Score E
Sequences producing significant alignments: (bits) Value
sp|O07874|RNH2_STRPN RIBONUCLEASE HII (RNASE HII) >gi|22093... 298 5e-80
emb|CAA99565.1| (Z75208) hypothetical protein [Bacillus sub... 183 2e-45
gb|AAF30807.1|AE002137_6 (AE002137) ribonuclease HII [Ureap... 122 4e-27
gb|AAD19205| (AE001687) Ribonuclease HII [Chlamydia pneumon... 99 3e-20
gb|AAC67598.1| (AE001275) Ribonuclease HII [Chlamydia trach... 83 2e-15
gi|2984074 (AE000755) hypothetical protein [Aquifex aeolicus] 83 3e-15
gi|2622126 (AE000875) ribonuclease HII [Methanobacterium th... 62 7e-09
sp|P47441|Y199_MYCGE HYPOTHETICAL PROTEIN MG199 >gi|1361632... 62 7e-09
dbj|BAA30762| (AP000006) 220aa long hypothetical ribonuclea... 57 2e-07
sp|Q57599|Y135_METJA HYPOTHETICAL PROTEIN MJ0135 >gi|212924... 56 4e-07
emb|CAB49440.1| (AJ248284) ribonuclease HII (rnhB) [Pyrococ... 55 5e-07
dbj|BAA32803| (AB012613) ribonuclease HII [Pyrococcus kodak... 50 2e-05
dbj|BAA79461.1| (AP000059) 227aa long hypothetical ribonucl... 46 3e-04
dbj|BAA16659| (D90899) ribonuclease HII [Synechocystis sp.] 45 6e-04
gi|2650000 (AE001062) ribonuclease HII (rnhB) [Archaeoglobu... 45 0.001
sp|Q10236|YD12_SCHPO HYPOTHETICAL 36.8 KD PROTEIN C4G9.02 I... 45 0.001
ref|NP_006388.1|| ribonuclease HI, large subunit >gi|333476... 44 0.002
sp|O07874|RNH2_STRPN RIBONUCLEASE HII (RNASE HII) >gi|2209339 (U93576) ribonuclease HII
[Streptococcus pneumoniae]
Length = 290
Score = 298 bits (754), Expect = 5e-80
Identities = 158/286 (55%), Positives = 207/286 (72%), Gaps = 2/286 (0%)
Query: 2 NIVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLA 61
+I L K+ Q E Y++ SKNPYI +F K+ + ++S+YTSGK++ QG AEK A
Sbjct: 3 SITLTPSEKDIQAFLEHYQTSLAPSKNPYIRYFLKLPQATVSIYTSGKILLQGEGAEKYA 62
Query: 62 SDFGHIA-QVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLT 120
S FG+ A + + LIGTDEVGNGSYFGGL V A+FV+ + +FL+++GV DSK LT
Sbjct: 63 SFFGYQAVEQTSGQNLPLIGTDEVGNGSYFGGLAVVAAFVTPDQHDFLRKLGVGDSKTLT 122
Query: 121 DEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKP 180
D+KI QIAP L ++I H AL++ P+KYNEVI YNAVS+KVALHNQAIYLL Q G +P
Sbjct: 123 DQKIRQIAPILKEKIQHQALLLSPSKYNEVIGDRYNAVSVKVALHNQAIYLL-LQKGVQP 181
Query: 181 ENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKL 240
E IVIDAFT+ NY KY+ +E N ++L KAE ++LAVAVSS+I+R LFLENL+ L
Sbjct: 182 EKIVIDAFTSAKNYDKYLAQETNRFSNPISLEEKAEGKYLAVAVSSVIARDLFLENLENL 241
Query: 241 SKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQKA 286
+E G+ LPSGAG SDK+A+QI+++ G+ LN AKLHF NT+KA
Sbjct: 242 GRELGYQLPSGAGTASDKVASQILQAYGMQGLNFCAKLHFKNTEKA 287
emb|CAA99565.1| (Z75208) hypothetical protein [Bacillus subtilis]
>gi|2635327|emb|CAB14822| (Z99118) similar to
