Score E
Sequences producing significant alignments: (bits) Value
sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INT... 390 e-107
gb|AAD20136.1| (AF091502) autoaggregation-mediating protein... 259 3e-68
gb|AAF30996.1|AE002157_1 (AE002157) ATP-dependent RNA helic... 254 1e-66
dbj|BAA19295| (AB001488) ATP-DEPENDENT RNA HELICASE DEAD HO... 246 3e-64
dbj|BAA10556| (D64004) ATP-dependent RNA helicase DeaD [Syn... 233 3e-60
gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A fa... 229 5e-59
gb|AAD07315.1| (AE000544) ATP-dependent RNA helicase, DEAD-... 228 6e-59
sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD HOMOLO... 227 2e-58
gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Heli... 226 3e-58
sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD HOMOLO... 224 1e-57
gb|AAA57965.1| (U18997) two frameshifts relative to ECODEAD... 222 6e-57
sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD 222 6e-57
pir||A42357 probable ATP-dependent RNA helicase deaD - Esch... 222 6e-57
sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 221 8e-57
sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD >gi|62... 221 8e-57
gb|AAD46062.1| (AF076644) DEAD-box protein [Myxococcus xant... 217 2e-55
gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-fami... 217 2e-55
emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis thaliana] 215 4e-55
gb|AAB63833.1| (AC002337) putative ATP-dependent RNA helica... 215 4e-55
sp|P42305|DEAD_BACSU PROBABLE ATP-DEPENDENT RNA HELICASE DE... 215 8e-55
gb|AAD38596.1|AF145621_1 (AF145621) eukaryotic initiation f... 212 5e-54
pir||S00986 translation initiation factor eIF-4A I - mouse 211 9e-54
sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ... 210 1e-53
sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF... 210 1e-53
pir||FIMS4A translation initiation factor eIF-4A - mouse >g... 210 1e-53
ref|NP_001407.1|| eukaryotic translation initiation factor ... 210 1e-53
pir||JS0039 translation initiation factor eIF-4A - mouse >g... 210 2e-53
emb|CAA73167| (Y12590) translation initiation factor eIF4A ... 210 3e-53
emb|CAA40268| (X56953) protein synthesis initiation factor ... 210 3e-53
sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II (EI... 210 3e-53
dbj|BAA04879| (D21853) KIAA0111 [Homo sapiens] 208 7e-53
sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 208 7e-53
ref|NP_001958.1|| eukaryotic translation initiation factor ... 208 7e-53
sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 208 1e-52
emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA HELICAS... 207 1e-52
gi|2443810 (AF020432) eukaryotic translation initiation fac... 207 1e-52
sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-LIKE N... 207 2e-52
sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RH... 207 2e-52
emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [Mus ... 206 2e-52
ref|NP_010304.1|FAL1| DEAD-box protein, putative RNA helica... 205 5e-52
prf||1912301A initiation factor eIF-4A [Drosophila melanoga... 205 5e-52
emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 407) ... 205 5e-52
emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio rerio] 205 6e-52
dbj|BAA22326| (D86417) YfmL [Bacillus subtilis] >gi|2633067... 205 6e-52
sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION FACTOR ... 205 6e-52
emb|CAA73168| (Y12591) translation initiation factor eIF4A ... 205 8e-52
gb|AAC24685.1| (AE001274) EIF-4A; L3162.6 [Leishmania major... 204 1e-51
dbj|BAA22535| (AB005147) vas [Danio rerio] 204 1e-51
gb|AAD30651.1|AC006085_24 (AC006085) RNA helicase [Arabidop... 203 2e-51
dbj|BAA31233| (D89592) rhlE [Vibrio alginolyticus] 203 2e-51
gi|2150025 (AF001211) translation initiation factor [Crypto... 203 2e-51
dbj|BAA19572.1| (D86601) DEAD family RNA helicase; germ cel... 203 3e-51
ref|NP_014287.1|DBP2| ATP-dependent RNA helicase of DEAD bo... 202 4e-51
ref|NP_012397.1|TIF2| translation initiation factor eIF4A; ... 202 6e-51
gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema... 201 1e-50
sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3 (EIF... 201 1e-50
gi|2773184 (AF039720) similar to the "DEAD" box family of h... 201 1e-50
emb|CAB51742.1| (AJ245474) RNA helicase-1 [Plasmodium falci... 199 3e-50
dbj|BAA34994.1| (AB017003) DjVLGB [Dugesia japonica] 199 3e-50
emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis thaliana] 199 3e-50
sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-LIKE P... 199 3e-50
emb|CAB61567.1| (AJ250879) ATP-dependent RNA helicase [Cand... 199 5e-50
sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 198 8e-50
ref|NP_031867.1|| DEAD (aspartate-glutamate-alanine-asparta... 198 1e-49
sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P5... 198 1e-49
ref|NP_004388.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 198 1e-49
gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces po... 198 1e-49
emb|CAA76677| (Y17186) translation initiation factor [Pisum... 197 1e-49
dbj|BAA77391.1| (AB013609) DEAD box protein [Cavia porcellus] 197 2e-49
sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >gi|104... 197 2e-49
emb|CAA65745| (X97017) heat resistant RNA dependent ATPase ... 196 2e-49
ref|NP_014847.1|DED1| ATP-dependent RNA helicase of DEAD bo... 196 2e-49
gb|AAD02177.1| (AF040045) DEAD box RNA helicase homolog [An... 196 3e-49
ref|NP_015206.1|DBP1| putative ATP-dependent RNA helicase; ... 196 3e-49
emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae] 196 3e-49
pir||S53814 DEAD box protein - slime mold (Dictyostelium di... 196 3e-49
emb|CAB16225.1| (Z99162) putative ATP-dependent RNA helicas... 196 4e-49
emb|CAA93395| (Z69382) RNA elicase [Saccharomyces cerevisiae] 196 4e-49
sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELICASE P4... 196 4e-49
prf||1705300A ATP dependent RNA helicase [Saccharomyces cer... 195 6e-49
gb|AAB94769| (AF038995) putative RNA helicase RCK [Mus musc... 194 9e-49
ref|NP_004651.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 194 9e-49
sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE ST... 194 9e-49
sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||S14048... 194 9e-49
gb|AAD23001.1|AC007087_20 (AC007087) putative ATP-dependent... 194 1e-48
emb|CAB68195.1| (AL137082) ATP-dependent RNA helicase-like ... 193 2e-48
dbj|BAA88059.1| (AB032566) Vasa [Oncorhynchus mykiss] 193 2e-48
sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CAA31405|... 193 3e-48
pir||A31922 ATP-dependent RNA helicase homolog - fruit fly ... 193 3e-48
gi|2580550 (AF000982) dead box, X isoform [Homo sapiens] >g... 192 4e-48
emb|CAA73349| (Y12819) putative RNA helicase (DEAD box) [Da... 192 4e-48
ref|NP_001347.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 192 4e-48
sp|P16381|PL10_MOUSE PUTATIVE ATP-DEPENDENT RNA HELICASE PL... 192 4e-48
pir||S23696 probable ATP-dependent RNA helicase - Escherich... 192 6e-48
sp|P24229|RHLB_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RH... 192 6e-48
gb|AAF19985.1|AF212866_1 (AF212866) abstrakt protein [Droso... 191 8e-48
gb|AAF04040.1|AF187729_1 (AF187729) DEAD-box protein abstra... 191 8e-48
sp|P24346|AN3_XENLA PUTATIVE ATP-DEPENDENT RNA HELICASE AN3... 191 8e-48
gi|3435312 (AF083255) RNA helicase-related protein [Homo sa... 190 1e-47
gi|2286151 (AF007580) translation initiation factor [Zea mays] 190 1e-47
emb|CAB70750.1| (AL137462) hypothetical protein [Homo sapiens] 190 2e-47
gb|AAF04150.1|AF195417_1 (AF195417) DEAD-box protein abstra... 190 2e-47
sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EI... 190 2e-47
gi|476338 (U08102) putative RNA helicase [Caenorhabditis el... 190 2e-47
emb|CAB51741.1| (AJ245475) RNA helicase-1 [Plasmodium cynom... 190 2e-47
emb|CAA07483| (AJ007376) DBY protein [Mus musculus] 190 2e-47
ref|NP_011932.1|RRP3| RRP3 is a DEAD box gene homologous to... 190 2e-47
pir||S53813 probable RNA helicase - slime mold (Dictyosteli... 190 2e-47
gb|AAF19805.1| (AF180356) EIF4A protein [Brassica oleracea] 189 3e-47
gb|AAC28543.1| (AC004665) putative ATP-dependent RNA helica... 189 3e-47
emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis] 189 3e-47
pir||S30675 mmrA protein - Escherichia coli >gi|148184 (M87... 189 3e-47
pir||S52017 translation initiation factor eIF-4A.9 - common... 189 4e-47
ref|NP_006377.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 189 4e-47
gi|2341061 (U73459) translational initiation factor eIF-4A ... 189 5e-47
pir||S52023 translation initiation factor eIF-4A.14 - commo... 189 5e-47
prf||1705301A ATP dependent RNA helicase [Xenopus laevis] 189 5e-47
sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EI... 189 5e-47
emb|CAB38795.1| (AL035678) putative protein [Arabidopsis th... 188 7e-47
gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [A... 188 7e-47
ref|NP_034158.1|| DEAD (aspartate-glutamate-alanine-asparta... 188 7e-47
sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG) (MVH... 188 7e-47
sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF... 188 7e-47
gb|AAF21155.1|AC010926_7 (AC010926) putative Eukaryotic ini... 188 9e-47
emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis thaliana] 188 9e-47
sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EI... 188 9e-47
ref|NP_010121.1|DHH1| (putative) DEAD box RNA helicase; Dhh... 188 9e-47
sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 188 9e-47
sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF... 188 9e-47
pir||S52020 translation initiation factor eIF-4A.15 - commo... 187 1e-46
sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF... 187 1e-46
sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG)... 187 2e-46
pir||S52019 translation initiation factor eIF-4A.7 - common... 187 2e-46
sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4... 187 2e-46
pir||I51235 DEAD box protein - African clawed frog (fragmen... 187 2e-46
sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF... 187 2e-46
emb|CAB71054.1| (AL137898) DEAD box RNA helicase RH12 [Arab... 186 4e-46
emb|CAB65518.1| (AJ011564) ATP-dependent RNA helicase [Yarr... 185 5e-46
sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-8 (EIF... 185 5e-46
gb|AAD26468.1| (AF140505) DEAD box RNA helicase [Candida al... 185 8e-46
emb|CAB03765.1| (Z81449) similar to ATP-dependent RNA helic... 185 8e-46
sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EI... 185 8e-46
emb|CAA09214| (AJ010475) RNA helicase [Arabidopsis thaliana] 184 1e-45
pir||S52018 translation initiation factor eIF-4A.11 - commo... 184 1e-45
emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis thaliana] 184 1e-45
sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C3... 184 1e-45
sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF... 184 1e-45
gb|AAD40318.1|AF158370_1 (AF158370) DEAD-box RNA helicase [... 183 2e-45
gb|AAF23311.1|AC016661_36 (AC016661) putative RNA helicase ... 183 2e-45
dbj|BAA34993.1| (AB017002) DjVLGA [Dugesia japonica] 183 2e-45
emb|CAB68189.1| (AL137082) ATP-dependent RNA helicase-like ... 183 3e-45
gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase ... 183 3e-45
gb|AAC69128.1| (U78721) putative U5 small nuclear ribonucle... 183 3e-45
sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA >gi|17... 182 4e-45
pir||S12698 probable RNA helicase - Escherichia coli >gi|41... 182 5e-45
dbj|BAA34521.1| (AB018344) KIAA0801 protein [Homo sapiens] 181 9e-45
dbj|BAA25324.1| (AB012389) Moc2 RNA helicase [Schizosacchar... 181 9e-45
gi|2558968 (AF025536) suppressor of uncontrolled mitosis [S... 181 9e-45
pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U25746) R... 181 9e-45
gi|529704 (U13070) similar to RNA helicases [Caenorhabditis... 181 1e-44
dbj|BAA28347| (AB010259) DRH1 [Arabidopsis thaliana] >gi|60... 180 2e-44
gb|AAD30599.1|AC007369_9 (AC007369) Similar to RNA helicase... 180 3e-44
gb|AAD43033.1| (AF106680) RNA helicase [Homo sapiens] 179 4e-44
prf||1406327A growth regulated nuclear 68 protein [Homo sap... 178 8e-44
ref|NP_004387.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 178 8e-44
sp|P47664|Y425_MYCGE PROBABLE RNA HELICASE MG425 >gi|136146... 178 1e-43
ref|NP_031866.1|| DEAD (aspartate-glutamate-alanine-asparta... 178 1e-43
gb|AAD46404.1|AF096248_1 (AF096248) ethylene-responsive RNA... 177 1e-43
pir||PC6010 Gu protein - human (fragment) >gi|2136124|pir||... 177 1e-43
sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >gi|108... 177 2e-43
gb|AAF24010.1|AF083031_7 (AF083031) RNA helicase [Guillardi... 176 3e-43
gb|AAC13628.1| (AF058919) similar to ATP-dependent RNA heli... 175 7e-43
sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE >g... 175 9e-43
gb|AAD43959.2|AF159131_1 (AF159131) nucleolar RNA helicase ... 174 2e-42
ref|NP_004809.1|| prp28, U5 snRNP 100 kd protein >gi|265520... 174 2e-42
sp|P44922|RHLB_HAEIN ATP-DEPENDENT RNA HELICASE RHLB HOMOLO... 174 2e-42
pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly (Dro... 173 2e-42
emb|CAB39031.1| (AL034559) predicted using hexExon; MAL3P7.... 173 3e-42
sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB HOMOLO... 173 3e-42
gb|AAF04377.1|AF188678_1 (AF188678) P72 DEAD box protein [P... 173 3e-42
gb|AAD34681.1|AC006341_9 (AC006341) Similar to gb|L13612 DE... 171 8e-42
gb|AAD38874.1|AF110007_1 (AF110007) p68 RNA helicase [Molgu... 171 1e-41
dbj|BAA13931| (D89270) similar to Saccharomyces cerevisiae ... 170 2e-41
ref|NP_013093.1|DRS1| putative ATP dependent RNA helicase; ... 170 2e-41
gi|171656 (L00683) ATP-dependent RNA helicase [Saccharomyce... 170 2e-41
gb|AAD38876.1|AF110008_1 (AF110008) p68 RNA helicase [Molgu... 169 3e-41
sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1... 169 4e-41
emb|CAA16457| (AL021529) DEAD-box RNA helicase [Streptomyce... 168 9e-41
emb|CAB56376.1| (AL118514) ATP-dependent RNA helicase [Stre... 167 2e-40
gb|AAD55444.1|AF181659_1 (AF181659) BcDNA.GM05306 [Drosophi... 167 2e-40
emb|CAB04518.1| (Z81555) similar to ATP-dependent helicase ... 167 2e-40
ref|NP_011344.1|ROK1| RNA helicase involved in rRNA process... 166 3e-40
emb|CAA22456.1| (AL034488) similar to DEAD/DEAH box helicas... 166 5e-40
ref|NP_009796.1|PRP5| RNA helicase homolog; Prp5p >gi|13080... 164 1e-39
sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1... 163 2e-39
emb|CAB65627.1| (AL049766) dJ686N3.1 (novel ATP dependent R... 162 5e-39
gb|AAF14544.1|AF171063_1 (AF171063) DEAD box RNA helicase G... 160 3e-38
emb|CAB55686.2| (AL049557) dJ773A18.2 (PROBABLE ATP-DEPENDE... 160 3e-38
ref|NP_009135.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 160 3e-38
gb|AAF23310.1|AC016661_35 (AC016661) putative RNA helicase ... 158 1e-37
emb|CAA09212| (AJ010473) RNA helicase [Arabidopsis thaliana] 157 2e-37
emb|CAA21146.1| (AL031786) putative atp dependent rna helic... 155 5e-37
gb|AAF23349.1|AC016163_23 (AC016163) putative ATP-dependent... 155 9e-37
emb|CAB60250.1| (AL132839) probable ATP-dependent RNA helic... 154 1e-36
gb|AAF33472.1| (AF233324) 97% identity with amino acids 1-3... 152 4e-36
gi|2367402 (U86382) mitochondrial DEAD box protein [Trypano... 152 4e-36
emb|CAB64214.1| (AL132958) RNA helicase-like protein [Arabi... 152 6e-36
gb|AAC26676.1| (AC004483) putative RNA helicase [Arabidopsi... 151 1e-35
emb|CAA68194| (X99938) RNA helicase [Arabidopsis thaliana] 151 1e-35
emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea] 150 2e-35
emb|CAB53334.1| (AL109974) putative DEAD-box RNA-helicase [... 149 5e-35
ref|NP_004389.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 147 1e-34
sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1... 145 6e-34
ref|NP_009173.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 145 7e-34
ref|NP_031942.1|| eukaryotic translation initiation factor ... 145 7e-34
gb|AAD32817.1|AC007660_18 (AC007660) ATP-dependent RNA heli... 143 2e-33
dbj|BAA21410| (AB004535) ATP-DEPENDENT RNA HELICASE MSS116 ... 143 2e-33
emb|CAA09374| (AJ010840) ATP-dependent RNA helicase [Homo s... 143 4e-33
ref|NP_011189.1|SPB4| ATP-dependent RNA helicase; Spb4p >gi... 141 1e-32
gi|3165536 (AF067608) similar to DEAD-box helicases (Pfam: ... 140 2e-32
ref|NP_009700.1|MAK5| Probable pre-mRNA splicing RNA-helica... 140 2e-32
gb|AAD27766.1|AF077033_1 (AF077033) putative ATP-dependent ... 139 4e-32
ref|NP_014017.1|HAS1| Putative RNA-dependent helicase; Has1... 139 4e-32
gi|3378056 (AF017777) helicase [Drosophila melanogaster] 138 7e-32
ref|NP_006764.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypept... 138 7e-32
emb|CAA19304.1| (AL023776) probable atp-dependent rna helic... 136 3e-31
gb|AAF09917.1|AE001894_1 (AE001894) ATP-dependent RNA helic... 136 5e-31
emb|CAB03153.1| (Z81094) Similarity to Xenopus ATP-dependen... 135 6e-31
gb|AAD38584.1|AF145609_1 (AF145609) BcDNA.GH02833 [Drosophi... 134 1e-30
ref|NP_013378.1|DBP9| putative RNA helicase; Dbp9p >gi|2500... 133 2e-30
emb|CAA16673| (AL021684) DEAD box ATP dependent helicase pr... 131 2e-29
emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis thaliana] 126 3e-28
sp|P52271|Y308_MYCGE PROBABLE RNA HELICASE MG308 >gi|136146... 125 7e-28
emb|CAA99891.1| (Z75546) similar to ATP dependent RNA helic... 121 1e-26
pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal D... 119 5e-26
emb|CAA09213| (AJ010474) RNA helicase [Arabidopsis thaliana] 118 9e-26
sp|P75335|Y308_MYCPN PROBABLE RNA HELICASE MG308 HOMOLOG >g... 112 7e-24
dbj|BAA11901.1| (D83386) UORF6 [Shewanella violacea] 112 7e-24
emb|CAA20842.1| (AL031545) DEAD box ATP-dependent RNA helic... 109 5e-23
dbj|BAA13920| (D89259) similar to Saccharomyces cerevisiae ... 101 1e-20
gi|2734866 (U72484) RNA helicase [Fugu rubripes] 94 3e-18
dbj|BAA20963| (D00852) ORF similar to initiation factor 4A ... 82 7e-15
pir||JQ0886 hypothetical protein (estA 3' region) - Pseudom... 80 5e-14
pir||E64496 eIF-4A family probable ATP-dependent RNA helica... 79 8e-14
ref|NP_012949.1|DBP7| putative RNA helicase; Dbp7p >gi|5495... 78 1e-13
dbj|BAA87175.1| (AB027871) Suppressor of uncontrolled mitos... 77 2e-13
emb|CAB70733.1| (AL137423) hypothetical protein [Homo sapiens] 76 7e-13
emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis thaliana] 75 1e-12
emb|CAA09210| (AJ010471) RNA helicase [Arabidopsis thaliana... 73 5e-12
emb|CAA09198| (AJ010459) RNA helicase [Arabidopsis thaliana] 72 1e-11
emb|CAA09207| (AJ010468) RNA helicase [Arabidopsis thaliana] 66 8e-10
dbj|BAA30100| (AP000004) 873aa long hypothetical helicase [... 63 4e-09
emb|CAB62889.1| (AL035475) hypothetical protein, MAL4P2.48 ... 60 5e-08
gi|1931649 (U95973) DNA helicase isolog [Arabidopsis thaliana] 57 2e-07
gi|2621366 (AE000816) ATP-dependent helicase [Methanobacter... 55 2e-06
sp|Q09811|HUS2_SCHPO ATP-DEPENDENT DNA HELICASE HUS2 >gi|21... 54 2e-06
ref|NP_013915.1|SGS1| has DNA helicase signature motifs; Sg... 54 2e-06
gb|AAF14851.1|AC011664_33 (AC011664) putative helicase [Ara... 53 3e-06
emb|CAA72075| (Y11190) hypothetical protein [Arabidopsis th... 53 3e-06
emb|CAA21460.1| (AL031986) putative protein (fragment) [Ara... 52 8e-06
emb|CAA20044| (AL031135) putative protein [Arabidopsis thal... 52 8e-06
emb|CAA09408| (AJ010931) p68 RNA helicase [Homo sapiens] 51 2e-05
gi|1217992 (U25436) Tif2p [Saccharomyces cerevisiae] 51 2e-05
emb|CAA09412| (AJ010935) p68 RNA helicase [Canis familiaris... 50 3e-05
emb|CAA63974| (X94313) p68 RNA helicase [Mus musculus] 50 3e-05
gi|4156075 (AE001567) TRANSCRIPTION-REPAIR COUPLING FACTOR ... 49 7e-05
gb|AAC33384| (U20246) putative DEAH ATP-dependent helicase ... 48 2e-04
emb|CAA10162| (AJ012745) RH27 helicase [Arabidopsis thaliana] 47 3e-04
sp|P45125|UVRB_HAEIN EXCINUCLEASE ABC SUBUNIT B >gi|1074062... 47 3e-04
sp|P50729|RECQ_BACSU ATP-DEPENDENT DNA HELICASE RECQ >gi|11... 46 6e-04
sp|O26066|MFD_HELPY TRANSCRIPTION-REPAIR COUPLING FACTOR (T... 45 0.001
sp|O06150|UVRB_MYCTU EXCINUCLEASE ABC SUBUNIT B >gi|2113917... 44 0.002
ref|NP_002898.1|| RecQ protein-like (DNA helicase Q1-like) ... 44 0.002
emb|CAA09411| (AJ010934) p68 RNA helicase [Rattus norvegicus] 44 0.003
emb|CAB49203.1| (AJ248283) ATP-dependent RNA helicase, EIF-... 43 0.004
pir||A55311 RECQL protein - human 43 0.004
sp|P73421|RECQ_SYNY3 ATP-DEPENDENT DNA HELICASE RECQ >gi|16... 43 0.005
pir||S50114 DNA helicase Q1 - human >gi|531243|dbj|BAA07200... 42 0.009
sp|P54475|YQFR_BACSU PROBABLE RNA HELICASE IN CCCA-SODA INTERGENIC REGION
>gi|1303839|dbj|BAA12495| (D84432) YqfR [Bacillus
subtilis] >gi|2634947|emb|CAB14444| (Z99116) similar to
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 438
Score = 390 bits (991), Expect = e-107
Identities = 192/392 (48%), Positives = 270/392 (67%), Gaps = 3/392 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF + K +I + + F +PT++Q++LIP VL ++G+S+TG+GKTH +LLP+
Sbjct: 5 KFELYELKPFIIDAVHRLGFYEPTDIQKRLIPAVLKKESVIGQSQTGTGKTHAYLLPLLN 64
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVND--KLRVSNFVGGTDKARQIKKLES 119
KID D VQ VITAP+RELA QIY+ A + T+ + ++R F+GGTDK + I KL+
Sbjct: 65 KIDPAKDVVQVVITAPTRELANQIYQEALKITQGEEGSQIRSKCFIGGTDKQKSIDKLKI 124
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
QPH+V+GTPGRI DLIK AL VH A + V+DEAD+ LDMGFLADVD I S + +QM
Sbjct: 125 -QPHLVVGTPGRIADLIKEQALSVHKAESLVIDEADLMLDMGFLADVDYIGSRMPEDLQM 183
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
LVFSATIP+KL+PFLKKY+ NP + K V + IE+ L+ +K ++LL +
Sbjct: 184 LVFSATIPEKLKPFLKKYMENPKYAHVEPKQVTAAKIEHILIPSKHRDKDKLLFDIMSHL 243
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
NPY+ ++FANTK D I +LT G+K+ +HG + PRERK++M I +L++ Y++ATD
Sbjct: 244 NPYLGIVFANTKNTADHIAQYLTGKGMKIGLLHGGLTPRERKKVMKQINDLEFTYIIATD 303
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
+AARGIDI+GVSH+IN E+P DL F+VHRVGR+ R G G A+T+Y +D+ ++ +EKM
Sbjct: 304 LAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGSSGQAMTIYELTDEDALVRLEKM 363
Query: 360 GVTFQPKAIKDGEIVDSYDRDRREKRTKKQDE 391
G+ F+ ++ GE DR RR+KR K +E
Sbjct: 364 GIEFEYLELEKGEWKKGDDRQRRKKRKKTPNE 395
gb|AAD20136.1| (AF091502) autoaggregation-mediating protein [Lactobacillus
reuteri]
Length = 497
Score = 259 bits (655), Expect = 3e-68
Identities = 131/359 (36%), Positives = 217/359 (59%), Gaps = 2/359 (0%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
MKF++ D + + ++ +E+ T +QE+ IP+VL G+D++G+++TG+GKT F LPI
Sbjct: 1 MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPII 60
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+ +DT+ +QA+I +P+RELA Q + K + +RV GG D RQIK L+
Sbjct: 61 ENVDTENPNIQAIIISPTRELAIQTQEELYRLGK-DKHVRVQVVYGGADIRRQIKSLKQ- 118
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P +++GTPGR+ D I + + + T V+DEAD L+MGFL D++ I Q L
Sbjct: 119 HPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGFLEDIESIIKETPDDRQTL 178
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+P +++ +++ +P +I K + +D ++ + V + ++ +L +
Sbjct: 179 LFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYVRARDYEKFDIMTRLIDVQD 238
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
P + ++F TK RVD++ L + G A IHGD+ +R +IM KN + +VATD+
Sbjct: 239 PDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDV 298
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
AARG+DI GV+H+ N +IP D +VHR+GR+GR G G ++T +P++ + EIEK+
Sbjct: 299 AARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKL 357
gb|AAF30996.1|AE002157_1 (AE002157) ATP-dependent RNA helicase [Ureaplasma urealyticum]
Length = 443
Score = 254 bits (641), Expect = 1e-66
Identities = 143/396 (36%), Positives = 223/396 (56%), Gaps = 9/396 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
MKF N++ +I +L N K +PT +Q K +P++ +++G + TG+GKT F+LPI
Sbjct: 1 MKFNS-NYQKWILDSLINQKIFEPTPIQLKTMPLIAKRENIIGVAPTGTGKTLAFVLPIL 59
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+D ++Q +I P+RELA QI+ F K L+V +GG +QI + +
Sbjct: 60 NNLDLS-QKLQVIIITPTRELARQIFSKIIVFKKHQPLLQVKMLIGGESIDQQINS-QLN 117
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF-GKRVQM 179
+ ++I TP R+ ++ L +H N V DEADM +D+GF++D++ I S F K VQ
Sbjct: 118 KSQLLIATPTRLKQILTRQILDLHHVNALVFDEADMLMDLGFISDLEFINSQFTNKDVQK 177
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
+ FSAT+ + L LKKY N + I+N + I ++++ H+ ++ K
Sbjct: 178 ISFSATLHEMLSIQLKKYFKNTKIINISNSIYENKKITHYVIHNHDKWHSLSIIM--KTI 235
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
PY+ +IFANTK V+ I+ +L V +HG + RERK IKN +QYVVA+D
Sbjct: 236 KPYLCIIFANTKKEVEAIYQYLIQQNKNVCILHGSLLQRERKNNYRDIKNNKFQYVVASD 295
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
IA+RG+DI+GVSHIIN +P + +++HR GRSGR G + LY + + + K
Sbjct: 296 IASRGLDIDGVSHIINWNLPTENEWYIHRAGRSGRGKYSGESYVLYDQKEHDKLLNLSKK 355
Query: 360 GVTFQPKAIKDGEIVDS---YDRDRREKRTKKQDEI 392
G+ F K IK+ E+ D + + + K K Q+EI
Sbjct: 356 GIVFHHKFIKENELFDKEFLFKKKNQFKDLKTQNEI 391
dbj|BAA19295| (AB001488) ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG. [Bacillus
subtilis] >gi|2632758|emb|CAB12265| (Z99106) similar to
ATP-dependent RNA helicase [Bacillus subtilis]
Length = 511
Score = 246 bits (621), Expect = 3e-64
Identities = 125/358 (34%), Positives = 213/358 (58%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DFN + + + + FE+ T +Q + IP+ LS +D++G+++TG+GKT F +P+ +K
Sbjct: 22 FQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVEK 81
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVND--KLRVSNFVGGTDKARQIKKLESS 120
I+ + +QA++ AP+RELA Q+ ++E K+ + +V GG D RQI+ L+ +
Sbjct: 82 INPESPNIQAIVIAPTRELAIQV---SEELYKIGQDKRAKVLPIYGGQDIGRQIRALKKN 138
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P++++GTPGR+ D I + ++ NT V+DEAD L+MGF+ D++ I S+ Q L
Sbjct: 139 -PNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQTL 197
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+P ++ ++++ P K+ K + I+ + + + L +L +
Sbjct: 198 LFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQERKKFDTLTRLLDIQS 257
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
P +A++F TK RVD++ L G IHGD+ +R + K + +VATD+
Sbjct: 258 PELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVLVATDV 317
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
AARG+DI GV+H+ N ++P+D +VHR+GR+GR G G A+T +P + S +R IE+
Sbjct: 318 AARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKSMLRAIEQ 375
dbj|BAA10556| (D64004) ATP-dependent RNA helicase DeaD [Synechocystis sp.]
