 >gi|71071|pir||R5RTL3
ribosomal protein L3 precursor, mitochondrial - rat
Length = 347
Score = 87.0 bits (212), Expect = 1e-16
Identities = 64/205 (31%), Positives = 103/205 (50%), Gaps = 6/205 (2%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVET-DGYEAT-QVGFDTLREVLT 61
G++ K+GM ++T++G+ VT+++ VL+ E +G AT VG T +
Sbjct: 98 GLIALKLGMMPLWTKDGQKHAVTLLQVQDCHVLKYTPKEDHNGKTATLTVGGKTGSRLYK 157
Query: 62 NKPAKGHAAKANTTPKRFVREFKGLEGAEV--GAEITVDTFAAGDVVDVTGTSKGKGFQG 119
PK+ + F + A + G + F G VDVT + GKGFQG
Sbjct: 158 ANSILEFYRDLGLPPKQTTKIFHVTDNAVIKQGTPLYAAHFRPGQYVDVTAKTIGKGFQG 217
Query: 120 PIKRHGQSRGPMAHG-SRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQVL 178
+KR G P +HG ++ HRRPG++ +V G K+ G+MGN+ TV L + +V
Sbjct: 218 VMKRWGFKGQPASHGQTKTHRRPGAISTGDIARVWPGTKMPGKMGNQNRTVYGLKVWRVN 277
Query: 179 PEKNVILVKGNVPGAKKSLIVVKSA 203
+ N+I V G+V G + L+ +K +
Sbjct: 278 TKHNIIYVNGSV-GHRNCLVKIKDS 301
pir||S31154 ribosomal protein L3 - Mycobacterium leprae (fragment)
>gi|581341|emb|CAA78677| (Z14314) ribosomal protein L3
[Mycobacterium leprae]
Length = 100
Score = 83.9 bits (204), Expect = 1e-15
Identities = 39/95 (41%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Query: 3 KGILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTN 62
KGILG K+GMTQ+F EN ++PVTV++A PN V +++++E DGY A Q+ + + N
Sbjct: 5 KGILGTKLGMTQVFDENNRVVPVTVVKAGPNVVTRIRTLERDGYSAVQLAYGEISPRKVN 64
Query: 63 KPAKGHAAKANTTPKRFVREFKGLEGAEVGAEITV 97
KP G A P+R++ E + L+ + AE V
Sbjct: 65 KPVTGQYNSAGVNPRRYLAELR-LDHPDAAAEYEV 98
emb|CAB73693.1| (AL139079) 50S ribosomal protein L3 [Campylobacter jejuni]
Length = 191
Score = 82.3 bits (200), Expect = 3e-15
Identities = 61/187 (32%), Positives = 98/187 (51%), Gaps = 15/187 (8%)
Query: 8 KKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAKG 67
+K+GM++ T I VT++ V+ K E +G +A V + + +NK G
Sbjct: 6 EKIGMSRTITNPS--IAVTLLR-----VVNAKVCEVEGGKAL-VAYP--KGKASNKCVAG 55
Query: 68 HAAKANTTPKRFVREFKGLEGAEVGA-EITVDTFAAGDVVDVTGTSKGKGFQGPIKRHGQ 126
K N + + F LE A A ++ ++ V+ +KG+G+ G +KRH
Sbjct: 56 QQKKYNLSAE--YNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGRGYSGVMKRHNF 113
Query: 127 SRGPMAHGSRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNVIL 185
+ GP +HGSR+HRR GS+G +V G K+AG GN +VT++N V++ E +++
Sbjct: 114 AGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTIKNEVVSYD-AENKILV 172
Query: 186 VKGNVPG 192
VKG VPG
Sbjct: 173 VKGAVPG 179
sp|P49404|RM03_CAEEL PUTATIVE MITOCHONDRIAL 60S RIBOSOMAL PROTEIN L3 >gi|532807 (U13875)
similar to ribosomal protein L3 [Caenorhabditis elegans]
Length = 379
Score = 80.4 bits (195), Expect = 1e-14
Identities = 66/221 (29%), Positives = 101/221 (44%), Gaps = 20/221 (9%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVG----FDTLREV 59
G++ +K+GM +T G I TV+E N V+ + S E Y+++ VG F+ +
Sbjct: 80 GLVVRKIGMLPQWTNEGNRILCTVLEVDENHVVSITSPEA-WYKSSAVGKRKAFNRHGPM 138
Query: 60 LTNKPAKGHAAKANTT---PKRFVRE----------FKGLEGA--EVGAEITVDTFAAGD 104
G+ T ++FVR F E A G + F G
Sbjct: 139 WRVTVGAGNDDPTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDALPSAGQPLDARHFGVGQ 198
Query: 105 VVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGN 164