hypothetical proteins [Bacillus subtilis]
Length = 313
Score = 183 bits (459), Expect = 2e-45
Identities = 120/306 (39%), Positives = 167/306 (54%), Gaps = 21/306 (6%)
Query: 4 VLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASD 63
V+K+ Q+ Y S F AK +I+ Y SGKV+FQG A ++
Sbjct: 5 VIKVSLSAIDQMKMTYSGSLTASVPQGAVFQAKPPGCTITAYQSGKVLFQGKNAAAESAR 64
Query: 64 FGHIAQVVPQKQT------------------NLIGTDEVGNGSYFGGLMVTASFVSEENL 105
+G A+ +K+T ++IG+DEVG G YFG + V ++V + L
Sbjct: 65 WG-TAEPQEKKKTAKKPADPRYAPPADIAGMSVIGSDEVGTGDYFGPMTVVCAYVDKTML 123
Query: 106 NFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALH 165
+KE+GV DSK L D +I +IA LI IP+ LV++ KYN + G + +K LH
Sbjct: 124 PLMKELGVKDSKDLKDPQIIEIARNLIKTIPYSLLVLKNEKYNSMQEKGMSQGKMKALLH 183
Query: 166 NQAI-YLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAV 224
NQAI +LL K G KPE I+ID F Y ++ K ++ + TKAE LAVA
Sbjct: 184 NQAITHLLRKLDGVKPEAILIDQFAEPGVYFNHL-KGRDIVKERTYFSTKAEGIHLAVAA 242
Query: 225 SSIISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQ 284
+SII+RY FL + KLS+ +G TLP GAG D+ AA++I +G AL KLHFANTQ
Sbjct: 243 ASIIARYSFLMEMDKLSRAAGMTLPKGAGPHVDEAAAKLILKKGASALRTFTKLHFANTQ 302
Query: 285 KAIKIA 290
KA ++A
Sbjct: 303 KAQRLA 308
gb|AAF30807.1|AE002137_6 (AE002137) ribonuclease HII [Ureaplasma urealyticum]
Length = 316
Score = 122 bits (303), Expect = 4e-27
Identities = 82/311 (26%), Positives = 153/311 (48%), Gaps = 25/311 (8%)
Query: 3 IVLKLETKERQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLAS 62
+ +KL + + + ++ Y + + Y + K+ T I +Y + ++ +
Sbjct: 4 VSVKLTSNQVDKFLILWRPYLVHNNHNYAKYTFKIDGTLIIIYNTNTCTINTHDINSFLN 63
Query: 63 DF---------GHIAQVVPQKQTN---------------LIGTDEVGNGSYFGGLMVTAS 98
F I Q V K+ N +IG+DEVG G FGG++V A
Sbjct: 64 TFLKREDLTLFNVIKQQVNTKKNNQNVMSQSEIYESAQVIIGSDEVGVGDLFGGIVVCAV 123
Query: 99 FVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAV 158
+ + + + + + DSKKL D+++ +I ++ ++I + + P +YNE+I NA
Sbjct: 124 SLKKSDFKKINHLKIIDSKKLNDQQMQEIYQQIKNQISYTIVSYNPKEYNELIKEYNNAH 183
Query: 159 SIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQ 218
+K LH +A+ + V+DAF++ N+ +Y+ K P L+ KAE
Sbjct: 184 ILKTILHYKALQSEIHKHAKYSIFSVVDAFSSLKNWNQYLQKVNFQPYEPNLLIPKAESI 243
Query: 219 FLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGN-LSDKIAAQIIKSQGVDALNQLAK 277
+ +VA++SII+R +FL+ + + ++ +P G+ N L + +A+ I + G+ L Q+AK
Sbjct: 244 YTSVALASIIARVMFLKMIAIIEEQFNVKIPLGSSNPLVNDVASNIFQKFGLKILKQVAK 303
Query: 278 LHFANTQKAIK 288
HF+N Q+ IK
Sbjct: 304 EHFSNFQQIIK 314
gb|AAD19205| (AE001687) Ribonuclease HII [Chlamydia pneumoniae]
Length = 298
Score = 99.5 bits (244), Expect = 3e-20
Identities = 86/293 (29%), Positives = 135/293 (45%), Gaps = 26/293 (8%)