Length = 492
Score = 233 bits (587), Expect = 3e-60
Identities = 131/356 (36%), Positives = 206/356 (57%), Gaps = 4/356 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + Q L +I FE PT++Q + IP++LSGRD++ +S+TG+GKT F LP+ +
Sbjct: 9 FADLGLSEKRCQLLADIGFEAPTQIQTEAIPLLLSGRDMLAQSQTGTGKTAAFALPLMDR 68
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
ID + D +QA+I P+RELA Q+ +A ++F+ +L + N GG RQI+ LE
Sbjct: 69 IDPEGD-LQALILTPTRELAQQVAEAMKDFSHER-RLFILNVYGGQSIERQIRSLERGV- 125
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+V+GTPGR+ DLI L + T V+DEAD L MGF+ DV I Q F
Sbjct: 126 QIVVGTPGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRKTPPTRQTACF 185
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNP 241
SAT+P++++ + ++L++P + + IE L +G S + L + + +P
Sbjct: 186 SATMPREIKELVNQFLNDPALVTVKQTQSTPTRIEQQLYHVPRGWSKAKALQPILEMEDP 245
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
A+IF TK D+ L G V + HG++ +R+R+++ ++ + VVATDIA
Sbjct: 246 ESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKLVVATDIA 305
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
ARG+D+ +SH++N ++P + ++HR+GR+GR G G AI L P D +R IE
Sbjct: 306 ARGLDVNNLSHVVNFDLPDNAETYIHRIGRTGRAGKTGKAIALVEPIDRRLLRSIE 361
gi|2621248 (AE000807) ATP-dependent RNA helicase, eIF-4A family
[Methanobacterium thermoautotrophicum]
Length = 425
Score = 229 bits (577), Expect = 5e-59
Identities = 131/389 (33%), Positives = 218/389 (55%), Gaps = 15/389 (3%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
++F++F+ IN+ L+++ FE T +Q +P+ L G D+VGE++TG+GKT F +P+
Sbjct: 4 LEFSEFDISGDINRALDDMGFESTTPIQALTLPVTLDGMDVVGEAQTGTGKTAAFAIPVL 63
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+ ++ + QA+I P+REL Q+ + + K K++V GG QI +L
Sbjct: 64 ENLEAERVP-QALIICPTRELCLQVSEEIKRIGKYM-KVKVLAVYGGQSIGNQIAQLRRG 121
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HV++ TPGR+ D I+ + + +T V+DEAD L+MGF+ D+++I S +R Q +
Sbjct: 122 V-HVIVATPGRLIDHIERGTVDLGGISTVVLDEADEMLNMGFIDDIERILSHVPERRQTM 180
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+ + + +KY+ NP + ++ K S I+ + T+ +LL + + N
Sbjct: 181 LFSATVSKPILRIARKYMRNPQVMRVEKKH--SPKIDEFYFKTREEDKVELLDWILSSNN 238
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
M +IF NTK RV + L G +IHGD+ +R+R+M + D+ +VATD+
Sbjct: 239 IRMGLIFCNTKRRVQRLRRQLNRMGYSADEIHGDLSQSKRERVMERFRRGDFSLLVATDV 298
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMG 360
AARGI + V ++N ++P + ++VHR+GR+GR G G + TL S+ +R I+
Sbjct: 299 AARGIHVPDVEAVVNYDLPFENEYYVHRIGRTGRAGSSGKSFTLVVGSEVHRLRRIQ--- 355
Query: 361 VTFQPKAIKDG------EIVDSYDRDRRE 383
+F K IK EI Y+ D RE
Sbjct: 356 -SFTGKRIKQSNMPSPEEIRRGYEMDLRE 383
gb|AAD07315.1| (AE000544) ATP-dependent RNA helicase, DEAD-box family (deaD)
[Helicobacter pylori 26695]
Length = 492
Score = 228 bits (576), Expect = 6e-59
Identities = 124/378 (32%), Positives = 206/378 (53%), Gaps = 11/378 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K+ + +++ F P+ +QEK IP VL GRD++ +++TG+GKT F LPI
Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV--GGTDKARQIKKLESS 120
+ + ++A++ P+RELA QI + E K+ R GG +Q + ++ +
Sbjct: 82 LKNN-HTIEALVITPTRELAMQI---SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P V+I TPGR+ D +K+ + V+DE+D LDMGFL D+++I Q+L
Sbjct: 138 -PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+P+ ++ K L NP+ IA + + I + +++L
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
P +++F TK D++H FL S K +HGD+ R+R+ + + K D +VATD+
Sbjct: 257 PKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI----REI 356
A+RG+DI GVSH+ N +P + ++HR+GR+GR G +G AITL +P + + +EI
Sbjct: 317 ASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 357 EKMGVTFQPKAIKDGEIV 374
+ F+ I + +I+
Sbjct: 377 DSEIELFEIPTINENQII 394
sp|P44586|DEAD_HAEIN ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1073892|pir||F64056
ATP-dependent RNA helicase (deaD) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573195 (U32709)
ATP-dependent RNA helicase (deaD) [Haemophilus
influenzae Rd]
Length = 613
Score = 227 bits (572), Expect = 2e-58
Identities = 125/357 (35%), Positives = 200/357 (56%), Gaps = 1/357 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D ++I + + ++ FE P+ +Q+ IP +L+G D++G ++TGSGKT F LP+ +
Sbjct: 7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQ 66
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
ID Q ++ AP+RELA Q+ A + F K R+ GG Q++ L+
Sbjct: 67 IDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGA- 125
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
VV+GTPGRI D I+ L + V+DEAD L MGF+ DV+ + + + Q +F
Sbjct: 126 QVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALF 185
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P+ ++ K+++++P KI + I+ G N+ LL+ + +
Sbjct: 186 SATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWYVHGVRKNEALLRFLEVEDFD 245
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IFA TK DI L NG + A ++GD+ + R++ ++ ++N VVATD+AA
Sbjct: 246 AAIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNGSLDIVVATDVAA 305
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
RGIDIE +S ++N +IP D +VHR+GR+GR G G A+ P + +R IE +
Sbjct: 306 RGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNIEHL 362
gi|4154758 (AE001461) ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori
J99]
Length = 491
Score = 226 bits (570), Expect = 3e-58
Identities = 123/378 (32%), Positives = 206/378 (53%), Gaps = 11/378 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K+ + +++ F P+ +QEK IP VL GRD++ +++TG+GKT F LPI
Sbjct: 22 FNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDVIAQAQTGTGKTAAFALPIINN 81
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV--GGTDKARQIKKLESS 120
+ + ++A++ P+RELA QI + E K+ R GG +Q + ++ +
Sbjct: 82 LKNN-HTIKALVITPTRELAMQI---SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKN 137
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P V+I TPGR+ D +K+ + V+DE+D LDMGFL D+++I Q+L
Sbjct: 138 -PQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLDDIEEIFDYLPSEAQIL 196
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+P+ ++ K L NP+ IA + + I + +++L
Sbjct: 197 LFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVINEHERAEAIMRLLDTQA 256
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
P +++F TK D++H FL S K +HGD+ R+R+ + + K D +VATD+
Sbjct: 257 PEKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSIMAFKKNDADVLVATDV 316
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI----REI 356
A+RG+DI GVSH+ + +P + ++HR+GR+GR G +G AITL +P + + +EI
Sbjct: 317 ASRGLDISGVSHVFSYHLPLNTESYIHRIGRTGRAGKKGMAITLVTPLEYKELLRMQKEI 376
Query: 357 EKMGVTFQPKAIKDGEIV 374
+ F+ I + +I+
Sbjct: 377 DSEIELFEIPTINENQII 394
sp|Q11039|DEAD_MYCTU ATP-DEPENDENT RNA HELICASE DEAD HOMOLOG >gi|1480333|emb|CAB00899|
(Z77137) deaD [Mycobacterium tuberculosis]
Length = 563
Score = 224 bits (565), Expect = 1e-57
Identities = 125/357 (35%), Positives = 197/357 (55%), Gaps = 5/357 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + ++ +E PT +Q IP +++G D+VG ++TG+GKT F +P+ K
Sbjct: 15 FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
ID QA++ P+RELA Q+ +A + +L V GG+ A Q+ L
Sbjct: 75 IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA- 133
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
VV+GTPGR+ D ++ L + + V+DEAD L MGF DV++I S + Q+ +F
Sbjct: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P ++ KYLH+P KT +++ I + + L P+
Sbjct: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQV---ARKMDALTRVLEVEPF 250
Query: 243 MAMI-FANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
AMI F TK ++I L + G A I GDVP +R+R + ++++ D +VATD+A
Sbjct: 251 EAMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARG+D+E +SH++N +IP D +VHR+GR+GR G G A+ SP + ++ IEK
Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEK 367
gb|AAA57965.1| (U18997) two frameshifts relative to ECODEAD [Escherichia coli]
>gi|1789553 (AE000397) inducible ATP-independent RNA
helicase [Escherichia coli]
Length = 646
Score = 222 bits (559), Expect = 6e-57
Identities = 125/392 (31%), Positives = 216/392 (54%), Gaps = 2/392 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K I + L ++ +EKP+ +Q + IP +L+GRD++G ++TGSGKT F LP+ Q
Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+D +L Q ++ AP+RELA Q+ +A +F+K + V GG Q++ L P
Sbjct: 85 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 143
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+V+GTPGR+ D +K L + + V+DEAD L MGF+ DV+ I + + Q +F
Sbjct: 144 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 203
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P+ ++ ++++ P +I + I + G N+ L++ +A +
Sbjct: 204 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 263
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IF TK ++ L NG A ++GD+ R++ + +K+ ++ATD+AA
Sbjct: 264 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 323
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGV 361
RG+D+E +S ++N +IP D +VHR+GR+GR G G A+ + +R IE+ M +
Sbjct: 324 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 383
Query: 362 TFQPKAIKDGEIVDSYDRDRREKRTKKQDEIS 393
T + + E++ ++ + ++Q E S
Sbjct: 384 TIPEVELPNAELLGKRRLEKFAAKVQQQLESS 415
sp|P23304|DEAD_ECOLI ATP-DEPENDENT RNA HELICASE DEAD
Length = 646
Score = 222 bits (559), Expect = 6e-57
Identities = 125/392 (31%), Positives = 216/392 (54%), Gaps = 2/392 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K I + L ++ +EKP+ +Q + IP +L+GRD++G ++TGSGKT F LP+ Q
Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+D +L Q ++ AP+RELA Q+ +A +F+K + V GG Q++ L P
Sbjct: 85 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 143
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+V+GTPGR+ D +K L + + V+DEAD L MGF+ DV+ I + + Q +F
Sbjct: 144 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 203
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P+ ++ ++++ P +I + I + G N+ L++ +A +
Sbjct: 204 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 263
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IF TK ++ L NG A ++GD+ R++ + +K+ ++ATD+AA
Sbjct: 264 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 323
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGV 361
RG+D+E +S ++N +IP D +VHR+GR+GR G G A+ + +R IE+ M +
Sbjct: 324 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 383
Query: 362 TFQPKAIKDGEIVDSYDRDRREKRTKKQDEIS 393
T + + E++ ++ + ++Q E S
Sbjct: 384 TIPEVELPNAELLGKRRLEKFAAKVQQQLESS 415
pir||A42357 probable ATP-dependent RNA helicase deaD - Escherichia coli
>gi|145727 (M63288) deaD [Escherichia coli]
Length = 571
Score = 222 bits (559), Expect = 6e-57
Identities = 125/392 (31%), Positives = 216/392 (54%), Gaps = 2/392 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K I + L ++ +EKP+ +Q + IP +L+GRD++G ++TGSGKT F LP+ Q
Sbjct: 25 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQN 84
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+D +L Q ++ AP+RELA Q+ +A +F+K + V GG Q++ L P
Sbjct: 85 LDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 143
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+V+GTPGR+ D +K L + + V+DEAD L MGF+ DV+ I + + Q +F
Sbjct: 144 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 203
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P+ ++ ++++ P +I + I + G N+ L++ +A +
Sbjct: 204 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFD 263
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IF TK ++ L NG A ++GD+ R++ + +K+ ++ATD+AA
Sbjct: 264 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 323
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGV 361
RG+D+E +S ++N +IP D +VHR+GR+GR G G A+ + +R IE+ M +
Sbjct: 324 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 383
Query: 362 TFQPKAIKDGEIVDSYDRDRREKRTKKQDEIS 393
T + + E++ ++ + ++Q E S
Sbjct: 384 TIPEVELPNAELLGKRRLEKFAAKVQQQLESS 415
sp|P27639|IF4A_CAEEL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|283547|pir||S26281
translation initiation factor eIF-4A homolog -
Caenorhabditis elegans >gi|6700|emb|CAA78102| (Z12116)
unnamed protein product [Caenorhabditis elegans]
>gi|532818 (U13876) C. elegans eukaryotic initiation
factor 4a (EMBL:Z12116) [Caenorhabditis elegans]
Length = 402
Score = 221 bits (558), Expect = 8e-57
Identities = 127/375 (33%), Positives = 209/375 (54%), Gaps = 12/375 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K+ + + + FEKP+ +Q++ I +G+D++ ++++G+GKT TF + I Q+
Sbjct: 31 FDDMELKEELLRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQR 90
Query: 63 IDTDLDEVQAVITAPSRELATQIYK---AAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
ID + VQA++ AP+RELA QI K A E+ VN + +GGT +KLE+
Sbjct: 91 IDHEDPHVQALVMAPTRELAQQIQKVMSALGEYLNVN----ILPCIGGTSVRDDQRKLEA 146
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
HVV+GTPGR+ D+I NAL FV+DEAD L GF + ++ S + VQ+
Sbjct: 147 GI-HVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEMLSRGFKDQIYEVFRSMPQDVQV 205
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKA 238
++ SAT+P ++ +++ NP+ + + + I + ++ + L L
Sbjct: 206 VLLSATMPSEVLDVTNRFMRNPIRILVKKDELTLEGIRQFYINVQKDEWKFDCLCDLYNV 265
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
N A+IF NT+ +VD + +T N V+ +HGD+ ER IM ++ + ++ T
Sbjct: 266 VNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITT 325
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
DI ARGID++ VS +IN ++P + ++HR+GRSGR G +G AI + +D ++EIE
Sbjct: 326 DILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVAINFVTENDARQLKEIES 385
Query: 359 MGVT---FQPKAIKD 370
T P++I D
Sbjct: 386 YYTTQIEEMPESIAD 400
sp|P33906|DEAD_KLEPN ATP-DEPENDENT RNA HELICASE DEAD >gi|625758|pir||JX0314 DEAD box
protein - Klebsiella pneumoniae >gi|149184 (L08387) RNA
helicase [Klebsiella pneumoniae]
Length = 659
Score = 221 bits (558), Expect = 8e-57
Identities = 126/392 (32%), Positives = 214/392 (54%), Gaps = 2/392 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K I + L ++ +EKP+ +Q + IP +L GRD++G ++TGSGKT F LP+
Sbjct: 24 FADLGLKAPILEALTDLGYEKPSPIQAECIPHLLDGRDVLGMAQTGSGKTAAFSLPLLNN 83
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
ID +L Q ++ AP+RELA Q+ +A EF+K + V GG Q++ L P
Sbjct: 84 IDPELRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQG-P 142
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+V+GTPGR+ D +K L + + V+DEAD L MGF+ DV+ I + + Q +F
Sbjct: 143 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 202
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT+P+ ++ ++++ P +I + I + G N+ L++ +A +
Sbjct: 203 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTAYGMRKNEALVRFLEAEDFD 262
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IF TK ++ L NG A ++GD+ R++ + +K+ ++ATD+AA
Sbjct: 263 AAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQALERLKDGRLDILIATDVAA 322
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGV 361
RG+D+E +S ++N +IP D +VHR+GR+GR G G A+ + +R IE+ M +
Sbjct: 323 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKL 382
Query: 362 TFQPKAIKDGEIVDSYDRDRREKRTKKQDEIS 393
T + + E++ ++ + ++Q E S
Sbjct: 383 TIPEVELPNAELLSKRRLEKFAAKVQQQLESS 414
gb|AAD46062.1| (AF076644) DEAD-box protein [Myxococcus xanthus]
Length = 808
Score = 217 bits (546), Expect = 2e-55
Identities = 129/367 (35%), Positives = 199/367 (54%), Gaps = 6/367 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + I L + PT VQ + + G+DL+ SKTG+GKT F LP+ +K
Sbjct: 31 FDDMNLSEPIRLALAERGYTNPTPVQARAFRPAIEGKDLIVRSKTGTGKTAAFGLPLLEK 90
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
I D V+A+I P+RELA Q+ + K + L+++ GG +Q LE P
Sbjct: 91 IPADERRVRALILCPTRELALQVADELKMLAK-HKGLKIAAIYGGASMKQQEDALEEGTP 149
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+++GTPGR+ D I L + + V+DEAD L+ GF +V +I K Q+L+F
Sbjct: 150 -IIVGTPGRVFDHINRGNLKLDACDHAVLDEADEMLNQGFYEEVTRILDRLPKTRQVLLF 208
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIEN--WLVSTKGSSHNQLLLQLTKATN 240
SAT+P +Q + +Y N ++ + I + + VS L+ L K
Sbjct: 209 SATVPTDIQNLIARYTTNAETLLLSGDVFTVEHIHHIRYDVSDAFPKPRNLIYVLEKE-E 267
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
P A+IF NT+ + L NG ++GD+P +ER+R+M +K + ++VATDI
Sbjct: 268 PQNAIIFCNTRDDTALVTAVLNRNGFDAELLNGDLPQKERERVMGKVKRGEVAFMVATDI 327
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KM 359
AARGIDI G+ ++IN +P+D ++HRVGR+GR G +GTAI L+S + ++ +E K
Sbjct: 328 AARGIDISGLEYVINYSLPEDPAVYLHRVGRTGRIGNKGTAINLFSGRELATYTSLEKKY 387
Query: 360 GVTFQPK 366
G+ F +
Sbjct: 388 GIKFDKR 394
gi|2648271 (AE000949) ATP-dependent RNA helicase, DEAD-family (deaD)
[Archaeoglobus fulgidus]
Length = 368
Score = 217 bits (546), Expect = 2e-55
Identities = 118/359 (32%), Positives = 205/359 (56%), Gaps = 5/359 (1%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSG-RDLVGESKTGSGKTHTFLLPI 59
++F D + + FEKPTE+Q ++IP G +D+VG+++TGSGKT F LPI
Sbjct: 7 VEFEDLGISENGLNAVRRKGFEKPTEIQREIIPRFFEGEKDMVGQAQTGSGKTAAFALPI 66
Query: 60 FQKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+D +VQA++ P+RELA Q+ K E + K+ V GG QI++L
Sbjct: 67 LDLVDERSKDVQAIVITPTRELALQV-KDEIESLRGGKKVHVLAVYGGQPIFPQIERLRK 125
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
+V+GTPGR+ D ++ L + FV+DEAD LDMGF+ D+++I G ++
Sbjct: 126 GV-QIVVGTPGRVIDHLERRTLSLEKVRFFVLDEADRMLDMGFIDDIERILRHAGAERRV 184
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
L+FSAT+P ++ ++Y+ + + ++ +K + + +E+ + + L ++
Sbjct: 185 LMFSATMPPEVLRLARRYMRDYEVVRVHSK-ITPENVEHRCLKVNPEKRFEHLCRILDEN 243
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
N Y ++F TK ++ L + G K ++GD+P +R+ I+ + + + +VATD
Sbjct: 244 NFY-GIVFCQTKKETRELGRRLRARGYKADALNGDIPQHKRESILRNFRKGYTRVLVATD 302
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+AARGID++ ++H++N IP+D ++HR GR+GR G +G AIT +P + ++ IE+
Sbjct: 303 VAARGIDVKDLTHVVNYSIPQDPEAYIHRTGRTGREGKRGKAITFVAPWESRKLKIIER 361
emb|CAA09195| (AJ010456) RNA helicase [Arabidopsis thaliana]
Length = 391
Score = 215 bits (543), Expect = 4e-55
Identities = 117/357 (32%), Positives = 196/357 (54%), Gaps = 3/357 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D K+ + + + FEKP+ +Q++ + +L GRD++ ++++G+GKT L + Q
Sbjct: 20 FNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQV 79
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+DT EVQA+I +P+RELATQ K Q ++ ++ +GG I+KLE
Sbjct: 80 VDTSSREVQALILSPTRELATQTEKTIQAIG-LHANIQAHACIGGNSVGEDIRKLEHGV- 137
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
HVV GTPGR+ D+IK +L ++DE+D L GF + + +Q+ +
Sbjct: 138 HVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLV 197
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNP 241
SAT+P ++ K++ PV + + + I+ + V+ + L L
Sbjct: 198 SATLPHEILEMTSKFMTEPVKILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTI 257
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
A+IF NTK +VD + + S+ V+ +HGD+P +ER IMN ++ D + ++ TD+
Sbjct: 258 TQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVW 317
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARGID++ VS +IN ++P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 318 ARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQ 374
gb|AAB63833.1| (AC002337) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 748
Score = 215 bits (543), Expect = 4e-55
Identities = 139/400 (34%), Positives = 213/400 (52%), Gaps = 20/400 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D F I ++ +EKPT +Q + +PIVLSGRD++G +KTGSGKT F+LP+
Sbjct: 230 FEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVH 289
Query: 63 IDTDLDEVQ------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
I D E+Q VI AP+RELA QI+ A++F+K LRVS GG K Q K+
Sbjct: 290 I-MDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYG-LRVSAVYGGMSKHEQFKE 347
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
L++ +V+ TPGR+ D++K AL + A+ V+DEAD D+GF V I
Sbjct: 348 LKAGC-EIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPD 406
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWL--VSTKGSSHNQLLLQ 234
Q L+FSAT+P K++ ++ L +P+ + + ++ I + + + LL +
Sbjct: 407 RQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEK 466
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L + ++FA+ K VD+I LT N KVA +HGD R + K+ +
Sbjct: 467 LPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHV 526
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNG-LQGTAITLYSPSD---- 349
++ATD+AARG+DI+ + ++N +I KD+ VHR+GR+GR G G A TL + +
Sbjct: 527 LIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFA 586
Query: 350 DSSIREIEKMGVTFQPK----AIKDGEIVDSYDRDRREKR 385
+ + G P+ A+KDG D + K+
Sbjct: 587 GELVNSLVAAGQNVPPELTDLAMKDGRFKSKRDGRKGGKK 626
sp|P42305|DEAD_BACSU PROBABLE ATP-DEPENDENT RNA HELICASE DEAD >gi|665989|dbj|BAA11693|
(D83026) homologous to ATP dependent RNA helicase DeaD
of E. coli; hypothetical [Bacillus subtilis]
>gi|2636457|emb|CAB15947| (Z99124) ATP-dependent RNA
helicase [Bacillus subtilis]
Length = 479
Score = 215 bits (541), Expect = 8e-55
Identities = 120/357 (33%), Positives = 201/357 (55%), Gaps = 4/357 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F ++ I + LE + + +PT+VQ+ +IP L +DLV +S+TGSGKT +F +P+ +
Sbjct: 4 FKNYQISHDILRALEGLGYTEPTKVQQSVIPAALERKDLVVKSQTGSGKTASFGIPLCEL 63
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRV-SNFVGGTDKARQIKKLESSQ 121
+ D ++ QA+I P+RELA Q+ ++ T + R+ + V G + K +
Sbjct: 64 ANWDENKPQALILTPTRELAVQV---KEDITNIGRFKRIKATAVFGKSSFDKQKAELKQK 120
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
H+V+GTPGR+ D I+ L + + V+DEAD L+MGF+ V+ I ++
Sbjct: 121 SHIVVGTPGRVLDHIEKGTLPLDRLSYLVIDEADEMLNMGFIEQVEAIIKHLPTERTTML 180
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
FSAT+PQ ++ ++Y+ NP ++ + + IE+ ++ + + LL + NP
Sbjct: 181 FSATLPQDIEKLSRQYMQNPEHIEVKAAGLTTRNIEHAVIQVREENKFSLLKDVLMTENP 240
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
+IF TK V+ + L G KIHG + +R +MN K +Y+Y+VATD+A
Sbjct: 241 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVA 300
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARGIDIE +S +IN ++P + +VHR GR+GR G +G AI+ + + + +IE+
Sbjct: 301 ARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEE 357
gb|AAD38596.1|AF145621_1 (AF145621) eukaryotic initiation factor-4a [Drosophila
melanogaster]
Length = 403
Score = 212 bits (534), Expect = 5e-54
Identities = 118/360 (32%), Positives = 205/360 (56%), Gaps = 9/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N ++ + + + FEKP+ +Q++ I + GRD++ ++++G+GKT TF + I Q+
Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 91
Query: 63 IDTDLDEVQAVITAPSRELATQIYK---AAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
IDT + E QA+I AP+RELATQI + A E+ KV+ +GGT+ + LES
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHA----CIGGTNVREDARILES 147
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
HVV+GTPGR++D+I L FV+DEAD L GF + + VQ+
Sbjct: 148 GC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQV 206
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ-LLLQLTKA 238
++ SAT+P + + ++ +PV + + + + I+ + V+ K + L L
Sbjct: 207 ILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDT 266
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
+ ++IF NT+ +VD + ++ + V+ +HGD+ R+R+ IM ++ + ++ T
Sbjct: 267 LSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITT 326
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +++IE+
Sbjct: 327 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQ 386
pir||S00986 translation initiation factor eIF-4A I - mouse
Length = 407
Score = 211 bits (532), Expect = 9e-54
Identities = 113/358 (31%), Positives = 198/358 (54%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 35 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ DL QA++ AP+RELA QI K + D + S +GGT+ +++KL+
Sbjct: 95 IELDLKATQALVLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQME 151
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+VIGTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 152 APHIVIGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 211
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 212 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 271
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 272 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 389
sp|Q58083|Y669_METJA PUTATIVE ATP-DEPENDENT RNA HELICASE MJ0669 >gi|2127878|pir||E64383
eIF-4A family probable ATP-dependent RNA helicase
homolog - Methanococcus jannaschii >gi|1591383 (U67514)
ATP-dependent RNA helicase, DEAD-family (deaD)
[Methanococcus jannaschii]
Length = 367
Score = 210 bits (530), Expect = 1e-53
Identities = 117/359 (32%), Positives = 208/359 (57%), Gaps = 10/359 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGR-DLVGESKTGSGKTHTFLLPI 59
M F + N D I + N FEKPT++Q K+IP+ L+ ++V +++TGSGKT +F +P+
Sbjct: 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPL 65
Query: 60 FQKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ ++ + + ++A+I P+RELA Q+ + K N L+++ GG QIK L++
Sbjct: 66 IELVNEN-NGIEAIILTPTRELAIQVADEIESL-KGNKNLKIAKIYGGKAIYPQIKALKN 123
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
+ ++V+GTPGRI D I L + F++DEAD L+MGF+ DV++I ++ K ++
Sbjct: 124 A--NIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI 181
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
L+FSAT+P+++ KKY+ + K I+ IE V + + L +L K
Sbjct: 182 LLFSATMPREILNLAKKYMGDYSFIKAK----INANIEQSYVEVNENERFEALCRLLK-N 236
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
+ ++F TK ++ L G K IHGD+ +R++++ K + ++ATD
Sbjct: 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 296
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ +RGID+ ++ +IN +P++ ++HR+GR+GR G +G AI++ + + +R IE+
Sbjct: 297 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIER 355
sp|P29562|IF41_RABIT EUKARYOTIC INITIATION FACTOR 4A-I (EIF-4A-I) >gi|109295|pir||S13269
initiation factor eIF-4A - rabbit
Length = 394
Score = 210 bits (530), Expect = 1e-53
Identities = 111/358 (31%), Positives = 198/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 22 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 81
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ DL QA++ AP+RELA QI K + D + S +GGT+ +++KL+
Sbjct: 82 IELDLKATQALVLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQME 138
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+++GTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 139 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 198
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 199 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 258
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 259 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 318
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 319 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 376
pir||FIMS4A translation initiation factor eIF-4A - mouse
>gi|50814|emb|CAA26842| (X03039) put. eIF-4A (aa 1-390)
[Mus musculus] >gi|50819|emb|CAA26845| (X03040) put.
eIF-4A (aa 1-390) [Mus musculus]
Length = 390
Score = 210 bits (530), Expect = 1e-53
Identities = 111/358 (31%), Positives = 198/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 18 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 77
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ DL QA++ AP+RELA QI K + D + S +GGT+ +++KL+
Sbjct: 78 IELDLKATQALVLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQME 134
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+++GTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 135 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 194
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 195 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 254
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 255 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 314
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 315 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 372
ref|NP_001407.1|| eukaryotic translation initiation factor 4A, isoform 1
>gi|417180|sp|P04765|IF41_HUMAN EUKARYOTIC INITIATION
FACTOR 4A-I (EIF-4A-I) >gi|422959|pir||S33681
translation initiation factor eIF-4A.I - human
>gi|219403|dbj|BAA02897| (D13748) eukaryotic initiation
factor 4AI [Homo sapiens] >gi|2943740|dbj|BAA25075.1|
(AB011595) eIF4A [Mus musculus] >gi|227238|prf||1617105B
initiation factor 4AI [Oryctolagus cuniculus]
Length = 406
Score = 210 bits (530), Expect = 1e-53
Identities = 111/358 (31%), Positives = 198/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ DL QA++ AP+RELA QI K + D + S +GGT+ +++KL+
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQME 150
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+++GTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
pir||JS0039 translation initiation factor eIF-4A - mouse >gi|556308 (L36611)
protein synthesis initiation factor 4A [Mus musculus]
Length = 406
Score = 210 bits (529), Expect = 2e-53
Identities = 111/358 (31%), Positives = 197/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 34 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ DL QA++ AP+RELA QI K + D + S +GGT+ +++KL+
Sbjct: 94 IELDLKATQALVLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQME 150
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+++GTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 151 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVV 210
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 211 LLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V +HGD+ +ER IM ++ + ++ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVCAMHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 388
emb|CAA73167| (Y12590) translation initiation factor eIF4A I [Xenopus laevis]
Length = 406
Score = 210 bits (528), Expect = 3e-53
Identities = 110/358 (30%), Positives = 198/358 (54%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 34 FDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQ 93
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ D+ QA++ AP+RELA QI K + D + +GGTD +++KL+S
Sbjct: 94 IELDMKATQALVLAPTRELAQQIQKVVMA---LGDYMGAGCHACIGGTDVRAEVQKLQSE 150
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+V+GTPGR+ D++ L FV+DEAD L GF + I Q++
Sbjct: 151 APHIVVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLSSNAQVV 210
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I + ++ + L L +
Sbjct: 211 LLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETL 270
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 271 TITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 330
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++++IE
Sbjct: 331 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEDDKRTLKDIE 388
emb|CAA40268| (X56953) protein synthesis initiation factor 4A [Mus musculus]
Length = 408
Score = 210 bits (528), Expect = 3e-53
Identities = 110/358 (30%), Positives = 201/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N K+ + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 36 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 95
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
++ + E QA++ AP+RELA QI K + D + + +GGT+ +++KL++
Sbjct: 96 LEIEFKETQALVLAPTRELAQQIQKV---ILALGDYMGATCHACIGGTNVRNEMQKLQAE 152
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+V+GTPGR+ D++ L FV+DEAD L GF + +I +Q++
Sbjct: 153 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 212
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I+ + ++ + L L +
Sbjct: 213 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 272
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 273 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 332
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +R+IE
Sbjct: 333 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 390
sp|P10630|IF42_MOUSE EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II)
>gi|90966|pir||S00985 translation initiation factor
eIF-4A II - mouse >gi|673434|emb|CAA40269| (X56953)
protein synthesis initiation factor 4A [Mus musculus]
>gi|227239|prf||1617105C initiation factor 4AII
[Oryctolagus cuniculus]
Length = 407
Score = 210 bits (528), Expect = 3e-53
Identities = 110/358 (30%), Positives = 201/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N K+ + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
++ + E QA++ AP+RELA QI K + D + + +GGT+ +++KL++
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKV---ILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+V+GTPGR+ D++ L FV+DEAD L GF + +I +Q++
Sbjct: 152 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I+ + ++ + L L +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +R+IE
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 389
dbj|BAA04879| (D21853) KIAA0111 [Homo sapiens]
Length = 411
Score = 208 bits (524), Expect = 7e-53
Identities = 114/341 (33%), Positives = 191/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I ++ GRD++ +S++G+GKT TF + + Q +D + E QA+I AP+RE
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 117
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D + V +GGT+ I+KL+ Q HVV GTPGR+ D+I+
Sbjct: 118 LAVQIQKG---LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRR 173
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L V+DEAD L+ GF + + Q+++ SAT+P ++ K++
Sbjct: 174 RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFM 233
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P+ + + + I+ + V+ + L L A+IF NTK +VD +
Sbjct: 234 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 293
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ +HGD+P +ER+ IM ++ + +++TD+ ARG+D+ VS IIN +
Sbjct: 294 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 353
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 354 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 394
sp|P47943|IF4A_SCHPO EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|1321961|emb|CAA56772|
(X80796) translation initiation factor eIF-4A
[Schizosaccharomyces pombe] >gi|2222814 (L40627) cell
cycle control protein eIF-4A [Schizosaccharomyces pombe]
>gi|6318257|emb|CAB60237.1| (AL132828) eukaryotic
initiation factor 4a [Schizosaccharomyces pombe]
Length = 392
Score = 208 bits (524), Expect = 7e-53
Identities = 118/359 (32%), Positives = 197/359 (54%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N K + + + FE+P+ +Q++ I +L RD++ ++++G+GKT TF + + QK
Sbjct: 21 FDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQK 80
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
IDT L + QA+I AP+RELA QI K + D + V +GGT + L++
Sbjct: 81 IDTSLKQCQALILAPTRELAQQIQKVV---VALGDLMNVECHACIGGTLVRDDMAALQAG 137
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+HD+I+ AL FV+DEAD L GF + I Q++
Sbjct: 138 V-HVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQLLPPTAQVV 196
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+PQ + K++ +P+ + + + I+ + V+ + L L +
Sbjct: 197 LLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLYETV 256
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + LT V+ +HGD+ +R +M+ + + ++ TD
Sbjct: 257 TVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTD 316
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G +I + D +REIE+
Sbjct: 317 LLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQ 375
ref|NP_001958.1|| eukaryotic translation initiation factor 4A, isoform 2
>gi|2500513|sp|Q14240|IF42_HUMAN EUKARYOTIC INITIATION
FACTOR 4A-II (EIF-4A-II) >gi|485388|dbj|BAA06336|
(D30655) eukaryotic initiation factor 4AII [Homo
sapiens] >gi|1195610|bbs|172671 (S79942) protein
synthesis initiation factor 4A-II homolog=EIF4A2 [human,
fetal lung tissue, Peptide, 407 aa] [Homo sapiens]
Length = 407
Score = 208 bits (524), Expect = 7e-53
Identities = 110/358 (30%), Positives = 200/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N K+ + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
++ + E QA++ AP+RELA QI K + D + + +GGT+ +++KL++
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKV---ILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+V+GTPGR+ D++ L FV+DEAD L GF + +I +Q++
Sbjct: 152 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 211
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
SAT+P + KK++ +P+ + + + + I+ + ++ + L L +
Sbjct: 212 FASATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +R+IE
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIE 389
sp|Q02748|IF4A_DROME EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|418925|pir||S30278
translation initiation factor eIF-4A - fruit fly
(Drosophila melanogaster) >gi|311997|emb|CAA48790|
(X69045) eukaryotic translation initiation factor 4A
(eIF-4A) [Drosophila melanogaster]
Length = 402
Score = 208 bits (523), Expect = 1e-52
Identities = 118/360 (32%), Positives = 206/360 (56%), Gaps = 10/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N ++ + + + FEKP+ +Q++ I + GRD++ ++++G+GKT TF + I Q+
Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 91
Query: 63 IDTDLDEVQAVITAPSRELATQIYK---AAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
IDT + E QA+I AP+RELATQI + A E+ KV+ +GGT+ + LES
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHA----CIGGTNVREDARILES 147
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
HVV+GTPGR++D+I + L FV+DEAD L GF + + VQ+
Sbjct: 148 GC-HVVVGTPGRVYDMI-NRKLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQV 205
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ-LLLQLTKA 238
++ SAT+P + + ++ +PV + + + + I+ + V+ K + L L
Sbjct: 206 ILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDT 265
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
+ ++IF NT+ +VD + ++ + V+ +HGD+ R+R+ IM ++ + ++ T
Sbjct: 266 LSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITT 325
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +++IE+
Sbjct: 326 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQ 385
emb|CAA15107| (AJ235272) PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE (rhlE)
[Rickettsia prowazekii]
Length = 407
Score = 207 bits (522), Expect = 1e-52
Identities = 126/358 (35%), Positives = 200/358 (55%), Gaps = 11/358 (3%)
Query: 5 DFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKID 64
+FN + LE + +PTE+Q++ IP+ +SG D++ S+TGSGKT +LLP+ ID
Sbjct: 3 NFNLSKELIIALETMNITEPTEIQKQSIPVAMSGADILASSQTGSGKTLAYLLPL---ID 59
Query: 65 TDL-DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPH 123
+ ++ A+I P+RELATQI+ + T K+ + +GG +Q +L+ + P
Sbjct: 60 AFIKNKTTALILVPTRELATQIHSTLNKVTTAY-KMNSAVLIGGEPMFKQFMQLKKN-PK 117
Query: 124 VVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183
V+IGTPGRI + + +L + V+DE D LDMG +++I ++ Q+L+FS
Sbjct: 118 VIIGTPGRIIEHLNRRSLKIEHIGIIVLDEMDRMLDMGMKEQLEEINKFLPEKRQVLMFS 177
Query: 184 ATIPQKLQPFLKKYLHNPV--MQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
AT+P+ + +KYL+NPV M NK E VS K ++L QL
Sbjct: 178 ATMPKHIIAVSQKYLNNPVRIMVGATNKAAAEIKQELMHVSNK-EKFSELTKQLGNRVGS 236
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
+IF TK D + L K IHGD+ +R+R++ S + L+++ +VATD+A
Sbjct: 237 --VIIFVKTKRSADQLAKMLKYENHKAEAIHGDLSQSQRERVILSFRKLNHRIMVATDVA 294
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
ARG+DI H+IN ++P ++HR+GR+GR G G A++ SP D R I+++
Sbjct: 295 ARGLDIPHTQHVINYDLPMCPEDYLHRIGRTGRAGAIGHALSFISPDDVVRWRAIDRL 352
gi|2443810 (AF020432) eukaryotic translation initiation factor XeIF-4AIII
[Xenopus laevis]
Length = 414
Score = 207 bits (522), Expect = 1e-52
Identities = 114/341 (33%), Positives = 190/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q+K I ++ GRD++ +S++G+GKT TF + + Q +D + E QA+I AP++E
Sbjct: 61 FEKPSAIQQKAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQIRETQALILAPTKE 120
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D + V +GGT+ I+KL+ Q HVV GTPGR+ D+I+
Sbjct: 121 LARQIQKV---LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRR 176
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L V+DEAD L+ GF + + Q+ + SAT+P ++ K++
Sbjct: 177 RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFM 236
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P+ + + + I+ + V+ + L L A+IF NTK +VD +
Sbjct: 237 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 296
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ +HGD+P +ER+ IM ++ + +++TD+ ARG+D+ VS IIN +
Sbjct: 297 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 356
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 357 LPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQ 397
sp|P38919|IF4N_HUMAN EUKARYOTIC INITIATION FACTOR 4A-LIKE NUK-34 (HA0659)
>gi|631472|pir||S45142 translation initiation factor
eIF-4A2 homolog - human >gi|496902|emb|CAA56074|
(X79538) translation initiation factor [Homo sapiens]
Length = 411
Score = 207 bits (521), Expect = 2e-52
Identities = 113/341 (33%), Positives = 191/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I ++ GRD++ +S++G+GKT TF + + Q +D + E QA+I AP+RE
Sbjct: 58 FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 117
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D + V +GGT+ I+KL+ Q HVV GTPGR+ D+I+
Sbjct: 118 LAVQIQKG---LLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ-HVVAGTPGRVFDMIRR 173
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L V+DEAD L+ GF + + Q+++ SAT+P ++ K++
Sbjct: 174 RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPSATQVVLISATLPHEILEMTNKFM 233
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P+ + + + I+ + V+ + L L A+IF NTK +VD +
Sbjct: 234 TDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWL 293
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ +HGD+P +ER+ IM ++ + +++TD+ ARG+D+ VS IIN +
Sbjct: 294 TEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYD 353
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P + ++HR+GRSG+ G +G AI D +R+IE+
Sbjct: 354 LPNNRELYIHRIGRSGQYGRKGVAINFVKNDDIRILRDIEQ 394
sp|P25888|RHLE_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RHLE >gi|560801 (L02123)
ATP-dependent RNA helicase [Escherichia coli]
>gi|1651360|dbj|BAA35463| (D90717) Putative
ATP-dependent RNA helicase RhlE. [Escherichia coli]
>gi|1787016 (AE000182) putative ATP-dependent RNA
helicase [Escherichia coli] >gi|4062355|dbj|BAA35457|
(D90716) Putative ATP-dependent RNA helicase RhlE.