V TG + GFQG + R G P ++ HRR GS+G V ++ GK++ G MG
Sbjct: 199 YVTATGKTIDWGFQGGMHRWGMRGQPTRRTTKSHRRIGSVGSVGDARIWPGKRMPGHMGY 258
Query: 165 KRVTVQNLVIAQVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+ TV L I ++ +K VI VKG+VPG I++K ++
Sbjct: 259 EWRTVSGLEIVRINVDKQVIYVKGSVPGDIGETILLKDCLQ 299
gi|4155816 (AE001547) 50S RIBOSOMAL PROTEIN L3 [Helicobacter pylori J99]
Length = 191
Score = 78.8 bits (191), Expect = 3e-14
Identities = 62/189 (32%), Positives = 99/189 (51%), Gaps = 14/189 (7%)
Query: 6 LGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPA 65
L +K+GM++ N PVT+++ VLQ K + + +A V + ++ NK
Sbjct: 4 LVQKIGMSRTIDANST--PVTLLK-----VLQAKVCQLENGKAL-VAYAMHKKY--NKAI 53
Query: 66 KGHAAKANTTPK-RFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIKRH 124
+G K + + K + E+G ++ + V + +KG+GF G +KR
Sbjct: 54 EGQQKKYQLSKEFNHFATLKASQQKELG-DLDLSALETLKRVKASFKTKGRGFAGVMKRW 112
Query: 125 GQSRGPMAHGSRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNV 183
GP AHGSR+HRRPGS+G +V KG+K+AG GN+ VT QN V++ E V
Sbjct: 113 NFQGGPAAHGSRFHRRPGSIGNREWPGRVQKGRKMAGHYGNELVTCQNEVLS-FDKESMV 171
Query: 184 ILVKGNVPG 192
+++KG+V G
Sbjct: 172 LVLKGSVAG 180
sp|P56031|RL3_HELPY 50S RIBOSOMAL PROTEIN L3 >gi|2314481|gb|AAD08358.1| (AE000633)
ribosomal protein L3 (rpl3) [Helicobacter pylori 26695]
Length = 191
Score = 78.4 bits (190), Expect = 4e-14
Identities = 62/189 (32%), Positives = 99/189 (51%), Gaps = 14/189 (7%)
Query: 6 LGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPA 65
L +K+GM++ N PVT+++ VLQ K + + +A V + ++ NK
Sbjct: 4 LVQKIGMSRTIDANST--PVTLLK-----VLQAKVCQLENGKAL-VAYAMHKK--HNKAI 53
Query: 66 KGHAAKANTTPK-RFVREFKGLEGAEVGAEITVDTFAAGDVVDVTGTSKGKGFQGPIKRH 124
+G K + + K + E+G ++ + V + +KG+GF G +KR
Sbjct: 54 EGQQKKYQLSKEFNHFATLKASQQKELG-DLDLSALETLKRVKASFKTKGRGFAGVMKRW 112
Query: 125 GQSRGPMAHGSRYHRRPGSMGPVA-ANKVPKGKKLAGRMGNKRVTVQNLVIAQVLPEKNV 183
GP AHGSR+HRRPGS+G +V KG+K+AG GN+ VT QN V++ E V
Sbjct: 113 NFQGGPAAHGSRFHRRPGSIGNREWPGRVQKGRKMAGHYGNELVTCQNEVLS-FDKESMV 171
Query: 184 ILVKGNVPG 192
+++KG+V G
Sbjct: 172 LVLKGSVAG 180
emb|CAA23634| (V00344) ribosomal protein L3 [Escherichia coli]
Length = 80
Score = 73.7 bits (178), Expect = 1e-12
Identities = 39/75 (52%), Positives = 45/75 (60%)
Query: 4 GILGKKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNK 63
G++GKKVGMT+IFTE+G IPVTVIE N V QVK + DGY A QV + K
Sbjct: 3 GLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQVTTGAKKANRVTK 62
Query: 64 PAKGHAAKANTTPKR 78
P GH AKA R
Sbjct: 63 PEAGHFAKAGVEAGR 77
sp|O26110|RL3_METTH 50S RIBOSOMAL PROTEIN L3P >gi|2621048 (AE000795) ribosomal protein
L3 (E.coli L3) [Methanobacterium thermoautotrophicum]
Length = 337
Score = 71.8 bits (173), Expect = 4e-12
Identities = 80/282 (28%), Positives = 114/282 (40%), Gaps = 86/282 (30%)
Query: 5 ILGKKVGMTQIF---------TENGEL-IPVTVIEATPNTVLQVKSVETDGYEATQVGFD 54
+ G K GMT + TE E+ PVT++E P TV+ V++ YE T G
Sbjct: 41 LAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRT-----YEKTSRGLK 95
Query: 55 TLREVLTNK-----------PAKGHAAKAN-------------------------TTPKR 78
TL EVL + PA + +A + PK+