Query: 4 VLKLETKERQQLAEKYKSYEQVSKNPYITFF-AKVGKTSISVYTSGKVVFQGNEAEK--- 59
V+ L T + L ++ K + P T F A+ + ++Y SGK+V QG +E+
Sbjct: 6 VVTLTTSAQNNLRDQLKEKNFIFSQPQNTVFQARSNTVTCTLYPSGKLVIQGKGSEEFIE 65
Query: 60 ------LASDFGHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSE-ENLNFLKEIG 112
+ F H V Q +G DE G G +FG L + A + S E L L E
Sbjct: 66 FFLEPEILHTFTHAR--VEQDLRPRLGVDESGKGDFFGPLCIAAVYASNAEILKKLYENK 123
Query: 113 VADSKKLTDEKICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLL 172
V DSK L D KI +A + +++ P KYNE+ N ++ H I
Sbjct: 124 VQDSKNLKDTKIASLARIIRSLCVCDVIILYPEKYNELYGKFQNLNTLLAWAHATVI--- 180
Query: 173 EKQLGHKPENIVI---DAFT-TEANYKKYVNKEQNHPLTKVTLLTKAE-DQFLAVAVSSI 227
L KP V D F +E K + K++ T +TL+ K +Q + VA +SI
Sbjct: 181 -NNLAPKPAGDVFAISDQFAASEYTLLKALQKKE----TDITLIQKPRAEQDVVVAAASI 235
Query: 228 ISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHF 280
++R F+++++KL ++ LP GAG +I K +G + L +++K HF
Sbjct: 236 LARDAFVQSIQKLEEQYQVQLPKGAGFNVKAAGREIAKQRGKELLAKISKTHF 288
gb|AAC67598.1| (AE001275) Ribonuclease HII [Chlamydia trachomatis]
Length = 300
Score = 83.5 bits (203), Expect = 2e-15
Identities = 71/278 (25%), Positives = 121/278 (42%), Gaps = 16/278 (5%)
Query: 12 RQQLAEKYKSYEQVSKNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDF------- 64
R+QL +K + +S P+ F + S +VY SGK+V QG ++ F
Sbjct: 18 REQLEKKGFT---ISIPPHTVFQGRSPTVSCTVYQSGKIVVQGKGTQEFVEFFLEPEILQ 74
Query: 65 GHIAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSE-ENLNFLKEIGVADSKKLTDEK 123
+Q V Q + IG DE G G +FG L + S + + L + + DSK + D K
Sbjct: 75 TFSSQNVQQDLRSRIGVDESGKGDFFGPLCTAGVYASSPQAIEALYKTSICDSKLIPDAK 134
Query: 124 ICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENI 183
I +A + + + P KYN + A+ N S+ H I L P
Sbjct: 135 ILSLAQNIRSLCACKVITLFPEKYNALYANFQNLNSLLAWTHATII----DNLAPHPAGA 190
Query: 184 VIDAFTTEANYKKYVNKEQNHPLTKVTLLTK-AEDQFLAVAVSSIISRYLFLENLKKLSK 242
V A+ ++ + + + + L+ + +Q + VA +SI++R FL ++ L
Sbjct: 191 VFAISDQFASSERVLLQAVRKKCSDIELIQRHRAEQDVVVAAASILAREAFLSSIHALES 250
Query: 243 ESGFTLPSGAGNLSDKIAAQIIKSQGVDALNQLAKLHF 280
+ L GA + A +I+ ++G L ++ K HF
Sbjct: 251 QYQIRLLKGASGKVKQRAKEILHNKGQVVLEKVCKTHF 288
gi|2984074 (AE000755) hypothetical protein [Aquifex aeolicus]
Length = 257
Score = 82.7 bits (201), Expect = 3e-15
Identities = 59/263 (22%), Positives = 121/263 (45%), Gaps = 24/263 (9%)
Query: 16 AEKYKSYEQVS-----KNPYITFFAKVGKTSISVYTSGKVVFQGNEAEKLASDFGHIAQV 70
AEK ++Y S PY + + + Y +G ++ QG +EK+ + ++ +
Sbjct: 11 AEKIQNYLVSSGFRKINAPYTLWALEGNGVKVYYYKTGSLLIQGKNSEKVLKEVLNLLE- 69
Query: 71 VPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPK 130
+ L G DE G G FG L++ + EEN + + D+K+L+D+++ ++
