BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rmaD (115 kb reverse) BIO09.08
(163 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P40762|YVMB_BACSU HYPOTHETICAL 19.7 KD PROTEIN IN CYPX-U... 79 2e-14
gi|2618852 (AF017113) YvnA [Bacillus subtilis] >gi|2636018|... 68 3e-11
emb|CAA96184| (Z71552) AdcR protein [Streptococcus pneumoniae] 66 2e-10
gi|2828809 (AF002191) YhzA homolog [Bacillus subtilis] 57 6e-08
emb|CAA74470.1| (Y14081) hypothetical protein [Bacillus sub... 57 6e-08
emb|CAA04020| (AJ000346) NapB protein [Enterococcus hirae] 47 9e-05
emb|CAA05611| (AJ002571) YkoM [Bacillus subtilis] >gi|26336... 42 0.002
sp|P40762|YVMB_BACSU HYPOTHETICAL 19.7 KD PROTEIN IN CYPX-UVRA INTERGENIC REGION
>gi|629106|pir||S47218 hypothetical protein - Bacillus
subtilis >gi|535052|emb|CAA85355| (Z36881) involved in
protein secretion [Bacillus subtilis] >gi|2618849
(AF017113) YzhA [Bacillus subtilis]
>gi|2636021|emb|CAB15513| (Z99121) alternate gene name:
yzhA; similar to hypothetical proteins [Bacillus
subtilis] >gi|2636034|emb|CAB15525.1| (Z99122) alternate
gene name: yzhA; similar to hypothetical proteins
[Bacillus subtilis]
Length = 169
Score = 79.2 bits (192), Expect = 2e-14
Identities = 40/156 (25%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Query: 4 ADLNQQISKELH-ELRHATDNRSQERSWILAQLDNDKLEKEVLTL--SVVALHILSALTK 60
+DL +Q+ +++ L H + Q+ + L Q + E++V + ++ ++H++ + +
Sbjct: 2 SDLTKQMIYDIYVRLLHLNE---QKANTSLQQFFKEAAEEDVAEIPKNMTSIHVIDCIGQ 58
Query: 61 -EDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIH 119
E + +A K+++++ VT+ LIK +F+ +YQ +KK++++ LT KGR++ +H
Sbjct: 59 HEPINNAGIARKMNLSKANVTKISTKLIKEEFINSYQLTDNKKEVYFKLTRKGRRIFDLH 118
Query: 120 DKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNLT 155
+K+HK ++ Q D ++++E+ +L FL T
Sbjct: 119 EKLHKKKELAFYQFLDSFSQEEQKAVLKFLEQLTST 154
gi|2618852 (AF017113) YvnA [Bacillus subtilis] >gi|2636018|emb|CAB15510|
(Z99121) similar to hypothetical proteins from B.
subtilis [Bacillus subtilis] >gi|2636031|emb|CAB15522.1|
(Z99122) similar to hypothetical proteins from B.
subtilis [Bacillus subtilis]
Length = 157
Score = 68.3 bits (164), Expect = 3e-11
Identities = 42/158 (26%), Positives = 86/158 (53%), Gaps = 15/158 (9%)
Query: 6 LNQQISKELHELRHATDNRSQERSWILAQLDN--------DKLEKEVLTLSVVALHILSA 57
++ I EL + + +R W Q+ + D L+K+ ++ LHI+S
Sbjct: 1 MDNSIHDELFQAIQQFALKRDKRVWQKVQIPSIGISSQHHDHLKKD---WTLTQLHIVSC 57
Query: 58 L-TKEDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVA 116
+ T +++ LA++L +++ V++AV L+K+ +T + +KK+IFY LT GRK+A
Sbjct: 58 IHTSQNVNNSFLASRLHISKAAVSKAVHALLKHNIITVTKKPGNKKEIFYTLTDSGRKLA 117
Query: 117 TIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLSDFNL 154
+H+++H+ + Q+F++++ + + +F FNL
Sbjct: 118 ALHEQLHEKAKEQYKQLFNEFSIDDLKTVTAF---FNL 152
emb|CAA96184| (Z71552) AdcR protein [Streptococcus pneumoniae]
Length = 146
Score = 65.6 bits (157), Expect = 2e-10
Identities = 34/98 (34%), Positives = 56/98 (56%)
Query: 53 HILSALTKEDLTGIELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKG 112
HIL L++E LT ELA +L+V++ VT+A+++L+K L T + D + IFY LT
Sbjct: 42 HILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLA 101