[Escherichia coli]
Length = 454
Score = 207 bits (521), Expect = 2e-52
Identities = 121/365 (33%), Positives = 195/365 (53%), Gaps = 8/365 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F I + + + +PT +Q++ IP VL GRDL+ ++TG+GKT F LP+
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 61 QKIDTDLDE------VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
Q + T V+A+I P+RELA QI + ++++K + +R GG Q+
Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLN-IRSLVVFGGVSINPQM 119
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174
KL V++ TPGR+ DL NA+ + V+DEAD LDMGF+ D+ ++ +
Sbjct: 120 MKLRGGVD-VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLP 178
Query: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234
+ Q L+FSAT ++ +K LHNP+ ++A + SD + + +LL
Sbjct: 179 AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSH 238
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
+ N ++F TK + + L +G++ A IHG+ R R + K+ D +
Sbjct: 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRV 298
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354
+VATDIAARG+DIE + H++N E+P +VHR+GR+GR G A++L + +R
Sbjct: 299 LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358
Query: 355 EIEKM 359
+IEK+
Sbjct: 359 DIEKL 363
emb|CAA26843| (X03039) put. altern. eIF-4A (aa 1-370) [Mus musculus]
>gi|50820|emb|CAA26846| (X03040) put. altern. eIF-4A (aa
1-370) [Mus musculus]
Length = 370
Score = 206 bits (520), Expect = 2e-52
Identities = 108/340 (31%), Positives = 191/340 (55%), Gaps = 6/340 (1%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+I+ DL QA++ AP+RE
Sbjct: 16 FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 75
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D + S +GGT+ +++KL+ PH+++GTPGR+ D++
Sbjct: 76 LAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR 132
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
L FV+DEAD L GF + I Q+++ SAT+P + KK++
Sbjct: 133 RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFM 192
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P+ + + + + I + ++ + L L + A+IF NT+ +VD +
Sbjct: 193 RDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWL 252
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ + V+ +HGD+ +ER IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 253 TEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 312
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+P + ++HR+GR GR G +G AI + + D ++R+IE
Sbjct: 313 LPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIE 352
ref|NP_010304.1|FAL1| DEAD-box protein, putative RNA helicase; Fal1p
>gi|2500524|sp|Q12099|FAL1_YEAST PROBABLE ATP-DEPENDENT
RNA HELICASE FAL1 >gi|1078511|pir||S54644 hypothetical
protein YDR021w - yeast (Saccharomyces cerevisiae)
>gi|840874|emb|CAA89846| (Z49770) unknown [Saccharomyces
cerevisiae] >gi|1216228|emb|CAA65213| (X95966)
orf:PZC399 [Saccharomyces cerevisiae]
>gi|1431450|emb|CAA98842| (Z74317) ORF YDR021w
[Saccharomyces cerevisiae]
Length = 399
Score = 205 bits (517), Expect = 5e-52
Identities = 116/361 (32%), Positives = 201/361 (55%), Gaps = 8/361 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N KD + + + + FE P+ +Q + I ++SG+D++ ++++G+GKT TF + + Q
Sbjct: 25 FESMNLKDDLLRGIYSYGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQA 84
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV--GGTDKARQIKKLESS 120
ID ++QA+I +P+RELA+QI Q + D + V+ F GG +KK++
Sbjct: 85 IDLRKKDLQALILSPTRELASQI---GQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKH 141
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLD--MGFLADVDQIASSFGKRVQ 178
V GTPGR+ D+IK L V+DEAD L +GF + I + K Q
Sbjct: 142 GCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLDEADELLSETLGFKQQIYDIFAKLPKNCQ 201
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTK 237
++V SAT+ + + +K++++PV + + + I+ ++V+ K L +
Sbjct: 202 VVVVSATMNKDILEVTRKFMNDPVKILVKRDEISLEGIKQYVVNVDKEEWKFDTLCDIYD 261
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
+ +IF NTK +VD + L + V +HGD+ ER ++MN + + +++
Sbjct: 262 SLTITQCVIFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TD+ ARGID++ VS +IN ++P+ + ++HR+GRSGR G +G AI + +D + +REIE
Sbjct: 322 TDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAKLREIE 381
Query: 358 K 358
K
Sbjct: 382 K 382
prf||1912301A initiation factor eIF-4A [Drosophila melanogaster]
Length = 402
Score = 205 bits (517), Expect = 5e-52
Identities = 117/360 (32%), Positives = 205/360 (56%), Gaps = 10/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N ++ + + + FEKP+ +Q++ I + GRD++ ++++G+GKT TF + I Q+
Sbjct: 32 FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQSGTGKTATFSIAILQQ 91
Query: 63 IDTDLDEVQAVITAPSRELATQIYK---AAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
IDT + E QA+I AP+RELATQI + A E+ KV+ +GGT+ + LES
Sbjct: 92 IDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHA----CIGGTNVREDARILES 147
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
HVV+GTPGR++D+I + L FV+DEAD L GF + + VQ+
Sbjct: 148 GC-HVVVGTPGRVYDMI-NRKLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQV 205
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ-LLLQLTKA 238
++ SAT+P + + ++ +PV + + + + I+ + V+ K + L L
Sbjct: 206 ILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDT 265
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
+ ++IF T+ +VD + ++ + V+ +HGD+ R+R+ IM ++ + ++ T
Sbjct: 266 LSITQSVIFCTTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITT 325
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +++IE+
Sbjct: 326 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQ 385
emb|CAA31025| (X12507) initiation factor 4AII (AA 1 - 407) [Mus musculus]
Length = 407
Score = 205 bits (517), Expect = 5e-52
Identities = 109/358 (30%), Positives = 199/358 (55%), Gaps = 6/358 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D N K+ + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 35 FDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQ 94
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
++ + E QA++ AP+RELA QI K + D + + +GGT+ +++KL++
Sbjct: 95 LEIEFKETQALVLAPTRELAQQIQKV---ILALGDYMGATCHACIGGTNVRNEMQKLQAE 151
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
PH+V+GTPGR+ D++ L FV+DEAD L GF + + +Q++
Sbjct: 152 APHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYERVQKLNTSIQVV 211
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P + KK++ +P+ + + + + I+ + ++ + L L +
Sbjct: 212 LLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETL 271
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + ++ TD
Sbjct: 272 TITQAVIFLNTRRKVDWLTEKMQAIYFTVSALHGDMDQKERDVIMREFRSGSSRVLITTD 331
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +R IE
Sbjct: 332 LLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRHIE 389
emb|CAA72735| (Y12007) RNA helicase (DEAD box) [Danio rerio]
Length = 700
Score = 205 bits (516), Expect = 6e-52
Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 16/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F + D +++ + + KPT VQ+ IPI+ +GRDL+ ++TGSGKT FLLPI
Sbjct: 261 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 320
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
Q+ TD + E +A+I AP+REL QIY A++F +R GG +
Sbjct: 321 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFA-YGTCVRPVVVYGGINTG 379
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
I+++ +V+ TPGR+HDLI + + V+DEAD LDMGF ++ ++ +
Sbjct: 380 YTIREVLKGC-NVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVA 438
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVISDTIENWLVSTKGS 226
S G ++ Q L+FSAT P+ +Q +L + + + +E +V
Sbjct: 439 SPGMPSKEKRQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTIVQVDQY 498
Query: 227 SHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
S LL+L +AT M+F TK D I FL + IHGD RER++ ++
Sbjct: 499 SKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 558
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+ +VAT +AARG+DIE V H++N ++P + +VHR+GR+GR G G A++ ++
Sbjct: 559 FRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 618
Query: 347 PSDDSSI 353
P D+ +
Sbjct: 619 PESDTPL 625
dbj|BAA22326| (D86417) YfmL [Bacillus subtilis] >gi|2633067|emb|CAB12572|
(Z99108) similar to RNA helicase [Bacillus subtilis]
Length = 376
Score = 205 bits (516), Expect = 6e-52
Identities = 111/368 (30%), Positives = 211/368 (57%), Gaps = 5/368 (1%)
Query: 7 NFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTD 66
N + +I + F+KPT VQE+ +++ G+D++ ES TG+GKT + LP+ ++I +
Sbjct: 10 NAQSFIQENWNASGFQKPTPVQEQAAQLIMDGKDVIAESPTGTGKTLAYALPVLERIKPE 69
Query: 67 LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
QAVI APSREL QI++ Q++ K +LR ++ +GG + +Q++KL+ PH+++
Sbjct: 70 QKHPQAVILAPSRELVMQIFQVIQDW-KAGSELRAASLIGGANVKKQVEKLK-KHPHIIV 127
Query: 127 GTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATI 186
GTPGR+ +LIK+ L +H T V+DE D + + QI + + Q+L FSAT+
Sbjct: 128 GTPGRVFELIKAKKLKMHEVKTIVLDETDQLVLPEHRETMKQIIKTTLRDRQLLCFSATL 187
Query: 187 PQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMI 246
++ + L++ P + K+ + +++ + +LL +L++ A++
Sbjct: 188 KKETEDVLRELAQEPEVLKVQRSKAEAGKVKHQYLICDQRDKVKLLQKLSRLEG-MQALV 246
Query: 247 FANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGID 306
F G + L + +++ +H + ER +I+ + ++ ++ ++ATDIAARG+D
Sbjct: 247 FVRDIGNLSVYAEKLAYHHVELGVLHSEAKKMERAKIIATFEDGEFPLLLATDIAARGLD 306
Query: 307 IEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMGVTFQP 365
IE + ++I+ +IP D +VHR GR+GR G +G ++L + ++S ++++ +K+GV
Sbjct: 307 IENLPYVIHADIP-DEDGYVHRSGRTGRAGKEGNVLSLVTKLEESKLKKMAKKLGVELSE 365
Query: 366 KAIKDGEI 373
G++
Sbjct: 366 AVYAGGKL 373
sp|Q25225|IF4A_LEIBR PROBABLE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|643070
(U19888) ribosomal DEAD box protein [Leishmania
braziliensis]
Length = 403
Score = 205 bits (516), Expect = 6e-52
Identities = 110/360 (30%), Positives = 205/360 (56%), Gaps = 9/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + + FEKP+ +Q++ I G D++ ++++G+GKT F + + Q+
Sbjct: 28 FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVS-----NFVGGTDKARQIKKL 117
+D + +Q ++ +P+RELA Q A+ +++ + L S FVGGT ++KL
Sbjct: 88 LDFRHNLIQGLVLSPTRELALQ---TAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKL 144
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
++ V +GTPGR+ D+IK AL + V+DEAD L GF + +I K +
Sbjct: 145 QAGVV-VAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDI 203
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237
Q+ +FSAT+P+++ KK++ +PV + +++ + I+ + ++ + L+ L +
Sbjct: 204 QVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMDLYE 263
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
+ ++IFANT+ +VD I L + V+ +H ++P +R+R+MN+ ++ + +V
Sbjct: 264 TVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVT 323
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TD+ ARGID+ V+ +IN ++P + ++HR+GR GR G++G AI + D + EIE
Sbjct: 324 TDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGVKGVAINFVTEKDVELLHEIE 383
emb|CAA73168| (Y12591) translation initiation factor eIF4A II [Xenopus laevis]
Length = 413
Score = 205 bits (515), Expect = 8e-52
Identities = 113/362 (31%), Positives = 202/362 (55%), Gaps = 13/362 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + + + FEKP+ +Q++ I + G D++ ++++G+GKT TF + I Q+
Sbjct: 40 FDDMSLSESLLRGIYAYGFEKPSAIQQRAIMPCIKGYDVIAQAQSGTGKTATFAISILQQ 99
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
I+ D+ QA++ AP+RELA QI K + D + S +GGT+ +++KL+S
Sbjct: 100 IELDMKATQALMLAPTRELAQQIQKVVMA---LGDYMGASCHACIGGTNVRAEVQKLQSE 156
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK----R 176
PH+++GTPGR+ D++ L FV+DEAD L GF DQI F K
Sbjct: 157 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFK---DQIYDIFQKVLSMN 213
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQL 235
Q+++ SAT+P + KK++ +P+ + + + + I + ++ + L L
Sbjct: 214 AQVVLLSATMPADVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 273
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
+ A+IF NT+ +VD + + + V+ +HGD+ +ER IM ++ + +
Sbjct: 274 YETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVL 333
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
+ TD+ ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + + D ++++
Sbjct: 334 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGWKGVAINMVTEDDKRTLKD 393
Query: 356 IE 357
IE
Sbjct: 394 IE 395
gb|AAC24685.1| (AE001274) EIF-4A; L3162.6 [Leishmania major]
>gi|3002484|gb|AAC24684.1| (AE001274) EIF-4A; L3162.5
[Leishmania major]
Length = 403
Score = 204 bits (513), Expect = 1e-51
Identities = 110/360 (30%), Positives = 205/360 (56%), Gaps = 9/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + + FEKP+ +Q++ I G D++ ++++G+GKT F + + Q+
Sbjct: 28 FDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQR 87
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSN-----FVGGTDKARQIKKL 117
+D + +Q ++ +P+RELA Q A+ +++ + L S+ FVGGT ++KL
Sbjct: 88 LDFRHNLIQGLVLSPTRELALQ---TAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKL 144
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
++ V +GTPGR+ D+IK AL + V+DEAD L GF + +I K +
Sbjct: 145 QAGVI-VAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRFLPKDI 203
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237
Q+ +FSAT+P+++ KK++ +PV + +++ + I+ + ++ + L+ L +
Sbjct: 204 QVALFSATMPEEVLELTKKFMRDPVRILVKRESLTLEGIKQFFIAVEEEHKLDTLMDLYE 263
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
+ ++IFANT+ +VD I L + V+ +H ++P +R+R+MN+ ++ + +V
Sbjct: 264 TVSIAQSVIFANTRRKVDWIAEKLNQSNHTVSSMHAEMPKSDRERVMNTFRSGSSRVLVT 323
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TD+ ARGID+ V+ +IN ++P + ++HR+GR GR G +G AI + D + EIE
Sbjct: 324 TDLVARGIDVHHVNIVINFDLPTNKENYLHRIGRGGRYGRKGVAINFVTEKDVELLHEIE 383
dbj|BAA22535| (AB005147) vas [Danio rerio]
Length = 716
Score = 204 bits (513), Expect = 1e-51
Identities = 125/367 (34%), Positives = 196/367 (53%), Gaps = 16/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F + D +++ + + KPT VQ+ IPI+ +GRDL+ ++TGSGKT FLLPI
Sbjct: 277 MTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPIL 336
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
Q+ TD + E +A+I AP+REL QIY A++F +R GG +
Sbjct: 337 QRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFA-YGTCVRPVVVYGGINTG 395
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
I+++ +V+ TPGR+HDLI + + V+DEAD LDMGF ++ ++ +
Sbjct: 396 YTIREVLKGC-NVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRMLDMGFEPEMRKLVA 454
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVISDTIENWLVSTKGS 226
S G + Q L+FSAT P+ +Q +L + + + +E +V
Sbjct: 455 SPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSDVEQTVVQVDQY 514
Query: 227 SHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
S LL+L +AT M+F TK D I FL + IHGD RER++ ++
Sbjct: 515 SKRDQLLELLRATGNERTMVFVETKRSADFIATFLCQEKISTTSIHGDREQREREKALSD 574
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+ +VAT +AARG+DIE V H++N ++P + +VHR+GR+GR G G A++ ++
Sbjct: 575 FRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTGRCGNTGRAVSFFN 634
Query: 347 PSDDSSI 353
P D+ +
Sbjct: 635 PESDTPL 641
gb|AAD30651.1|AC006085_24 (AC006085) RNA helicase [Arabidopsis thaliana]
Length = 392
Score = 203 bits (512), Expect = 2e-51
Identities = 110/357 (30%), Positives = 196/357 (54%), Gaps = 3/357 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D D + + + + ++KP+E+Q++ + +L GRD++ ++++G+GKT + + Q
Sbjct: 24 FDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQI 83
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
++ +VQ ++ +PSRELA+Q K Q + ++ +GG IKKLE
Sbjct: 84 VNISSRKVQVLVLSPSRELASQTEKTIQAIG-AHTNIQAHACIGGKSIGEDIKKLERGV- 141
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
H V GTPGR++D+IK +L V+DE+D L G + + + +Q+ +
Sbjct: 142 HAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLI 201
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNP 241
SAT+PQ++ +K++ +PV + + + I+ + V K L L
Sbjct: 202 SATLPQEILEMTEKFMTDPVRILVKPDELTLEGIKQYYVDVDKEEWKFDTLCDLYGRLTI 261
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
A+IF NT+ +VD + + S+ V+ +HGD +ER IMN ++ + ++A+D+
Sbjct: 262 NQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIMNQFRSFKSRVLIASDVW 321
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARGID++ VSH+IN +IP + ++HR+GR+GR G +G AI SD +++IE+
Sbjct: 322 ARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINFVKSSDMKDLKDIER 378
dbj|BAA31233| (D89592) rhlE [Vibrio alginolyticus]
Length = 411
Score = 203 bits (511), Expect = 2e-51
Identities = 120/361 (33%), Positives = 190/361 (52%), Gaps = 6/361 (1%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F+ I ++ + +EKPT +Q+K IPIVL G +L+ ++TG+GKT +F+LPI
Sbjct: 1 MPFSKLGLSASITDAVKALGYEKPTSIQQKAIPIVLRGSNLIAAAQTGTGKTASFVLPIL 60
Query: 61 QKIDTDLDE----VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
+K+ + +A+I P+RELA Q++++ + + K N LR GG + A Q +
Sbjct: 61 EKLSQGETQRKKRARAIILTPTRELALQVHQSIEAYGK-NLPLRSMAMFGGVEYAPQKQA 119
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
L +V+ TPGR+ DL A+ V+DEAD LDMGF+ +D+I +
Sbjct: 120 LIEGVD-IVVSTPGRLIDLYGQRAIHFDEVEMLVLDEADKMLDMGFIDSIDKIIDCMPED 178
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLT 236
VQ L+FSAT+ ++ K + +P IA + I+ W+ + + LL +
Sbjct: 179 VQSLLFSATLSNPVRDLAKNAIVDPEEITIAKHSASKSNIKQWITTVDKDMKSSLLSHML 238
Query: 237 KATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVV 296
+ +IF TK + L G+ H R R+ ++ K + QY+V
Sbjct: 239 NENDWSQVLIFIETKHGAAKLVSQLEKRGIVAEAFHSGRNQRVRQELIEKFKAGEIQYLV 298
Query: 297 ATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI 356
AT +AARGIDI+ + +IN ++P +VHR+GR+GR G QG AI+L S D ++ I
Sbjct: 299 ATGVAARGIDIDNLPVVINYDLPFPADEYVHRIGRTGRAGAQGEAISLVSKDDFKNLCMI 358
Query: 357 E 357
E
Sbjct: 359 E 359
gi|2150025 (AF001211) translation initiation factor [Cryptosporidium parvum]
>gi|2155304 (AF001378) translation initiation factor
[Cryptosporidium parvum]
Length = 405
Score = 203 bits (511), Expect = 2e-51
Identities = 112/339 (33%), Positives = 188/339 (55%), Gaps = 3/339 (0%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I +L G D +G++++G+GKT TF++ QKID L+ Q ++ AP+RE
Sbjct: 51 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRE 110
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA QI K A + LR VGGT + KL+S H+V+GTPGR+ D++
Sbjct: 111 LAQQIQKVALALGDYCE-LRCHACVGGTSVRDDMNKLKSGV-HMVVGTPGRVFDMLDKGY 168
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHN 200
L V F++DEAD L GF + I + VQ+ +FSAT+P ++ +++ +
Sbjct: 169 LRVDNLKLFILDEADEMLSRGFKVQIHDIFKKLPQDVQVALFSATMPNEILHLTTQFMRD 228
Query: 201 PVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHH 259
P + + + + I + V K L+ L + A+I+ NT+ RVD +
Sbjct: 229 PKRILVKQEELTLEGIRQFYVGVEKDEWKMDTLIDLYETLTIVQAIIYCNTRRRVDQLTK 288
Query: 260 FLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIP 319
+ + +HGD+ ++R+ IM ++ + ++ TD+ ARGID++ VS +IN ++P
Sbjct: 289 QMRERDFTCSSMHGDMDQKDREVIMRQFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 348
Query: 320 KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
++HR+GRSGR G +G +I + D +R+IE+
Sbjct: 349 VSPETYIHRIGRSGRFGKKGVSINFVTDDDIVCLRDIER 387
dbj|BAA19572.1| (D86601) DEAD family RNA helicase; germ cell specific in Bombyx 5th
instar larva, a material factor [Bombyx mori]
Length = 601
Score = 203 bits (510), Expect = 3e-51
Identities = 118/365 (32%), Positives = 195/365 (53%), Gaps = 17/365 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N + Y+ + + KPT +Q+ IPI++SGRDL+G ++TGSGKT FL+PI
Sbjct: 182 FETANLRKYVLDNVLKAGYRKPTPIQKNAIPIIMSGRDLMGCAQTGSGKTAAFLVPIINM 241
Query: 63 IDTDLDEV---------QAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQ 113
+ D ++ Q +I +P+REL QI+ A++F+ L+V+ GGT Q
Sbjct: 242 LLQDPKDLISENGCAQPQVIIVSPTRELTLQIFNEARKFS-YGSVLKVAVAYGGTAVRHQ 300
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS-- 171
+ H+++ TPGR+HD ++ N + + V+DEAD LDMGF+ ++++
Sbjct: 301 GDNIARGC-HILVATPGRLHDFVERNRVSFGSVRFVVLDEADRMLDMGFMPSIEKMMLHP 359
Query: 172 ---SFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSH 228
KR Q L+FSAT P+ +Q ++L+N + + S +E +
Sbjct: 360 TMVETTKR-QTLMFSATFPEDIQHLAGRFLNNYLFVAVGIVGGASTDVEQIFIEVTKYEK 418
Query: 229 NQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIK 288
L QL + + ++F TK D I L+ L + IHGD RER+ + + K
Sbjct: 419 RNSLKQLIEENDGKRILVFVETKRNADFIAAMLSEQQLLTSSIHGDRMQREREEALQNFK 478
Query: 289 NLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPS 348
+ + +VAT +AARG+DI+ V ++N ++PK + +VHR+GR+GR G +G A++ Y
Sbjct: 479 SGKHCILVATAVAARGLDIKNVDIVVNYDLPKSIDEYVHRIGRTGRVGNRGKAVSFYDSD 538
Query: 349 DDSSI 353
D ++
Sbjct: 539 QDLAL 543
ref|NP_014287.1|DBP2| ATP-dependent RNA helicase of DEAD box family; Dbp2p
>gi|118284|sp|P24783|DBP2_YEAST P68-LIKE PROTEIN
>gi|83509|pir||S13757 RNA helicase DBP2 - yeast
(Saccharomyces cerevisiae) >gi|5272|emb|CAA36874|
(X52649) p68 protein [Saccharomyces cerevisiae]
>gi|1302034|emb|CAA95991| (Z71388) ORF YNL112w
[Saccharomyces cerevisiae]
Length = 546
Score = 202 bits (509), Expect = 4e-51
Identities = 121/357 (33%), Positives = 198/357 (54%), Gaps = 19/357 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + F DY+ ++ F+KPT +Q + P+ LSGRD+VG + TGSGKT ++ LP
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I+ D ++ AP+RELA QI +F + ++R + GG K++QI+ L
Sbjct: 175 INAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGH-SSRIRNTCVYGGVPKSQQIRDL 233
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
S +VI TPGR+ D+++ + V+DEAD LDMGF + +I
Sbjct: 234 -SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 292
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIA--------NKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P++++ YL++P+ ++ N T I + + ++ + + +
Sbjct: 293 QTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY- 351
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L+ N Y +IFA+TK DDI +L +G IHGD RER ++ +N
Sbjct: 352 ---LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRN 408
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+VATD+AARGID++G++++IN ++P ++ +VHR+GR+GR G GTAI+ ++
Sbjct: 409 GRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFT 465
ref|NP_012397.1|TIF2| translation initiation factor eIF4A; Tif2p
>gi|6322912|ref|NP_012985.1|TIF1| translation initiation
factor eIF4A; Tif1p >gi|124218|sp|P10081|IF4A_YEAST
EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) (STIMULATOR
FACTOR I 37 KD COMPONENT) (P37) >gi|72889|pir||FIBY1
translation initiation factor eIF-4A - yeast
(Saccharomyces cerevisiae) >gi|4621|emb|CAA31301|
(X12813) TIF1 gene product (AA 1 - 395) [Saccharomyces
cerevisiae] >gi|4623|emb|CAA31302| (X12814) TIF2 gene
product (AA 1 - 395) [Saccharomyces cerevisiae]
>gi|486521|emb|CAA82138| (Z28284) ORF YKR059w
[Saccharomyces cerevisiae] >gi|854559|emb|CAA60817|
(X87371) translation initiation factor [Saccharomyces
cerevisiae] >gi|1015544|emb|CAA89433| (Z49413) ORF
YJL138c [Saccharomyces cerevisiae]
Length = 395
Score = 202 bits (508), Expect = 6e-51
Identities = 111/358 (31%), Positives = 199/358 (55%), Gaps = 4/358 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF D + + + + FE+P+ +Q++ I ++ G D++ ++++G+GKT TF + Q
Sbjct: 23 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 82
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
+IDT + QA++ AP+RELA QI K D ++V +GGT + L +Q
Sbjct: 83 RIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLRDAQ 141
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
+V+GTPGR+ D I+ F++DEAD L GF + QI + Q+++
Sbjct: 142 --IVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 199
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATN 240
SAT+P + K++ NPV + + + I+ + V+ + + + L L + +
Sbjct: 200 LSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 259
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
A+IF NT+ +V+++ L ++ V+ I+ D+P +ER IM ++ + +++TD+
Sbjct: 260 VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 319
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D ++RE+EK
Sbjct: 320 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 377
gi|3323078 (AE001248) ATP-dependent RNA helicase [Treponema pallidum]
Length = 649
Score = 201 bits (506), Expect = 1e-50
Identities = 106/339 (31%), Positives = 188/339 (55%), Gaps = 3/339 (0%)
Query: 21 FEKPTEVQEKLIPIVLSG-RDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSR 79
F PT +Q IP +L+G +++ +++TG+GKT F LP+ Q++ + + A++ P+R
Sbjct: 66 FRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAAFGLPLIQELGSPCEHPGALVLVPTR 125
Query: 80 ELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSN 139
ELA Q+ ++ R+ GG A Q++ LE +++GT GR+ D I+
Sbjct: 126 ELAAQVASELSSL-RIQKIPRIHTVYGGVSIAEQLRNLEQGG-EIIVGTTGRVIDHIERG 183
Query: 140 ALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLH 199
+L + F++DEAD L+MGF+ D++ I S K ++L+FSAT+P+++ ++
Sbjct: 184 SLELSYLRYFILDEADEMLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMG 243
Query: 200 NPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHH 259
+ + + IE ++ + + + L++L ++ + ++F TK D +
Sbjct: 244 SYEVVEEVTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADTVAK 303
Query: 260 FLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIP 319
L VA +HGD+P +R++I+ + + +VATD+AARGIDIEG++H++N IP
Sbjct: 304 SLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGIDIEGITHVVNYSIP 363
Query: 320 KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D + HRVGR+GR G QG AI+ P + + + K
Sbjct: 364 HDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYLSK 402
sp|P41380|IF43_NICPL EUKARYOTIC INITIATION FACTOR 4A-3 (EIF-4A-3) >gi|100276|pir||S22579
translation initiation factor eIF-4A - curled-leaved
tobacco >gi|19699|emb|CAA43514| (X61206) nicotiana
eukaryotic translation initiation factor 4A [Nicotiana
plumbaginifolia]
Length = 391
Score = 201 bits (506), Expect = 1e-50
Identities = 113/359 (31%), Positives = 191/359 (52%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + KD + + + FEKP+ +Q++ + ++SGRD++ ++++G+GKT L + Q
Sbjct: 20 FAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQI 79
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
+DT EVQA+I +P+RELA Q K + D + V +GG I+KLE
Sbjct: 80 VDTKSSEVQALILSPTRELAAQTEKV---ILAIGDYINVQAHACIGGKSVGEDIRKLEHG 136
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
VV GTPGR+ D+IK L ++DE+D L GF + + +Q++
Sbjct: 137 V-QVVSGTPGRVCDMIKRRTLRTRGIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVV 195
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ SAT+P ++ K++ +PV + + + I+ + V+ + L L
Sbjct: 196 LISATLPNEILEITSKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 255
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NTK +VD + + N V+ +HGD+P +ER IM + + ++ TD
Sbjct: 256 TITQAVIFCNTKRKVDWLTSKMRENNFTVSSMHGDMPQKERDAIMAEFRGGTTRVLITTD 315
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARG+D++ VS +IN ++P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 316 VWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQ 374
gi|2773184 (AF039720) similar to the "DEAD" box family of helicases; most
similar to eukaryotic initiation factor 4A
[Caenorhabditis elegans]
Length = 399
Score = 201 bits (505), Expect = 1e-50
Identities = 108/341 (31%), Positives = 188/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ +P +L RD++ ++++G+GKT TF + + Q +DT + E QA+I +P+RE
Sbjct: 46 FEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRE 105
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D + V +GGT+ I+KL+ Q HVV GTPGR+ D+I+
Sbjct: 106 LAVQIQKVV---LALGDYMNVQCHACIGGTNLGEDIRKLDYGQ-HVVSGTPGRVFDMIRR 161
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
L V+DEAD L+ GF + I Q+++ SAT+P ++ K++
Sbjct: 162 RNLRTRAIKLLVLDEADEMLNKGFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFM 221
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P+ + + + I+ + V+ L+ L A++F NT+ +VD +
Sbjct: 222 TDPIRILVKRDELTLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWL 281
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ +HGD+ ++R +M + + +++TD+ ARG+D+ VS +IN +
Sbjct: 282 TDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYD 341
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 342 LPNNRELYIHRIGRSGRFGRKGVAINFVKQDDVRILRDIEQ 382
emb|CAB51742.1| (AJ245474) RNA helicase-1 [Plasmodium falciparum]
Length = 386
Score = 199 bits (502), Expect = 3e-50
Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 15/359 (4%)
Query: 8 FKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK----- 62
F I + L +KPT++Q + +P +L GRD++G + TGSGKT F+LP+ K
Sbjct: 3 FPKAILKGLRKKNIKKPTQIQMQGLPSILLGRDIIGIAFTGSGKTIVFVLPLIMKCLEAE 62
Query: 63 IDTDLDEVQA---VITAPSRELATQIYKAAQEFTKVNDK-----LRVSNFVGGTDKARQI 114
I L+E + +I PSRELATQ + + F + K LR +GG Q
Sbjct: 63 IRCKLEEGEGPIGLIICPSRELATQTHNIIKYFCEFLYKDNFPTLRSLCMIGGISAYEQG 122
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174
++++ H+++ TPGR++D++ + + DEAD +D+GF +V F
Sbjct: 123 REIQKGI-HMIVATPGRLNDMLNKKRMTLEQCRYLCFDEADRLIDLGFEEEVRNTLDHFS 181
Query: 175 KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ 234
+ Q L+FSAT+P+K+Q F K L NP++ + + + + K LL+
Sbjct: 182 NQRQTLLFSATMPKKIQEFAKSTLVNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLE 241
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
+ + T P + +IF K VDD+H +L G+ IHG++ ER+ +N +
Sbjct: 242 VLQKTGPPV-LIFCENKKDVDDVHEYLLLKGVNAVAIHGNLGQSERQEAINLFREGKKDI 300
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+V TD+A++G+D + H+IN ++PKD+ +VHR+GR+GR G G A T + + + +I
Sbjct: 301 LVGTDVASKGLDFPSIEHVINYDMPKDIENYVHRIGRTGRCGKTGIATTFINKNQEEAI 359
dbj|BAA34994.1| (AB017003) DjVLGB [Dugesia japonica]
Length = 781
Score = 199 bits (502), Expect = 3e-50
Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 16/357 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + I + +++PT +Q+ IP +L RD++ ++TGSGKT FL+PI
Sbjct: 186 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 245
Query: 63 -IDTDLDEVQ--------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQ 113
+ DL++ + +I AP+RELA QI +Q+F+ +N LR GG D Q
Sbjct: 246 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTHSQ 304
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF 173
I++++ H+++ TPGR+ D I+ N + + V+DEAD LDMGF + +I
Sbjct: 305 IREVQMGC-HLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 363
Query: 174 ----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN 229
G Q L+FSAT P+++Q +L+N + + SD+I+ ++
Sbjct: 364 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQEIIYMTDVEKL 423
Query: 230 QLLLQLTKATNPY-MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIK 288
L + T P + +IF TK D + FL S G V+ IHGD ER+ ++ +
Sbjct: 424 NYLKNIFNTTAPNTLILIFVETKKGADSLARFLLSKGYPVSSIHGDRSQVEREAALSMFR 483
Query: 289 NLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLY 345
N +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G G A + Y
Sbjct: 484 NGQCPILVATAVAARGLDIPNVKHVINYDLPSDIEEYVHRIGRTGRLGNHGRATSFY 540
emb|CAA09199| (AJ010460) RNA helicase [Arabidopsis thaliana]
Length = 505
Score = 199 bits (502), Expect = 3e-50
Identities = 120/358 (33%), Positives = 194/358 (53%), Gaps = 5/358 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + FE+P+ +QE+ IPI L+GRD++ +K G+GKT F +P+ +
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
KID D + +QAVI P+RELA Q + +E K + K++V GGT I +L Q
Sbjct: 192 KIDQDNNVIQAVIIVPTRELALQTSQVCKELGK-HLKIQVMVTTGGTSLKDDIMRL--YQ 248
Query: 122 P-HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P H+++GTPGRI DL K ++ + V+DEAD L F V+ + S + Q+L
Sbjct: 249 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 308
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT P ++ F ++L NP + + ++ + I + + L L
Sbjct: 309 MFSATFPVTVKDFKDRFLTNPYVINLMDELTLKG-ITQFYAFVEERQKIHCLNTLFSKLQ 367
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
++IF N+ RV+ + +T G + IH + R R+ + +N + +V TD+
Sbjct: 368 INQSIIFCNSVNRVELLAKKITELGYSCSYIHAKMLQDHRNRVFHDFRNGACRNLVCTDL 427
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
RGIDI+ V+ +IN + PK+ ++HRVGRSGR G G A+ L + D ++ IE+
Sbjct: 428 FTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 485
sp|Q10055|IF4N_SCHPO EUKARYOTIC INITIATION FACTOR 4A-LIKE PROTEIN C1F5.10
>gi|1103737|emb|CAA92238.1| (Z68136) eukaryotic
initiation factor 4a [Schizosaccharomyces pombe]
Length = 394
Score = 199 bits (502), Expect = 3e-50
Identities = 115/359 (32%), Positives = 191/359 (53%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + N K+ + + + +E P+ VQ + I + GRD++ ++++G+GKT TF + I Q
Sbjct: 23 FEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQS 82
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
ID + + QA+I +P+RELA QI + D + V +GGT IKKL+
Sbjct: 83 IDLSVRDTQALILSPTRELAVQIQNVV---LALGDHMNVQCHACIGGTSVGNDIKKLDYG 139
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
Q HVV GTPGR+ D+I+ L ++DEAD L+ GF + I Q++
Sbjct: 140 Q-HVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVV 198
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
V SAT+PQ + K+ NPV + + + ++ + ++ + L L
Sbjct: 199 VVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL 258
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF N++ +VD + + V +HG++P +ER IM + + + ++ TD
Sbjct: 259 TITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTD 318
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
I ARGID++ VS +IN ++P + ++HR+GRSGR G +G AI + D +R+IE+
Sbjct: 319 IWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQ 377
emb|CAB61567.1| (AJ250879) ATP-dependent RNA helicase [Candida albicans]
Length = 399
Score = 199 bits (500), Expect = 5e-50
Identities = 116/359 (32%), Positives = 191/359 (52%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N K + + + FE P+ +Q + I ++SGRD + ++++G+GKT TF + + +
Sbjct: 28 FESMNLKPDLLKGIYAYGFEAPSAIQSRAIMQIISGRDTIAQAQSGTGKTATFSIGMLEV 87
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
IDT E QA+I +P+RELA QI + D + + +GG + +KKL+
Sbjct: 88 IDTKSKECQALILSPTRELAIQIQNVVMH---LGDYMNIHTHACIGGKNVGEDVKKLQQG 144
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
Q +V GTPGR+ D+IK L ++DEAD GF + +I VQ++
Sbjct: 145 Q-QIVSGTPGRVIDVIKRRNLQTRNIKVLILDEADELFTKGFKEQIYEIYKHLPPSVQVV 203
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
V SAT+P+++ K+ +PV + + I+ + V + L L
Sbjct: 204 VVSATLPREVLEMTSKFTTDPVKILVKRDEISLSGIKQYYVQCEREDWKFDTLCDLYDNL 263
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
A+IF NTK +V+ + + V +HGD+ ER IMN + + + +++TD
Sbjct: 264 TITQAVIFCNTKLKVNWLADQMKKQNFTVVAMHGDMKQDERDSIMNDFRRGNSRVLISTD 323
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P D ++HR+GRSGR G +GTAI L + D +++E+EK
Sbjct: 324 VWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKGTAINLITKDDVVTLKELEK 382
sp|P87206|IF4A_CANAL EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|2190248|dbj|BAA20371|
(D84472) translation initiation factor [Candida
albicans]
Length = 397
Score = 198 bits (498), Expect = 8e-50
Identities = 114/358 (31%), Positives = 195/358 (53%), Gaps = 3/358 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF D N K I + + +E P+ +Q++ I + GRD++ ++++G+GKT TF + Q
Sbjct: 24 KFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQ 83
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
+I+ + QA+I AP+RELA QI K + K+ V +GGT + I+ S
Sbjct: 84 RINENEKATQALILAPTRELALQI-KNVITAIGLYLKVTVHASIGGTSMSDDIEAFRSGV 142
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
+V+GTPGR+ D+I+ F++DEAD L GF + I + Q+++
Sbjct: 143 -QIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEMLSSGFKEQIYNIFRLLPETTQIVL 201
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATN 240
SAT+PQ + K+++NPV + + + I+ + ++ + + L L + +
Sbjct: 202 LSATMPQDVLEVTTKFMNNPVRILVKKDELTLEGIKQFYINVELEDYKFDCLCDLYDSIS 261
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
A+IF NT+ +V+ + + L V+ IH D+P ER IM ++ + +++TD+
Sbjct: 262 VTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHADLPQAERDTIMKEFRSGSSRILISTDL 321
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
ARGID++ VS +IN ++P + ++HR+GR GR G +G AI + D +REIEK
Sbjct: 322 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTDRDVGMMREIEK 379
ref|NP_031867.1|| DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 6
>gi|1709532|sp|P54823|DDX6_MOUSE PROBABLE ATP-DEPENDENT
RNA HELICASE P54 (ONCOGENE RCK HOMOLOG) (DEAD BOX
PROTEIN 6) >gi|940408|dbj|BAA09088| (D50494) RCK [Mus
musculus]
Length = 483
Score = 198 bits (497), Expect = 1e-49
Identities = 116/365 (31%), Positives = 195/365 (52%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI LSGRD++ +K G+GK+ +L+P+ +
Sbjct: 97 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V GGT+ I +L+ +
Sbjct: 157 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT- 215
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 276 YSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFSRLQI 334
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 335 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLF 394
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + D +++ I E++G
Sbjct: 395 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 454
Query: 361 VTFQP 365
+P
Sbjct: 455 TEIKP 459
sp|P26196|DDX6_HUMAN PROBABLE ATP-DEPENDENT RNA HELICASE P54 (ONCOGENE RCK) (DEAD BOX
PROTEIN 6) >gi|106335|pir||S22651 hypothetical protein -
human
Length = 483
Score = 198 bits (497), Expect = 1e-49
Identities = 116/365 (31%), Positives = 195/365 (52%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI LSGRD++ +K G+GK+ +L+P+ +
Sbjct: 97 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 156
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V GGT+ I +L+ +
Sbjct: 157 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT- 215
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 275
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 276 YSATFPLSVQKFMNSHLEKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFSRLQI 334
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 335 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLF 394
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + D +++ I E++G
Sbjct: 395 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 454
Query: 361 VTFQP 365
+P
Sbjct: 455 TEIKP 459
ref|NP_004388.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD)
>gi|2136088|pir||I52691 RCK - human
>gi|458727|dbj|BAA04482| (D17532) RCK [Homo sapiens]
Length = 472
Score = 198 bits (497), Expect = 1e-49
Identities = 116/365 (31%), Positives = 195/365 (52%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI LSGRD++ +K G+GK+ +L+P+ +
Sbjct: 86 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 145
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V GGT+ I +L+ +
Sbjct: 146 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT- 204
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 205 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 264
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 265 YSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFSRLQI 323
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 324 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLF 383
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + D +++ I E++G
Sbjct: 384 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 443
Query: 361 VTFQP 365
+P
Sbjct: 444 TEIKP 448
gi|173419 (L11574) p68 RNA helicase [Schizosaccharomyces pombe]
>gi|3810840|emb|CAA21801| (AL032684) p68-like protein.