Sbjct: 70 ----KKKLPGCDESGKGDIFGSLVLCCVCIPEENYLKVSSLNPRDTKRLSDKRVERLYLA 125
Query: 131 LIDRIPHVALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTT 190
L + ++P +YN++ N + + I ++++ G +V+D +
Sbjct: 126 LKPLVKAYCYEIKPEEYNKLYRKFRNLNKMMTHFYKLLIERVKEECG--VSEVVVDKY-- 181
Query: 191 EANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPS 250
+ ++P + + ++ LAVAV+SI +RY FL++LK++ +E G +P
Sbjct: 182 ----------QPSNPFGEDVIFETEAERNLAVAVASIFARYKFLQSLKEVERELGIKIPK 231
Query: 251 GAGNLSDKIAAQIIKSQGVDALN 273
G ++A + + LN
Sbjct: 232 GTSKEVKELAKSLKNPERFIKLN 254
gi|2622126 (AE000875) ribonuclease HII [Methanobacterium thermoautotrophicum]
Length = 206
Score = 61.7 bits (147), Expect = 7e-09
Identities = 60/214 (28%), Positives = 107/214 (49%), Gaps = 19/214 (8%)
Query: 78 LIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPH 137
++G DE G G G L+V + E + L+++GV DSKKLT E+ +A K I RI
Sbjct: 3 VLGIDEAGRGPVIGPLVVAGVMIPERKFSILRKMGVKDSKKLTPERRRFLARK-IRRIAR 61
Query: 138 VALV-VEPAKYNEVIASGYNAVSI-KVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYK 195
V V + + + + G+N I K+A+ + E Q P+ ++ID + + +
Sbjct: 62 VFTVKISASDIDRMRERGFNLNEIEKIAIKR---IIPEAQ----PDRVIID--SVDVKPE 112
Query: 196 KYVNKEQNH-PLTKVTLLTKAEDQFLAVAVSSIIS---RYLFLENLKKLSKESGFTLPSG 251
+ + ++H +VT A+ ++ VA +SII+ R L +E+++K +++ G G
Sbjct: 113 RLEEEIRSHFGEIEVTAEHGADTRYYPVAAASIIAKVERDLEIESIQKKNRKLG---DIG 169
Query: 252 AGNLSDKIAAQIIKSQGVDALNQLAKLHFANTQK 285
+G SD + ++S D L + +A QK
Sbjct: 170 SGYPSDPRTREFLESFTYDELPDFVRRSWATVQK 203
sp|P47441|Y199_MYCGE HYPOTHETICAL PROTEIN MG199 >gi|1361632|pir||I64221 hypothetical
protein MG199 - Mycoplasma genitalium (SGC3) >gi|3844796
(U39699) conserved hypothetical protein [Mycoplasma
genitalium]
Length = 167
Score = 61.7 bits (147), Expect = 7e-09
Identities = 46/161 (28%), Positives = 81/161 (49%), Gaps = 9/161 (5%)
Query: 137 HVALVVEPAKYNEVIASGYNAVSIKVALHNQAIY-LLEK-QLGHKPENIVIDAFTTEANY 194
H + ++P +YN++ S N + LH Q LLEK QL + I ID F + +
Sbjct: 3 HHTITLDPKQYNDLTKSLKNTNLLLTNLHCQLYQKLLEKNQLLRQTVTISIDQFANQELF 62
Query: 195 KKYVNKEQNHPLTKVTL----LTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPS 250
Y+NK N V L L E + L +A +SI++R F+ L+ L+++ + LP
Sbjct: 63 VNYLNKLTNFTDKTVLLPDQFLINGETKSLVIAAASILARDSFINQLQLLNQKVNYDLPK 122
Query: 251 GAGNLSDKIAAQIIKSQG---VDALNQLAKLHFANTQKAIK 288
G+ + ++ + + +G ++ Q+AKL+F N K ++
Sbjct: 123 GSSHGIEQALLFLNQQRGFSQIEQFKQVAKLNFKNVTKFLQ 163
dbj|BAA30762| (AP000006) 220aa long hypothetical ribonuclease H II [Pyrococcus
horikoshii]
Length = 220
Score = 57.0 bits (135), Expect = 2e-07
Identities = 51/183 (27%), Positives = 94/183 (50%), Gaps = 19/183 (10%)
Query: 80 GTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRI-PHV 138