Sbjct: 96 TLGEVLATETKDDLRRKLTPPADDYDQEAAIEKIRSNMEYVADVRVIVHTNPRLASVPKK 155
Query: 79 FVREFK-GLEGA------EVGAEI------TVDTFAAGDVVDVTGTSKGKGFQGPIKRHG 125
F+ GL G E EI + F+ G VD +KGKGFQGP+KR G
Sbjct: 156 KPEVFECGLGGKTPEEKFEYALEILGKDVRASEIFSEGAFVDAIAVTKGKGFQGPVKRWG 215
Query: 126 --QSRGPMAHGSRYHRRPGSMGPVAANKVPKGKKLAGRMGNKRVTVQNLVIAQV------ 177
G A S+ R GS+GP ++ AG+MG R T N I ++
Sbjct: 216 IRIQYGKAARSSK-GRHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEA 274
Query: 178 -------------LPEKNVILVKGNVPGAKKSLIVVKSAIKA 206
L + +++KG+VPG K L+V++ AI+A
Sbjct: 275 DLVNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAIRA 316
sp|O28354|RL3_ARCFU 50S RIBOSOMAL PROTEIN L3P >gi|2648621 (AE000971) LSU ribosomal
protein L3P (rpl3P) [Archaeoglobus fulgidus]
Length = 331
Score = 66.7 bits (160), Expect = 1e-10
Identities = 79/277 (28%), Positives = 110/277 (39%), Gaps = 79/277 (28%)
Query: 3 KGILGKKVGMTQIFTEN--------GE--LIPVTVIEATPNTVLQVKSVETDGYEATQVG 52
+G G K GMT + + GE ++PVTVIE P V V+ Y+ TQ G
Sbjct: 38 QGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRV-----YKKTQYG 92
Query: 53 FDTLREVLTNK-----------------PAKGHAAKANTT-----------------PKR 78
EV +N K AA N PK+
Sbjct: 93 MQIAAEVWSNNLDDFLDRRLNLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKK 152
Query: 79 F-----------VREFKGLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRHGQ 126
V E +++G EI+V + F G ++DV +KGKGFQGP+KR G
Sbjct: 153 VPDVMEHRIGGNVEEALDYAISKLGKEISVSEVFDEGAIIDVIAVTKGKGFQGPVKRWGV 212
Query: 127 SRGPMAHG-SRYHRRPGSMGPVAANKVPKGKKLAGRMG-------NKR----------VT 168
H S HRR G++GP + V AG+MG NKR +T
Sbjct: 213 ITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEEIT 272
Query: 169 VQNLVIAQVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
+ + + +LV G+VPG K LI ++ AI+
Sbjct: 273 PKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAIR 309
sp|P20279|RL3_HALMA 50S RIBOSOMAL PROTEIN L3P (HMAL3) (HL1) >gi|71097|pir||R5HS3L
ribosomal protein L3 - Haloarcula marismortui >gi|148801
(J05222) ribosomal protein L3 [Haloarcula marismortui]
Length = 338
Score = 59.7 bits (142), Expect = 2e-08
Identities = 74/278 (26%), Positives = 106/278 (37%), Gaps = 75/278 (26%)
Query: 3 KGILGKKVGMTQIFTENGE----------LIPVTVIEATPNTVLQVKSVETDGY---EAT 49
+G G K GMT + N E +PVTVIE P + +++ E Y T
Sbjct: 40 QGFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLT 99
Query: 50 QVGFDTLREVL--TNKPAKGHAAKA---------------------NTTP---------K 77
+V D L T + H A +T P K
Sbjct: 100 EVWTDEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKK 159
Query: 78 RFVREFK------------GLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRH 124
V E + L+ E G E + D F AG+ DV G +KGKG QGP+KR
Sbjct: 160 PDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGKGTQGPVKRW 219
Query: 125 GQSRGPMAHGSR-YHRRPGSMGPVAANKVPKGKKLAGRMG-------NKRV--------- 167
G + H + + RR G++GP ++V G+ G NKR+
Sbjct: 220 GVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP 279
Query: 168 TVQNLVIAQVLPEKNVILVKGNVPGAKKSLIVVKSAIK 205
TV + + LVKG+VPG K L+ + A++
Sbjct: 280 TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVPFRPAVR 317