[Schizosaccharomyces pombe]
Length = 550
Score = 198 bits (497), Expect = 1e-49
Identities = 116/363 (31%), Positives = 192/363 (51%), Gaps = 11/363 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + F +Y+ + ++ + FE PT +Q++ P+ +SGRD+VG S TGSGKT ++ LP
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I+ D ++ AP+RELA QI + +F K + ++R + GG + QI+ L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPRGPQIRDL 242
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
+ I TPGR+ D++ SN + V+DEAD LDMGF + +I
Sbjct: 243 IRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 301
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLL---- 233
Q ++FSAT P+++Q + YL++ + + + + + +V ++ + L
Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ +IF TK DDI FL +G IHGD ER ++N +
Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+VATD+A+RGID++G++H+ N + P + +VHR+GR+GR G +GTA T ++ +
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481
Query: 354 REI 356
RE+
Sbjct: 482 REL 484
emb|CAA76677| (Y17186) translation initiation factor [Pisum sativum]
Length = 407
Score = 197 bits (496), Expect = 1e-49
Identities = 109/360 (30%), Positives = 194/360 (53%), Gaps = 8/360 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F K+ + + + FEKP+ +Q++ + ++ GRD++ ++++G+GKT L + Q
Sbjct: 35 FEGMGIKEDLLRGIYAYGFEKPSAIQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQV 94
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESS 120
+DT + EVQA+I +P+RELATQ K + D + + +GG I+KLE
Sbjct: 95 VDTSVREVQALIVSPTRELATQTEKV---ILAIGDHINIQAHACIGGKSVGEDIRKLEHG 151
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV GTPGR+ D+IK L V+DE+D L GF + + +Q+
Sbjct: 152 V-HVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
+ S T+P ++ K++ +PV + + + I+ + V+ + L +
Sbjct: 211 LISRTLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEKEDWKFDTLCVIFMIL 270
Query: 240 NPYMAMIFA-NTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
+P + ++++ NTK +VD + + +N V+ +HGD+P +ER IM + + ++ T
Sbjct: 271 SPSLKLLYSVNTKRKVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITT 330
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D+ ARG+D++ VS +IN ++P + ++HR+GRSGR G +G AI D +R+IE+
Sbjct: 331 DVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQ 390
dbj|BAA77391.1| (AB013609) DEAD box protein [Cavia porcellus]
Length = 472
Score = 197 bits (495), Expect = 2e-49
Identities = 115/365 (31%), Positives = 195/365 (52%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI L+GRD++ +K G+GK+ +L+P+ +
Sbjct: 86 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALTGRDILARAKNGTGKSGAYLIPLLE 145
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V GGT+ I +L+ +
Sbjct: 146 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT- 204
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 205 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 264
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 265 YSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFPRLQT 323
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 324 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLF 383
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + D +++ I E++G
Sbjct: 384 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 443
Query: 361 VTFQP 365
+P
Sbjct: 444 TEIKP 448
sp|P54824|DDX6_XENLA ATP-DEPENDENT RNA HELICASE P54 >gi|1044938|emb|CAA63149| (X92421)
RNA helicase p54 [Xenopus laevis]
Length = 481
Score = 197 bits (495), Expect = 2e-49
Identities = 117/365 (32%), Positives = 195/365 (53%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI LSGRD++ +K G+GKT +L+P+ +
Sbjct: 96 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKTGAYLIPLLE 155
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V GGT+ I +L+ +
Sbjct: 156 RLDLKKDCIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDT- 214
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 215 VHVVIATPGRILDLIKKGVAKVDHIQMIVLDEADKLLSQDFMQIMEDIIMTLPKNRQILL 274
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 275 YSATFPLSVQKFMTLHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFSRLQI 333
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 334 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLF 393
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + D +++ I E++G
Sbjct: 394 TRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 453
Query: 361 VTFQP 365
+P
Sbjct: 454 TEIKP 458
emb|CAA65745| (X97017) heat resistant RNA dependent ATPase [Thermus thermophilus]
Length = 510
Score = 196 bits (494), Expect = 2e-49
Identities = 116/361 (32%), Positives = 187/361 (51%), Gaps = 9/361 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M+F DF K I + L PT +Q +P+ L G+DL+G+++TG+GKT F LPI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 61 QKIDTDLD---EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+++ + + +A++ P+RELA Q+ A E T V L+V GGT +Q + L
Sbjct: 61 ERLAPSQERGRKPRALVLTPTRELALQV---ASELTAVAPHLKVVAVYGGTGYGKQKEAL 117
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
V+ TPGR D ++ L + V+DEAD L MGF +V+ + S+
Sbjct: 118 LRGAD-AVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSR 176
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTK 237
Q L+FSAT+P + ++Y+ NPV+ + + T E V ++L L
Sbjct: 177 QTLLFSATLPSWAKRLAERYMKNPVLINVIKDEPV--TYEEEAVPAPVRGRLEVLSDLLY 234
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
+P AM+F TK ++I L G +HGD+ ER+R++ + + + + +VA
Sbjct: 235 VASPDRAMVFTRTKAETEEIAQGLLRLGHLAQALHGDLSQGERERVLGAFRQGEVRVLVA 294
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TD+AARG+DI V +++ +P + HR GR+GR G G + LY P + + +E
Sbjct: 295 TDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALE 354
Query: 358 K 358
+
Sbjct: 355 R 355
ref|NP_014847.1|DED1| ATP-dependent RNA helicase of DEAD box family; Ded1p
>gi|118411|sp|P06634|DED1_YEAST PUTATIVE ATP-DEPENDENT
RNA HELICASE DED1 >gi|82908|pir||S13653 ATP-dependent
RNA helicase DED1 - yeast (Saccharomyces cerevisiae)
>gi|3647|emb|CAA40546| (X57278) Ded1p (Spp81p)
[Saccharomyces cerevisiae] >gi|1420479|emb|CAA99419|
(Z75110) ORF YOR204w [Saccharomyces cerevisiae]
Length = 604
Score = 196 bits (494), Expect = 2e-49
Identities = 124/379 (32%), Positives = 199/379 (51%), Gaps = 26/379 (6%)
Query: 4 TDFNFKDYINQTLENIK---FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI- 59
T+F LENIK F KPT VQ+ +PIV +GRDL+ ++TGSGKT FL P+
Sbjct: 142 TEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKTGGFLFPVL 201
Query: 60 ---FQKIDTDLDEVQ-----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV 105
F+ + E Q AVI AP+RELATQI+ A++FT ++
Sbjct: 202 SESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFT-YRSWVKACVVY 260
Query: 106 GGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLAD 165
GG+ Q++++E +++ TPGR++DL++ + + V+DEAD LDMGF
Sbjct: 261 GGSPIGNQLREIERG-CDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQ 319
Query: 166 VDQIA-----SSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWL 220
+ I + G+R Q L+FSAT P +Q + +L + + + S+ I +
Sbjct: 320 IRHIVEDCDMTPVGER-QTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV 378
Query: 221 VSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRER 280
+ + LL L A+ + +IF TK D + FL + IHGD ER
Sbjct: 379 LYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSER 438
Query: 281 KRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGT 340
+R + + ++ +VAT +AARG+DI V+H+IN ++P D+ +VHR+GR+GR G G
Sbjct: 439 ERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGL 498
Query: 341 AITLYSPSDDSSIREIEKM 359
A ++ + + ++ + ++
Sbjct: 499 ATAFFNSENSNIVKGLHEI 517
gb|AAD02177.1| (AF040045) DEAD box RNA helicase homolog [Anabaena variabilis]
Length = 425
Score = 196 bits (493), Expect = 3e-49
Identities = 118/366 (32%), Positives = 195/366 (53%), Gaps = 9/366 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI- 59
M F+ + I + + + KPT +Q + IP VLSGRDL+ ++TG+GKT +F LP+
Sbjct: 1 MSFSHLGLSNEIINAVTELGYTKPTPIQMQSIPAVLSGRDLLRGAQTGTGKTASFTLPLL 60
Query: 60 --FQKIDTDLDE----VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQ 113
+ KI + ++A+I P+RELA Q+ + +++ K KL GG Q
Sbjct: 61 HYYPKIVLKALQCFLTIRALILTPTRELAAQVESSVRDYGKYL-KLNSMVMFGGVSINPQ 119
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF 173
++L+ + +++ TPGR+ D ++ + + V+DEAD LDMGF+ D+ +I S
Sbjct: 120 KQRLKG-RVDILVATPGRLLDHVQQGTVNLSQIEILVLDEADRMLDMGFIRDIRRILSLL 178
Query: 174 GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLL 233
K+ Q L+F AT K++ L+ P M ++A + V +DT+ + + LL
Sbjct: 179 PKQRQNLLFFATFSDKIKELAAGLLNRPQMIEVARRNVTADTVTQKVYKIERDRKRDLLA 238
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
L + N Y ++F TK D + L ++ IHG+ R + KN Q
Sbjct: 239 HLIRKDNWYQVLVFTRTKYGADRLVKQLGHERIQALAIHGNKSQSARTHALAKFKNGSLQ 298
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+VATDIAARG+DI + +++N ++P +VHR+GR+GR G G A++L S + +
Sbjct: 299 VLVATDIAARGLDISELPYVVNFDLPYVPEDYVHRIGRTGRAGASGEAVSLVSADEYHLL 358
Query: 354 REIEKM 359
+IEK+
Sbjct: 359 ADIEKL 364
ref|NP_015206.1|DBP1| putative ATP-dependent RNA helicase; Dead box protein; Dbp1p
>gi|1706311|sp|P24784|DBP1_YEAST PROBABLE ATP-DEPENDENT
RNA HELICASE DBP1 (HELICASE CA1) >gi|2132404|pir||S62003
probable ATP-dependent RNA helicase DBP1 - yeast
(Saccharomyces cerevisiae) >gi|1163095 (U43503)
Dbp1p,Lph8p [Saccharomyces cerevisiae]
Length = 617
Score = 196 bits (493), Expect = 3e-49
Identities = 122/372 (32%), Positives = 191/372 (50%), Gaps = 24/372 (6%)
Query: 5 DFNFKDYINQTLENIK---FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF- 60
DF+ +ENIK F KPT VQ+ IPIV GRDL+ ++TGSGKT FL P+F
Sbjct: 155 DFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFT 214
Query: 61 --------------QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVG 106
Q + A++ AP+RELATQI++ A++FT +R G
Sbjct: 215 ELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFT-YRSWVRPCVVYG 273
Query: 107 GTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADV 166
G Q+++++ +++ TPGR++DL++ + + V+DEAD LDMGF +
Sbjct: 274 GAPIGNQMREVDRG-CDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQI 332
Query: 167 DQIASSFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVS 222
I + Q L+FSAT P +Q + +L N + + S+ I ++
Sbjct: 333 RHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILY 392
Query: 223 TKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKR 282
LL L A + + +IF TK D + FL K IHGD ER+R
Sbjct: 393 VDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERER 452
Query: 283 IMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAI 342
+++ K +VAT +AARG+DI V+H+IN ++P D+ +VHR+GR+GR G G A
Sbjct: 453 ALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVAT 512
Query: 343 TLYSPSDDSSIR 354
+ ++ ++ + ++
Sbjct: 513 SFFNSNNQNIVK 524
emb|CAA39465| (X55993) DBP1 [Saccharomyces cerevisiae]
Length = 618
Score = 196 bits (493), Expect = 3e-49
Identities = 122/372 (32%), Positives = 191/372 (50%), Gaps = 24/372 (6%)
Query: 5 DFNFKDYINQTLENIK---FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF- 60
DF+ +ENIK F KPT VQ+ IPIV GRDL+ ++TGSGKT FL P+F
Sbjct: 156 DFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKTGGFLFPLFT 215
Query: 61 --------------QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVG 106
Q + A++ AP+RELATQI++ A++FT +R G
Sbjct: 216 ELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFT-YRSWVRPCVVYG 274
Query: 107 GTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADV 166
G Q+++++ +++ TPGR++DL++ + + V+DEAD LDMGF +
Sbjct: 275 GAPIGNQMREVDRG-CDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQI 333
Query: 167 DQIASSFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVS 222
I + Q L+FSAT P +Q + +L N + + S+ I ++
Sbjct: 334 RHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRILY 393
Query: 223 TKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKR 282
LL L A + + +IF TK D + FL K IHGD ER+R
Sbjct: 394 VDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERER 453
Query: 283 IMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAI 342
+++ K +VAT +AARG+DI V+H+IN ++P D+ +VHR+GR+GR G G A
Sbjct: 454 ALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIGRTGRAGNTGVAT 513
Query: 343 TLYSPSDDSSIR 354
+ ++ ++ + ++
Sbjct: 514 SFFNSNNQNIVK 525
pir||S53814 DEAD box protein - slime mold (Dictyostelium discoideum) (fragment)
>gi|550329|emb|CAA57417| (X81823) putative RNA helicase
[Dictyostelium discoideum]
Length = 582
Score = 196 bits (493), Expect = 3e-49
Identities = 123/385 (31%), Positives = 217/385 (55%), Gaps = 18/385 (4%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI-----DTD 66
++ L+ ++EKPT +Q + IP +++GRDL+G ++TGSGKT FLLP+F+ I
Sbjct: 33 VHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAP 92
Query: 67 LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
+ + A+I +P+RELA QI+ ++F+KV LR + GG + QI +L+ +V+
Sbjct: 93 GEGMIALIMSPTRELALQIHVECKKFSKVLG-LRTACVYGGASISEQIAELKRGAD-IVV 150
Query: 127 GTPGRIHDLIKSNALIVHTAN--TFVV-DEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183
TPGR+ D++ +N + TF+V DEAD DMGF ++ I S Q ++FS
Sbjct: 151 CTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVDSIRPDRQTIMFS 210
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT-NPY 242
AT P K++ KK L+ P+ ++++S IE ++ + + L++L +
Sbjct: 211 ATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRRLIELLSIWYHKG 270
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
+IF N + D+++ L+++ + +HG +R ++ KN ++AT +A+
Sbjct: 271 QILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNKVKTILIATPLAS 330
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD----SSIREIEK 358
RG+DI+ ++ ++N + P L +VHRVGR+GR G +GTA T +P ++ S I+ +E+
Sbjct: 331 RGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEERFSSSIIKALEQ 390
Query: 359 MGVTFQPKAIKDGEIVDSYDRDRRE 383
G + K + D+Y++ R+E
Sbjct: 391 SGSKVPDELRK---LNDTYEKKRKE 412
emb|CAB16225.1| (Z99162) putative ATP-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 434
Score = 196 bits (492), Expect = 4e-49
Identities = 117/382 (30%), Positives = 208/382 (53%), Gaps = 8/382 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K + + + + FE P+EVQ+ IP + G D++ ++K+G GKT F+L Q+
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK--KLESS 120
I+ EV ++ +RELA QI F+K +R + F GG + + ++ K +S
Sbjct: 113 IEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSK 172
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLD-MGFLADVDQIASSFGKRVQM 179
PH+V+ TPGR++ L++ L V++ FV+DE D L+ + D+ ++ + + Q+
Sbjct: 173 SPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFRATPPQKQV 232
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVIS-DTIENWLVSTKGSSHNQLLLQLTKA 238
++FSAT+ +++P KK++ NP+ + ++T ++ ++ V + + N+ + L +
Sbjct: 233 MMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDLLDS 292
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
+IF + R +++ L IHG +P ER + + K+ D + VAT
Sbjct: 293 LEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVAT 352
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS----SIR 354
D+ RGIDIE V+ +IN ++P ++HRVGR+GR G +G AIT S +DS I+
Sbjct: 353 DVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQ 412
Query: 355 EIEKMGVTFQPKAIKDGEIVDS 376
E ++ +T P I G +++
Sbjct: 413 ERFEVNITELPDEIDVGSYMNA 434
emb|CAA93395| (Z69382) RNA elicase [Saccharomyces cerevisiae]
Length = 547
Score = 196 bits (492), Expect = 4e-49
Identities = 120/358 (33%), Positives = 198/358 (54%), Gaps = 20/358 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + F DY+ ++ F+KPT +Q + P+ LSGRD+VG + TGSGKT ++ LP
Sbjct: 115 FDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVH 174
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I+ D ++ AP+RELA QI +F + ++R + GG K++QI+ L
Sbjct: 175 INAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGH-SSRIRNTCVYGGVPKSQQIRDL 233
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
S +VI TPGR+ D+++ + V+DEAD LDMGF + +I
Sbjct: 234 -SRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 292
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIA--------NKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P++++ YL++P+ ++ N T I + + ++ + + +
Sbjct: 293 QTLMWSATWPKEVKQLAADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKY- 351
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L+ N Y +IFA+TK DDI +L +G IHGD RER ++ +N
Sbjct: 352 ---LETASQDNEYKTLIFASTKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRN 408
Query: 290 LDYQYVVATDIAARGI-DIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+VATD+AARGI +++G++++IN ++P ++ +VHR+GR+GR G GTAI+ ++
Sbjct: 409 GRSPIMVATDVAARGIGNVKGINYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFT 466
sp|Q18212|HE47_CAEEL PROBABLE ATP-DEPENDENT RNA HELICASE P47 HOMOLOG
>gi|3874509|emb|CAA91120.1| (Z54327) similar to
translation initiation factor eIF-4A; cDNA EST
EMBL:Z14797 comes from this gene; cDNA EST EMBL:T01553
comes from this gene; cDNA EST EMBL:T00043 comes from
this gene; cDNA EST CEESF23F comes from this gene...
Length = 425
Score = 196 bits (492), Expect = 4e-49
Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 6/372 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K I + + + FE P+EVQ + IP + G D+V ++K+G GKT F++ Q+
Sbjct: 43 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 102
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
++ EV V +RELA QI K + F+K ++V+ F GG + ++L + P
Sbjct: 103 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 162
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEAD-MTLDMGFLADVDQIASSFGKRVQMLV 181
H+V+GTPGR+ L +S L + FV+DE D M D DV +I ++ Q+++
Sbjct: 163 HIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMM 222
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVIS-DTIENWLVSTKGSSHNQLLLQLTKATN 240
FSAT+P++L+ K+++ +P+ + ++ ++ ++ V K + N+ LL L A
Sbjct: 223 FSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALE 282
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
+IF R + +H LT IH + ER + K+ + +VATD+
Sbjct: 283 FNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDL 342
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD----SSIREI 356
RG+DIE V+ + N ++P+D ++HRV R+GR G +G AIT S +D +S+++
Sbjct: 343 FGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDR 402
Query: 357 EKMGVTFQPKAI 368
+ +T P+ I
Sbjct: 403 FDISITELPEKI 414
prf||1705300A ATP dependent RNA helicase [Saccharomyces cerevisiae]
Length = 604
Score = 195 bits (491), Expect = 6e-49
Identities = 124/379 (32%), Positives = 198/379 (51%), Gaps = 26/379 (6%)
Query: 4 TDFNFKDYINQTLENIK---FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI- 59
T+F LENIK F KPT VQ+ +PIV +GRDL ++TGSGKT FL P+
Sbjct: 142 TEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLKACAQTGSGKTGGFLFPVL 201
Query: 60 ---FQKIDTDLDEVQ-----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV 105
F+ + E Q AVI AP+RELATQI+ A++FT ++
Sbjct: 202 SESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFT-YRSWVKACVVY 260
Query: 106 GGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLAD 165
GG+ Q++++E +++ TPGR++DL++ + + V+DEAD LDMGF
Sbjct: 261 GGSPIGNQLREIERG-CDLLVATPGRLNDLLERGKISLANVKYLVLDEADRMLDMGFEPQ 319
Query: 166 VDQIA-----SSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWL 220
+ I + G+R Q L+FSAT P +Q + +L + + + S+ I +
Sbjct: 320 IRHIVEDCDMTPVGER-QTLMFSATFPADIQHLARDFLSDYIFLSVGRVGSTSENITQKV 378
Query: 221 VSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRER 280
+ + LL L A+ + +IF TK D + FL + IHGD ER
Sbjct: 379 LYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTDFLIMQNFRATAIHGDRTQSER 438
Query: 281 KRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGT 340
+R + + ++ +VAT +AARG+DI V+H+IN ++P D+ +VHR+GR+GR G G
Sbjct: 439 ERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGRTGRAGNTGL 498
Query: 341 AITLYSPSDDSSIREIEKM 359
A ++ + + ++ + ++
Sbjct: 499 ATAFFNSENSNIVKGLHEI 517
gb|AAB94769| (AF038995) putative RNA helicase RCK [Mus musculus]
Length = 453
Score = 194 bits (489), Expect = 9e-49
Identities = 116/365 (31%), Positives = 194/365 (52%), Gaps = 3/365 (0%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + +EKP+ +QE+ IPI LSGRD++ +K G+GK+ +L+P+ +
Sbjct: 72 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 131
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
++D D +QA++ P+RELA Q+ + + +K +V G T+ I +L+ +
Sbjct: 132 RLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGPTNLRDDIMRLDDT- 190
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
HVVI TPGRI DLIK V V+DEAD L F+ ++ I + K Q+L+
Sbjct: 191 VHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILL 250
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P +Q F+ +L P + + + + + T+ + L L
Sbjct: 251 YSATFPLSVQKFMNSHLQKPYEINLMEELTLKGVTQYYAYVTERQKVH-CLNTLFSRLQI 309
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
++IF N+ RV+ + ++ G IH + R R+ + +N + +V TD+
Sbjct: 310 NQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRNRVFHDFENGLCRNLVCTDLF 369
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI-EKMG 360
RGIDI+ V+ +IN + PK ++HRVGRSGR G G AI L + D +++ I E++G
Sbjct: 370 TRGIDIQAVNVVINFDFPKLAETYLHRVGRSGRFGHLGLAINLITYDDRFNLKSIEEQLG 429
Query: 361 VTFQP 365
+P
Sbjct: 430 TEIKP 434
ref|NP_004651.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide, Y chromosome
>gi|6014945|sp|O15523|DDXY_HUMAN DEAD BOX PROTEIN 3,
Y-CHROMOSOMAL >gi|2580554 (AF000984) dead box, Y isoform
[Homo sapiens] >gi|2580556 (AF000985) dead box, Y
isoform [Homo sapiens]
Length = 660
Score = 194 bits (489), Expect = 9e-49
Identities = 122/378 (32%), Positives = 200/378 (52%), Gaps = 27/378 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + + I +E ++ +PT VQ+ IPI+ RDLV ++TGSGKT FLLPI +
Sbjct: 180 FSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLVACAQTGSGKTAAFLLPILSQ 239
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I TD L V+ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 240 IYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 298
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 299 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 357
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 358 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 416
Query: 220 LVSTKGSSHNQLLLQLTKAT-NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + LL + AT + + ++F TK D + FL G IHGD R
Sbjct: 417 VVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 476
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 477 DREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYVHRIGRTGRVGNL 536
Query: 339 GTAITLYSPSDDSSIREI 356
G A + ++ + + +++
Sbjct: 537 GLATSFFNEKNMNITKDL 554
sp|Q09181|ST13_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE STE13 >gi|1076910|pir||S46654
probable RNA helicase - fission yeast
(Schizosaccharomyces pombe) >gi|703066|dbj|BAA06178.1|
(D29795) RNA helicase [Schizosaccharomyces pombe]
>gi|4176526|emb|CAA22882.1| (AL035263) putative
atp-dependent rna helicase ste13p [Schizosaccharomyces
pombe]
Length = 485
Score = 194 bits (489), Expect = 9e-49
Identities = 118/366 (32%), Positives = 196/366 (53%), Gaps = 6/366 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + FE+P+ +QE+ IPI LSGRD++ +K G+GKT F++P +
Sbjct: 45 EFEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLE 104
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTK-VNDKLRVSNFVGGTDKARQIKKLESS 120
K+DT ++Q +I P+RELA Q + + K +N K+ V+ GGT I +L +
Sbjct: 105 KVDTKKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVT--TGGTTLRDDIIRLNDT 162
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
H+V+GTPGR+ DL TFV+DEAD L F ++Q+ S F K Q+
Sbjct: 163 -VHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQIS 221
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
++SAT P ++ F+ K+L+ P + ++ + + + S L L
Sbjct: 222 LYSATFPLIVKNFMDKHLNKPYEINLMDELTLRG-VTQYYAFVDESQKVHCLNTLFSKLQ 280
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
++IF N+ RV+ + +T G H + R R+ ++ +N + +V +D+
Sbjct: 281 INQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDL 340
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KM 359
RGIDI+ V+ +IN + PK+ ++HR+GRSGR G +G AI+ S +D ++ IE ++
Sbjct: 341 LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENEL 400
Query: 360 GVTFQP 365
G QP
Sbjct: 401 GTEIQP 406
sp|P24782|DBP2_SCHPO P68-LIKE PROTEIN >gi|82829|pir||S14048 RNA helicase dbp2 - fission
yeast (Schizosaccharomyces pombe) >gi|5270|emb|CAA36873|
(X52648) p68 protein [Schizosaccharomyces pombe]
Length = 550
Score = 194 bits (489), Expect = 9e-49
Identities = 116/363 (31%), Positives = 190/363 (51%), Gaps = 11/363 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + F +Y+ + ++ + FE PT +Q++ P+ +SGRD+VG S TGSGKT ++ LP
Sbjct: 124 FEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVH 183
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I+ D ++ AP+RELA QI + +F K + ++R + GG QI L
Sbjct: 184 INAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGK-SSRIRNTCVYGGVPLGPQILDL 242
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
+ I TPGR+ D++ SN + V+DEAD LDMGF + +I
Sbjct: 243 IRGV-EICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 301
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLL---- 233
Q ++FSAT P+++Q + YL++ + + + + + +V ++ + L
Sbjct: 302 QTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDI 361
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ +IF TK DDI FL +G IHGD ER ++N +
Sbjct: 362 EEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSP 421
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+VATD+A+RGID++G++H+ N + P + +VHR+GR+GR G +GTA T ++ +
Sbjct: 422 IMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQA 481
Query: 354 REI 356
RE+
Sbjct: 482 REL 484
gb|AAD23001.1|AC007087_20 (AC007087) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 633
Score = 194 bits (488), Expect = 1e-48
Identities = 123/380 (32%), Positives = 197/380 (51%), Gaps = 27/380 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + + + +N + K+ KPT VQ IPI+L GRDL+ ++TGSGKT F PI
Sbjct: 161 FAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISG 220
Query: 63 IDTDLDEVQ-----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
I D VQ AVI +P+RELA+QI+ A++F+ ++V GGT
Sbjct: 221 IMKD-QHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFS-YQTGVKVVVAYGGTPIN 278
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
+Q+++LE +++ TPGR++DL++ + + +DEAD LDMGF + +I
Sbjct: 279 QQLRELERGVD-ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVE 337
Query: 172 SF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGS 226
G R Q L+FSAT P+++Q +L N + + +D I + S
Sbjct: 338 QMDMPPRGVR-QTLLFSATFPREIQRLAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDS 396
Query: 227 SHNQLLLQLTKATNPY-------MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRE 279
L+ L A + ++F TK D + ++L NG IHGD +E
Sbjct: 397 DKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQE 456
Query: 280 RKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQG 339
R+ + + K+ +VATD+AARG+DI V+H++N ++P D+ +VHR+GR+GR G G
Sbjct: 457 REVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG 516
Query: 340 TAITLYSPSDDSSIREIEKM 359
A ++ + S R + ++
Sbjct: 517 LATAFFNDGNTSLARPLAEL 536
emb|CAB68195.1| (AL137082) ATP-dependent RNA helicase-like protein [Arabidopsis
thaliana]
Length = 646
Score = 193 bits (486), Expect = 2e-48
Identities = 119/379 (31%), Positives = 198/379 (51%), Gaps = 25/379 (6%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + + + +N ++ K+ KPT VQ IPI+ +GRDL+ ++TGSGKT F PI
Sbjct: 148 FAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISG 207
Query: 63 I--DTDLDEVQ--------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKAR 112
I D ++ + AVI +P+RELA QI+ A++F+ ++V GGT +
Sbjct: 208 IMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFS-YQTGVKVVVAYGGTPVNQ 266
Query: 113 QIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASS 172
QI++LE +++ TPGR++DL++ + + +DEAD LDMGF + +I
Sbjct: 267 QIRELERGVD-ILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQ 325
Query: 173 F-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSS 227
G R Q ++FSAT P+++Q +L N + + +D I + S
Sbjct: 326 MDMPPPGVR-QTMLFSATFPREIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVHDSD 384
Query: 228 HNQLLLQLTKATNPY-------MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRER 280
L+ L A + ++F TK D + ++L NG IHGD +ER
Sbjct: 385 KRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQER 444
Query: 281 KRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGT 340
+ + S K +VATD+AARG+DI V+H++N ++P D+ +VHR+GR+GR G G
Sbjct: 445 EVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGL 504
Query: 341 AITLYSPSDDSSIREIEKM 359
A ++ ++ + + + ++
Sbjct: 505 ATAFFNDNNTTMAKPLAEL 523
dbj|BAA88059.1| (AB032566) Vasa [Oncorhynchus mykiss]
Length = 647
Score = 193 bits (486), Expect = 2e-48
Identities = 123/368 (33%), Positives = 193/368 (52%), Gaps = 18/368 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F + + +N+ + ++KPT VQ+ IPI+ +GRDL+ ++TGSGKT FLLPI
Sbjct: 211 MGFEEAALCESLNRNISKSGYKKPTPVQKHGIPIIAAGRDLMACAQTGSGKTAAFLLPIL 270
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
Q++ D + E + +I AP+REL QIY A++F +R GG
Sbjct: 271 QQLMVDGVAASQFSEIQEPEVIIVAPTRELINQIYMEARKFAH-GTCVRPVVVYGGISTG 329
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
I+++ +V+ TPGR+ D+I + + V+DEAD LDMGF + ++
Sbjct: 330 HTIREILKGC-NVLCATPGRLMDIIGRGKIGLSKLRYLVLDEADRMLDMGFEPAMRKLVG 388
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKT--VISDTIENWLVSTKG 225
S G + Q L+FSAT P+ +Q +L + SD + + TK
Sbjct: 389 SPGIPAKEDRQTLMFSATYPEDIQKLAADFLKKDYLFLAVGVVGGACSDVEQVVVQVTKF 448
Query: 226 SSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMN 285
S +QLL ++ K T M+F TK + D I FL + IHGD RER++ +
Sbjct: 449 SKRDQLL-EVLKTTGSERTMVFVETKRQADFIATFLCREKVNTTSIHGDREQREREQALG 507
Query: 286 SIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLY 345
++ +VAT +AARG+DI+ V HI+N ++P ++ +VHR+GR+GR G G A+ +
Sbjct: 508 DFRSGRCPVLVATSVAARGLDIKDVQHIVNFDLPNNIDEYVHRIGRTGRCGNTGRAVCFF 567
Query: 346 SPSDDSSI 353
P D ++
Sbjct: 568 DPGADGNL 575
sp|P09052|VASA_DROME VASA PROTEIN >gi|1054723|emb|CAA31405| (X12945) vasa [Drosophila
melanogaster]
Length = 661
Score = 193 bits (485), Expect = 3e-48
Identities = 120/359 (33%), Positives = 190/359 (52%), Gaps = 12/359 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
FT + +D I + F+ PT +Q+ IP++ SGRDL+ ++TGSGKT FLLPI K
Sbjct: 247 FTSADLRDIIIDNVNKSGFKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 306
Query: 63 I-----DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+ + +L Q VI +P+RELA QI+ A++F L++ GGT Q + +
Sbjct: 307 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECI 365
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
HVVI TPGR+ D + + V+DEAD LDMGF D+ +I + R
Sbjct: 366 TRGC-HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 424
Query: 178 --QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKT-VISDTIENWLVSTKGSSHNQLLLQ 234
Q L+FSAT P+++Q ++L N V I SD + K + ++L+
Sbjct: 425 EHQTLMFSATFPEEIQRMAGEFLKNYVSVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEI 484
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L++ + ++F TK D + FL+ IHGD +R++ + KN +
Sbjct: 485 LSEQADG--TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 542
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
++AT +A+RG+DI+ + H+IN ++P + +VHR+GR+G G G A + + P D +I
Sbjct: 543 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGCVGNNGRATSFFDPEKDRAI 601
pir||A31922 ATP-dependent RNA helicase homolog - fruit fly (Drosophila
melanogaster) >gi|158796 (M23560) Mab4611 antigen (vasa)
[Drosophila melanogaster]
Length = 648
Score = 193 bits (485), Expect = 3e-48
Identities = 119/359 (33%), Positives = 190/359 (52%), Gaps = 12/359 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
FT + +D I + ++ PT +Q+ IP++ SGRDL+ ++TGSGKT FLLPI K
Sbjct: 234 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 293
Query: 63 I-----DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+ + +L Q I +P+RELA QI+ A++F L++ GGT Q + +
Sbjct: 294 LLEDPHELELGRPQVCIVSPTRELAIQIFNEARKFA-FESYLKIGIVYGGTSFRHQNECI 352
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
HVVI TPGR+ D + + V+DEAD LDMGF D+ +I + R
Sbjct: 353 TRGC-HVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRP 411
Query: 178 --QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKT-VISDTIENWLVSTKGSSHNQLLLQ 234
Q L+FSAT P+++Q ++L N V I SD + K + ++L+
Sbjct: 412 EHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIEI 471
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L++ + ++F TK D + FL+ IHGD +R++ + KN +
Sbjct: 472 LSEQADG--TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKV 529
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
++AT +A+RG+DI+ + H+IN ++P + +VHR+GR+GR G G A + + P D +I
Sbjct: 530 LIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFHPEKDRAI 588
gi|2580550 (AF000982) dead box, X isoform [Homo sapiens] >gi|2580552
(AF000983) dead box, X isoform [Homo sapiens]
Length = 662
Score = 192 bits (484), Expect = 4e-48
Identities = 121/368 (32%), Positives = 194/368 (51%), Gaps = 27/368 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + I +E ++ +PT VQ+ IPI+ RDL+ ++TGSGKT FLLPI +
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I +D L ++ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 300
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 301 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 359
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 360 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + S LL L AT + ++F TK D + FL G IHGD R
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538
Query: 339 GTAITLYS 346
G A + ++
Sbjct: 539 GLATSFFN 546
emb|CAA73349| (Y12819) putative RNA helicase (DEAD box) [Danio rerio]
Length = 688
Score = 192 bits (484), Expect = 4e-48
Identities = 122/382 (31%), Positives = 199/382 (51%), Gaps = 31/382 (8%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + I + ++ +PT VQ+ IPI+ S RDL+ ++TGSGKT FLLP+ +
Sbjct: 210 FHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ 269
Query: 63 IDTDL--DEVQA--------------------VITAPSRELATQIYKAAQEFTKVNDKLR 100
I TD + +QA ++ AP+RELA QIY A++F+ +R
Sbjct: 270 IYTDGPGEALQAAKNSAQENGKYGRRKQYPISLVLAPTRELALQIYDEARKFS-YRSHVR 328
Query: 101 VSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDM 160
GG D +QI+ LE H+++ TPGR+ D+++ + + N V+DEAD LDM
Sbjct: 329 PCVVYGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDM 387
Query: 161 GFLADVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDT 215
GF + +I G R Q ++FSAT P+++Q + +L + + + S+
Sbjct: 388 GFEPQIRRIVEQDTMPPKGLR-QTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSEN 446
Query: 216 IENWLVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGD 274
I +V + + LL L AT + ++F TK D + FL G IHGD
Sbjct: 447 ITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGD 506
Query: 275 VPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGR 334
R+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR
Sbjct: 507 RSQRDREEALHQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGR 566
Query: 335 NGLQGTAITLYSPSDDSSIREI 356
G G A + ++ + + +++
Sbjct: 567 VGNLGLATSFFNDKNGNITKDL 588
ref|NP_001347.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3
>gi|3023628|sp|O00571|DDX3_HUMAN DEAD BOX PROTEIN 3
(HELICASE-LIKE PROTEIN 2) (HLP2) (DEAD BOX, X ISOFORM)
>gi|2148924 (U50553) helicase like protein 2 [Homo
sapiens] >gi|3523150|gb|AAC34298.1| (AF061337) DEAD box
RNA helicase DDX3 [Homo sapiens]
Length = 662
Score = 192 bits (484), Expect = 4e-48
Identities = 121/368 (32%), Positives = 194/368 (51%), Gaps = 27/368 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + I +E ++ +PT VQ+ IPI+ RDL+ ++TGSGKT FLLPI +
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I +D L ++ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 242 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 300
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 301 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 359
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 360 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + S LL L AT + ++F TK D + FL G IHGD R
Sbjct: 419 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538
Query: 339 GTAITLYS 346
G A + ++
Sbjct: 539 GLATSFFN 546
sp|P16381|PL10_MOUSE PUTATIVE ATP-DEPENDENT RNA HELICASE PL10 >gi|110038|pir||A32378
probable ATP-dependent RNA helicase - mouse >gi|200389
(J04847) PL10 protein [Mus musculus]
Length = 660
Score = 192 bits (484), Expect = 4e-48
Identities = 121/368 (32%), Positives = 194/368 (51%), Gaps = 27/368 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + I +E ++ +PT VQ+ IPI+ RDL+ ++TGSGKT FLLPI +
Sbjct: 181 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 240
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I TD L ++ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 241 IYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 299
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 300 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 358
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 359 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + + LL L AT + ++F TK D + FL G IHGD R
Sbjct: 418 VVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 477
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 478 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537
Query: 339 GTAITLYS 346
G A + ++
Sbjct: 538 GLATSFFN 545
pir||S23696 probable ATP-dependent RNA helicase - Escherichia coli
Length = 421
Score = 192 bits (482), Expect = 6e-48
Identities = 118/353 (33%), Positives = 192/353 (53%), Gaps = 13/353 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF+DF + + LE F T +Q +P+ L+GRD+ G+++TG+GKT FL F
Sbjct: 10 KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
+ D +++ +A+I AP+RELA QI+ A+ + L++ GG +Q+
Sbjct: 70 YLHSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATG-LKLGLAYGGDGYDKQL 128
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF- 173
K LES ++IGT GR+ D K N + + V+DEAD D+GF+ D+ +
Sbjct: 129 KVLESGVD-ILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
Query: 174 --GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQL 231
+R+ ML FSAT+ +++ + ++N ++ + I+ L +L
Sbjct: 188 PANQRLNML-FSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRL 246
Query: 232 LLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLD 291
L L + P A+IFANTK R ++I L ++G +V + GDV ++R RI++ D
Sbjct: 247 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306
Query: 292 YQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITL 344
+VATD+AARG+ I V+H+ N ++P D +VHR+GR+GR G G +I+L
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359
sp|P24229|RHLB_ECOLI PUTATIVE ATP-DEPENDENT RNA HELICASE RHLB >gi|1790214 (AE000454)
putative ATP-dependent RNA helicase [Escherichia coli]
Length = 421
Score = 192 bits (482), Expect = 6e-48
Identities = 118/353 (33%), Positives = 192/353 (53%), Gaps = 13/353 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF+DF + + LE F T +Q +P+ L+GRD+ G+++TG+GKT FL F
Sbjct: 10 KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
+ D +++ +A+I AP+RELA QI+ A+ + L++ GG +Q+
Sbjct: 70 YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATG-LKLGLAYGGDGYDKQL 128
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF- 173
K LES ++IGT GR+ D K N + + V+DEAD D+GF+ D+ +
Sbjct: 129 KVLESGVD-ILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
Query: 174 --GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQL 231
+R+ ML FSAT+ +++ + ++N ++ + I+ L +L
Sbjct: 188 PANQRLNML-FSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRL 246
Query: 232 LLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLD 291
L L + P A+IFANTK R ++I L ++G +V + GDV ++R RI++ D
Sbjct: 247 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306
Query: 292 YQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITL 344
+VATD+AARG+ I V+H+ N ++P D +VHR+GR+GR G G +I+L
Sbjct: 307 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359
gb|AAF19985.1|AF212866_1 (AF212866) abstrakt protein [Drosophila melanogaster]
Length = 619
Score = 191 bits (481), Expect = 8e-48
Identities = 120/364 (32%), Positives = 190/364 (51%), Gaps = 15/364 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF-- 60
F + F I L + PT +Q + +P VL+GRDL+G + TGSGKT F+LP+
Sbjct: 179 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 238
Query: 61 ---QKIDTDLDEVQA---VITAPSRELATQIYKAAQEFTKVND-----KLRVSNFVGGTD 109
Q+ + + +I PSRELA Q ++ Q ++K ++R +GG
Sbjct: 239 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 298
Query: 110 KARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQI 169
+ + + S H+V+ TPGR+ D++ L + +DEAD +DMGF DV I
Sbjct: 299 VSEALDVI-SRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 357
Query: 170 ASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN 229
S F + Q L+FSAT+P+K+Q F + L PV + S + + K +
Sbjct: 358 FSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 417
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
LL + T P + +IFA K VD IH +L G++ IHG ER R +++ +
Sbjct: 418 VYLLDCLQKTAPPV-LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRV 476
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
+VATD+A++G+D V H+IN ++P D+ +VHR+GR+GR+ +G A TL + +
Sbjct: 477 GKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 536
Query: 350 DSSI 353
+ S+
Sbjct: 537 EQSV 540
gb|AAF04040.1|AF187729_1 (AF187729) DEAD-box protein abstrakt [Drosophila melanogaster]
Length = 614
Score = 191 bits (481), Expect = 8e-48
Identities = 120/364 (32%), Positives = 190/364 (51%), Gaps = 15/364 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF-- 60
F + F I L + PT +Q + +P VL+GRDL+G + TGSGKT F+LP+
Sbjct: 174 FREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMF 233