G DE G G G L++ + + E+N+ L++IGV DSK+LT + ++ KLID + +
Sbjct: 5 GVDEAGRGPVIGPLVIGVAVIDEKNIERLRDIGVKDSKQLTPGQREKLFSKLIDILDDYY 64
Query: 139 ALVVEPAKYNEVIAS--GYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKK 196
L+V P + +E S A VAL++ I KP+ I +D + + + K+
Sbjct: 65 VLLVTPKEIDERHHSMNELEAEKFVVALNSLRI---------KPQKIYVD--SADVDPKR 113
Query: 197 YVNKEQNHPLTKVTLLT--KAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGN 254
+ + + + T++ KA+ ++ V+ +SII++ ++KL ++ G G+G
Sbjct: 114 FASLIKAGLKYEATVIAEHKADAKYEIVSAASIIAKVTRDREIEKLKQKYG---EFGSGY 170
Query: 255 LSD 257
SD
Sbjct: 171 PSD 173
sp|Q57599|Y135_METJA HYPOTHETICAL PROTEIN MJ0135 >gi|2129242|pir||G64316 ribonuclease H
(EC 3.1.26.4) II - Methanococcus jannaschii >gi|1590900
(U67470) ribonuclease HII (rnhB) [Methanococcus
jannaschii]
Length = 230
Score = 55.8 bits (132), Expect = 4e-07
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 15/186 (8%)
Query: 78 LIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPH 137
+IG DE G G G ++V A + +E LK++GV DSK+LT K + KL++ + +
Sbjct: 3 IIGIDEAGRGPVLGPMVVCAFAIEKEREEELKKLGVKDSKELTKNKRAYL-KKLLENLGY 61
Query: 138 VALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKY 197
V + A+ + + N I++ ++ L ++L + + I I N KK+
Sbjct: 62 VEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLIEKLNIRDDEIEIYIDACSTNTKKF 121
Query: 198 ----------VNKEQNHPLTKVTLLTKAEDQFLAVAVSSIIS---RYLFLENLKKLSKES 244
+ KE+N + K+ KA+ ++ V+ +SII+ R ++ KK+ +
Sbjct: 122 EDSFKDKIEDIIKERNLNI-KIIAEHKADAKYPVVSAASIIAKAERDEIIDYYKKIYGDI 180
Query: 245 GFTLPS 250
G PS
Sbjct: 181 GSGYPS 186
emb|CAB49440.1| (AJ248284) ribonuclease HII (rnhB) [Pyrococcus abyssi]
Length = 224
Score = 55.4 bits (131), Expect = 5e-07
Identities = 52/181 (28%), Positives = 83/181 (45%), Gaps = 15/181 (8%)
Query: 80 GTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVA 139
G DE G G G L++ A+ V E+ + L ++GV DSK+LT + KL D I V
Sbjct: 5 GADEAGRGPVIGPLVIVAAVVEEDKIRSLTKLGVKDSKQLTPAQ----REKLFDEIVKVL 60
Query: 140 LVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGH---KPENIVIDAFTTEANYKK 196
Y+ VI S + K +++ + K L KPE I ID+ +A
Sbjct: 61 -----DDYSVVIVSPQDIDGRKGSMNELEVENFVKALNSLKVKPEVIYIDSADVKAERFA 115
Query: 197 YVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLS 256
+ + KV KA+ ++ V+ +SI+++ + ++KL E G G+G S
Sbjct: 116 ENIRSRLAYEAKVVAEHKADAKYEIVSAASILAKVIRDREIEKLKAEYG---DFGSGYPS 172
Query: 257 D 257
D
Sbjct: 173 D 173
dbj|BAA32803| (AB012613) ribonuclease HII [Pyrococcus kodakaraensis]
Length = 228
Score = 50.4 bits (118), Expect = 2e-05
Identities = 50/181 (27%), Positives = 88/181 (47%), Gaps = 11/181 (6%)