Query: 113 RKVATIHDKMHKIMDIRLGQIFDKYNEQEKSIILSFLS 150
R +A H H+ + Q+ ++ E+ +I FL+
Sbjct: 102 RPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFLT 139
gi|2828809 (AF002191) YhzA homolog [Bacillus subtilis]
Length = 179
Score = 57.4 bits (136), Expect = 6e-08
Identities = 33/111 (29%), Positives = 60/111 (53%), Gaps = 3/111 (2%)
Query: 32 LAQLDNDKLEKEVLTLSVVALHILSAL-TKEDLTGIELATKLSVTRGGVTRAVQNLIKYQ 90
L +LD + K LT++ + H+LS + E + +A K++ T+ V+R L+
Sbjct: 40 LRKLDVEHGSKSQLTMTEI--HVLSCVGDNEPINVTSIAEKMNTTKATVSRISTKLLGAG 97
Query: 91 FLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQE 141
FL Q +KK++++ LT G+K+ ++H H+ + R FD+Y E+E
Sbjct: 98 FLHRTQLSDNKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEE 148
emb|CAA74470.1| (Y14081) hypothetical protein [Bacillus subtilis]
>gi|2633387|emb|CAB12891| (Z99109) similar to
hypothetical proteins [Bacillus subtilis]
Length = 175
Score = 57.4 bits (136), Expect = 6e-08
Identities = 33/111 (29%), Positives = 60/111 (53%), Gaps = 3/111 (2%)
Query: 32 LAQLDNDKLEKEVLTLSVVALHILSAL-TKEDLTGIELATKLSVTRGGVTRAVQNLIKYQ 90
L +LD + K LT++ + H+LS + E + +A K++ T+ V+R L+
Sbjct: 36 LRKLDVEHGSKSQLTMTEI--HVLSCVGDNEPINVTSIAEKMNTTKATVSRISTKLLGAG 93
Query: 91 FLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIMDIRLGQIFDKYNEQE 141
FL Q +KK++++ LT G+K+ ++H H+ + R FD+Y E+E
Sbjct: 94 FLHRTQLSDNKKEVYFRLTPAGKKLHSLHKYYHQKAEQRFLSFFDRYTEEE 144
emb|CAA04020| (AJ000346) NapB protein [Enterococcus hirae]
Length = 150
Score = 46.9 bits (109), Expect = 9e-05
Identities = 21/86 (24%), Positives = 46/86 (53%)
Query: 67 ELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIM 126
+LA +TRG +++ + +I L +YQ +KK+ ++ LT +G+++ +H K+H+
Sbjct: 54 KLANASYMTRGAISKLTKKMITNGLLESYQKPENKKERYFLLTAEGQRINKMHQKLHEEF 113
Query: 127 DIRLGQIFDKYNEQEKSIILSFLSDF 152
+F + ++E + F+ F
Sbjct: 114 LKENEVVFQQMTKEEFDTVFRFIGRF 139
emb|CAA05611| (AJ002571) YkoM [Bacillus subtilis] >gi|2633688|emb|CAB13191|
(Z99110) similar to transcriptional regulator (MarR
family) [Bacillus subtilis] >gi|2633705|emb|CAB13207|
(Z99111) similar to transcriptional regulator (MarR
family) [Bacillus subtilis]
Length = 154
Score = 42.2 bits (97), Expect = 0.002
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 67 ELATKLSVTRGGVTRAVQNLIKYQFLTTYQSESDKKKIFYHLTVKGRKVATIHDKMHKIM 126
++ ++L + G VT + L + FL Q DK+ ++ HLT KG + DK++ I
Sbjct: 62 QIGSRLLLVSGNVTYVIDKLERNGFLVREQDPKDKRSVYAHLTDKGNEYL---DKIYPIH 118
Query: 127 DIRLGQIFD--KYNEQEKSIIL 146
+R+ + F +EQ++ I+L
Sbjct: 119 ALRIARAFSGLSPDEQDQLIVL 140
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.317 0.132 0.352
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37814852
Number of Sequences: 457798
Number of extensions: 1287688
Number of successful extensions: 4374
Number of sequences better than 1.0e-02: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4368
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 140,871,481
effective HSP length: 60
effective length of query: 103
effective length of database: 113,403,601
effective search space: 11680570903
effective search space used: 11680570903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 92 (40.2 bits)