Query: 61 ---QKIDTDLDEVQA---VITAPSRELATQIYKAAQEFTKVND-----KLRVSNFVGGTD 109
Q+ + + +I PSRELA Q ++ Q ++K ++R +GG
Sbjct: 234 ALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSCLAMGGLP 293
Query: 110 KARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQI 169
+ + + S H+V+ TPGR+ D++ L + +DEAD +DMGF DV I
Sbjct: 294 VSEALDVI-SRGVHIVVATPGRLMDMLDKKILTLDMCRYLCMDEADRMIDMGFEEDVRTI 352
Query: 170 ASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN 229
S F + Q L+FSAT+P+K+Q F + L PV + S + + K +
Sbjct: 353 FSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQVEYVKQEAKV 412
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
LL + T P + +IFA K VD IH +L G++ IHG ER R +++ +
Sbjct: 413 VYLLDCLQKTAPPV-LIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEERSRAVDAYRV 471
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
+VATD+A++G+D V H+IN ++P D+ +VHR+GR+GR+ +G A TL + +
Sbjct: 472 GKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKGLATTLINKTT 531
Query: 350 DSSI 353
+ S+
Sbjct: 532 EQSV 535
sp|P24346|AN3_XENLA PUTATIVE ATP-DEPENDENT RNA HELICASE AN3 >gi|103989|pir||S13654
ATP-dependent RNA helicase - African clawed frog
>gi|65060|emb|CAA40605| (X57328) ATP dependent RNA
helicase [Xenopus laevis]
Length = 697
Score = 191 bits (481), Expect = 8e-48
Identities = 119/378 (31%), Positives = 197/378 (51%), Gaps = 27/378 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + I ++ ++ +PT VQ+ IPI++ RDL+ ++TGSGKT FLLPI +
Sbjct: 223 FHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 282
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I D + +Q +++ AP+RELA QIY+ A++F ++R
Sbjct: 283 IYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFA-YRSRVRPCVV 341
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 342 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 400
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R Q ++FSAT P+++Q + +L + + S+ I
Sbjct: 401 QIRRIVEQDTMPPKGVR-QTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQK 459
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + LL L AT + ++F TK D + FL G IHGD R
Sbjct: 460 VVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSIHGDRSQR 519
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 520 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 579
Query: 339 GTAITLYSPSDDSSIREI 356
G A + ++ + + +++
Sbjct: 580 GLATSFFNEKNINITKDL 597
gi|3435312 (AF083255) RNA helicase-related protein [Homo sapiens]
Length = 709
Score = 190 bits (479), Expect = 1e-47
Identities = 115/357 (32%), Positives = 187/357 (52%), Gaps = 11/357 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F F F + + + ++ +PT +Q + +P+ LSGRD++G +KTGSGKT F+ P+
Sbjct: 136 FAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIH 195
Query: 63 IDTDLDEVQ------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
I D E++ AVI P+REL QI+ + F K + LR GG Q K
Sbjct: 196 I-MDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYN-LRSVAVYGGGSMWEQAKA 253
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
L+ +V+ TPGR+ D +K A + + V DEAD DMGF V IAS
Sbjct: 254 LQEGA-EIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPD 312
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW--LVSTKGSSHNQLLLQ 234
Q L+FSAT +K++ + L +P+ + ++ + ++ + S N L +
Sbjct: 313 RQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRR 372
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L + T+ ++F K +++ + L G + +HGD+ ER ++++ K D
Sbjct: 373 LVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPV 432
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS 351
+VATD+AARG+DI + +IN ++ +D+ HR+GR+GR G +G A TL +P D +
Sbjct: 433 LVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSN 489
gi|2286151 (AF007580) translation initiation factor [Zea mays]
Length = 414
Score = 190 bits (479), Expect = 1e-47
Identities = 116/359 (32%), Positives = 196/359 (54%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D ++ + + + FEKP+ +Q++ I G D++ ++++G+GKT TF I Q+
Sbjct: 43 FDDMGLQENLLRGIYRYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESS 120
+D L E QA++ AP+RELA QI K + + D L +V VGGT R+ +++ S
Sbjct: 103 LDYGLVECQALVLAPTRELAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILGS 158
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+ D+++ +L FV+DEAD L GF + I ++Q+
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKIQVG 218
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKAT 239
VFSAT+P + +K+++ PV + + + I+ + V+ K L L +
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETL 278
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF NT+ +VD + + S V+ HGD+ R IM ++ + ++ TD
Sbjct: 279 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 338
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 339 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDIQK 397
emb|CAB70750.1| (AL137462) hypothetical protein [Homo sapiens]
Length = 635
Score = 190 bits (478), Expect = 2e-47
Identities = 117/369 (31%), Positives = 192/369 (51%), Gaps = 16/369 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + N +N + + K T VQ+ IPI+L+GRDL+ ++TGSGKT FLLPI
Sbjct: 199 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPIL 258
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
+ D L E + +I AP+REL QIY A++F+ +R GGT
Sbjct: 259 AHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFS-FGTCVRAVVIYGGTQLG 317
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
I+++ +++ TPGR+ D+I + + V+DEAD LDMGF ++ ++ S
Sbjct: 318 HSIRQIVQGC-NILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLIS 376
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVISDTIENWLVSTKGS 226
G ++ Q L+FSAT P+++Q ++L N + + ++ ++
Sbjct: 377 CPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQF 436
Query: 227 SHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
S + L+++ + M+F TK + D I FL + IHGD RER++ +
Sbjct: 437 SKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 496
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+ +VAT +AARG+DIE V H+IN ++P + +VHR+GR+GR G G AI+ +
Sbjct: 497 FRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 556
Query: 347 PSDDSSIRE 355
D+ + +
Sbjct: 557 LESDNHLAQ 565
gb|AAF04150.1|AF195417_1 (AF195417) DEAD-box protein abstrakt [Homo sapiens]
Length = 621
Score = 190 bits (478), Expect = 2e-47
Identities = 116/364 (31%), Positives = 191/364 (51%), Gaps = 15/364 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF-- 60
F + F I + L+ PT +Q + IP +LSGRD++G + TGSGKT F LP+
Sbjct: 182 FKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMF 241
Query: 61 -----QKIDTDLDE-VQAVITAPSRELATQIYKAAQEFTKVNDK-----LRVSNFVGGTD 109
+++ E +I PSRELA Q + + + ++ + LR + +GG
Sbjct: 242 CLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMS 301
Query: 110 KARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQI 169
Q++ + H+++ TPGR+ DL++ + + +DEAD +DMGF D+ I
Sbjct: 302 VKEQMETIRHGV-HMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTI 360
Query: 170 ASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN 229
S F + Q L+FSAT+P+K+Q F K L PV + S + + K +
Sbjct: 361 FSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKM 420
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
LL+ + T P + +IFA K VD IH +L G++ IHG ER + + + +
Sbjct: 421 VYLLECLQKTPPPV-LIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE 479
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
+VATD+A++G+D + H+IN ++P+++ +VHR+GR+GR+G G A T + +
Sbjct: 480 GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC 539
Query: 350 DSSI 353
D S+
Sbjct: 540 DESV 543
sp|P41382|IF4U_TOBAC EUKARYOTIC INITIATION FACTOR 4A-10 (EIF-4A-10)
>gi|1362118|pir||S55898 translation initiation factor
eIF-4A.10 - common tobacco >gi|475213|emb|CAA55642|
(X79009) translation initiation factor (eIF-4A)
[Nicotiana tabacum] >gi|475216|emb|CAA55641| (X79008)
translation initiation factor (eIF-4A) [Nicotiana
tabacum]
Length = 413
Score = 190 bits (478), Expect = 2e-47
Identities = 114/341 (33%), Positives = 190/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + V + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQK 396
gi|476338 (U08102) putative RNA helicase [Caenorhabditis elegans]
Length = 417
Score = 190 bits (478), Expect = 2e-47
Identities = 118/372 (31%), Positives = 198/372 (52%), Gaps = 13/372 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K I + + + FE P+EVQ + IP + G D+V ++K+G GKT F++ Q+
Sbjct: 42 FRDFLLKPEILRAIGDCGFEHPSEVQHECIPQAILGMDVVCQAKSGMGKTAVFVITTLQQ 101
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
++ EV V +RELA QI K + F+K ++V+ F GG + ++L + P
Sbjct: 102 LEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCP 161
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEAD-MTLDMGFLADVDQIASSFGKRVQMLV 181
H+V+GTPGR+ L +S L + FV+DE D M D DV +I Q+++
Sbjct: 162 HIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIK-------QVMM 214
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVIS-DTIENWLVSTKGSSHNQLLLQLTKATN 240
FSAT+P++L+ K+++ +P+ + ++ ++ ++ V K + N+ LL L A
Sbjct: 215 FSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLNLLDALE 274
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
+IF R + +H LT IH + ER + K+ + +VATD+
Sbjct: 275 FNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQAFKDFQKRILVATDL 334
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD----SSIREI 356
RG+DIE V+ + N ++P+D ++HRV R+GR G +G AIT S +D +S+++
Sbjct: 335 FGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDR 394
Query: 357 EKMGVTFQPKAI 368
+ +T P+ I
Sbjct: 395 FDISITELPEKI 406
emb|CAB51741.1| (AJ245475) RNA helicase-1 [Plasmodium cynomolgi]
Length = 398
Score = 190 bits (477), Expect = 2e-47
Identities = 112/342 (32%), Positives = 192/342 (55%), Gaps = 8/342 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I +L+G D +G++++G+GKT TF++ Q I+ D QA+I AP+RE
Sbjct: 43 FEKPSAIQQRGIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPTRE 102
Query: 81 LATQIYKAAQEFTKVNDKLRVSNF--VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + D L+V VGGT I KL+ H+V+GTPGR++D+I
Sbjct: 103 LAQQIQKVV---LALGDYLKVKCHACVGGTVVREDIDKLKQGV-HMVVGTPGRVYDMIDK 158
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
L V F++DEAD L GF A + ++ +Q+ +FSAT+PQ++ +++
Sbjct: 159 RHLGVDRLKLFILDEADEMLSRGFKAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFM 218
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
+P + + + I + V+ + L L + ++I+ NT+ +VD +
Sbjct: 219 RDPKTILVKKDELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDIL 278
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ + V+ +HGD+ ++R IM ++ + +V TD+ ARGID++ VS +IN +
Sbjct: 279 TQEMHNRLFTVSCMHGDMDQKDRDLIMREFRSGSTRVLVTTDLLARGIDVQQVSLVINYD 338
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
+P ++HR+GRSGR G +G AI + +DD +++K+
Sbjct: 339 LPCSPDTYIHRIGRSGRFGRKGVAIN-FVTNDDKEKDKLKKI 379
emb|CAA07483| (AJ007376) DBY protein [Mus musculus]
Length = 658
Score = 190 bits (477), Expect = 2e-47
Identities = 119/368 (32%), Positives = 193/368 (52%), Gaps = 27/368 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + I +E ++ +PT VQ+ IPI+ RDL+ ++TGSGKT FLLPI +
Sbjct: 181 FSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 240
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I TD L ++ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 241 IYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 299
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 300 YGGADTVQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 358
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 359 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 417
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + LL L AT + ++F TK D + +FL IHGD +
Sbjct: 418 VVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYACTSIHGDRSQK 477
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 478 DREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 537
Query: 339 GTAITLYS 346
G A + ++
Sbjct: 538 GLATSFFN 545
ref|NP_011932.1|RRP3| RRP3 is a DEAD box gene homologous to eIF-4a which encodes an
RNA-dependent ATPase possessing helicase activity which
is not specific for RNA; Rrp3p
>gi|731667|sp|P38712|RRP3_YEAST ATP-DEPENDENT RRNA
HELICASE RRP3 >gi|626623|pir||S46713 hypothetical
protein YHR065c - yeast (Saccharomyces cerevisiae)
>gi|487961 (U00061) Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 190 bits (477), Expect = 2e-47
Identities = 126/387 (32%), Positives = 191/387 (48%), Gaps = 8/387 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F++ N + Q +N+ + KPT +Q K IP L G D++G ++TGSGKT F +PI +
Sbjct: 125 FSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILNR 184
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+ D + A I AP+RELA QI + + +R + VGG + Q + L +P
Sbjct: 185 LWHDQEPYYACILAPTRELAQQIKETFDSLGSLMG-VRSTCIVGGMNMMDQARDL-MRKP 242
Query: 123 HVVIGTPGRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML- 180
H++I TPGR+ D L + + V+DEAD LDM F +D+I + +
Sbjct: 243 HIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPTQERTTY 302
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN 240
+FSAT+ K+ + L NPV ++NK DT+ L+ G N L+ L
Sbjct: 303 LFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFI 362
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
+IF TK + + +HGD+ +R ++ K +VATD+
Sbjct: 363 GKTMIIFTRTKANAERLSGLCNLLEFSATALHGDLNQNQRMGSLDLFKAGKRSILVATDV 422
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMG 360
AARG+DI V ++N +IP D ++HRVGR+ R G G +I+L S D I IE++
Sbjct: 423 AARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYDLELILRIEEVL 482
Query: 361 VTFQPKAIKDGEIV----DSYDRDRRE 383
PK D I+ DS D+ E
Sbjct: 483 GKKLPKESVDKNIILTLRDSVDKANGE 509
pir||S53813 probable RNA helicase - slime mold (Dictyostelium discoideum)
>gi|1076843|pir||S49262 RNA helicase - slime mold
(Dictyostelium discoideum) (fragment)
>gi|550331|emb|CAA57418| (X81824) putative RNA helicase
[Dictyostelium discoideum]
Length = 566
Score = 190 bits (477), Expect = 2e-47
Identities = 122/386 (31%), Positives = 199/386 (50%), Gaps = 38/386 (9%)
Query: 7 NFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI--- 63
N I + + + +EKP+ +Q + IPI L+GRD++G ++TGSGKT F++P+ I
Sbjct: 151 NLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQ 210
Query: 64 -----DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGT---DKARQIK 115
DT+ D A++ AP+REL QI K + F + + RV + VGG D+A Q+
Sbjct: 211 PRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQ-HFGFRVVSLVGGQSIEDQAYQVS 269
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADV----DQIAS 171
K ++I TPGR++D ++ L+++ N V+DEADM +D+GF V D + S
Sbjct: 270 K----GCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADMMIDLGFEPQVTSVLDAMPS 325
Query: 172 SFGKRVQ-----------------MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISD 214
SF K ++FSAT+P ++ KKYL P I + D
Sbjct: 326 SFLKSEDDEMAEKQESDRSHIYRTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVD 385
Query: 215 TIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHG 273
I ++ K + + L QL K P +IF N K D I L + +H
Sbjct: 386 RIRQTVIFVKSENDKKEHLTQLIKDGPPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHS 445
Query: 274 DVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSG 333
+R+ + K Y+ ++AT +A+RGI ++GV+H+IN +IPK++ + HR+GR+G
Sbjct: 446 GRSQEQREAALEGFKKRKYEVLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTG 505
Query: 334 RNGLQGTAITLYSPSDDSSIREIEKM 359
R G G A + + D + +++++
Sbjct: 506 RAGSAGLASSFITDKDVEIMYDLKQI 531
gb|AAF19805.1| (AF180356) EIF4A protein [Brassica oleracea]
Length = 354
Score = 189 bits (476), Expect = 3e-47
Identities = 113/341 (33%), Positives = 190/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L + QA++ AP+RE
Sbjct: 1 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYTLVQCQALVLAPTRE 60
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 61 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 116
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I +VQ+ VFSAT+P + +K++
Sbjct: 117 QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFM 176
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 177 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 236
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 237 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFD 296
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 297 LPTQPENYLHRIGRSGRFGRKGVAINFMTTDDERMLSDIQK 337
gb|AAC28543.1| (AC004665) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 528
Score = 189 bits (476), Expect = 3e-47
Identities = 118/367 (32%), Positives = 194/367 (52%), Gaps = 8/367 (2%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + FEKP+ +QE+ IPI L+G D++ +K G+GKT F +P +
Sbjct: 155 EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLE 214
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
KID + + +QAVI P+RELA Q + +E +K K+ V GGT I +L Q
Sbjct: 215 KIDPENNVIQAVILVPTRELALQTSQVCKELSKYL-KIEVMVTTGGTSLRDDIMRL--YQ 271
Query: 122 P-HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P H+++GTPGRI DL K ++ V+DEAD L + F ++++ + Q+L
Sbjct: 272 PVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQIL 331
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKAT 239
+FSAT P ++ F +YL P + + ++ + + + V + H L L
Sbjct: 332 MFSATFPVTVKSFKDRYLKKPYIINLMDQLTLMGVTQYYAFVEERQKVH--CLNTLFSKL 389
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF N+ RV+ + +T G IH + R R+ + +N + +V TD
Sbjct: 390 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTD 449
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-K 358
+ RGIDI+ V+ +IN + P+ ++HRVGRSGR G G A+ L + D + + E +
Sbjct: 450 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 509
Query: 359 MGVTFQP 365
+G +P
Sbjct: 510 LGTEIKP 516
emb|CAB08305| (Z95120) rhlE [Mycobacterium tuberculosis]
Length = 527
Score = 189 bits (476), Expect = 3e-47
Identities = 112/363 (30%), Positives = 187/363 (50%), Gaps = 22/363 (6%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F +D I + L ++P +QE +P+ L G D++G+++TG GKT F +P+ Q+
Sbjct: 12 FAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQR 71
Query: 63 IDTD------LDEVQAVITAPSRELATQI---------YKAA----QEFTKVNDKLRVSN 103
I + +A++ P+REL Q+ Y A + V +L V +
Sbjct: 72 ITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVVS 131
Query: 104 FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFL 163
GG QI+ L + VV+GTPGR+ DL + L + + V+DEAD LD+GFL
Sbjct: 132 IYGGRPYEPQIEALRAGAD-VVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190
Query: 164 ADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNP--VMQKIANKTVISDTIENWLV 221
D+++I Q ++FSAT+P + + ++ P + + + + + D E ++
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250
Query: 222 STKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERK 281
+L+ ++ +A + MIF TK + LT G V +HGD+ R+
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310
Query: 282 RIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTA 341
+ + + + +VATD+AARGIDI+ V+H+IN + P+D +VHR+GR+GR G G A
Sbjct: 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370
Query: 342 ITL 344
+TL
Sbjct: 371 VTL 373
pir||S30675 mmrA protein - Escherichia coli >gi|148184 (M87049) member of DEAD
helicase family [Escherichia coli]
Length = 421
Score = 189 bits (476), Expect = 3e-47
Identities = 117/353 (33%), Positives = 191/353 (53%), Gaps = 13/353 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF+DF + + LE F T +Q +P+ L+GRD+ G+++TG+GKT FL F
Sbjct: 10 KFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
+ D +++ +A+I AP+RELA QI+ A+ + L++ GG +Q+
Sbjct: 70 YLLSHPAIADRKVNQPRALIMAPTRELAVQIHADAEPLAEATG-LKLGLAYGGDGYDKQL 128
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF- 173
K LES ++IGT GR+ D K N + + V+DEAD D+GF+ D+ +
Sbjct: 129 KVLESGVD-ILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
Query: 174 --GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQL 231
+R+ ML FSAT+ +++ + ++N ++ + I+ L +L
Sbjct: 188 PANQRLNML-FSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRL 246
Query: 232 LLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLD 291
L L + P A+IFANTK R ++I L ++G +V + GDV ++R RI++ D
Sbjct: 247 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGD 306
Query: 292 YQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITL 344
+VATD+AA G+ I V+H+ N ++P D +VHR+GR+GR G G +I+L
Sbjct: 307 LDILVATDVAAXGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 359
pir||S52017 translation initiation factor eIF-4A.9 - common tobacco
Length = 413
Score = 189 bits (475), Expect = 4e-47
Identities = 114/359 (31%), Positives = 198/359 (54%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F K+ + + + FEKP+ +Q++ I G D++ ++++G+GKT TF + Q+
Sbjct: 42 FDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 101
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESS 120
+D +L E QA++ AP+RELA QI K + + D L +V VGGT R+ +++ SS
Sbjct: 102 LDYELLECQALVLAPTRELAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILSS 157
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+ D+++ +L FV+DEAD L GF + I ++Q+
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKAT 239
VFSAT+P + +K+++ PV + + + I+ + V+ K + L L +
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF NT+ +VD + + S V+ HGD+ R IM ++ + ++ TD
Sbjct: 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 337
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P ++HR+GRSGR G +G +I + D+ + +I++
Sbjct: 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQR 396
ref|NP_006377.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide (72kD)
>gi|3122595|sp|Q92841|DD17_HUMAN PROBABLE RNA-DEPENDENT
HELICASE P72 (DEAD-BOX PROTEIN P72) (DEAD BOX PROTEIN
17) >gi|1592565 (U59321) DEAD-box protein p72 [Homo
sapiens] >gi|2832596|emb|CAB09792.1| (Z97056) dJ434P1.3
(DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 17 (72kD))
[Homo sapiens]
Length = 650
Score = 189 bits (475), Expect = 4e-47
Identities = 118/367 (32%), Positives = 192/367 (52%), Gaps = 13/367 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F NF Y+ L + F +PT +Q + P+ LSGRD+VG ++TGSGKT +LLP
Sbjct: 94 FHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVH 153
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I+ D ++ AP+RELA Q+ + A ++ K + +L+ + GG K QI+ L
Sbjct: 154 INHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCS-RLKSTCIYGGAPKGPQIRDL 212
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
E + I TPGR+ D ++S + V+DEAD LDMGF + +I
Sbjct: 213 ERGV-EICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 271
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTV-----ISDTIENWLVSTKGSSHNQLL 232
Q L++SAT P++++ + +L + + N + I ++ + S K QL+
Sbjct: 272 QTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLM 331
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
++ A +IF TK R DD+ + +G IHGD ER ++N ++
Sbjct: 332 EEIM-AEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKA 390
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
++ATD+A+RG+D+E V +IN + P +VHR+GR+ R+ +GTA T ++P +
Sbjct: 391 PILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQ 450
Query: 353 IREIEKM 359
RE+ K+
Sbjct: 451 ARELIKV 457
gi|2341061 (U73459) translational initiation factor eIF-4A [Zea mays]
Length = 414
Score = 189 bits (474), Expect = 5e-47
Identities = 115/359 (32%), Positives = 197/359 (54%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D ++ + + + FEKP+ +Q++ I G D++ ++++G+GKT TF I Q+
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESS 120
+D L E QA++ AP+RELA QI K + + D L +V VGGT R+ +++ +S
Sbjct: 103 LDYGLVECQALVLAPTRELAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILAS 158
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+ D+++ +L FV+DEAD L GF + I ++Q+
Sbjct: 159 GVHVVVGTPGRVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVG 218
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKAT 239
VFSAT+P + +K+++ PV + + + I+ + V+ K L L +
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLDTLCDLYETL 278
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF NT+ +VD + + S V+ HGD+ R IM ++ + ++ TD
Sbjct: 279 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 338
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P ++HR+GRSGR G +G AI + ++ + +I+K
Sbjct: 339 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDNERMLFDIQK 397
pir||S52023 translation initiation factor eIF-4A.14 - common tobacco
Length = 413
Score = 189 bits (474), Expect = 5e-47
Identities = 114/341 (33%), Positives = 189/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
PV + V + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 SKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQK 396
prf||1705301A ATP dependent RNA helicase [Xenopus laevis]
Length = 697
Score = 189 bits (474), Expect = 5e-47
Identities = 118/378 (31%), Positives = 196/378 (51%), Gaps = 27/378 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + I ++ ++ +PT VQ+ IPI++ RDL+ ++TGSGKT FLLPI +
Sbjct: 223 FHDVTMGEIIMGNIQLTRYTRPTPVQKHAIPIIIEKRDLMACAQTGSGKTAAFLLPILSQ 282
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I D + +Q +++ AP+RELA QIY+ A++F ++R
Sbjct: 283 IYADGPGDAMKHLQENGRYGRRKQFPLSLVLAPTRELAVQIYEEARKFA-YRSRVRPCVV 341
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG D +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 342 YGGADIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 400
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R Q ++FSAT P+++Q + +L + + S+ I
Sbjct: 401 QIRRIVEQDTMPPKGVR-QTMMFSATFPKEIQILARDFLDEYIFLAVGRVGSTSENITQK 459
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + LL L AT + ++F TK D + FL G IHGD R
Sbjct: 460 VVWVEEMDKRDFLLDLLNATGKDSLTLVFVETKKGADALEDFLYEEGYACTSIHGDRSQR 519
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +V R+GR+GR G
Sbjct: 520 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVERIGRTGRVGNL 579
Query: 339 GTAITLYSPSDDSSIREI 356
G A + ++ + + +++
Sbjct: 580 GLATSFFNEKNINITKDL 597
sp|Q40467|IF4Y_TOBAC EUKARYOTIC INITIATION FACTOR 4A-14 (EIF-4A-14)
>gi|485943|emb|CAA55742| (X79141) NeIF-4A14 [Nicotiana
tabacum]
Length = 413
Score = 189 bits (474), Expect = 5e-47
Identities = 114/341 (33%), Positives = 189/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
PV + V + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 SKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQK 396
emb|CAB38795.1| (AL035678) putative protein [Arabidopsis thaliana]
Length = 542
Score = 188 bits (473), Expect = 7e-47
Identities = 115/356 (32%), Positives = 184/356 (51%), Gaps = 19/356 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D F + + L++ PT +Q + +P+VLSGRD++G + TGSGKT F+LP+
Sbjct: 99 FMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMI-- 156
Query: 63 IDTDLDEVQ----------AVITAPSRELATQIYKAAQEFTK--VND---KLRVSNFVGG 107
I +E+ A++ PSRELA Q Y ++F V D +LR +GG
Sbjct: 157 ILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGG 216
Query: 108 TDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVD 167
D Q+ ++ H+V+ TPGR+ D++ + + +DEAD +D+GF D+
Sbjct: 217 VDMRSQLDVVKKGV-HIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIR 275
Query: 168 QIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSS 227
+ F + Q L+FSAT+P K+Q F L PV + + + + K +
Sbjct: 276 HVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAGAANLDVIQEVEYVKQEA 335
Query: 228 HNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSI 287
LL+ + T P + +IF K VDDIH +L G++ IHG +R ++
Sbjct: 336 KIVYLLECLQKTTPPV-LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLF 394
Query: 288 KNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAIT 343
K +VATD+A++G+D + H+IN ++P ++ +VHR+GR+GR G G A T
Sbjct: 395 KAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIATT 450
gi|2829912 (AC002291) Similar ATP-dependent RNA Helicase [Arabidopsis
thaliana]
Length = 845
Score = 188 bits (473), Expect = 7e-47
Identities = 122/397 (30%), Positives = 201/397 (49%), Gaps = 11/397 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N + ++ ++ PT +Q K +P++LSG D+V ++TGSGKT FL+P+ +K
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 63 IDTDLDE--VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+ + + V+A+I +P+R+LA Q K +E K D LRVS VGG Q ++L
Sbjct: 90 LKQHVPQGGVRALILSPTRDLAEQTLKFTKELGKFTD-LRVSLLVGGDSMEDQFEELTKG 148
Query: 121 QPHVVIGTPGRI-HDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
P V+I TPGR+ H L + + + + T V DEAD MGF + QI + + Q
Sbjct: 149 -PDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQT 207
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKA- 238
L+FSAT+P L F K L P + ++ + IS ++ ++ + LL L +
Sbjct: 208 LLFSATLPSALAEFAKAGLREPQLVRLDVENKISPDLKLSFLTVRPEEKYSALLYLVREH 267
Query: 239 -TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
++ +IF +TK V+ ++ ++ + +GD+ RK ++ + ++
Sbjct: 268 ISSDQQTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIV 327
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TDIAARGIDI + ++IN + P FVHRVGR+ R G G A + +P D + ++
Sbjct: 328 TDIAARGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLH 387
Query: 358 KMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEIST 394
F K ++ D ++ E TK I +
Sbjct: 388 ----LFLSKPVRPAPTEDEVLKNMEEVMTKTSQAIDS 420
ref|NP_034158.1|| DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 3
>gi|2500528|sp|Q62167|DDX3_MOUSE DEAD BOX PROTEIN 3
(DEAD-BOX RNA HELICASE DEAD3) (MDEAD3) (EMBRYONIC RNA
HELICASE) (D1PAS1 RELATED SEQUENCE 2) >gi|407996
(L25126) RNA helicase [Mus musculus]
>gi|1835122|emb|CAA86261| (Z38117) dead-box RNA helicase
[Mus musculus] >gi|1098036|prf||2115205A RNA helicase
[Mus musculus]
Length = 662
Score = 188 bits (473), Expect = 7e-47
Identities = 119/368 (32%), Positives = 192/368 (51%), Gaps = 27/368 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F+D + I +E ++ +PT VQ+ IPI+ RDL+ ++TGSGKT FLLPI +
Sbjct: 182 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 241
Query: 63 IDTD-----LDEVQ-------------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNF 104
I D L ++ +++ AP+RELA QIY+ A++F+ ++R
Sbjct: 242 IYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS-YRSRVRPCVV 300
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLA 164
GG + +QI+ LE H+++ TPGR+ D+++ + + V+DEAD LDMGF
Sbjct: 301 YGGAEIGQQIRDLERGC-HLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEP 359
Query: 165 DVDQIASSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ +I G R M+ FSAT P+++Q + +L + + S+ I
Sbjct: 360 QIRRIVEQDTMPPKGVRHTMM-FSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 418
Query: 220 LVSTKGSSHNQLLLQLTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + LL L AT + ++F TK D + FL G IHGD R
Sbjct: 419 VVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQR 478
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
+R+ ++ ++ +VAT +AARG+DI V H+IN ++P D+ +VHR+GR+GR G
Sbjct: 479 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL 538
Query: 339 GTAITLYS 346
G A + ++
Sbjct: 539 GLATSFFN 546
sp|Q61496|DDX4_MOUSE DEAD BOX PROTEIN 4 (VASA HOMOLOG) (MVH) >gi|2137271|pir||I49638
Drosophila vasa homologue - mouse (fragment)
>gi|286075|dbj|BAA03584| (D14859) Drosophila vasa
homologue [Mus musculus]
Length = 637
Score = 188 bits (473), Expect = 7e-47
Identities = 117/369 (31%), Positives = 190/369 (50%), Gaps = 16/369 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + N +N + + K T VQ+ IPIVL+GRDL+ ++TGSGKT FLLPI
Sbjct: 202 LTFEEANLCQTLNNNIRKAGYTKLTPVQKYTIPIVLAGRDLMACAQTGSGKTAAFLLPIL 261
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
+ D L E + +I AP+REL QIY A++F+ + V + GGT
Sbjct: 262 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVISVVIY-GGTQFG 320
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
++++ +++ TPGR+ D+I + + V+DEAD LDMGF ++ ++ S
Sbjct: 321 HSVRQIVQGC-NILCATPGRLMDIIGKEKIGLKQVKYLVLDEADSMLDMGFAPEIKKLIS 379
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVISDTIENWLVSTKGS 226
G ++ Q L+FSAT P+++Q +L N + + ++ ++
Sbjct: 380 CPGMPSKEQHQTLLFSATFPEEIQRLAGDFLKSNYLFVAVGQVGGACRDVQQTILQVGQY 439
Query: 227 SHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
+ LL+ + M+F TK + D I FL + IHGD RER++ +
Sbjct: 440 QKEKSLLRFYENIGDERTMVFVETKKKADFIATFLCQEKISSTSIHGDREQREREQALGD 499
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+ +VAT +AARG+DIE V H+IN ++P + +VHR+GR+GR G G AI+ +
Sbjct: 500 FRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFD 559
Query: 347 PSDDSSIRE 355
D+ + +
Sbjct: 560 TDSDNHLAQ 568
sp|Q40471|IF49_TOBAC EUKARYOTIC INITIATION FACTOR 4A-9 (EIF-4A-9)
>gi|485951|emb|CAA55736| (X79135) NeIF-4A9 [Nicotiana
tabacum]
Length = 413
Score = 188 bits (473), Expect = 7e-47
Identities = 114/359 (31%), Positives = 198/359 (54%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F K+ + + + FEKP+ +Q++ I G D++ ++++G+GKT TF I Q+
Sbjct: 42 FDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 101
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESS 120
+D +L + QA++ AP+RELA QI K + + D L +V VGGT R+ +++ SS
Sbjct: 102 LDYELLDCQALVLAPTRELAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILSS 157
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+ D+++ +L FV+DEAD L GF + I ++Q+
Sbjct: 158 GVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 217
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKAT 239
VFSAT+P + +K+++ PV + + + I+ + V+ K + L L +
Sbjct: 218 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF NT+ +VD + + S V+ HGD+ R IM ++ + ++ TD
Sbjct: 278 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 337
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P ++HR+GRSGR G +G +I + D+ + +I++
Sbjct: 338 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTSDDERMLSDIQR 396
gb|AAF21155.1|AC010926_7 (AC010926) putative Eukaryotic initiation factor 4A [Arabidopsis
thaliana]
Length = 414
Score = 188 bits (472), Expect = 9e-47
Identities = 113/341 (33%), Positives = 189/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L + QA++ AP+RE
Sbjct: 61 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRE 120
Query: 81 LATQIYKAAQEFTKVNDKLRVSN--FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L V VGGT R+ +++ S HVV+GTPGR+ DL++
Sbjct: 121 LAQQIEKVMRA---LGDYLGVKAQACVGGTS-VREDQRVLQSGVHVVVGTPGRVFDLLRR 176
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I +VQ+ VFSAT+P + +K++
Sbjct: 177 QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFM 236
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 237 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 296
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 297 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFD 356
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I++
Sbjct: 357 LPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQR 397
emb|CAA09211| (AJ010472) RNA helicase [Arabidopsis thaliana]
Length = 441
Score = 188 bits (472), Expect = 9e-47
Identities = 113/341 (33%), Positives = 189/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L + QA++ AP+RE
Sbjct: 88 FEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRE 147
Query: 81 LATQIYKAAQEFTKVNDKLRVSN--FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L V VGGT R+ +++ S HVV+GTPGR+ DL++
Sbjct: 148 LAQQIEKVMRA---LGDYLGVKAQACVGGTS-VREDQRVLQSGVHVVVGTPGRVFDLLRR 203
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I +VQ+ VFSAT+P + +K++
Sbjct: 204 QSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFM 263
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 264 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 323
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 324 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFD 383
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I++
Sbjct: 384 LPTQPENYLHRIGRSGRFGRKGVAINFMTSEDERMMADIQR 424
sp|Q40468|IF4Z_TOBAC EUKARYOTIC INITIATION FACTOR 4A-15 (EIF-4A-15)
>gi|485945|emb|CAA55739| (X79138) NeIF-4A15 [Nicotiana
tabacum]
Length = 413
Score = 188 bits (472), Expect = 9e-47
Identities = 113/341 (33%), Positives = 192/341 (56%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF I Q++ +L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLAYELLECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V+ VGGT R+ +++ SS HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVTACVGGTS-VREDQRILSSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I++
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQR 396
ref|NP_010121.1|DHH1| (putative) DEAD box RNA helicase; Dhh1p
>gi|729329|sp|P39517|DHH1_YEAST PUTATIVE ATP-DEPENDENT
RNA HELICASE DHH1 >gi|320822|pir||S31229 probable RNA
helicase DHH1 - yeast (Saccharomyces cerevisiae)
>gi|4353|emb|CAA46853| (X66057) RNA-helicase of the
DEAD-BOX family [Saccharomyces cerevisiae]
>gi|1061279|emb|CAA91586| (Z67750) putative RNA helicase
[Saccharomyces cerevisiae] >gi|1431254|emb|CAA98734|
(Z74208) ORF YDL160c [Saccharomyces cerevisiae]
Length = 506
Score = 188 bits (472), Expect = 9e-47
Identities = 110/356 (30%), Positives = 186/356 (51%), Gaps = 3/356 (0%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K + + FEKP+ +QE+ IP+ ++GRD++ +K G+GKT F++P +K
Sbjct: 48 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 107
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
+ L+++QA+I P+RELA Q + + K + + GGT+ I +L +
Sbjct: 108 VKPKLNKIQALIMVPTRELALQTSQVVRTLGK-HCGISCMVTTGGTNLRDDILRLNET-V 165
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
H+++GTPGR+ DL + + F++DEAD L F ++QI S Q L+F
Sbjct: 166 HILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLF 225
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT P ++ F+ K+LH P + + + I + + L L
Sbjct: 226 SATFPLTVKEFMVKHLHKPYEINLMEELTLKG-ITQYYAFVEERQKLHCLNTLFSKLQIN 284
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
A+IF N+ RV+ + +T G H + +ER ++ + + + +V +D+
Sbjct: 285 QAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 344
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
RGIDI+ V+ +IN + PK ++HR+GRSGR G G AI L + +D ++ +IE+
Sbjct: 345 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQ 400
sp|P41378|IF4A_WHEAT EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|478306|pir||JN0839
translation initiation factor eIF-4A - wheat
Length = 414
Score = 188 bits (472), Expect = 9e-47
Identities = 114/359 (31%), Positives = 195/359 (53%), Gaps = 7/359 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D ++ + + + FEKP+ +Q++ I G D++ ++++G+GKT TF I Q+
Sbjct: 43 FDDMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQ 102
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESS 120
+D L E QA++ AP+RELA QI K + + D L +V VGGT R+ +++ +S
Sbjct: 103 LDYGLVECQALVLAPTRELAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILAS 158
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
HVV+GTPGR+ D+++ +L FV+DEAD L GF + I ++Q+
Sbjct: 159 GVHVVVGTPGRVFDIVRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVG 218
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKAT 239
VFSAT+P + +K+++ PV + + + I+ + V+ + L L +
Sbjct: 219 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLDTLCDLYETL 278
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF NT+ +VD + + V+ HGD+ R IM ++ + ++ TD
Sbjct: 279 AITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 338
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ ARGID++ VS +IN ++P + HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 339 LLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQK 397
sp|P41376|IF41_ARATH EUKARYOTIC INITIATION FACTOR 4A-1 (EIF-4A-1) >gi|322503|pir||JC1452
translation initiation factor eIF-4A1 - Arabidopsis
thaliana >gi|16554|emb|CAA46188| (X65052) eukaryotic
translation initiation factor 4A-1 [Arabidopsis
thaliana]
Length = 412
Score = 188 bits (472), Expect = 9e-47
Identities = 111/341 (32%), Positives = 189/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L + QA++ AP+RE
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRE 118
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ + HVV+GTPGR+ D++K
Sbjct: 119 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQAGVHVVVGTPGRVFDMLKR 174
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 175 QSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 234
Query: 199 HNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDI 257
PV + + + I+ + V+ + + L L + ++IF NT+ +VD +
Sbjct: 235 SKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 294
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 295 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFD 354
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 355 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395
pir||S52020 translation initiation factor eIF-4A.15 - common tobacco
Length = 413
Score = 187 bits (471), Expect = 1e-46
Identities = 112/341 (32%), Positives = 192/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++ +L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLAYELLECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V+ VGGT R+ +++ SS HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVTACVGGTS-VREDQRILSSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I++
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQR 396
sp|P41379|IF42_NICPL EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|100275|pir||S22578
translation initiation factor eIF-4A - curled-leaved
tobacco >gi|19697|emb|CAA43513| (X61205) nicotiana
eukaryotic translation initiation factor 4A [Nicotiana
plumbaginifolia]
Length = 413
Score = 187 bits (471), Expect = 1e-46
Identities = 113/341 (33%), Positives = 190/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQK 396
sp|Q64060|DDX4_RAT DEAD BOX PROTEIN 4 (VASA HOMOLOG) (RVLG) >gi|1083795|pir||JC2534
RVLG protein - rat >gi|806464|bbs|159938 (S75275)
vasa-like gene protein, RVLG protein=putative DEAD box
protein [rats, Wistar-Imanishi, testis, Peptide, 713 aa]
[Rattus sp.]