Query: 78 LIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPH 137
+ G DE G G G +++ A V E +L L+E+ V DSKKLT ++ ++ +++ +
Sbjct: 3 IAGIDEAGRGPVIGPMVIAAVVVDENSLPKLEELKVRDSKKLTPKRREKLFNEILGVLDD 62
Query: 138 VALVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAF-TTEANYKK 196
++ P +VI S ++ + + N A L L KP+ I DA E + +
Sbjct: 63 YVILELPP---DVIGSREGTLN-EFEVENFAKAL--NSLKVKPDVIYADAADVDEERFAR 116
Query: 197 YVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLS 256
+ + N +V KA+D F V+ +SI+++ ++KL +E G G+G S
Sbjct: 117 ELGERLNFE-AEVVAKHKADDIFPVVSAASILAKVTRDRAVEKLKEEYG---EIGSGYPS 172
Query: 257 D 257
D
Sbjct: 173 D 173
dbj|BAA79461.1| (AP000059) 227aa long hypothetical ribonuclease HII [Aeropyrum
pernix]
Length = 227
Score = 46.5 bits (108), Expect = 3e-04
Identities = 45/181 (24%), Positives = 79/181 (42%), Gaps = 11/181 (6%)
Query: 78 LIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPH 137
++G DE G GS G L+V V E L L+ +GV DSK+L+ +L I
Sbjct: 6 VVGVDEAGRGSLVGDLVVAGFAVEEARLGELQSLGVRDSKQLSP----AARVELYREISG 61
Query: 138 VA-LVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKK 196
V VE + E+ N + K + + + LG P +V+D + +
Sbjct: 62 VGFFTVEAIRPWEIDGENINILVTKAV--EEIVSRIVSYLGVHPSLVVVDKYGDVQGLRL 119
Query: 197 YVNKEQNHPLTKVTLLTKAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGNLS 256
+ + P + + KA+ ++ V+ +SI+++ + L+ L + G G+G S
Sbjct: 120 ALTRLGIEP-RSILVEEKADSRYPVVSAASIVAKVVRDARLQVLRRMYGV---RGSGYPS 175
Query: 257 D 257
D
Sbjct: 176 D 176
dbj|BAA16659| (D90899) ribonuclease HII [Synechocystis sp.]
Length = 190
Score = 45.3 bits (105), Expect = 6e-04
Identities = 23/58 (39%), Positives = 35/58 (59%)
Query: 78 LIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRI 135
+ G DEVG G+ FG ++ A V E +N L+ +GV DSK+L+ + Q+A L D +
Sbjct: 1 MAGVDEVGRGALFGPVVAAAVLVPIEAINQLQALGVKDSKQLSPQHRSQLAQALPDYV 58
gi|2650000 (AE001062) ribonuclease HII (rnhB) [Archaeoglobus fulgidus]
Length = 205
Score = 44.5 bits (103), Expect = 0.001
Identities = 49/191 (25%), Positives = 89/191 (45%), Gaps = 24/191 (12%)
Query: 80 GTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPKLIDRIPHVA 139
G DE G G G L+V S+E+ L+++GV DSKKL+ + ++A ++
Sbjct: 4 GIDEAGKGCVIGPLVVAGVACSDEDR--LRKLGVKDSKKLSQGRREELAEEIRKICRTEV 61
Query: 140 LVVEPAKYNEVIASGYNAVSIKVALHNQAIYLLEKQLGHKPENIVIDAFTTEANYKKYVN 199
L V P +E +A A +I L ++ L KPE +D+ +
Sbjct: 62 LKVSPENLDERMA----AKTINEILKECYAEII---LRLKPEIAYVDS-------PDVIP 107
Query: 200 KEQNHPLTKVTLLT-----KAEDQFLAVAVSSIISRYLFLENLKKLSKESGFTLPSGAGN 254
+ + L ++T L KA++++ VA +SII++ +++L ++ G G+G
Sbjct: 108 ERLSRELEEITGLRVVAEHKADEKYPLVAAASIIAKVEREREIERLKEKFG---DFGSGY 164
Query: 255 LSDKIAAQIIK 265
SD +++K
Sbjct: 165 ASDPRTREVLK 175