sp|P54014|RL3_METJA 50S RIBOSOMAL PROTEIN L3P >gi|2144769|pir||A64322 ribosomal protein
L3 - Methanococcus jannaschii >gi|1590928 (U67474) LSU
ribosomal protein L3P (rplC) [Methanococcus jannaschii]
Length = 335
Score = 58.2 bits (138), Expect = 5e-08
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 91 VGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSR-YHRRPGSMGPVA 148
+G ++ + D F G++VD G +KGKGFQG +KR G H + R GS+GP
Sbjct: 180 LGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQ 239
Query: 149 ANKVPKGKKLAGRMGNKRVTVQNLVIAQV-----------------LPEKNVILVKGNVP 191
V + G+MG + T N I ++ + N +++KG+V
Sbjct: 240 PKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDEITPKGGFLHYGVIRNNYVVLKGSVQ 299
Query: 192 GAKKSLIVVKSAIK 205
G K LIV++ AI+
Sbjct: 300 GPAKRLIVLRRAIR 313
sp|Q06844|RL3_HALHA 50S RIBOSOMAL PROTEIN L3P >gi|629397|pir||S43420 ribosomal protein
L3 - Halobacterium halobium >gi|2425176|dbj|BAA22270.1|
(AB006961) ribosomal protein L3 [Halobacterium halobium]
Length = 330
Score = 55.8 bits (132), Expect = 3e-07
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 16/124 (12%)
Query: 98 DTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKVPKGKK 157
D F AG+ D G +KGKG QGP+KR G + H RR G++GP ++V
Sbjct: 186 DVFRAGEFADAAGITKGKGTQGPVKRWGVQKRKGKHARHVARRIGNLGPWNPSRVRSTVP 245
Query: 158 LAGRMGNKRVTVQNLVIAQV-----------LPEKNVI-----LVKGNVPGAKKSLIVVK 201
G+ G + T N + + P + LVKG+VPG ++ L+ +
Sbjct: 246 QQGQTGYHQRTELNKRLIDINDGDEPSPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFR 305
Query: 202 SAIK 205
++
Sbjct: 306 LGVR 309
emb|CAB49264.1| (AJ248284) LSU ribosomal protein L3P (rpl3P) [Pyrococcus abyssi]
Length = 361
Score = 54.3 bits (128), Expect = 8e-07
Identities = 60/225 (26%), Positives = 99/225 (43%), Gaps = 55/225 (24%)
Query: 8 KKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAKG 67
+K+G + + GE++ V + AT V+++K KP
Sbjct: 143 QKLGNLEDMIKEGEIVEVRALVATQPWVIKLKK----------------------KPEVM 180
Query: 68 HAAKANTTPKRFVREFKGLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRHGQ 126
A T+ + K ++G E+ V + G+++DV +KGKG QGP+KR G
Sbjct: 181 EYAIGGTSVEEKFNYIK----EKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 236
Query: 127 SRGPMAH-GSRYHRRPGSMGPVAANKVPKGKKLAGRMG-------NKRVTV----QNLVI 174
AH S+ R+ GS+GP +V +AG+MG NKR+ LVI
Sbjct: 237 KL--RAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVI 294
Query: 175 ----AQVLPE----------KNVILVKGNVPGAKKSLIVVKSAIK 205
++ P+ + +++ G+VPGA K +I V+ AI+
Sbjct: 295 DGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIR 339
sp|O59418|RL3_PYRHO 50S RIBOSOMAL PROTEIN L3P >gi|3258212|dbj|BAA30895.1| (AP000007)
362aa long hypothetical 50S ribosomal protein L3
[Pyrococcus horikoshii]
Length = 362
Score = 53.5 bits (126), Expect = 1e-06
Identities = 60/225 (26%), Positives = 99/225 (43%), Gaps = 55/225 (24%)
Query: 8 KKVGMTQIFTENGELIPVTVIEATPNTVLQVKSVETDGYEATQVGFDTLREVLTNKPAKG 67
+K+G + + GE++ V + +T V+++K KP
Sbjct: 144 QKLGALEDMIKEGEIVEVRALVSTQPWVIKLKK----------------------KPEVM 181
Query: 68 HAAKANTTPKRFVREFKGLEGAEVGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRHGQ 126