Length = 713
Score = 187 bits (470), Expect = 2e-46
Identities = 117/369 (31%), Positives = 190/369 (50%), Gaps = 16/369 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + N +N + + K T VQ+ IPIVL+GRDL+ ++TGSGKT FLLPI
Sbjct: 273 LTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPIL 332
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
+ D L E + +I AP+REL QIY A++F+ +R GGT
Sbjct: 333 AHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFS-FGTCVRAVVIYGGTQFG 391
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
I+++ +++ TPGR+ D+I + + V+DEAD LDMGF ++ ++ S
Sbjct: 392 HSIRQIVQGC-NILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMGFGPEMKKLIS 450
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVISDTIENWLVSTKGS 226
G ++ Q L+FSAT P+++Q ++L N + + ++ ++
Sbjct: 451 CPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPV 510
Query: 227 SHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
+ L+++ + M+F TK + D I FL + IHGD RER++ +
Sbjct: 511 FKKRKLVEILRNIGDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGD 570
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
+ +VAT +AARG+DIE V H+IN +P + +VHR+GR+GR G G AI+ +
Sbjct: 571 FRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNTGRAISFFD 630
Query: 347 PSDDSSIRE 355
D+ + +
Sbjct: 631 TESDNHLAQ 639
pir||S52019 translation initiation factor eIF-4A.7 - common tobacco
Length = 413
Score = 187 bits (469), Expect = 2e-46
Identities = 112/341 (32%), Positives = 189/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + V + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDEVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ + V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI D+ + +I++
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQR 396
sp|Q41741|IF4A_MAIZE EUKARYOTIC INITIATION FACTOR 4A (EIF-4A) >gi|603190 (U17979)
translation initiation factor eIF-4A [Zea mays]
Length = 410
Score = 187 bits (469), Expect = 2e-46
Identities = 112/341 (32%), Positives = 190/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF I Q++D L E QA++ AP+RE
Sbjct: 57 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 116
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ +S HVV+GTPGR+ D+++
Sbjct: 117 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILASGVHVVVGTPGRVFDMLRR 172
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 173 QSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFM 232
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K L L + ++IF NT+ +VD +
Sbjct: 233 NKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNTRRKVDWL 292
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 293 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 352
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + ++++
Sbjct: 353 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERIVFDVQR 393
pir||I51235 DEAD box protein - African clawed frog (fragment) >gi|2896107
(AF046043) DEAD box protein [Xenopus laevis]
Length = 700
Score = 187 bits (469), Expect = 2e-46
Identities = 114/368 (30%), Positives = 195/368 (52%), Gaps = 18/368 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + N + + + + + K T VQ+ IPI+++GRDL+ ++TGSGKT FLLPI
Sbjct: 274 LTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPIL 333
Query: 61 QKIDTD---------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
+ + L E +A+I AP+REL QIY A++F+ +R GG
Sbjct: 334 SYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFS-YGTCVRPVVVYGGIQPV 392
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
++ +E +++ TPGR+ D++ + + V+DEAD LDMGF +++++ +
Sbjct: 393 HAMRDVEKGC-NILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMGFAPEIEKLMT 451
Query: 172 SFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKT--VISDTIENWLVSTKG 225
G ++ Q L+FSAT P++++ YL + + + SD + ++ +
Sbjct: 452 KPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQT-VLEMRE 510
Query: 226 SSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMN 285
+ + LL++ K++ MIF NTK + D I +L IHGD +R+ +
Sbjct: 511 NGKMEKLLEILKSSEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALW 570
Query: 286 SIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLY 345
+ +V T +AARG+DIE V H+IN ++PK++ +VHR+GR+GR G G A + +
Sbjct: 571 DFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKATSFF 630
Query: 346 SPSDDSSI 353
+ DD I
Sbjct: 631 NVQDDHVI 638
sp|Q40470|IF47_TOBAC EUKARYOTIC INITIATION FACTOR 4A-7 (EIF-4A-7)
>gi|485949|emb|CAA55738| (X79137) NeIF-4A7 [Nicotiana
tabacum]
Length = 413
Score = 187 bits (469), Expect = 2e-46
Identities = 112/341 (32%), Positives = 189/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + V + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDDVTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ + V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI D+ + +I++
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVIKDDERMLSDIQR 396
emb|CAB71054.1| (AL137898) DEAD box RNA helicase RH12 [Arabidopsis thaliana]
Length = 498
Score = 186 bits (467), Expect = 4e-46
Identities = 115/367 (31%), Positives = 194/367 (52%), Gaps = 8/367 (2%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + + FEKP+ +QE+ IPI L+G D++ +K G+GKT F +P+ +
Sbjct: 125 EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE 184
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
KID + + +QA+I P+RELA Q + +E +K + ++V GGT I +L Q
Sbjct: 185 KIDPNNNVIQAMILVPTRELALQTSQVCKELSKYLN-IQVMVTTGGTSLRDDIMRLH--Q 241
Query: 122 P-HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P H+++GTPGRI DL K ++ V+DEAD L F ++++ + Q L
Sbjct: 242 PVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFL 301
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKAT 239
+FSAT P ++ F ++L P + + ++ + + + V + H L L
Sbjct: 302 MFSATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVH--CLNTLFSKL 359
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF N+ RV+ + +T G IH + R R+ + +N + +V TD
Sbjct: 360 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTD 419
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-K 358
+ RGIDI+ V+ +IN + P+ ++HRVGRSGR G G A+ L + D + + E +
Sbjct: 420 LFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQE 479
Query: 359 MGVTFQP 365
+G +P
Sbjct: 480 LGTEIKP 486
emb|CAB65518.1| (AJ011564) ATP-dependent RNA helicase [Yarrowia lipolytica]
Length = 523
Score = 185 bits (466), Expect = 5e-46
Identities = 116/366 (31%), Positives = 197/366 (53%), Gaps = 7/366 (1%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K + + FE P+ +QE+ IPI L+GRD++ +K G+GKT F++P Q+
Sbjct: 30 FEDFFLKRELLMGIFEAGFENPSPIQEEAIPIALAGRDILARAKNGTGKTAAFVIPALQQ 89
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP 122
++ ++++QA+I P+RELA Q + + K + ++V GGT+ I +LE +
Sbjct: 90 VNPKVNKIQALIMVPTRELALQTSQVCKTLGK-HLGIKVMVTTGGTNLRDDIMRLEDT-V 147
Query: 123 HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV-QMLV 181
HV++GTPGR+ DL + + F++DEAD L F ++Q+ F Q+LV
Sbjct: 148 HVLVGTPGRVLDLAGRKVADLSESPMFIMDEADKLLSPDFTPIIEQVLHFFPWTTRQILV 207
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKATN 240
FSAT P ++ F+ + LH P + ++ + + + V K H L L +
Sbjct: 208 FSATSPLTVKAFMDRNLHKPYEINLMDELTLRGITQYYAFVDEKQKLH--CLNTLFSKLD 265
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
++IF N+ RV+ + +T G H + R R+ + +N + +V +D+
Sbjct: 266 INQSIIFCNSTVRVELLARKITELGYSCYYSHAKMIQSHRNRVFHEFRNGTCRNLVCSDL 325
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KM 359
RGIDI+ V+ +IN + PK+ ++HR+GRSGR G G AI L + +D ++ +IE ++
Sbjct: 326 LTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGIAINLINWNDRYNLYKIEQEL 385
Query: 360 GVTFQP 365
G +P
Sbjct: 386 GTEIKP 391
sp|P41381|IF48_TOBAC EUKARYOTIC INITIATION FACTOR 4A-8 (EIF-4A-8)
>gi|2119931|pir||S60244 translation initiation factor
eIF-4A.8, anther-specific - common tobacco
>gi|475219|emb|CAA55639| (X79004) translation initiation
factor (eIF-4A) [Nicotiana tabacum]
>gi|475221|emb|CAA55640| (X79005) translation initiation
factor (eIF-4A) [Nicotiana tabacum]
Length = 413
Score = 185 bits (466), Expect = 5e-46
Identities = 111/341 (32%), Positives = 191/341 (55%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF I Q++D L + QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ ++ HV++GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILAAGVHVIVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I +VQ+ VFSAT+P + +K++
Sbjct: 176 QSLRPDYLRMFVLDEADEMLSRGFKDQIYDIFQMLPTKVQVGVFSATMPPEALDITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ + V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+GRSGR G +G AI + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQK 396
gb|AAD26468.1| (AF140505) DEAD box RNA helicase [Candida albicans]
Length = 578
Score = 185 bits (464), Expect = 8e-46
Identities = 117/400 (29%), Positives = 209/400 (52%), Gaps = 16/400 (4%)
Query: 9 KDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI----D 64
K ++ ++N +F +PT +Q + IPI L+ RDL+ + TGSGKT FL+P+ Q+I
Sbjct: 140 KKVLSNLIDN-EFIEPTPIQCESIPITLNNRDLIACAPTGSGKTLAFLIPLVQQILSKNV 198
Query: 65 TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHV 124
+ ++ +I +P+ ELA QI++ + T+ ++ V+ ++SS+ +
Sbjct: 199 SKNHGIRGLIISPTNELAVQIFQELEIITRGCKQINVAILSKQLASKLNNNIIKSSKYDI 258
Query: 125 VIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS-SFGKRVQMLVFS 183
++ TP R+ D++K + + ++DEAD D GF D+I + +++ +FS
Sbjct: 259 IVSTPLRLIDVVKQGNMDLSKIEQLIIDEADKLFDHGFAEQTDEILTHCTNLKIRKSIFS 318
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLL---QLTKATN 240
ATIP ++ + +P+ I +K S+TI+ LV T G+ +LL + +
Sbjct: 319 ATIPSSVEEMAHSIMKDPLRIIIGHKEAASNTIDQKLVFT-GNEQGKLLAIRQMIQQGEF 377
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
+IF + R + H L + L V IH + P++R+ ++ KN D ++ TD+
Sbjct: 378 KPPIIIFLQSITRAKALFHELLYDRLNVDVIHAERTPKQREEVIKRFKNGDIWVLITTDV 437
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMG 360
ARG+D +GV+ +IN ++P+ +VHR+GR+GR G G A+T ++ DD +I+ I +
Sbjct: 438 LARGVDFKGVNLVINYDVPQSAQAYVHRIGRTGRGGKAGKAVTFFTKEDDKAIKPILNV- 496
Query: 361 VTFQPKAIKDGE---IVDSYDRDRREKRTKKQDEISTKTI 397
+ DG + D ++EK+ K EI K I
Sbjct: 497 --MKQSGCNDGYSQWMEDMGKLSKKEKKQIKTHEIQRKKI 534
emb|CAB03765.1| (Z81449) similar to ATP-dependent RNA helicase; cDNA EST
EMBL:D37484 comes from this gene; cDNA EST EMBL:D64936
comes from this gene; cDNA EST yk371b5.3 comes from this
gene; cDNA EST yk371b5.5 comes from this gene; cDNA EST
...
Length = 811
Score = 185 bits (464), Expect = 8e-46
Identities = 127/390 (32%), Positives = 199/390 (50%), Gaps = 12/390 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F F+F + + + ++E+PT +Q IP LSGRD++G +KTGSGKT +L P
Sbjct: 267 FAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVH 326
Query: 63 I--DTDLDEVQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
I DL + AVI P+RELA Q+++ A++F KV + + + GG+ K Q +L
Sbjct: 327 IMDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGS-KWEQSNEL 385
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
++ +V+ TPGRI DL+K A V DEAD DMGF A V I+
Sbjct: 386 QNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPDR 445
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIEN--WLVSTKGSSHNQLLLQL 235
Q L+FSAT QK++ + L +PV + IE +++ + + L+ L
Sbjct: 446 QCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNL 505
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
+ + +IF K +D+ L + +HGD+ ER + + Q +
Sbjct: 506 VEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKKS-QIL 564
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
VATD+AARG+DI + +IN ++ +D+ VHR+GR+GR G +GTA TL + D +
Sbjct: 565 VATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVGH 624
Query: 356 IEKMGVTFQ---PKAIKDGEIVDSYDRDRR 382
+ K + PK + D + S+ R +R
Sbjct: 625 LVKNLESVSQEVPKPLMDLAMKSSWFRGQR 654
sp|Q40465|IF4V_TOBAC EUKARYOTIC INITIATION FACTOR 4A-11 (EIF-4A-11)
>gi|485987|emb|CAA55737| (X79136) NeIF-4A11 [Nicotiana
tabacum]
Length = 413
Score = 185 bits (464), Expect = 8e-46
Identities = 111/341 (32%), Positives = 188/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF I Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+G SGR G +G +I + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQK 396
emb|CAA09214| (AJ010475) RNA helicase [Arabidopsis thaliana]
Length = 789
Score = 184 bits (463), Expect = 1e-45
Identities = 113/380 (29%), Positives = 200/380 (51%), Gaps = 10/380 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + N + + E + ++KPT +Q IP+ L+GRDL + TGSGKT F LP ++
Sbjct: 169 FMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLER 228
Query: 63 I---DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ + + +I P+RELA QI+ Q + D ++ VGG R+ + +
Sbjct: 229 LLFRPKRVFATRVLILTPTRELAVQIHSMIQNLAQFTD-IKCGLIVGGLS-VREQEVVLR 286
Query: 120 SQPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQ 178
S P +V+ TPGR+ D ++++ + + ++DEAD L GF ++ ++ KR Q
Sbjct: 287 SMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQ 346
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVS---TKGSSHNQLLLQL 235
++FSAT+ ++++ +K L+ P+ + +V T+ ++ +LL L
Sbjct: 347 TMLFSATMTEEVKELVKLSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSL 406
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
T +IF+ TK + GLK A++HG++ +R + + + ++
Sbjct: 407 CTRTFKSKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFL 466
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
+ATD+AARG+DI GV +IN P+++ +VHRVGR+ R G +G A+T + SD S ++
Sbjct: 467 IATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKV 526
Query: 356 I-EKMGVTFQPKAIKDGEIV 374
I +K+G + + I + IV
Sbjct: 527 IAKKVGSKLKSRVIPEQSIV 546
pir||S52018 translation initiation factor eIF-4A.11 - common tobacco
Length = 413
Score = 184 bits (463), Expect = 1e-45
Identities = 110/341 (32%), Positives = 188/341 (54%), Gaps = 7/341 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L E QA++ AP+RE
Sbjct: 60 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYSLVECQALVLAPTRE 119
Query: 81 LATQIYKAAQEFTKVNDKL--RVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
LA QI K + + D L +V VGGT R+ +++ S HVV+GTPGR+ D+++
Sbjct: 120 LAQQIEKVMRA---LGDYLGVKVHACVGGTS-VREDQRILQSGVHVVVGTPGRVFDMLRR 175
Query: 139 NALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYL 198
+L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 176 QSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFM 235
Query: 199 HNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDI 257
+ PV + + + I+ + V+ K + L L + ++IF NT+ +VD +
Sbjct: 236 NKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 295
Query: 258 HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDE 317
+ V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN +
Sbjct: 296 TDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 355
Query: 318 IPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+P ++HR+G SGR G +G +I + D+ + +I+K
Sbjct: 356 LPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQK 396
emb|CAA09203| (AJ010464) RNA helicase [Arabidopsis thaliana]
Length = 498
Score = 184 bits (462), Expect = 1e-45
Identities = 112/348 (32%), Positives = 186/348 (53%), Gaps = 8/348 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +QE+ IPI L+G D++ +K G+GKT F +P+ +KID + + +QA+I P+RE
Sbjct: 144 FEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRE 203
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQP-HVVIGTPGRIHDLIKSN 139
LA Q + +E +K + ++V GGT I +L QP H+++GTPGRI DL K
Sbjct: 204 LALQTSQVCKELSKYLN-IQVMVTTGGTSLRDDIMRLH--QPVHLLVGTPGRILDLTKKG 260
Query: 140 ALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLH 199
++ V+DEAD L F ++++ + Q L+FSAT P ++ F ++L
Sbjct: 261 VCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLR 320
Query: 200 NPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIH 258
P + + ++ + + + V + H L L ++IF N+ RV+ +
Sbjct: 321 KPYVINLMDQLTLMGVTQYYAFVEERQKVH--CLNTLFSKLQINQSIIFCNSVNRVELLA 378
Query: 259 HFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEI 318
+T G IH + R R+ + +N + +V TD+ RGIDI+ V+ +IN +
Sbjct: 379 KKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDF 438
Query: 319 PKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMGVTFQP 365
P+ ++HRVGRSGR G G A+ L + D + + E ++G +P
Sbjct: 439 PRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEIKP 486
sp|Q09903|YAJ3_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C30D11.03
>gi|2130403|pir||S62561 hypothetical protein
SPAC30D11.03 - fission yeast (Schizosaccharomyces pombe)
>gi|1065890|emb|CAA91889.1| (Z67961) ATP dependent RNA
helicase [Schizosaccharomyces pombe]
Length = 754
Score = 184 bits (462), Expect = 1e-45
Identities = 120/398 (30%), Positives = 203/398 (50%), Gaps = 16/398 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N I + L N+ FE PT++Q+K IP+ L G+D+VG + TGSGKT F++PI ++
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 63 I---DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ + + +I P+RELA Q + A + D + V +GG Q ++L
Sbjct: 321 LLYRPKKVPTTRVLILCPTRELAMQCHSVATKIASFTD-IMVCLCIGGLSLKLQEQELRK 379
Query: 120 SQPHVVIGTPGRIHDLIK-SNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQ 178
+P +VI TPGR D ++ S V V+DEAD L+ GF ++++I + K Q
Sbjct: 380 -RPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQACPKSRQ 438
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSH---NQLLLQL 235
++FSAT+ K+ ++ L+ PV + NK + + V + +L+ L
Sbjct: 439 TMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAMLIYL 498
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
K +IF +K + L +IHG + +R R + ++ Y+
Sbjct: 499 CKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYL 558
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
+ATD+A+RGIDI+G+ +IN E P ++HRVGR+ R G G AITL D ++
Sbjct: 559 LATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKG 618
Query: 356 IEKMGVTFQPKAIKDGEIVD-SYDRDRREKRTKKQDEI 392
+ F+ + ++ ++V+ + D ++ EK K+ +E+
Sbjct: 619 V------FKNSSAQNTKLVNRNLDFNKVEKFGKEIEEL 650
sp|P41377|IF42_ARATH EUKARYOTIC INITIATION FACTOR 4A-2 (EIF-4A-2) >gi|322504|pir||JC1453
translation initiation factor eIF-4A2 - Arabidopsis
thaliana >gi|16556|emb|CAA46189| (X65053) eukaryotic
translation initiation factor 4A-2 [Arabidopsis
thaliana] >gi|4585969|gb|AAD25605.1|AC005287_7
(AC005287) Eukaryotic Initiation Factor 4A-2
[Arabidopsis thaliana]
Length = 412
Score = 184 bits (462), Expect = 1e-45
Identities = 108/339 (31%), Positives = 186/339 (54%), Gaps = 3/339 (0%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FEKP+ +Q++ I G D++ ++++G+GKT TF + Q++D L + QA++ AP+RE
Sbjct: 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRE 118
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA QI K + ++V VGGT R+ +++ + HVV+GTPGR+ D+++ +
Sbjct: 119 LAQQIEKVMRALGDYQG-VKVHACVGGTS-VREDQRILQAGVHVVVGTPGRVFDMLRRQS 176
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHN 200
L FV+DEAD L GF + I ++Q+ VFSAT+P + +K++
Sbjct: 177 LRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSK 236
Query: 201 PVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKATNPYMAMIFANTKGRVDDIHH 259
PV + + + I+ + V+ + + L L + ++IF NT+ +VD +
Sbjct: 237 PVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTD 296
Query: 260 FLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIP 319
+ S V+ HGD+ R IM ++ + ++ TD+ ARGID++ VS +IN ++P
Sbjct: 297 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLP 356
Query: 320 KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
++HR+GRSGR G +G AI + D + +I+K
Sbjct: 357 TQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQK 395
gb|AAD40318.1|AF158370_1 (AF158370) DEAD-box RNA helicase [Gallus gallus]
Length = 595
Score = 183 bits (461), Expect = 2e-45
Identities = 111/367 (30%), Positives = 195/367 (52%), Gaps = 15/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + NF + + ++ F +PT +Q + P+ LSG D+VG ++TGSGKT ++LLP
Sbjct: 82 INFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 141
Query: 61 QKIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
I+ D ++ AP+RELA Q+ + A E+++ +L+ + GG K QI+
Sbjct: 142 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYSRAC-RLKSTCIYGGAPKGPQIR 200
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
LE + I TPGR+ D +++ + V+DEAD LDMGF + +I
Sbjct: 201 DLERGV-EICIATPGRLIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP 259
Query: 176 RVQMLVFSATIPQKL----QPFLKKYLHNPV--MQKIANKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P+++ + FLK+Y+H + ++ AN ++ I + +
Sbjct: 260 DRQTLMWSATWPKEVRQLAEDFLKEYVHINIGALELSANHNILQ--IVDVCHDVEKDDKL 317
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L++ + ++F TK R DD+ + +G IHGD +ER ++N K+
Sbjct: 318 IRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 377
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
++ATD+A+RG+D+E V +IN + P ++HR+GR+ R+ GTA T ++P++
Sbjct: 378 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 437
Query: 350 DSSIREI 356
+ ++
Sbjct: 438 IKQVNDL 444
gb|AAF23311.1|AC016661_36 (AC016661) putative RNA helicase [Arabidopsis thaliana]
Length = 545
Score = 183 bits (460), Expect = 2e-45
Identities = 116/399 (29%), Positives = 198/399 (49%), Gaps = 18/399 (4%)
Query: 6 FNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDT 65
+ + YI + L + F++PT +Q + IPI+LSGR+ + TGSGKT F+ P+ K+
Sbjct: 146 YGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKV 205
Query: 66 -----DLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
D ++AVI +P+RELA Q + ++ K + K KL
Sbjct: 206 LNCRPSTDGIRAVILSPARELAAQTAREGKKLIK-GSNFHIRLMTKPLVKTADFSKLWCD 264
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK-RVQM 179
V+I TP R+ IK+ + + V+DE+D + L +D + + +
Sbjct: 265 ---VLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIR 321
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLL---QLT 236
+FSAT+P ++ + +H+ V I K S+T++ LV GS +LL
Sbjct: 322 SLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVFA-GSEEGKLLALRQSFA 380
Query: 237 KATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVV 296
++ NP + +IF +K R +++ L ++ IH D+PP ER+ ++ + + ++
Sbjct: 381 ESLNPPV-LIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAVDQFRAGEKWVLI 439
Query: 297 ATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREI 356
ATD+ ARG+D +G++ +IN + P + ++HR+GRSGR G G AIT Y+ D +R I
Sbjct: 440 ATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNI 499
Query: 357 EKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTK 395
T + + S + + K ++D ISTK
Sbjct: 500 AN---TMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTK 535
dbj|BAA34993.1| (AB017002) DjVLGA [Dugesia japonica]
Length = 726
Score = 183 bits (460), Expect = 2e-45
Identities = 120/407 (29%), Positives = 207/407 (50%), Gaps = 23/407 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + ++ + ++ +PT VQ +PI++ RDL+ ++TGSGKT FL+P+
Sbjct: 213 FLELKLHPIVSHNISLTQYTRPTPVQRYAVPIIMQRRDLMACAQTGSGKTAAFLIPLLSM 272
Query: 63 IDTD------------LDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDK 110
+ D + A+I AP+RELA QIY A++F+ +R GG D
Sbjct: 273 MYQDGPGNSLSHSGYKKEYPVALILAPTRELAVQIYDEARKFS-YRSLVRPCVVYGGRDI 331
Query: 111 ARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIA 170
Q++ + S ++++ TPGR+ D+++ + + V+DEAD LDMGF + +I
Sbjct: 332 RGQLQDI-SQGCNMLVATPGRLSDMLERCKIGLDCIRYLVLDEADRMLDMGFEPQIRKIV 390
Query: 171 SSF-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-K 224
G+R Q L+FSAT P+++Q +L + + ++ S I +V +
Sbjct: 391 EQTNMPPPGQR-QTLMFSATFPREIQMLASDFLKDYLFLRVGKVGSTSQNITQRIVYVDE 449
Query: 225 GSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIM 284
+ LL LT + + ++F TK D + FL + G VA IHGD +R+ +
Sbjct: 450 NEKRDHLLDILTDIDSDSLILVFVETKRGADALEGFLHTEGSCVASIHGDRSQSDRELAL 509
Query: 285 NSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITL 344
S + +VAT +AARG+DI V +IN ++P D+ +VHR+GR+GR G G AI+
Sbjct: 510 QSFREGSTPILVATRVAARGLDIPNVKFVINYDLPTDIEEYVHRIGRTGRVGNLGEAISF 569
Query: 345 YSPSDDSSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDE 391
Y+ +++ +E+ + + + I + D R+ + K+Q +
Sbjct: 570 YTDKNNNVAKEL--VDILLEANQIVPDWLRDKIGEAHRQMQMKQQQK 614
emb|CAB68189.1| (AL137082) ATP-dependent RNA helicase-like protein [Arabidopsis
thaliana]
Length = 603
Score = 183 bits (459), Expect = 3e-45
Identities = 117/372 (31%), Positives = 189/372 (50%), Gaps = 22/372 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + D +N + K+ +PT VQ IPI+L+ RDL+ ++TGSGKT F PI
Sbjct: 153 FADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISG 212
Query: 63 IDTDLDEVQ----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKAR 112
I D + AVI +P+RELA QI+ A++F+ ++V GGT +
Sbjct: 213 IMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFS-YQTGVKVVVAYGGTPIHQ 271
Query: 113 QIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASS 172
Q+++LE +++ TPGR++DL++ + + +DEAD LDMGF + +I
Sbjct: 272 QLRELERGCD-ILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQ 330
Query: 173 F-----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSS 227
G R Q ++FSAT P ++Q ++ N + + +D I + + S
Sbjct: 331 MDMPPRGVR-QTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESD 389
Query: 228 HNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSI 287
L+ L A TK D + ++L N IHGD +ER+ + S
Sbjct: 390 KRSHLMDLLHAQRETQD----KTKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSF 445
Query: 288 KNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSP 347
K +VATD+AARG+DI V+H++N ++P D+ +VHR+GR+GR G G A ++
Sbjct: 446 KTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNE 505
Query: 348 SDDSSIREIEKM 359
++ R + ++
Sbjct: 506 NNAQLARSLAEL 517
gi|3845186 (AE001395) eIF-4A-like DEAD family RNA helicase [Plasmodium
falciparum]
Length = 457
Score = 183 bits (459), Expect = 3e-45
Identities = 121/401 (30%), Positives = 209/401 (51%), Gaps = 29/401 (7%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F DF K + + + FE P+EVQ++ IP ++G D++ ++K+G GKT F+L I Q+
Sbjct: 57 FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ 116
Query: 63 IDTDLDE--------------------VQAVITAPSRELATQIYKAAQEFTKVNDKLRVS 102
+DT+ ++ V+ + A +RELA QI F+K +R
Sbjct: 117 LDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAYQIKNEFDRFSKYLKNVRCE 176
Query: 103 NFVGGTDKARQIKKL-ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLD-M 160
GG + IK E + PH++IGTPGRI LI+ LI FV+DE D L+ +
Sbjct: 177 VVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLITDKIQHFVLDECDKCLEKL 236
Query: 161 GFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIAN--KTVISDTIEN 218
+DV +I S + Q++ FSAT+ ++++ KK+L NPV I + K + +++
Sbjct: 237 DMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQH 296
Query: 219 WLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+ V + + L+++ A +IF + R + LT IHG + +
Sbjct: 297 Y-VKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPSIAIHGGLEQQ 355
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
ER + K + + +V+TD+ RGIDIE V+ +IN ++P++ ++HRVGR+GR G +
Sbjct: 356 ERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTK 415
Query: 339 GTAITLYSPSDDS-SIREIE---KMGVTFQPKAIKDGEIVD 375
G A+T S +D+ ++ E++ ++ ++ P I E ++
Sbjct: 416 GLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYIN 456
gb|AAC69128.1| (U78721) putative U5 small nuclear ribonucleoprotein, an RNA
helicase [Arabidopsis thaliana]
Length = 733
Score = 183 bits (459), Expect = 3e-45
Identities = 118/371 (31%), Positives = 185/371 (49%), Gaps = 27/371 (7%)
Query: 14 QTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI--------DT 65
+ +E ++KP+ +Q IP+ L RD++G ++TGSGKT F+LP+ I +
Sbjct: 326 KAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEEN 385
Query: 66 DLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVV 125
+ + AV+ AP+RELA QI + +F RV++ VGG Q K+ +V
Sbjct: 386 ETEGPYAVVMAPTRELAQQIEEETVKFAHYLG-FRVTSIVGGQSIEEQGLKITQGC-EIV 443
Query: 126 IGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADV----DQIASSFGKRVQ--- 178
I TPGR+ D ++ +++ N V+DEAD +DMGF V D + SS K
Sbjct: 444 IATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEE 503
Query: 179 ----------MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSH 228
+FSAT+P ++ +KYL NPV+ I +D I ++ K S
Sbjct: 504 ELDEKKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEK 563
Query: 229 NQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIK 288
L +L A++F NTK D I L G +V +HG +R+ + +
Sbjct: 564 FFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFR 623
Query: 289 NLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPS 348
Y +VATD+ RGIDI V+H+IN ++PK + + HR+GR+GR G G A + +
Sbjct: 624 AKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLH 683
Query: 349 DDSSIREIEKM 359
D ++++M
Sbjct: 684 DTEVFYDLKQM 694
sp|P21693|DBPA_ECOLI ATP-DEPENDENT RNA HELICASE DBPA >gi|1742212|dbj|BAA14946| (D90773)
ATP-dependent RNA helicase DbpA. [Escherichia coli]
>gi|1787605 (AE000232) ATP-dependent RNA helicase
[Escherichia coli]
Length = 457
Score = 182 bits (458), Expect = 4e-45
Identities = 108/344 (31%), Positives = 172/344 (49%), Gaps = 2/344 (0%)
Query: 16 LENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVIT 75
L + + T VQ +P +L+G+D+ ++KTGSGKT F L + Q+ID L + QA++
Sbjct: 18 LNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVL 77
Query: 76 APSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDL 135
P+RELA Q+ + + ++ GG Q L+ + PH+++ TPGR+ D
Sbjct: 78 CPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA-PHIIVATPGRLLDH 136
Query: 136 IKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLK 195
++ + + NT V+DEAD LDMGF +D + Q L+FSAT P+ +
Sbjct: 137 LQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISG 196
Query: 196 KYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVD 255
+ +P+ +I + T IE T LL +L P ++F NTK
Sbjct: 197 RVQRDPLAIEI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQ 255
Query: 256 DIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIIN 315
+ L G +HGD+ R+R + + N + +VATD+AARG+DI+ + ++N
Sbjct: 256 AVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVN 315
Query: 316 DEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
E+ D VHR+GR+ R G G AI+ +P + I M
Sbjct: 316 FELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 359
pir||S12698 probable RNA helicase - Escherichia coli >gi|41248|emb|CAA36872|
(X52647) DEAD box protein (AA 1-432) [Escherichia coli]
Length = 432
Score = 182 bits (457), Expect = 5e-45
Identities = 107/335 (31%), Positives = 169/335 (49%), Gaps = 2/335 (0%)
Query: 25 TEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRELATQ 84
T VQ +P +L+G+D+ ++KTGSGKT F L + Q+ID L + QA++ P+RELA Q
Sbjct: 2 TPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQ 61
Query: 85 IYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVH 144
+ + + ++ GG Q L+ + PH+++ TPGR+ D ++ + +
Sbjct: 62 VAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA-PHIIVATPGRLLDHLQKGTVSLD 120
Query: 145 TANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQ 204
NT V+DEAD LDMGF +D + Q L+FSAT P+ + + +P+
Sbjct: 121 ALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAI 180
Query: 205 KIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSN 264
+I + T IE T LL +L P ++F NTK + L
Sbjct: 181 EI-DSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEV 239
Query: 265 GLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTF 324
G +HGD+ R+R + + N + +VATD+AARG+DI+ + ++N E+ D
Sbjct: 240 GQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEV 299
Query: 325 FVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM 359
VHR+GR+ R G G AI+ +P + I M
Sbjct: 300 HVHRIGRTARAGNSGLAISFCAPEEAQRANIISDM 334
dbj|BAA34521.1| (AB018344) KIAA0801 protein [Homo sapiens]
Length = 1032
Score = 181 bits (455), Expect = 9e-45
Identities = 123/367 (33%), Positives = 194/367 (52%), Gaps = 15/367 (4%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI--DTDLDE 69
I +L+ +EKPT +Q + IP ++SGRDL+G +KTGSGKT FLLP+F+ I L+E
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE 442
Query: 70 VQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
+ AVI P+RELA QI K ++F+K LRV GGT + QI +L+ +++
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLG-LRVVCVYGGTGISEQIAELKRGA-EIIV 500
Query: 127 GTPGRIHDLIKSNALIVHTAN--TFVV-DEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183
TPGR+ D++ +N+ V T+VV DEAD DMGF V +I + Q ++FS
Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFS 560
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVI-SDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
AT P+ ++ ++ L P+ ++ ++V+ SD + +V + +LL L
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
+IF + + D + L +HG + +R I+N KN + +VAT +AA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD----DSSIREIEK 358
RG+D++ + ++N P +VHR GR+GR G +G A T + I+ +E
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 359 MGVTFQP 365
G P
Sbjct: 741 SGTAVPP 747
dbj|BAA25324.1| (AB012389) Moc2 RNA helicase [Schizosaccharomyces pombe]
Length = 636
Score = 181 bits (455), Expect = 9e-45
Identities = 119/378 (31%), Positives = 191/378 (50%), Gaps = 25/378 (6%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI-- 59
+FT ++ Q ++ + +PT VQ+ IPIV SGRDL+ ++TGSGKT FL PI
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229
Query: 60 --FQK----IDTDLDEVQA----------VITAPSRELATQIYKAAQEFTKVNDKLRVSN 103
F K + D D +I AP+REL QI++ +++F +R
Sbjct: 230 LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCA 288
Query: 104 FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFL 163
GG D QI++++ ++ TPGR+ DLI + + V+DEAD LDMGF
Sbjct: 289 VYGGADIRAQIRQIDQGCD-LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 347
Query: 164 ADVDQIASSFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ I + Q L+FSAT P+ +Q + +L + V + S+ I
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQK 407
Query: 220 LVSTKGSSHNQLLLQLTKATNPY-MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + S LL + P + +IF TK D + +L ++ IHGD R
Sbjct: 408 VVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
ER+R + ++ +VAT +A+RG+DI V+H+IN ++P D+ +VHR+GR+GR G
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 527
Query: 339 GTAITLYSPSDDSSIREI 356
G A+ ++ ++ +E+
Sbjct: 528 GQAVAFFNRNNKGIAKEL 545
gi|2558968 (AF025536) suppressor of uncontrolled mitosis [Schizosaccharomyces
pombe] >gi|3080516|emb|CAA18646.1| (AL022598) suppressor
of uncontrolled mitosis. [Schizosaccharomyces pombe]
>gi|3514095 (AF084222) putative DEAD box RNA helicase
Dep1 [Schizosaccharomyces pombe]
>gi|4582232|emb|CAB40192.1| (AJ237697) putative RNA
helicase [Schizosaccharomyces pombe]
Length = 636
Score = 181 bits (455), Expect = 9e-45
Identities = 119/378 (31%), Positives = 191/378 (50%), Gaps = 25/378 (6%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI-- 59
+FT ++ Q ++ + +PT VQ+ IPIV SGRDL+ ++TGSGKT FL PI
Sbjct: 170 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 229
Query: 60 --FQK----IDTDLDEVQA----------VITAPSRELATQIYKAAQEFTKVNDKLRVSN 103
F K + D D +I AP+REL QI++ +++F +R
Sbjct: 230 LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCA 288
Query: 104 FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFL 163
GG D QI++++ ++ TPGR+ DLI + + V+DEAD LDMGF
Sbjct: 289 VYGGADIRAQIRQIDQGCD-LLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFE 347
Query: 164 ADVDQIASSFG----KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW 219
+ I + Q L+FSAT P+ +Q + +L + V + S+ I
Sbjct: 348 PQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQK 407
Query: 220 LVSTKGSSHNQLLLQLTKATNPY-MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPR 278
+V + S LL + P + +IF TK D + +L ++ IHGD R
Sbjct: 408 VVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQR 467
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
ER+R + ++ +VAT +A+RG+DI V+H+IN ++P D+ +VHR+GR+GR G
Sbjct: 468 ERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNT 527
Query: 339 GTAITLYSPSDDSSIREI 356
G A+ ++ ++ +E+
Sbjct: 528 GQAVAFFNRNNKGIAKEL 545
pir||A57514 RNA helicase HEL117 - rat >gi|897915 (U25746) RNA helicase [Rattus
norvegicus]
Length = 1032
Score = 181 bits (455), Expect = 9e-45
Identities = 123/367 (33%), Positives = 194/367 (52%), Gaps = 15/367 (4%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI--DTDLDE 69
I +L+ +EKPT +Q + IP ++SGRDL+G +KTGSGKT FLLP+F+ I L+E
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE 442
Query: 70 VQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
+ AVI P+RELA QI K ++F+K LRV GGT + QI +L+ +++
Sbjct: 443 GEGPIAVIMTPTRELALQITKECKKFSKTLG-LRVVCVYGGTGISEQIAELKRGA-EIIV 500
Query: 127 GTPGRIHDLIKSNALIVHTAN--TFVV-DEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183
TPGR+ D++ +N+ V T+VV DEAD DMGF V +I + Q ++FS
Sbjct: 501 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFS 560
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVI-SDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
AT P+ ++ ++ L P+ ++ ++V+ SD + +V + +LL L
Sbjct: 561 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 620
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
+IF + + D + L +HG + +R I+N KN + +VAT +AA
Sbjct: 621 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 680
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD----DSSIREIEK 358
RG+D++ + ++N P +VHR GR+GR G +G A T + I+ +E
Sbjct: 681 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 740
Query: 359 MGVTFQP 365
G P
Sbjct: 741 SGTAVPP 747
gi|529704 (U13070) similar to RNA helicases [Caenorhabditis elegans]
Length = 701
Score = 181 bits (454), Expect = 1e-44
Identities = 115/389 (29%), Positives = 201/389 (51%), Gaps = 38/389 (9%)
Query: 8 FKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDL 67
F D + Q ++ I + +PT +Q + IPI L RD++G ++TGSGKT FLLP+ I T L
Sbjct: 308 FPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI-TSL 366
Query: 68 DEVQ----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+++ A+I AP+RELA QI + +F K+ ++ + +GG + Q KL
Sbjct: 367 PKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFGKLLG-IKTVSVIGGASREDQGMKL 425
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIA------- 170
VVI TPGR+ D++++ L+++ ++DEAD LDMGF DV ++
Sbjct: 426 RMGV-EVVIATPGRLLDVLENRYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYMPDTN 484
Query: 171 ------------------SSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVI 212
S+ K Q ++F+AT+ ++ ++YL P + I +
Sbjct: 485 MKKDTDEFDNEEALMKGFSTREKYRQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKP 544
Query: 213 SDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIH 272
++ +E + + L+++ ++ +IF N K D + LT G K +H
Sbjct: 545 TERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGLTKLGFKPTVLH 604
Query: 273 GDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRS 332
G +R+ + ++K +VATD+A RGID++ VS ++N ++ K + + HR+GR+
Sbjct: 605 GGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRT 664
Query: 333 GRNGLQGTAITLYSPSDDSSIREIEKMGV 361
GR G G AIT +P D + +++++ +
Sbjct: 665 GRAGKHGKAITFLTPDDTAVYFDLKQVKI 693
dbj|BAA28347| (AB010259) DRH1 [Arabidopsis thaliana]
>gi|6016713|gb|AAF01539.1|AC009325_9 (AC009325) RNA
helicase, DRH1 [Arabidopsis thaliana]
Length = 619
Score = 180 bits (453), Expect = 2e-44
Identities = 113/366 (30%), Positives = 190/366 (51%), Gaps = 10/366 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F F + + + + F PT +Q + PI + GRD+V +KTGSGKT +L+P F
Sbjct: 158 MSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGF 217
Query: 61 ---QKIDTDLDEVQAVIT-APSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
Q+I D ++ +P+RELATQI + A +F + + ++ + GG K Q++
Sbjct: 218 LHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGR-SSRISCTCLYGGAPKGPQLRD 276
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
LE +V+ TPGR++D+++ + + + V+DEAD LDMGF + +I +
Sbjct: 277 LERGAD-IVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTK 335
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIAN--KTVISDTIENWLVSTKGSSHNQLLLQ 234
Q L+++AT P+ ++ L NP I N + V + +I + + L Q
Sbjct: 336 RQTLMYTATWPKGVRKIAADLLVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQ 395
Query: 235 LTKATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ ++ P +IF +TK D + LT A IHGD ER ++N ++
Sbjct: 396 ILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQ-FGAAAIHGDKSQPERDNVLNQFRSGRTP 454
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+VATD+AARG+D++ + ++N + P + +VHR+GR+GR G G A T + D
Sbjct: 455 VLVATDVAARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHA 514
Query: 354 REIEKM 359
++ K+
Sbjct: 515 SDLIKI 520
gb|AAD30599.1|AC007369_9 (AC007369) Similar to RNA helicases [Arabidopsis thaliana]
Length = 1166
Score = 180 bits (451), Expect = 3e-44
Identities = 115/380 (30%), Positives = 208/380 (54%), Gaps = 21/380 (5%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ 71
I T++ + +EKP +Q + +PI++SGRD +G +KTGSGKT F+LP+ + I D V+
Sbjct: 540 ILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIK-DQPPVE 598
Query: 72 A------VITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVV 125
A ++ AP+REL QI+ ++F+K +R GG+ A+QI +L+ +V
Sbjct: 599 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLG-IRCVPVYGGSGVAQQISELKRGT-EIV 656
Query: 126 IGTPGRIHDLIKSNA---LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+ TPGR+ D++ +++ + V+DEAD DMGF + +I + Q ++F
Sbjct: 657 VCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIRPERQTVLF 716
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN--QLLLQLTKATN 240
SAT P++++ +K L+ PV ++ ++V++ I LV + S +LL L + +
Sbjct: 717 SATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWSE 775
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
++F ++ + D ++ + + +HG +R+ ++ KN ++AT +
Sbjct: 776 KGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSV 835
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-M 359
AARG+D++ + ++N + P +VHRVGR+GR G +G A+T S D ++ K +
Sbjct: 836 AARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKAL 895
Query: 360 GVTFQP-----KAIKDGEIV 374
++ QP KA+ DG +V
Sbjct: 896 ELSEQPVPDDLKALADGFMV 915
gb|AAD43033.1| (AF106680) RNA helicase [Homo sapiens]
Length = 1031
Score = 179 bits (450), Expect = 4e-44
Identities = 122/367 (33%), Positives = 192/367 (52%), Gaps = 16/367 (4%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI--DTDLDE 69
I +L+ +EKPT +Q + IP ++SGRDL+G +KTGSGKT FLLP+F+ I L+E
Sbjct: 383 ILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEE 442
Query: 70 VQ---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
+ AVI P+RELA QI K + F + LRV GGT + QI +L+ +++