sp|Q10236|YD12_SCHPO HYPOTHETICAL 36.8 KD PROTEIN C4G9.02 IN CHROMOSOME I
>gi|1204203|emb|CAA93552.1| (Z69727) hypothetical
protein [Schizosaccharomyces pombe]
Length = 326
Score = 44.5 bits (103), Expect = 0.001
Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 24/226 (10%)
Query: 55 NEAEKLASDFGH--IAQVVPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNF-LKEI 111
N++ S++ H + + + Q +G DE G G G ++ ++ ++F L
Sbjct: 40 NKSNPAKSNYYHSTVTDDISKSQPYRLGVDEAGRGPVLGPMVYAVAYCP---VDFDLTNY 96
Query: 112 GVADSKKLTDEK-------ICQIAPKLIDRIPHVALVVEPAKYNEVIASGYNAVSIKVAL 164
G ADSK L K IC + +L + + + + + N ++ +
Sbjct: 97 GFADSKTLASLKREELLKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNLNLQA 156
Query: 165 HNQAIYLLEK--QLGHKPENIVIDAFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAV 222
H+ I L++K + G I +D +Y++ + + + P KVT+ KA+ F V
Sbjct: 157 HDTTIDLIKKVYESGINVTEIYVDTVGPPISYQEKL--QAHFPQAKVTVTKKADSLFPIV 214
Query: 223 AVSSI---ISRYLFLENLKKLSKESGFTLPSGAGNLSDKIAAQIIK 265
+++SI ++R + LE ++ES T G+G SD + +K
Sbjct: 215 SLASICAKVTRDIQLE----CARESIRTENWGSGYSSDARTTEWLK 256
ref|NP_006388.1|| ribonuclease HI, large subunit >gi|3334761|emb|CAB09725| (Z97029)
ribonuclease HI large subunit [Homo sapiens]
Length = 299
Score = 43.8 bits (101), Expect = 0.002
Identities = 44/193 (22%), Positives = 85/193 (43%), Gaps = 16/193 (8%)
Query: 71 VPQKQTNLIGTDEVGNGSYFGGLMVTASFVSEENLNFLKEIGVADSKKLTDEKICQIAPK 130
V +K+ ++G DE G G G ++ + L L+ + VADSK L + + ++ K
Sbjct: 23 VCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAK 82
Query: 131 LIDRIPHVALVVEPAKYNEVIAS--GYNAVSIKVALHNQAIYLLEKQL--GHKPENIVID 186
+ D V ++ N + S G ++ H+ A L++ L G + +D
Sbjct: 83 MED-TDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVD 141
Query: 187 AFTTEANYKKYVNKEQNHPLTKVTLLTKAEDQFLAVAVSSI---------ISRYLFLENL 237
Y+ + +Q+ P +VT+ KA+ + V+ +SI + ++ F+E L
Sbjct: 142 TVGMPETYQAQL--QQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKL 199
Query: 238 KKLSKESGFTLPS 250
+ L + G P+
Sbjct: 200 QDLDTDYGSGYPN 212
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.314 0.131 0.351
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72322141
Number of Sequences: 457798
Number of extensions: 2862472
Number of successful extensions: 6062
Number of sequences better than 1.0e-02: 17
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6035
Number of HSP's gapped (non-prelim): 17
length of query: 292
length of database: 140,871,481
effective HSP length: 62
effective length of query: 230
effective length of database: 112,488,005
effective search space: 25872241150
effective search space used: 25872241150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 95 (41.4 bits)