A T+ + K ++G EI V + G+++DV +KGKG QGP+KR G
Sbjct: 182 EYAIGGTSVEEKFNYIK----EKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGI 237
Query: 127 SRGPMAH-GSRYHRRPGSMGPVAANKVPKGKKLAGRMG-------NKRVTV----QNLVI 174
AH S+ R+ GS+GP +V +AG+MG NKR+ LVI
Sbjct: 238 KL--RAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGENGKLVI 295
Query: 175 ----AQVLPE----------KNVILVKGNVPGAKKSLIVVKSAIK 205
++ P+ + +++ G+VPGA K +I V+ AI+
Sbjct: 296 DGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIR 340
emb|CAB57584.1| (Y18930) ribosomal protein L3 (HMAL3) [Sulfolobus solfataricus]
Length = 351
Score = 52.7 bits (124), Expect = 2e-06
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 21/134 (15%)
Query: 91 VGAEITV-DTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRY-HRRPGSMGPVA 148
+G EIT+ D F G ++DV G +KGKGF G IKR+ P H R R+ G+ GP
Sbjct: 199 LGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGPSL 258
Query: 149 ANKVPKGKKLAGRMGNKRVTVQNLVIAQV-----------------LPEKNVILVKGNVP 191
P G++G R T N I ++ + +L++G++
Sbjct: 259 G--TPSYTPQPGQLGFHRRTEYNKRIIKIGDEPKEINPAGGFVRYGIVRNTYVLLEGSIL 316
Query: 192 GAKKSLIVVKSAIK 205
G+KK I ++ ++
Sbjct: 317 GSKKRPIFLREPVR 330
sp|Q9YFM2|RL3_AERPE 50S RIBOSOMAL PROTEIN L3P >gi|5103618|dbj|BAA79139.1| (AP000058)
344aa long hypothetical 50S ribosomal protein L3
[Aeropyrum pernix]
Length = 344
Score = 47.3 bits (110), Expect = 1e-04
Identities = 41/128 (32%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 98 DTFAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRY-HRRPG--SMGPVAANKVPK 154
D F G +VDV +KGKGFQG IKR G P H R RR G S G + P+
Sbjct: 195 DVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRRIGARSHGRSTFWETPQ 254
Query: 155 GKKLAGRMGNKRVTVQNLVIAQV-----------------LPEKNVILVKGNVPGAKKSL 197
AG+ G R T N I + + +++ G++PG K
Sbjct: 255 ----AGQTGFHRRTEYNKRILMIDDDGYKVTPAGGFLRYGVVRSTFVMLSGSIPGTPKRP 310
Query: 198 IVVKSAIK 205
IV++ AI+
Sbjct: 311 IVMRWAIR 318
emb|CAA10068| (AJ012585) ribosomal protein L3 [Tetrahymena thermophila]
Length = 391
Score = 41.0 bits (94), Expect = 0.008
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 94 EITVDT-FAAGDVVDVTGTSKGKGFQGPIKRHGQSRGPMAHGSRYHRRPGSMGPVAANKV 152
E+ VD+ FA +++DV G +KGKGF G IKR G + R +R+ G +G +++
Sbjct: 200 EVKVDSIFAENEMLDVLGVTKGKGFAGVIKRFG-VKHLQKKTHRGYRKVGCIGAWHPSRI 258
Query: 153 PKGKKLAGRMGNKRVTVQNLVIAQV 177
AG++G T N + +V
Sbjct: 259 RFTVPRAGQLGYHHRTETNKKVYRV 283
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.313 0.133 0.368
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55405187
Number of Sequences: 457798
Number of extensions: 2236665
Number of successful extensions: 4823
Number of sequences better than 1.0e-02: 62
Number of HSP's better than 0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4649
Number of HSP's gapped (non-prelim): 68
length of query: 207
length of database: 140,871,481
effective HSP length: 58
effective length of query: 149
effective length of database: 114,319,197
effective search space: 17033560353
effective search space used: 17033560353
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 93 (40.6 bits)