Sbjct: 443 GEGPLAVIMTPTRELALQIPKGVRSFKTLG--LRVVCVYGGTGISEQIAELKRGA-EIIV 499
Query: 127 GTPGRIHDLIKSNALIVHTAN--TFVV-DEADMTLDMGFLADVDQIASSFGKRVQMLVFS 183
TPGR+ D++ +N+ V T+VV DEAD DMGF V +I + Q ++FS
Sbjct: 500 CTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFS 559
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVI-SDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
AT P+ ++ ++ L P+ ++ ++V+ SD + +V + +LL L
Sbjct: 560 ATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLGHYQESG 619
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
+IF + + D + L +HG + +R I+N KN + +VAT +AA
Sbjct: 620 SVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLVATSVAA 679
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD----DSSIREIEK 358
RG+D++ + ++N P +VHR GR+GR G +G A T + I+ +E
Sbjct: 680 RGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDIIKALEL 739
Query: 359 MGVTFQP 365
G P
Sbjct: 740 SGTAVPP 746
prf||1406327A growth regulated nuclear 68 protein [Homo sapiens]
Length = 594
Score = 178 bits (447), Expect = 8e-44
Identities = 110/367 (29%), Positives = 190/367 (50%), Gaps = 15/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + NF + + F +PT +Q + P+ LSG D+VG ++TGSGKT ++LLP
Sbjct: 74 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 133
Query: 61 QKIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
I+ D ++ AP+RELA Q+ + A E+ + +L+ + GG K QI+
Sbjct: 134 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIR 192
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
LE + I TPGR+ D ++ + V+DEAD LDMGF + +I
Sbjct: 193 DLERGV-EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 251
Query: 176 RVQMLVFSATIPQKL----QPFLKKYLHNPV--MQKIANKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P+++ + FLK Y+H + ++ AN ++ I + +
Sbjct: 252 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ--IVDVCHDVEKDEKL 309
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L++ + ++F TK R D++ + +G IHGD +ER ++N K+
Sbjct: 310 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 369
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
++ATD+A+RG+D+E V +IN + P ++HR+GR+ R+ GTA T ++P++
Sbjct: 370 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 429
Query: 350 DSSIREI 356
+ ++
Sbjct: 430 IKQVSDL 436
ref|NP_004387.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase, 68kD)
>gi|129383|sp|P17844|DDX5_HUMAN PROBABLE RNA-DEPENDENT
HELICASE P68 (DEAD-BOX PROTEIN P68) (DEAD BOX PROTEIN 5)
>gi|1085350|pir||JC1087 RNA helicase, ATP-dependent -
human >gi|35220|emb|CAA36324| (X52104) p68 protein (AA
1-614) [Homo sapiens] >gi|38318|emb|CAA33751| (X15729)
protein p68 (AA 1-614) [Homo sapiens]
>gi|2599360|gb|AAB84094.1| (AF015812) RNA helicase p68
[Homo sapiens]
Length = 614
Score = 178 bits (447), Expect = 8e-44
Identities = 110/367 (29%), Positives = 190/367 (50%), Gaps = 15/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + NF + + F +PT +Q + P+ LSG D+VG ++TGSGKT ++LLP
Sbjct: 94 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
Query: 61 QKIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
I+ D ++ AP+RELA Q+ + A E+ + +L+ + GG K QI+
Sbjct: 154 VHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIR 212
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
LE + I TPGR+ D ++ + V+DEAD LDMGF + +I
Sbjct: 213 DLERGV-EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271
Query: 176 RVQMLVFSATIPQKL----QPFLKKYLHNPV--MQKIANKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P+++ + FLK Y+H + ++ AN ++ I + +
Sbjct: 272 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ--IVDVCHDVEKDEKL 329
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L++ + ++F TK R D++ + +G IHGD +ER ++N K+
Sbjct: 330 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 389
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
++ATD+A+RG+D+E V +IN + P ++HR+GR+ R+ GTA T ++P++
Sbjct: 390 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449
Query: 350 DSSIREI 356
+ ++
Sbjct: 450 IKQVSDL 456
sp|P47664|Y425_MYCGE PROBABLE RNA HELICASE MG425 >gi|1361462|pir||I64246 ATP-dependent
RNA helicase (deaD) homolog MG425 - Mycoplasma
genitalium (SGC3) >gi|3845018 (U39725) ATP-dependent RNA
helicase (deaD) [Mycoplasma genitalium]
Length = 449
Score = 178 bits (446), Expect = 1e-43
Identities = 123/415 (29%), Positives = 198/415 (47%), Gaps = 38/415 (9%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + + +TL + KPT++Q+ IP LS ++L+ S TG+GKT F +PI +K
Sbjct: 5 FHELGISQTLIETLNALHINKPTKIQQISIPQFLSEKNLIVHSPTGTGKTAAFAIPIIEK 64
Query: 63 I-DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
+ D ++ AP+REL QI K N KLR+ + +GG +QIKK++++
Sbjct: 65 LLKEDQTAKPTLVIAPTRELVEQIKTTFSNIAK-NKKLRIISLIGGVPAWKQIKKIKTN- 122
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
P +++GT GRI DL++ A+ ++DE D+ LD GF + + Q+ V
Sbjct: 123 PQIIVGTMGRIMDLLERKAIHFSDLEHLIIDEVDLMLDRGFKKQIFNLLEQINSFKQIAV 182
Query: 182 FSATIPQKLQPFLKKYLHN------PVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQL 235
+SA+ Q+ K+ +N P K AN T I+ ++ Q L L
Sbjct: 183 YSASYNQEAINIAKQITNNGIFIGSPEFNKDAN-TNNDKLIKQFVCYLFSDQKKQALYSL 241
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
K ++F +TK VDD+H FL N L+ +HGD R+R + N +
Sbjct: 242 IKTAQVKSIIVFCDTKKLVDDLHVFLRKNELRTFALHGDKKQFIRERNLKIFANTKQPTI 301
Query: 296 -VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD----- 349
V TD+ RGI +E + +IN +L +++R+GR+GRN +GT +T + +
Sbjct: 302 LVTTDLIGRGIHVEAIDMVINYSACLNLEAYINRMGRTGRNNHKGTCVTFCTSQEKKVFL 361
Query: 350 -------DSSIREIEKMGVTFQP-----KAIKDGEIVD----------SYDRDRR 382
D+ I E ++M + P K K G +D YDR++R
Sbjct: 362 KMVEKITDNRIAECKQMEIKLIPLKNKAKTKKGGISLDCVQKIYANAKPYDRNKR 416
ref|NP_031866.1|| DEAD (aspartate-glutamate-alanine-aspartate) box polypeptide 5
>gi|2500527|sp|Q61656|DDX5_MOUSE PROBABLE RNA-DEPENDENT
HELICASE P68 (DEAD-BOX PROTEIN P68) (DEAD BOX PROTEIN 5)
(DEAD-BOX RNA HELICASE DEAD1) (MDEAD1)
>gi|2137742|pir||I48385 RNA helicase TNZ2 - mouse
>gi|51263|emb|CAA46581| (X65627) p68 RNA helicase [Mus
musculus]
Length = 614
Score = 178 bits (446), Expect = 1e-43
Identities = 110/367 (29%), Positives = 190/367 (50%), Gaps = 15/367 (4%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ F + NF + + F +PT +Q + P+ LSG D+VG ++TGSGKT ++LLP
Sbjct: 94 LNFYEANFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAI 153
Query: 61 QKIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
I+ D ++ AP+RELA Q+ + A E+ + +L+ + GG K QI+
Sbjct: 154 VHINHHPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGPQIR 212
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
LE + I TPGR+ D ++ + V+DEAD LDMGF + +I
Sbjct: 213 DLERGV-EICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP 271
Query: 176 RVQMLVFSATIPQKL----QPFLKKYLHNPV--MQKIANKTVISDTIENWLVSTKGSSHN 229
Q L++SAT P+++ + FLK Y+H + ++ AN ++ I + +
Sbjct: 272 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQ--IVDVCHDVEKDEKL 329
Query: 230 QLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
L++ + ++F TK R D++ + +G IHGD +ER ++N K+
Sbjct: 330 IRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH 389
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSD 349
++ATD+A+RG+D+E V +IN + P ++HR+GR+ R+ GTA T ++P++
Sbjct: 390 GKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNN 449
Query: 350 DSSIREI 356
+ ++
Sbjct: 450 IKQVSDL 456
gb|AAD46404.1|AF096248_1 (AF096248) ethylene-responsive RNA helicase [Lycopersicon
esculentum]
Length = 474
Score = 177 bits (445), Expect = 1e-43
Identities = 127/380 (33%), Positives = 187/380 (48%), Gaps = 40/380 (10%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D F DY+ Q +E F +PT +Q + P+ L GRDL+G ++TGSGKT +LLP
Sbjct: 98 FHDVGFPDYVLQEIEKAGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTIAYLLPAIVH 157
Query: 63 IDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSN--FVGGTDKARQIK 115
++ D ++ AP+RELA QI QE TK R+ N GG K Q++
Sbjct: 158 VNAQPILDHGDGPIVLVLAPTRELAVQIQ---QEATKFGASSRIKNTCIYGGVPKGPQVR 214
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
L+ +VI TPGR+ D+++SN + T V+DEAD LDMGF + + S
Sbjct: 215 DLQKGV-EIVIATPGRLIDMLESNHTNLRRV-TIVLDEADRMLDMGFEPQIRKCISDTPD 272
Query: 176 RVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQL 235
R Q L +SAT P+ N +S N L K +N+L+ L
Sbjct: 273 R-QTLYWSATWPK-------------------NVNHVSSACGNRLGDQK---YNKLVKLL 309
Query: 236 TKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
+ +IF KG D + L +G IHGD ER +++ K +
Sbjct: 310 EDIMDGSRILIFRTLKG-CDQVTRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIM 368
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
ATD+AARG+D++ V +IN + P L +VHR+GR+GR G GTA T ++ ++ ++
Sbjct: 369 TATDVAARGLDVKDVKFVINYDFPGSLEDYVHRIGRTGRAGASGTAYTFFTAANARFAKD 428
Query: 356 ----IEKMGVTFQPKAIKDG 371
+E+ G P+ K G
Sbjct: 429 LVNILEEAGQKVSPELAKMG 448
pir||PC6010 Gu protein - human (fragment) >gi|2136124|pir||S72504 RNA helicase
Gu - human (fragment) >gi|1230564 (U41387) Gu protein
[Homo sapiens]
Length = 801
Score = 177 bits (445), Expect = 1e-43
Identities = 115/376 (30%), Positives = 199/376 (52%), Gaps = 31/376 (8%)
Query: 27 VQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDE------VQAVITAPSRE 80
+Q K V SG+DL+ +++TG+GKT +F +P+ +K+ +L + Q ++ AP+RE
Sbjct: 230 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLHGELQDRKRGRAPQVLVLAPTRE 289
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA Q+ K +F+ + KL V+ F GGT Q +++ + +++GTPGRI D I++
Sbjct: 290 LANQVSK---DFSDITKKLSVACFYGGTPYGGQFERMRNGID-ILVGTPGRIKDHIQNGK 345
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR-----VQMLVFSATIPQKLQPFLK 195
L + V+DE D LDMGF V++I S K+ Q L+FSAT P + K
Sbjct: 346 LDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAK 405
Query: 196 KYLHNPVMQ-----KIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMA--MIFA 248
KY+ + Q K KT I T+E+ + + ++ + + + + +IF
Sbjct: 406 KYMKSTYEQVDLIGKKTQKTAI--TVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFC 463
Query: 249 NTKGRVDDIHHFLTSNGLK--VAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGID 306
TK ++ ++ +K +HGD+P ++R+ + +N + +VAT++AARG+D
Sbjct: 464 ETKKEAQELSQ---NSAIKQDAQSLHGDIPQKQREITLKGFRNGSFGVLVATNVAARGLD 520
Query: 307 IEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMGVTFQP 365
I V +I PKD+ ++HR GR+GR G G I Y ++ + ++E K G+ F+
Sbjct: 521 IPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKR 580
Query: 366 KAIKDG-EIVDSYDRD 380
+ EI+ + +D
Sbjct: 581 IGVPSATEIIKASSKD 596
sp|P46942|DB10_NICSY RNA HELICASE-LIKE PROTEIN DB10 >gi|1084413|pir||S42639
helicase-like protein - Wood tobacco
>gi|563986|dbj|BAA03763| (D16247) RNA helicase like
protein DB10 [Nicotiana sylvestris]
Length = 607
Score = 177 bits (444), Expect = 2e-43
Identities = 115/364 (31%), Positives = 187/364 (50%), Gaps = 10/364 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F F I + + F PT +Q + PI L GRD+V +KTGSGKT +L+P F
Sbjct: 147 FEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIH 206
Query: 63 IDTDLDEVQA----VITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE 118
+ Q ++ +P+RELATQI A +F K + ++ + GG K Q+++L
Sbjct: 207 LQQRRKNPQLGPTILVLSPTRELATQIQAEAVKFGK-SSRISCTCLYGGAPKGPQLREL- 264
Query: 119 SSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQ 178
S +V+ TPGR++D+++ + + + V+DEAD LDMGF + +I + Q
Sbjct: 265 SRGVDIVVATPGRLNDILEMRRVSLGQVSYLVLDEADRMLDMGFEPQIRKIVKEVPVQRQ 324
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIAN--KTVISDTIENWLVSTKGSSHNQLLLQLT 236
L+++AT P+ ++ L N V I N + V + +I + + + Q+
Sbjct: 325 TLMYTATWPKGVRKIAADLLVNSVQVNIGNVDELVANKSITQHIEVVLPMEKQRRVEQIL 384
Query: 237 KATNP-YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYV 295
++ P +IF +TK D + LT N A IHGD ER +++ + +
Sbjct: 385 RSKEPGSKIIIFCSTKKMCDQLSRNLTRN-FGAAAIHGDKSQGERDYVLSQFRAGRSPVL 443
Query: 296 VATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE 355
VATD+AARG+DI+ + +IN + P + +VHR+GR+GR G G A T +S D +
Sbjct: 444 VATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGASGLAYTFFSDQDSKHALD 503
Query: 356 IEKM 359
+ K+
Sbjct: 504 LVKV 507
gb|AAF24010.1|AF083031_7 (AF083031) RNA helicase [Guillardia theta]
Length = 381
Score = 176 bits (442), Expect = 3e-43
Identities = 104/367 (28%), Positives = 197/367 (53%), Gaps = 9/367 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+KF D K+ + L ++ +E P+ +QEK+IP+ ++ +D++ SK G+GKT +FL+PI
Sbjct: 15 LKFKDLKLKNDLLLGLNDLGYEHPSLIQEKIIPLAINNKDILARSKNGTGKTLSFLIPIL 74
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
Q I ++ ++++I P+RELA QI ++ +K + + V G D ++
Sbjct: 75 QNIYSESYGIESIILVPTRELALQISSLLRKLSKYMKNINLQ--VTGVDSKIDKNNIDF- 131
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV-QM 179
++++GTPG+I+D + N + T T V+DEAD L +I + + ++ Q+
Sbjct: 132 --NILLGTPGKIYDCLCKNE-VNKTCKTLVLDEADKLLSGEVYDTTLKILNHYKNKISQI 188
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
++FSAT P +Q K Y++NP+ + N+ V+ + I + T + Q + +
Sbjct: 189 MLFSATFPYHIQNIKKMYMNNPIEVNLMNELVL-EKISQFYAYTSENKKIQCIKNILSKV 247
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
N ++ F N+ RV+ + +T G IH + R +I + + + +V++D
Sbjct: 248 NINQSVFFCNSVNRVELLAKKITDFGYPCYFIHAKMRLDIRNKIFHDFRIGKSKLLVSSD 307
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-K 358
+ RGIDI ++ ++N ++P ++HR+GR+GR G G AI+L + + + IE +
Sbjct: 308 LITRGIDIPNINLVVNFDLPLSSESYLHRIGRTGRFGKHGIAISLITEDELETFFRIENE 367
Query: 359 MGVTFQP 365
+G+ P
Sbjct: 368 LGIEIHP 374
gb|AAC13628.1| (AF058919) similar to ATP-dependent RNA helicases [Arabidopsis
thaliana]
Length = 499
Score = 175 bits (439), Expect = 7e-43
Identities = 112/359 (31%), Positives = 186/359 (51%), Gaps = 13/359 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + FE+P+ +QE+ IPI L+GRD++ +K G+GKT F +P+ +
Sbjct: 132 EFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLE 191
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
KID D + +Q + +Q+ K + K+ +V GGT I +L Q
Sbjct: 192 KIDQDNNVIQGNCVL---DHTSQVCKELGKHLKI----QVMVTTGGTSLKDDIMRLY--Q 242
Query: 122 P-HVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQML 180
P H+++GTPGRI DL K ++ + V+DEAD L F V+ + S + Q+L
Sbjct: 243 PVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQIL 302
Query: 181 VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKAT 239
+FSAT P ++ F ++L NP + + ++ + + + V + H L L
Sbjct: 303 MFSATFPVTVKDFKDRFLTNPYVINLMDELTLKGITQFYAFVEERQKIH--CLNTLFSKL 360
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
++IF N+ RV+ + +T G IH + R R+ + +N + +V TD
Sbjct: 361 QINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTD 420
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
+ RGIDI+ V+ +IN + PK+ ++HRVGRSGR G G A+ L + D ++ IE+
Sbjct: 421 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ 479
sp|P23128|ME31_DROME PUTATIVE ATP-DEPENDENT RNA HELICASE >gi|157594 (M59926) RNA
helicase [Drosophila melanogaster]
Length = 459
Score = 175 bits (438), Expect = 9e-43
Identities = 111/366 (30%), Positives = 186/366 (50%), Gaps = 6/366 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F +F K + + +E+P+ +QE IPI LSG+D++ +K G+GKT + +P+ +
Sbjct: 59 EFEEFCLKRELLMGIFEKGWERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLE 118
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
+ID D +QA++ P+RELA Q + E K D +RV GGT I ++ +
Sbjct: 119 QIDPTKDYIQALVMVPTRELALQTSQICIELAKHLD-IRVMVTTGGTILKDDILRI-YQK 176
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
++I TPGRI DL+ + V+DEAD L + F +D + K Q+L+
Sbjct: 177 VQLIIATPGRILDLMDKKVADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILL 236
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKATN 240
FSAT P ++ F++K+L P + + + + + V + H L L
Sbjct: 237 FSATFPLTVKNFMEKHLREPYEINLMEELTLKGVTQYYAFVQERQKVH--CLNTLFSKLQ 294
Query: 241 PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDI 300
++IF N+ RV+ + +T G IH + R R+ + + + +V +D+
Sbjct: 295 INQSIIFCNSTQRVELLAKKITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDL 354
Query: 301 AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-M 359
RGID++ V+ +IN + P+ ++HR+GRSGR G G AI L + D + IEK +
Sbjct: 355 FTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKEL 414
Query: 360 GVTFQP 365
G +P
Sbjct: 415 GTEIKP 420
gb|AAD43959.2|AF159131_1 (AF159131) nucleolar RNA helicase II/Gu [Mus musculus]
Length = 763
Score = 174 bits (436), Expect = 2e-42
Identities = 114/372 (30%), Positives = 196/372 (52%), Gaps = 23/372 (6%)
Query: 27 VQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDE------VQAVITAPSRE 80
+Q K V SG+DL+ +++TG+GKT +F +P+ +K+ L E Q ++ AP+RE
Sbjct: 196 IQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKRGRAPQVLVLAPTRE 255
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA Q+ K +F+ + KL V+ F GGT QI+++ S +++GTPGRI D +++
Sbjct: 256 LANQVSK---DFSDITKKLSVACFYGGTPYGGQIERMRSGID-ILVGTPGRIKDHLQNGK 311
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR-----VQMLVFSATIPQKLQPFLK 195
L + V+DE D LDMGF V++I K+ Q L+FSAT P + K
Sbjct: 312 LDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAK 371
Query: 196 KYLHNPVMQK--IANKTV-ISDTIENWLVSTKGSSHNQLLLQLTKATNPYMA--MIFANT 250
KY+ + Q I KT + T+E+ + + ++ + + + + +IF T
Sbjct: 372 KYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCET 431
Query: 251 KGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGV 310
K ++ T +HGD+P ++R+ + +N ++ +VAT++AARG+DI V
Sbjct: 432 KKDAQELSQN-TCIKQDAQSLHGDIPQKQREITLKGFRNGNFGVLVATNVAARGLDIPEV 490
Query: 311 SHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMGVTFQPKAIK 369
++ PKD+ ++HR GR+GR G G I Y ++ + ++E K G+ F+ +
Sbjct: 491 DLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVP 550
Query: 370 DG-EIVDSYDRD 380
EI+ + +D
Sbjct: 551 SATEIIKASSKD 562
ref|NP_004809.1|| prp28, U5 snRNP 100 kd protein >gi|2655202 (AF026402) U5 snRNP 100
kD protein [Homo sapiens]
Length = 820
Score = 174 bits (436), Expect = 2e-42
Identities = 122/424 (28%), Positives = 206/424 (47%), Gaps = 40/424 (9%)
Query: 5 DFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKID 64
D + +I + ++ +++PT +Q + IPI L RD++G ++TGSGKT FL+P+ I
Sbjct: 395 DSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWIT 454
Query: 65 T--DLDEVQ-------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
T +D ++ A+I AP+RELA QI + +F K +R +GG + Q
Sbjct: 455 TLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFGKPLG-IRTVAVIGGISREDQGF 513
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIA----- 170
+L +VI TPGR+ D++++ L++ V+DEAD +DMGF DV +I
Sbjct: 514 RLRMGC-EIVIATPGRLIDVLENRYLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPV 572
Query: 171 ---------------------SSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANK 209
S K Q ++F+AT+P ++ + YL P + I +
Sbjct: 573 SNQKPDTDEAEDPEKMLANFESGKHKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSA 632
Query: 210 TVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVA 269
+ +E + S + LL + + +IF N K D + L G
Sbjct: 633 GKPHERVEQKVFLMSESEKRKKLLAILEQGFDPPIIIFVNQKKGCDVLAKSLEKMGYNAC 692
Query: 270 KIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRV 329
+HG +R+ ++++K +VATD+A RGIDI+ VS ++N ++ K++ ++HR+
Sbjct: 693 TLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDYIHRI 752
Query: 330 GRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKR--TK 387
GR+GR G G AIT + D + E+ K + P + E+ + D + TK
Sbjct: 753 GRTGRAGKSGVAITFLTKEDSAVFYEL-KQAILESPVSSCPPELANHPDAQHKPGTILTK 811
Query: 388 KQDE 391
K+ E
Sbjct: 812 KRRE 815
sp|P44922|RHLB_HAEIN ATP-DEPENDENT RNA HELICASE RHLB HOMOLOG >gi|1073893|pir||E64100
ATP-dependent RNA helicase (rhlB) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573911 (U32771)
ATP-dependent RNA helicase (rhlB) [Haemophilus
influenzae Rd]
Length = 418
Score = 174 bits (436), Expect = 2e-42
Identities = 111/351 (31%), Positives = 183/351 (51%), Gaps = 12/351 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F+ + L F+ T +Q +PI L+GRD+ G+++TG+GKT FL F
Sbjct: 13 RFSALPLHPIVRGALAKKGFDFCTPIQALSLPISLNGRDVAGQAQTGTGKTMAFLTATFH 72
Query: 62 KIDTDLD------EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIK 115
+ T D +A+I AP+RELA QI A+ K + L+ + GG +Q++
Sbjct: 73 HLLTHQDPNLKYPHPRALILAPTRELAVQISNDAEFLAKASG-LKTALAYGGDGYDKQLQ 131
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
+E ++IGT GR+ D +K + + V+DEAD D+GF+ D+ +
Sbjct: 132 AIERGVD-ILIGTTGRVIDYVKQGVIGLDEIQVVVLDEADRMFDLGFIRDIRYLLRKCPA 190
Query: 176 ---RVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLL 232
R+ ML FSAT+ K++ + ++ P +I + I+ L LL
Sbjct: 191 PQARLTML-FSATLSYKVRELAFEDMNEPEYIEIEPEQKTGHRIKEELFYPSNQDKMALL 249
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
L L + P ++FANTK R ++I +L ++G +V + GDV ++R ++ + D
Sbjct: 250 LTLMEDEWPERCIVFANTKHRCEEIWGYLAADGHRVGLLTGDVAQKKRLSLLKQFTDGDL 309
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAIT 343
+VATD+AARG+ I V+H+ N ++P D +VHR+GR+GR G G +I+
Sbjct: 310 DILVATDVAARGLHISDVTHVFNYDLPDDREDYVHRIGRTGRAGESGVSIS 360
pir||A39157 probable helicase (EC 3.6.1.-) - fruit fly (Drosophila
melanogaster) (fragment)
Length = 369
Score = 173 bits (435), Expect = 2e-42
Identities = 108/347 (31%), Positives = 179/347 (51%), Gaps = 6/347 (1%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
+E+P+ +QE IPI LSG+D++ +K G+GKT + +P+ ++ID D +QA++ P+RE
Sbjct: 16 WERPSPIQEAAIPIALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRE 75
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA Q + E K D +RV GGT I ++ + ++I TPGRI DL+
Sbjct: 76 LALQTSQICIELAKHLD-IRVMVTTGGTILKDDILRI-YQKVQLIIATPGRILDLMDKKV 133
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHN 200
+ V+DEAD L + F +D + K Q+L+FSAT P ++ F++K+L
Sbjct: 134 ADMSHCRILVLDEADKLLSLDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLRE 193
Query: 201 PVMQKIANKTVISDTIENW-LVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHH 259
P + + + + + V + H L L ++IF N+ RV+ +
Sbjct: 194 PYEINLMEELTLKGVTQYYAFVQERQKVH--CLNTLFSKLQINQSIIFCNSTQRVELLAK 251
Query: 260 FLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIP 319
+T G IH + R R+ + + + +V +D+ RGID++ V+ +IN + P
Sbjct: 252 KITELGYCCYYIHAKMAQAHRNRVFHDFRQGLCRNLVCSDLFTRGIDVQAVNVVINFDFP 311
Query: 320 KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGVTFQP 365
+ ++HR+GRSGR G G AI L + D + IEK +G +P
Sbjct: 312 RMAETYLHRIGRSGRFGHLGIAINLITYEDRFDLHRIEKELGTEIKP 358
emb|CAB39031.1| (AL034559) predicted using hexExon; MAL3P7.12 (PFC0915w),
ATP-dependent RNA Helicase, len: 434 aa; Similarity to
ATP-dependent RNA helicase. A.thaliana ATP-dependent RNA
helicase (TR:O80838) BLAST Score: 1552, sum P(1) =
1.5e...
Length = 433
Score = 173 bits (434), Expect = 3e-42
Identities = 111/365 (30%), Positives = 189/365 (51%), Gaps = 4/365 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F D+ K + + +EKP+ +QE+ IP+ L+G++++ +K G+GKT F +P+ +
Sbjct: 61 EFEDYFLKRELLMGIFEKGYEKPSPIQEESIPVALAGKNILARAKNGTGKTAAFAIPLLE 120
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
K +T + +Q +I P+RELA Q +E K + K++ GGT I +L +
Sbjct: 121 KCNTHKNFIQGLILVPTRELALQTSAMIKELGK-HMKVQCMVTTGGTSLREDIMRLYNVV 179
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
H++ GTPGRI DL + + + V+DEAD L F V+++ K Q+L+
Sbjct: 180 -HILCGTPGRILDLANKDVANLSGCHIMVMDEADKLLSPEFQPIVEELMKFLPKEKQILM 238
Query: 182 FSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNP 241
+SAT P ++ F YL + + ++ + I + K L L
Sbjct: 239 YSATFPVTVKEFRAIYLSDAHEINLMDELTLKG-ITQYYAFVKERQKVHCLNTLFAKLQI 297
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
A+IF N+ RV+ + +T G IH + R R+ + +N + +V++D+
Sbjct: 298 NQAIIFCNSITRVELLAKKITELGYSSFYIHARMSQTHRNRVFHDFRNGACRCLVSSDLF 357
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMG 360
RGIDI+ V+ +IN + PK+ ++HR+GRSGR G G AI L + D ++ +IE ++G
Sbjct: 358 TRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINLITFEDRFNLYKIEVELG 417
Query: 361 VTFQP 365
QP
Sbjct: 418 TEIQP 422
sp|P44701|SRMB_HAEIN ATP-DEPENDENT RNA HELICASE SRMB HOMOLOG >gi|1073894|pir||H64066
ATP-dependent RNA helicase (srmB) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573394 (U32725)
ATP-dependent RNA helicase (srmB) [Haemophilus
influenzae Rd]
Length = 439
Score = 173 bits (434), Expect = 3e-42
Identities = 112/414 (27%), Positives = 201/414 (48%), Gaps = 25/414 (6%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F F+ + + LE + +PT +Q + IP + D++G + TG+GKT FLLP Q
Sbjct: 5 QFEQFDLSPELLKALEKKGYSRPTAIQMEAIPAAMEESDVLGSAPTGTGKTAAFLLPALQ 64
Query: 62 KIDTDLD-------EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
+ LD + ++ P+RELA Q+ + A+E + L ++ GG
Sbjct: 65 HL---LDYPRRKPGPPRILVLTPTRELAMQVAEQAEELAQFTH-LNIATITGGVAYQNHG 120
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174
++Q +V+ TPGR+ IK + + DEAD L MGF D ++IA+
Sbjct: 121 DVFNTNQD-LVVATPGRLLQYIKEENFDCRSVEMLIFDEADRMLQMGFGQDAEKIAAETR 179
Query: 175 KRVQMLVFSATIP-QKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLL 232
R Q L+FSAT+ + L F ++ L++PV I W + H +LL
Sbjct: 180 WRKQTLLFSATLEGELLVDFAERLLNDPVKVDAEPSRRERKKINQWYYHADSNEHKIKLL 239
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
+ + ++F + ++ L G++ A + G++ +R ++ +K+
Sbjct: 240 ARFIETEEVTRGIVFIRRREDARELSETLRKRGIRSAYLEGEMAQTQRNNAIDKLKSGIV 299
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
+VATD+AARGIDI+ VSH++N ++P ++HR+GR+ R G +GTA++ D
Sbjct: 300 TVLVATDVAARGIDIDDVSHVMNFDLPYSADTYLHRIGRTARAGKKGTAVSFVEAHDYKL 359
Query: 353 IREIEK-----------MGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEISTK 395
+ +I++ G+ + K KDGE+ + + + K++++ T+
Sbjct: 360 LGKIKRYTEEILKARILAGLEPRTKPPKDGEVKSVSKKQKARIKEKREEKKKTE 413
gb|AAF04377.1|AF188678_1 (AF188678) P72 DEAD box protein [Pisum sativum]
Length = 716
Score = 173 bits (433), Expect = 3e-42
Identities = 112/366 (30%), Positives = 184/366 (49%), Gaps = 10/366 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F F I++ ++N F PT +Q + PI L +D+V +KTGSGKT +LLP F
Sbjct: 152 MSFASSGFPSEIHKEVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAF 211
Query: 61 ----QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
I T ++ ELATQI A +F+K + ++ + GG K Q++
Sbjct: 212 ITSSALIITPKWGPTILVLHQQGELATQIQDEAVKFSKTS-RIACTCLYGGAPKGPQLRD 270
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
++ +V+ TPGR++D+++ + +H + V+DEAD LDMGF + +I + R
Sbjct: 271 IDRGAD-IVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPAR 329
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIAN--KTVISDTIENWL-VSTKGSSHNQLLL 233
Q L+F+AT P++++ L NPV I N + V + +I + V +L
Sbjct: 330 RQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLES 389
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
L +IF +TK D + LT A I GD +R ++N ++
Sbjct: 390 ILQSQDQGSKIIIFCSTKKMCDQLARNLTRQ-FGAAAIRGDKSQADRDHVLNQFRSGRTP 448
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
+VATD+AARG+D++ + ++N P + ++HR+GR+GR G G A T + D
Sbjct: 449 VLVATDVAARGLDVKDIRVVVNYTFPTGVEDYLHRIGRTGRAGATGIAYTFFGDQDAKHA 508
Query: 354 REIEKM 359
++ K+
Sbjct: 509 SDLIKI 514
gb|AAD34681.1|AC006341_9 (AC006341) Similar to gb|L13612 DEAD-box protein (dbp45A) from
Drosophila melanogaster and is a member of PF|00270
DEAD/DEAH box helicase family. [Arabidopsis thaliana]
Length = 491
Score = 171 bits (430), Expect = 8e-42
Identities = 128/400 (32%), Positives = 204/400 (51%), Gaps = 16/400 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F ++ +T + + KPT VQ +P +L+GRD++G ++TGSGKT F LPI +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 63 IDTDLDEVQAVITAPSRELATQIYKAAQEFTKVND--KLRVSNFVGGTDKARQIKKLESS 120
+ D V A++ P+RELA Q+ A++F + LR S VGG D Q L S
Sbjct: 120 LAEDPYGVFALVVTPTRELAFQL---AEQFKALGSCLNLRCSVIVGGMDMLTQTMSL-VS 175
Query: 121 QPHVVIGTPGRIHDLIKSNALI--VHTANTF-VVDEADMTLDMGFLADVDQIASSFGKRV 177
+PH+VI TPGRI L+++N + V + F V+DEAD LD+GF ++ I K
Sbjct: 176 RPHIVITTPGRIKVLLENNPDVPPVFSRTKFLVLDEADRVLDVGFQDELRTIFQCLPKSR 235
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTI-ENWLVSTKGSSHNQLLLQLT 236
Q L+FSAT+ LQ L+ + + DT+ + ++ K + L+ L+
Sbjct: 236 QTLLFSATMTSNLQALLEHSSNKAYFYEAYEGLKTVDTLTQQFIFEDKDAKELYLVHILS 295
Query: 237 KATNPYM--AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
+ + + AMIF +T + L ++ +H R ++ K+
Sbjct: 296 QMEDKGIRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPI 355
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354
++ATD+A+RG+DI V +IN +IP+D +VHRVGR+ R G G A+++ + +D I
Sbjct: 356 LLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIH 415
Query: 355 EI-EKMGVTFQP---KAIKDGEIVDSYDRDRREKRTKKQD 390
+I E++G +P K I D V + +R K D
Sbjct: 416 KIEEEVGKKMEPYNKKVITDSLEVTKVSKAKRVAMMKMLD 455
gb|AAD38874.1|AF110007_1 (AF110007) p68 RNA helicase [Molgula oculata]
>gi|5059032|gb|AAD38877.1|AF110009_1 (AF110009) p68 RNA
helicase [Molgula oculata]
Length = 618
Score = 171 bits (428), Expect = 1e-41
Identities = 119/398 (29%), Positives = 196/398 (48%), Gaps = 19/398 (4%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF + F DYI TL F PT +Q P +SG D VG +KTGSGKT F+LP
Sbjct: 148 KFEEAGFPDYIYGTLSKQGFSDPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLAFILPAIV 207
Query: 62 KIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
I+ D ++ P+RELA Q+ + A EF + ++ + GG K Q++
Sbjct: 208 HINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGS-SSHIKNTCVYGGASKGPQLRD 266
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
LE +VI TPGR+ D ++ + V+DEAD LDMGF + +I S
Sbjct: 267 LERGC-EIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPD 325
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQL 235
Q L++SAT P+++ +L + V ++ + + ++ +V + ++ L++L
Sbjct: 326 RQTLMWSATWPKEVSKLAADFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRL 385
Query: 236 TK---ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
+ + +IF TK R D++ + +G IHGD ER ++N ++
Sbjct: 386 MEEIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRS 445
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
+VATD+A+RG+D+ V +IN + P +VHR+GR+ R +GTA T ++ +
Sbjct: 446 PILVATDVASRGLDVSDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQ 505
Query: 353 IRE----IEKMGVTFQPKAIKDGEIVDSY----DRDRR 382
++ +++ PK ++ G +Y RDRR
Sbjct: 506 AKDLIAILQEAKQAVNPKLMELGMTFRNYGKSGGRDRR 543
dbj|BAA13931| (D89270) similar to Saccharomyces cerevisiae eukaryotic initiation
factor 4A (EIF-4), SWISS-PROT Accession Number P10081
[Schizosaccharomyces pombe]
Length = 339
Score = 170 bits (427), Expect = 2e-41
Identities = 103/339 (30%), Positives = 183/339 (53%), Gaps = 8/339 (2%)
Query: 46 KTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFV 105
K+G GKT F+L Q+I+ EV ++ +RELA QI F+K +R + F
Sbjct: 1 KSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 60
Query: 106 GGTDKARQIK--KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLD-MGF 162
GG + + ++ K +S PH+V+ TPGR++ L++ L V++ FV+DE D L+ +
Sbjct: 61 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKNLKVNSVKHFVLDECDKLLESVDM 120
Query: 163 LADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVIS-DTIENWLV 221
D+ ++ + + Q+++FSAT+ +++P KK++ NP+ + ++T ++ ++ V
Sbjct: 121 RRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYV 180
Query: 222 STKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERK 281
+ + N+ + L + +IF + R +++ L IHG +P ER
Sbjct: 181 KLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERI 240
Query: 282 RIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTA 341
+ + K+ D + VATD+ RGIDIE V+ +IN ++P ++HRVGR+GR G +G A
Sbjct: 241 KRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLA 300
Query: 342 ITLYSPSDDS----SIREIEKMGVTFQPKAIKDGEIVDS 376
IT S +DS I+E ++ +T P I G +++
Sbjct: 301 ITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYMNA 339
ref|NP_013093.1|DRS1| putative ATP dependent RNA helicase; Drs1p
>gi|1706521|sp|P32892|DRS1_YEAST PUTATIVE ATP-DEPENDENT
RNA HELICASE DRS1 >gi|2132405|pir||S64750 probable
ATP-dependent RNA helicase DRS1 - yeast (Saccharomyces
cerevisiae) >gi|1360171|emb|CAA97452| (Z73113) ORF
YLL008w [Saccharomyces cerevisiae]
>gi|1495215|emb|CAA62783| (X91488) L1345/DRS1 protein
[Saccharomyces cerevisiae]
Length = 752
Score = 170 bits (426), Expect = 2e-41
Identities = 110/404 (27%), Positives = 200/404 (49%), Gaps = 18/404 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + + + L ++ + KP+ +Q IPI L G+D++ + TGSGKT F++PI ++
Sbjct: 233 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 292
Query: 63 I---DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ + + ++ P+RELA Q+ ++ + + VGG + RQ +++
Sbjct: 293 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLN-LRQQEQMLK 351
Query: 120 SQPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQ 178
S+P +VI TPGR D I+++A V + V+DEAD L+ GF ++++I Q
Sbjct: 352 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 411
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ--LLLQLT 236
L+FSAT+ K++ + L PV I + + V + H + LL L
Sbjct: 412 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 471
Query: 237 KATNPY---MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ +P ++F K + + G+ V ++HG + +R +N KNL+
Sbjct: 472 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 531
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD--- 350
++ TD+A+RG+DI + +IN ++PK ++HRVGR+ R G +G ++T S
Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 591
Query: 351 ---SSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDE 391
++I+ +E+ Q KA+ G VD + K + ++
Sbjct: 592 IVRAAIKSVEENKSLTQGKAL--GRNVDWVQIEETNKLVESMND 633
gi|171656 (L00683) ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 170 bits (426), Expect = 2e-41
Identities = 110/404 (27%), Positives = 200/404 (49%), Gaps = 18/404 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F + + + L ++ + KP+ +Q IPI L G+D++ + TGSGKT F++PI ++
Sbjct: 203 FNSLSLSRPVLKGLASLGYVKPSPIQSATIPIALLGKDIIAGAVTGSGKTAAFMIPIIER 262
Query: 63 I---DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ + + ++ P+RELA Q+ ++ + + VGG + RQ +++
Sbjct: 263 LLYKPAKIASTRVIVLLPTRELAIQVADVGKQIARFVSGITFGLAVGGLN-LRQQEQMLK 321
Query: 120 SQPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQ 178
S+P +VI TPGR D I+++A V + V+DEAD L+ GF ++++I Q
Sbjct: 322 SRPDIVIATPGRFIDHIRNSASFNVDSVEILVMDEADRMLEEGFQDELNEIMGLLPSNRQ 381
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ--LLLQLT 236
L+FSAT+ K++ + L PV I + + V + H + LL L
Sbjct: 382 NLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQEFVRIRKRDHLKPALLFNLI 441
Query: 237 KATNPY---MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ +P ++F K + + G+ V ++HG + +R +N KNL+
Sbjct: 442 RKLDPTGQKRIVVFVARKETAHRLRIIMGLLGMSVGELHGSLTQEQRLDSVNKFKNLEVP 501
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD--- 350
++ TD+A+RG+DI + +IN ++PK ++HRVGR+ R G +G ++T S
Sbjct: 502 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGREGRSVTFVGESSQDRS 561
Query: 351 ---SSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDE 391
++I+ +E+ Q KA+ G VD + K + ++
Sbjct: 562 IVRAAIKSVEENKSLTQGKAL--GRNVDWVQIEETNKLVESMND 603
gb|AAD38876.1|AF110008_1 (AF110008) p68 RNA helicase [Molgula occulta]
Length = 619
Score = 169 bits (425), Expect = 3e-41
Identities = 118/398 (29%), Positives = 197/398 (48%), Gaps = 19/398 (4%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F + F DYI TL F +PT +Q P +SG D VG +KTGSGKT F+LP
Sbjct: 150 QFQEAGFPDYIYGTLNXQGFSEPTPIQAIGWPNAMSGHDCVGIAKTGSGKTLGFILPAIV 209
Query: 62 KIDTDL-----DEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
I+ D ++ P+RELA Q+ + A EF + ++ + GG K Q++
Sbjct: 210 HINAQPYLDPGDGPIVLVLCPTRELAQQVQQVAAEFGS-SSHIKNTCVYGGASKGPQLRD 268
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
LE +VI TPGR+ D ++ + V+DEAD LDMGF + +I S
Sbjct: 269 LERGC-EIVIATPGRLIDFLEQKKTNLRRCTYLVLDEADRMLDMGFEPQIRKIISQIRPD 327
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST-KGSSHNQLLLQL 235
Q L++SAT P+++ +L + V ++ + + ++ +V + ++ L++L
Sbjct: 328 RQTLMWSATWPKEVSKLASDFLGDFVHVQVGSTGLSANHNILQIVDVCQPMEKDEKLMRL 387
Query: 236 TK---ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
+ + +IF TK R D++ + +G IHGD ER ++N ++
Sbjct: 388 MEEIMGESENKTIIFTETKRRCDELTRTMRRDGWPAMCIHGDKSQPERDWVLNEFRSGRS 447
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
+VATD+A+RG+D+ V +IN + P +VHR+GR+ R +GTA T ++ +
Sbjct: 448 PILVATDVASRGLDVHDVKFVINYDFPSQCEDYVHRIGRTARAEQKGTAYTFFTYDNAKQ 507
Query: 353 IRE----IEKMGVTFQPKAIKDGEIVDSY----DRDRR 382
++ +++ PK ++ G +Y RDRR
Sbjct: 508 AKDLVGILQEAKQAVNPKLLEMGMSFRNYGKSGGRDRR 545
sp|Q09747|YB66_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C12C2.06
>gi|984214|emb|CAA90819.1| (Z54140) probable
ATP-dependent RNA helicase [Schizosaccharomyces pombe]
Length = 503
Score = 169 bits (424), Expect = 4e-41
Identities = 108/372 (29%), Positives = 197/372 (52%), Gaps = 18/372 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSG--RDLVGESKTGSGKTHTFLLPIF 60
F + K + + + ++KF+KP+++QEK +P++LS R+++G+S++G+GKT F L +
Sbjct: 116 FEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML 175
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
++D + + QA+ APSRELA QI E K + V G D + K+++
Sbjct: 176 SRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTE---VKTAFGIKDSVPKGAKIDA- 231
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVD-QIASSFGKRVQM 179
+VIGTPG + DL+K L FV+DEAD LD L D +I + Q+
Sbjct: 232 --QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 289
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTKA 238
++FSAT ++++ + +++ N ++ + + + I+ + + H +L++L
Sbjct: 290 VLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGL 349
Query: 239 TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
++IF K ++I +T++G VA + G++ +R IM+S + + +V T
Sbjct: 350 LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTT 409
Query: 299 DIAARGIDIEGVSHIINDEIPKDLT------FFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
++ ARGID+ V+ ++N ++P D ++HR+GR+GR G G +I D S
Sbjct: 410 NVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV--HDKKS 467
Query: 353 IREIEKMGVTFQ 364
E+ + FQ
Sbjct: 468 WEEMNAIQEYFQ 479
emb|CAA16457| (AL021529) DEAD-box RNA helicase [Streptomyces coelicolor]
Length = 498
Score = 168 bits (421), Expect = 9e-41
Identities = 103/353 (29%), Positives = 181/353 (51%), Gaps = 8/353 (2%)
Query: 24 PTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ---AVITAPSRE 80
P +Q +P L+GRD++G +TGSGKT F L + + E + ++ P+RE
Sbjct: 92 PFPIQAATLPNSLAGRDIMGRGRTGSGKTLAFGLALLARTAGRRAEPRQPLGLVLVPTRE 151
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
LA Q+ A + + + KLR++ VGG RQ L VV+ TPGR+ DLI
Sbjct: 152 LAQQVTDALTPYAR-SVKLRLATVVGGMSIGRQASALRGGA-EVVVATPGRLKDLIDRGD 209
Query: 141 LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHN 200
++ + V+DEAD DMGF+ V + Q ++FSAT+ + + +++YL +
Sbjct: 210 CRLNQVSVTVLDEADQMADMGFMPQVTALLDQVRPEGQRMLFSATLDRNVDLLVRRYLSD 269
Query: 201 PVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHF 260
PV+ + T+E+ ++ G+ + ++ A ++F +TK VD +
Sbjct: 270 PVVHSVDPSAGAVTTMEHHVLHVHGADKHAATTEI--AARDGRVIMFLDTKHAVDRLTRD 327
Query: 261 LTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPK 320
L ++G++ A +HG +R R + K +VAT++AARGI ++ + ++N + P
Sbjct: 328 LLNSGVRAAALHGGKSQPQRTRTLAQFKTGHVTVLVATNVAARGIHVDNLDLVVNVDPPT 387
Query: 321 DLTFFVHRVGRSGRNGLQGTAITLYSPSD-DSSIREIEKMGVTFQPKAIKDGE 372
D ++HR GR+ R G G+ +TL +P+ +R + + G+ Q + G+
Sbjct: 388 DHKDYLHRGGRTARAGESGSVVTLVTPNQRRGMVRLMSEAGIRPQTTQVSPGD 440
emb|CAB56376.1| (AL118514) ATP-dependent RNA helicase [Streptomyces coelicolor
A3(2)]
Length = 740
Score = 167 bits (418), Expect = 2e-40
Identities = 112/377 (29%), Positives = 182/377 (47%), Gaps = 8/377 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F D + + + L P +Q IP L+G+D++G +TGSGKT +F LP
Sbjct: 63 FADLGLPEGVVRKLAQNGVTTPFPIQAATIPDALAGKDILGRGRTGSGKTLSFGLPTLAT 122
Query: 63 ID---TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLES 119
+ T+ + +AVI P+RELA Q+ A Q + V L++ GGT QI LE
Sbjct: 123 LAGGRTEKHKPRAVILTPTRELAMQVADALQPYGDVLG-LKMKVVCGGTSMGNQIYALER 181
Query: 120 SQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQM 179
V++ TPGR+ D+I A + V+DEAD D+GFL +V ++ Q
Sbjct: 182 GVD-VLVATPGRLRDIINRGACSLENVQIAVLDEADQMSDLGFLPEVTELLDQVPAGGQR 240
Query: 180 LVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKAT 239
++FSAT+ +++ + +YL +P + ++ T+ + ++ K + + A+
Sbjct: 241 MLFSATMENEIKTLVDRYLKDPALHEVDAAQGAVTTMSHHILVVKPKDKAPVTAAI--AS 298
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATD 299
+IF T+ D + L G K +HG + R R + K+ +VATD
Sbjct: 299 RKGRTIIFVRTQLGADRVAEQLRDAGAKADALHGGMTQGARTRTLADFKDGYVNVLVATD 358
Query: 300 IAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI-REIEK 358
+AARGI ++G+ ++N + D ++HR GR+ R G GT ++L P I R +E
Sbjct: 359 VAARGIHVDGIDLVLNVDPAGDHKDYLHRAGRTARAGRTGTVVSLSLPHQRRQIFRLMED 418
Query: 359 MGVTFQPKAIKDGEIVD 375
GV I+ G D
Sbjct: 419 AGVDATRHIIQGGAAFD 435
gb|AAD55444.1|AF181659_1 (AF181659) BcDNA.GM05306 [Drosophila melanogaster]
Length = 641
Score = 167 bits (418), Expect = 2e-40
Identities = 108/398 (27%), Positives = 193/398 (48%), Gaps = 14/398 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
F N + + + + + PT +Q IP+ L GRD+ G + TG+GKT ++LP ++
Sbjct: 159 FYQMNLSRPLMRAIGVLGYIYPTPIQASTIPVALLGRDICGCAATGTGKTAAYMLPTLER 218
Query: 63 ID----TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE 118
+ + + ++ P+REL Q+Y+ ++ + + V +GG D Q L
Sbjct: 219 LLYRPLNNKAITRVLVLVPTRELGAQVYQVTKQLCQFTT-IDVGLAIGGLDVKAQEAVLR 277
Query: 119 SSQPHVVIGTPGRIHDLIKSN-ALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
+ P +VI TPGR+ D IK+ + + + ++DEAD LD F + +I +S K
Sbjct: 278 QN-PDIVIATPGRLIDHIKNTPSFTLDSIEVLILDEADRMLDEYFAEQMKEIINSCCKTR 336
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLV---STKGSSHNQLLLQ 234
Q ++FSAT+ ++++ L P+ + N ++ + + K +L
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKVFVNNNQQVAFNLRQEFIRIREDKEGDREPILAS 396
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L T M+F TK + +H L G++ ++HG++ ++R + K
Sbjct: 397 LICRTFHDHCMVFVQTKKQAHRLHILLGLLGVRAGELHGNLTQQQRLESLKKFKEEQIDV 456
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354
++ATD+AARG+DI GV +IN +P ++HRVGR+ R G G +++L + ++
Sbjct: 457 LIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGISVSLAGEKERKIVK 516
Query: 355 EIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEI 392
+I K + I EI++ Y R K T + EI
Sbjct: 517 DIIKNAESTIKNRIIPPEIIEKY----RNKLTSLEPEI 550
emb|CAB04518.1| (Z81555) similar to ATP-dependent helicase (DEAD box); cDNA EST
yk436c8.5 comes from this gene; cDNA EST EMBL:D35872
comes from this gene; cDNA EST EMBL:D67566 comes from
this gene; cDNA EST EMBL:D73766 comes from this gene;
...
Length = 561
Score = 167 bits (418), Expect = 2e-40
Identities = 108/367 (29%), Positives = 182/367 (49%), Gaps = 22/367 (5%)
Query: 20 KFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQA-----VI 74
KF+KPT +Q PI +SGRD++ +KTGSGKT F+LP I + ++
Sbjct: 148 KFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQRGEGPAVLV 207
Query: 75 TAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHD 134
P+RELA Q+ + + +F + L+++ GG K Q + LE +V+ TPGR+ D
Sbjct: 208 LLPTRELAQQVQEVSIDFCH-SLGLKMTCLFGGASKGPQARDLERGVD-IVVATPGRLLD 265
Query: 135 LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFL 194
+ + + + V+DEAD LDMGF + +I Q L+FSAT P++++
Sbjct: 266 FLDNGTTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTLMFSATWPKEVRALA 325
Query: 195 KKYLHNPVMQKIA--------NKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMI 246
+ + + N T + D +E K LL +I
Sbjct: 326 SDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLME----LLNHIMNQKECKTII 381
Query: 247 FANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGID 306
F TK + D++ + +G IHGD ER ++ K ++ATD+AARG+D
Sbjct: 382 FVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIMLATDVAARGLD 441
Query: 307 IEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM---GVTF 363
++ + +IN + P + +VHR+GR+GR+ +GTA T ++ ++ S +++ K+
Sbjct: 442 VDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQT 501
Query: 364 QPKAIKD 370
P+A++D
Sbjct: 502 VPQALRD 508
ref|NP_011344.1|ROK1| RNA helicase involved in rRNA processing; Rok1p
>gi|1173121|sp|P45818|ROK1_YEAST ATP-DEPENDENT RNA
HELICASE ROK1 >gi|2131186|pir||S59649 ATP-dependent RNA
helicase ROK1 - yeast (Saccharomyces cerevisiae)
>gi|607182|emb|CAA84384| (Z34901) ATP-dependent RNA
helicase [Saccharomyces cerevisiae]
>gi|971382|emb|CAA59758| (X85757) putative ATP dependent
RNA helicase [Saccharomyces cerevisiae]
>gi|1322774|emb|CAA96883| (Z72693) ORF YGL171w
[Saccharomyces cerevisiae]
Length = 564
Score = 166 bits (416), Expect = 3e-40
Identities = 115/397 (28%), Positives = 198/397 (48%), Gaps = 20/397 (5%)
Query: 6 FNF-KDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI- 63
F+F K +N +EN F +PT +Q + IP+ L+ RD++ TGSGKT FL+P+ Q+I
Sbjct: 127 FSFDKRLLNNLIEN-GFTEPTPIQCECIPVALNNRDVLACGPTGSGKTLAFLIPLVQQII 185
Query: 64 -DTDLDEVQAVITAPSRELATQIY-----KAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
D ++ +I +P++ELA QI+ + + F + L+V+ + K +
Sbjct: 186 DDKQTAGLKGLIISPTKELANQIFIECFKLSYKIFLEKKRPLQVALLSKSLGAKLKNKVV 245
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK-R 176
+ ++I TP R+ D++K+ AL + + DEAD D F+ D I S+ +
Sbjct: 246 SDKKYDIIISTPLRLIDVVKNEALDLSKVKHLIFDEADKLFDKTFVEQSDDILSACREPS 305
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLT 236
++ +FSATIP ++ + + +PV I +K + IE L+ + ++
Sbjct: 306 LRKAMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQL 365
Query: 237 KATNPYMA--MIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
+ +IF + R ++H L + + V IH + +R RI+ K +
Sbjct: 366 VQEGEFKPPIIIFLESITRAKALYHELMYDRINVDVIHAERTALQRDRIIERFKTGELWC 425
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR 354
++ TD+ ARGID +GV+ +IN ++P +VHR+GR+GR G G AIT Y+ D +I+
Sbjct: 426 LICTDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIK 485
Query: 355 EIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDE 391
I + +K S D+ K T+K+ E
Sbjct: 486 PIINV--------MKQSGCEVSEWMDKMAKMTRKEKE 514
emb|CAA22456.1| (AL034488) similar to DEAD/DEAH box helicase ; Helicases conserved
C-terminal domain; cDNA EST yk313d5.5 comes from this
gene; cDNA EST EMBL:D74983 comes from this gene; cDNA
EST EMBL:C08911 comes from this gene; cDNA EST EMB...
Length = 504
Score = 166 bits (415), Expect = 5e-40
Identities = 116/388 (29%), Positives = 194/388 (49%), Gaps = 30/388 (7%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDL------DEVQ--- 71
FEKP+ +Q ++ P++LSG+D +G S+TGSGKT FLLP ID L DE Q
Sbjct: 104 FEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPS 163
Query: 72 --AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTP 129
++ +P+RELA QI ++++ N V + GG+ + Q++ +VI TP
Sbjct: 164 PFVLVLSPTRELAQQIEGEVKKYS-YNGYKSVCLYGGGS-RPEQVEACRGGV-EIVIATP 220
Query: 130 GRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQK 189
GR+ DL + + + V+DEAD LDMGF + +I + + SAT P+
Sbjct: 221 GRLTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEG 280
Query: 190 LQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATN--------P 241
++ KY VM N ++ + ++ + H+ L++ + N
Sbjct: 281 VRKLTDKYTKEAVMA--VNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQN 338
Query: 242 YMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
Y +IF +K D + G+ +HG +R+ +N +++ + Q +VATD+A
Sbjct: 339 YKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLA 398
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGV 361
+RGID+ ++H++N + P D+ +VHRVGR+GR G +G A++ +D S+ +
Sbjct: 399 SRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGL----- 453
Query: 362 TFQPKAIKDGEIVDSYDRDRREKRTKKQ 389
Q + E+ D RD + R K Q
Sbjct: 454 -IQILEKSEQEVPDQLRRDAEKYRLKCQ 480
ref|NP_009796.1|PRP5| RNA helicase homolog; Prp5p >gi|130806|sp|P21372|PR05_YEAST
PRE-MRNA PROCESSING RNA HELICASE PRP5
>gi|101499|pir||A35791 pre-mRNA processing protein PRP5
- yeast (Saccharomyces cerevisiae) >gi|172284 (M33191)
PRP5 [Saccharomyces cerevisiae] >gi|536641|emb|CAA85200|
(Z36106) ORF YBR237w [Saccharomyces cerevisiae]
Length = 849
Score = 164 bits (411), Expect = 1e-39
Identities = 114/387 (29%), Positives = 189/387 (48%), Gaps = 39/387 (10%)
Query: 17 ENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ----- 71
E + F T +Q + +P ++SGRD++G SKTGSGKT ++LLP+ +++ +
Sbjct: 272 EKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGP 331
Query: 72 -AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPG 130
+I AP+RELA QI++ +FT+ + +R GG++ +QI L+ +V+ TPG
Sbjct: 332 MGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGT-EIVVATPG 390
Query: 131 RIHDLIKSN--ALIVHTANTFVV-DEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIP 187
R D++ N L+ TFVV DEAD D+GF + QI + Q ++FSAT P
Sbjct: 391 RFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFP 450
Query: 188 QKLQPFLKKYLHNPVMQKIANKTVISDTI-ENWLVSTKGSSHNQLLLQLTKATNPYM--- 243
KL+ F + LH+P+ I +K ++++ + + + + L+QL + +
Sbjct: 451 NKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEV 510
Query: 244 -----------------AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNS 286
A+IF +++ D I L + G+ IH P +ER +
Sbjct: 511 QSENDGQSSDVEEVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEK 570
Query: 287 IKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYS 346
K ++ T++ +RG+++ VS +I K +VH GR+ R GTAITL
Sbjct: 571 FKREKNSILLCTEVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITL-- 628
Query: 347 PSDDSSIREIEKMGVTFQPKAIKDGEI 373
+ E G KA++D EI
Sbjct: 629 ------LLHDELSGAYILSKAMRDEEI 649
sp|Q10202|YBX6_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C17D1.06
>gi|2130219|pir||S67386 hypothetical protein - fission
yeast (Schizosaccharomyces pombe)
>gi|3451298|emb|CAA20430.1| (AL031322) putative
atp-dependent rna helicase [Schizosaccharomyces pombe]
Length = 578
Score = 163 bits (409), Expect = 2e-39
Identities = 117/372 (31%), Positives = 183/372 (48%), Gaps = 23/372 (6%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
++F + + + + L+N K +PT +Q P +L+GRD+VG ++TGSGKT F +P
Sbjct: 167 LQFDELDVSAKLREGLKNYK--EPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPAL 224
Query: 61 QKIDTDLDEV---QAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
Q ++ D + ++ +P+RELA Q Y+ + L+ GG K+ Q +
Sbjct: 225 QYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNSLIQ-GTNLKAVVVYGGAPKSEQARAA 283
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF---- 173
+++ V+IGTPGR+ DLI ++ V+DEAD LD GF D+ I S
Sbjct: 284 KNAS--VIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPT 341
Query: 174 --GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLV-------STK 224
G R Q + FSAT P+ ++ +L +PV I + + + +V S +
Sbjct: 342 RNGSR-QTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKE 400
Query: 225 GSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIM 284
N L L+ +IF K + L V IHGD+ R + +
Sbjct: 401 RMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQAL 459
Query: 285 NSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITL 344
N K+ +VATD+AARG+DI V +IN P + +VHR+GR+GR +GTAIT
Sbjct: 460 NDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITF 519
Query: 345 YSPSDDSSIREI 356
++P D S E+
Sbjct: 520 FTPQDKSHAGEL 531
emb|CAB65627.1| (AL049766) dJ686N3.1 (novel ATP dependent RNA helicase (contains
Helicases conserved C-terminal domains and DEAD/DEAH
boxes)) [Homo sapiens]
Length = 569
Score = 162 bits (406), Expect = 5e-39
Identities = 104/374 (27%), Positives = 186/374 (48%), Gaps = 10/374 (2%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI---DTDLDEVQAVITAP 77
F++PT +Q+ IP+ L G+D+ + TG+GKT F LP+ +++ + ++ P
Sbjct: 11 FKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVLERLIYKPRQAPVTRVLVLVP 70
Query: 78 SRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHD-LI 136
+REL Q++ ++ + + + VGG D Q L ++ P ++I TPGR+ D L
Sbjct: 71 TRELGIQVHSVTRQLAQFCN-ITTCLAVGGLDVKSQEAALRAA-PDILIATPGRLIDHLH 128
Query: 137 KSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKK 196
+ + + ++DEAD LD F + +I Q ++FSAT+ +++
Sbjct: 129 NCPSFHLSSIEVLILDEADRMLDEYFEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASV 188
Query: 197 YLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQ---LLLQLTKATNPYMAMIFANTKGR 253
L NPV + + T ++ + + + + ++ L T M+F TK +
Sbjct: 189 SLKNPVRIFVNSNTDVAPFLRQEFIRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQ 248
Query: 254 VDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHI 313
+H L GL+V ++HG++ +R + K+ +VATD+AARG+DIEGV +
Sbjct: 249 AHRMHILLGLMGLQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTV 308
Query: 314 INDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTFQPKAIKDGEI 373
IN +P + +VHRVGR+ R G G +++L + ++EI K I ++
Sbjct: 309 INFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDERKMLKEIVKAAKAPVKARILPQDV 368
Query: 374 VDSYDRDRREKRTK 387
+ + RD+ EK K
Sbjct: 369 ILKF-RDKIEKMEK 381
gb|AAF14544.1|AF171063_1 (AF171063) DEAD box RNA helicase Gemin3 [Homo sapiens]
Length = 824
Score = 160 bits (400), Expect = 3e-38
Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 13/356 (3%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FE+P+ VQ K IP+ G DL+ ++K+G+GKT F + + Q +I AP+RE
Sbjct: 82 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 141
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
+A QI+ + L F+GGT ++ +L+ H+ +G+PGRI LI+ +
Sbjct: 142 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC--HIAVGSPGRIKQLIELDY 199
Query: 141 LIVHTANTFVVDEADMTLDMG-FLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLH 199
L + F++DEAD L+ G F ++ I SS QML SAT P+ L L KY+
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMR 259
Query: 200 NPVMQKI--ANKTVIS-----DTIENWLVSTKGSSHNQLLLQLTKATNPY-MAMIFANTK 251
+P ++ ++ ++I + ++ ++ K LQ + P+ A++F+N
Sbjct: 260 DPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLH 319
Query: 252 GRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVS 311
R + L+S G I G++ +R M +K+ + +++TD+ +RGID E V+
Sbjct: 320 SRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVN 379
Query: 312 HIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS--IREIEKMGVTFQP 365
++N ++P D ++HR+GR+GR G G +T ++ + +R +K + P
Sbjct: 380 LVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLP 435
emb|CAB55686.2| (AL049557) dJ773A18.2 (PROBABLE ATP-DEPENDENT RNA HELICASE P47
HOMOLOG) [Homo sapiens]
Length = 824
Score = 160 bits (400), Expect = 3e-38
Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 13/356 (3%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FE+P+ VQ K IP+ G DL+ ++K+G+GKT F + + Q +I AP+RE
Sbjct: 82 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 141
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
+A QI+ + L F+GGT ++ +L+ H+ +G+PGRI LI+ +
Sbjct: 142 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC--HIAVGSPGRIKQLIELDY 199
Query: 141 LIVHTANTFVVDEADMTLDMG-FLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLH 199
L + F++DEAD L+ G F ++ I SS QML SAT P+ L L KY+
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMR 259
Query: 200 NPVMQKI--ANKTVIS-----DTIENWLVSTKGSSHNQLLLQLTKATNPY-MAMIFANTK 251
+P ++ ++ ++I + ++ ++ K LQ + P+ A++F+N
Sbjct: 260 DPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLH 319
Query: 252 GRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVS 311
R + L+S G I G++ +R M +K+ + +++TD+ +RGID E V+
Sbjct: 320 SRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVN 379
Query: 312 HIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS--IREIEKMGVTFQP 365
++N ++P D ++HR+GR+GR G G +T ++ + +R +K + P
Sbjct: 380 LVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLP 435
ref|NP_009135.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20, 103kD
>gi|5359631|gb|AAD42744.1|AF106019_1 (AF106019) DEAD-box
protein [Homo sapiens]
Length = 824
Score = 160 bits (400), Expect = 3e-38
Identities = 104/356 (29%), Positives = 183/356 (51%), Gaps = 13/356 (3%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAVITAPSRE 80
FE+P+ VQ K IP+ G DL+ ++K+G+GKT F + + Q +I AP+RE
Sbjct: 82 FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 141
Query: 81 LATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNA 140
+A QI+ + L F+GGT ++ +L+ H+ +G+PGRI LI+ +
Sbjct: 142 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC--HIAVGSPGRIKQLIELDY 199
Query: 141 LIVHTANTFVVDEADMTLDMG-FLADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLH 199
L + F++DEAD L+ G F ++ I SS QML SAT P+ L L KY+
Sbjct: 200 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMR 259
Query: 200 NPVMQKI--ANKTVIS-----DTIENWLVSTKGSSHNQLLLQLTKATNPY-MAMIFANTK 251
+P ++ ++ ++I + ++ ++ K LQ + P+ A++F+N
Sbjct: 260 DPTFVRLNSSDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLH 319
Query: 252 GRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVS 311
R + L+S G I G++ +R M +K+ + +++TD+ +RGID E V+
Sbjct: 320 SRAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVN 379
Query: 312 HIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS--IREIEKMGVTFQP 365
++N ++P D ++HR+GR+GR G G +T ++ + +R +K + P
Sbjct: 380 LVVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLP 435
gb|AAF23310.1|AC016661_35 (AC016661) putative RNA helicase [Arabidopsis thaliana]
Length = 989
Score = 158 bits (395), Expect = 1e-37
Identities = 112/375 (29%), Positives = 195/375 (51%), Gaps = 46/375 (12%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ 71
I TL+ + +EKP +Q + +PI++SGRD +G +KTGSGKT F+LP+ + I D V+
Sbjct: 407 ILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHI-KDQPPVE 465
Query: 72 A------VITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVV 125
A ++ AP+REL QIY ++F+K + V + GG+ A+QI +L+ +V
Sbjct: 466 AGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVY-GGSGVAQQISELKRG-TEIV 523
Query: 126 IGTPGRIHDLIKSNA---LIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF 182
+ TPGR+ D++ +++ + V+DEAD DMGF + +I + Q ++F
Sbjct: 524 VCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 583
Query: 183 SATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
SAT P++++ +K L+ PV ++ ++V++ I + S LL+L
Sbjct: 584 SATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEW--- 640
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
KG+V V R +++ ++ K+ ++AT +AA
Sbjct: 641 ------YEKGKV-------------------LVFVRSQEKSISDFKSDVCNLLIATSVAA 675
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGV 361
RG+D++ + ++N + P +VHRVGR+GR G +G A+T S D ++ K + +
Sbjct: 676 RGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALEL 735
Query: 362 TFQP-----KAIKDG 371
+ QP KA+ +G
Sbjct: 736 SEQPVPDDVKAVAEG 750
emb|CAA09212| (AJ010473) RNA helicase [Arabidopsis thaliana]
Length = 563
Score = 157 bits (393), Expect = 2e-37
Identities = 103/381 (27%), Positives = 182/381 (47%), Gaps = 22/381 (5%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F F + +E+ F+ T VQE +P++L G+D++ ++KTG+GKT FLLP +
Sbjct: 81 RFDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIE 140
Query: 62 KI--------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQ 113
+ D + ++ P+RELA Q A K + + V +GGT +
Sbjct: 141 AVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTE 200
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSN---ALIVHTANTFVVDEADMTLDMGFLADVDQIA 170
++L+ S +++ TPGR+ D I + A + V+DEAD LDMGF ++++I
Sbjct: 201 QRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERII 260
Query: 171 SSFGKRVQMLVFSATIPQKLQPFLKKYLHNP-----VMQKIANKTVISDTIENWLVSTKG 225
++ K+ Q +FSAT+ +++ L +Q+ A +T + +
Sbjct: 261 AAVPKQRQTFLFSATVSDEVRQICHVALKRDHEFVNCVQEGAGET--HQKVSQMYMIASL 318
Query: 226 SSHNQLLLQLTKA----TNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERK 281
H LL L K Y +IF T + L L V +IH P R
Sbjct: 319 DRHFSLLYGLLKKHITDNVGYKVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRT 378
Query: 282 RIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTA 341
R+ + + +V +D++ARG+D VS ++ +P D ++HR+GR+GR G +G
Sbjct: 379 RVSDEFRKSKSIILVTSDVSARGVDYPDVSLVVQMGLPSDREQYIHRLGRTGRKGKEGEG 438
Query: 342 ITLYSPSDDSSIREIEKMGVT 362
+ L +P ++ + ++ + +T
Sbjct: 439 VLLLAPWEEYFLSSVKDLPIT 459
emb|CAA21146.1| (AL031786) putative atp dependent rna helicase [Schizosaccharomyces
pombe]
Length = 606
Score = 155 bits (389), Expect = 5e-37
Identities = 120/378 (31%), Positives = 181/378 (47%), Gaps = 26/378 (6%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M F N ++ + F+K T VQ IP+ L +DLV E+ TGSGKT +LLP F
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 61 QKI---DTDLDEVQAVITAPSRELATQIYKAAQEFTKV-------NDKLRVSNFVGGTDK 110
K+ DTD + A+I AP+RELATQI+ +E KL ++GG
Sbjct: 61 DKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 111 -ARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQI 169
+ P VVIGTPGR+++++ S+ H ++DEAD +DMGF + I
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEML-SHISSKH-LEILILDEADTLIDMGFQRTLQSI 178
Query: 170 ASSFGKRVQMLVFSATIPQKLQPFLK-KYLHNPV-------MQKIANKTVISDTIENWLV 221
S K+ + +FSAT+ + FLK L N V +KI +T S I++ ++
Sbjct: 179 ISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVTVTSKKIDTRTPSSLAIQSLVI 238
Query: 222 STKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHH-FLTSN-GLKVAKIHGDVPPRE 279
Q ++ L A++F ++ V+ + FLT ++ +HG
Sbjct: 239 PP--IYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQQVQSN 296
Query: 280 RKRIMNSIKNLDYQYVV-ATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
R R K + + V+ TDIA+RG+DI V ++ + P D F HR GR+GR G
Sbjct: 297 RSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCGRAGRAGRA 356
Query: 339 GTAITLYSPSDDSSIREI 356
G AI L + + E+
Sbjct: 357 GVAIVLLNDGREEEYEEL 374
gb|AAF23349.1|AC016163_23 (AC016163) putative ATP-dependent RNA helicase [Arabidopsis
thaliana]
Length = 558
Score = 155 bits (387), Expect = 9e-37
Identities = 108/368 (29%), Positives = 171/368 (46%), Gaps = 13/368 (3%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLD--- 68
I + L+ FE T VQ + IP + S +D+V ++ TGSGKT FLLP + I
Sbjct: 27 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
Query: 69 ---EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVV 125
+V VI +P+REL+ QI+K A+ F + VGG + + LE +++
Sbjct: 87 KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLL 146
Query: 126 IGTPGRIHDLIKSNALI-VHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSA 184
IGTPGR+ D++K + ++DEAD LDMGF V+ I S K+ + +FSA
Sbjct: 147 IGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSA 206
Query: 185 TIPQKLQPFLKKYLHNP--VMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY 242
T Q + K L N V+ +K+ S + + + + L+ L
Sbjct: 207 TQTQAVADLAKAGLRNAMEVISGAESKSKTSSGLYCEYLKCEADQKSSQLVHLLIENKNK 266
Query: 243 MAMIFANTKGRVDD----IHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVAT 298
++F T VD + T + HG + + R + S ++ T
Sbjct: 267 KLVVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCT 326
Query: 299 DIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
D+AARG+DI G+ +++ + P+D F+HRVGR+ R QG AI P + + +
Sbjct: 327 DVAARGLDIPGIDYVVQYDPPQDPDVFIHRVGRTARMERQGRAIVFLMPKETDYVEFMRI 386
Query: 359 MGVTFQPK 366
V Q +
Sbjct: 387 RRVPLQER 394
emb|CAB60250.1| (AL132839) probable ATP-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 735
Score = 154 bits (385), Expect = 1e-36
Identities = 100/380 (26%), Positives = 188/380 (49%), Gaps = 14/380 (3%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI--- 59
F + L+N F TE+Q++ IP L GRD++G +KTGSGKT F++P+
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 60 -FQKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE 118
++K T LD + A++ +P+RELA Q ++ + +++ +GG + + ++L
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHS-FSAGLIIGGNNYKEEKERL- 158
Query: 119 SSQPHVVIGTPGRIHDLIKSNALIVHTANT--FVVDEADMTLDMGFLADVDQIASSFGKR 176
S+ ++++ TPGR+ I A+ T+ ++DEAD LDMGF +D I SS
Sbjct: 159 -SRMNILVCTPGRLLQHI-DQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIVSSLPVH 216
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVIS--DTIENWLVSTKGSSHNQLLLQ 234
Q ++FSAT + ++ + L NP + S + + ++ + +L
Sbjct: 217 RQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILFG 276
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSN--GLKVAKIHGDVPPRERKRIMNSIKNLDY 292
+ + ++F ++ +V ++ G+ + +HG R + + +
Sbjct: 277 FIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRH 336
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
+ TDI ARG+D V +I + P+D+ ++HRVGR+ R G A+ L PS+++
Sbjct: 337 VVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEAF 396
Query: 353 IREIEKMGVTFQPKAIKDGE 372
++ +E + + +KDG+
Sbjct: 397 LKRLESKKIAVERINVKDGK 416
gb|AAF33472.1| (AF233324) 97% identity with amino acids 1-317 of E. coli putative
ATP-dependent RNA helicase (RHLB) (SP:P24229); contains
similarity to Pfam family PF00270 (DEAD/DEAH box
helicase), score=186.5, E=4.6e-58, N=1 [Salmonella
typ...
Length = 328
Score = 152 bits (381), Expect = 4e-36
Identities = 99/311 (31%), Positives = 161/311 (50%), Gaps = 11/311 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF+DF + + LE F T +Q +P+ L+GRD+ G+++TG+GKT FL F
Sbjct: 10 KFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTSTFH 69
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
+ D +++ +A+I AP+RELA QI+ A+ + L++ GG +Q+
Sbjct: 70 YLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG-LKLGLAYGGDGYDKQL 128
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFG 174
K LES ++IGT GR+ D K N + + V+DEAD D+GF+ D+ +
Sbjct: 129 KVLESGVD-ILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMP 187
Query: 175 KRVQML--VFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLL 232
Q L +FSAT+ +++ + ++N ++ + I+ L +LL
Sbjct: 188 PAAQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 247
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
L + P A+IFANTK R +DI L ++G +V + GDV ++R RI++ D
Sbjct: 248 QTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILDEFTRGDL 307
Query: 293 QYVVATDIAAR 303
+VATD+ AR
Sbjct: 308 DILVATDVGAR 318
gi|2367402 (U86382) mitochondrial DEAD box protein [Trypanosoma brucei]
Length = 546
Score = 152 bits (381), Expect = 4e-36
Identities = 113/404 (27%), Positives = 197/404 (47%), Gaps = 24/404 (5%)
Query: 3 FTDF-NFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
F+D N D++++ L++ F T +Q IP++ G D++G + TGSGKT F +P +
Sbjct: 119 FSDLDNLPDWLSKGLQSSGFSCTTPIQSYTIPVLDEGHDMIGLAPTGSGKTVAFAVPALK 178
Query: 62 KIDTDLD-EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
K + + V+ AP+REL Q K + + + K+RV GG + Q ++L +
Sbjct: 179 KFQWSPNGSPRIVVLAPTRELVQQTAKVFHQLS--SGKVRVCERYGGAPREAQARRLHNG 236
Query: 121 QPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR--VQ 178
V++ PGR+ D +++ +I + V DEAD LDMGF +D I F Q
Sbjct: 237 CD-VLVACPGRLKDFLQNGDVIFDEVSFLVFDEADRLLDMGFKVQLDDILGYFSSHRPAQ 295
Query: 179 MLVFSATIPQKLQPFLKKYL--HNPVMQKIANKT--VISDTIENWLVSTKGSSHN-QLLL 233
+++SAT P ++ ++YL + V++ T +++ I+ + + L+
Sbjct: 296 TMMWSATWPPVVEQLAQEYLSQNRYVIRSGTAGTGLQVNENIKQHIFFADAPEERVKTLV 355
Query: 234 QLTKA----TNPYMAMIFA----NTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMN 285
L K N MIF +T+ + L + + +HG + R+R IM
Sbjct: 356 SLIKEGKIDENTAKMMIFVERQTDTENAAYALARMLGIHSRCIGVVHGGMQQRQRDHIMG 415
Query: 286 SIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLY 345
K + +VATD+A+RG+D V+ ++N PK++ + HR+GR+GR G G + T
Sbjct: 416 IFKEGRIRILVATDVASRGLDFPDVTCVVNLIAPKNIDSYCHRIGRTGRAGRTGESFTFI 475
Query: 346 SPSDDSSIRE----IEKMGVTFQPKAIKDGEIVDSYDRDRREKR 385
SD S ++ +EK G+ + ++ E + +R KR
Sbjct: 476 GRSDGSLAKDLINYLEKCGMDVPQRLVEFAEEHAQGEEIKRMKR 519
emb|CAB64214.1| (AL132958) RNA helicase-like protein [Arabidopsis thaliana]
Length = 496
Score = 152 bits (380), Expect = 6e-36
Identities = 115/404 (28%), Positives = 201/404 (49%), Gaps = 27/404 (6%)
Query: 2 KFTDFNFKDYINQTLE-NIKFEKPTEVQEKLIPIVLSG--RDLVGESKTGSGKTHTFLLP 58
+F D N + + L +KFEKP+++Q +P++++ + L+ ++ GSGKT F+L
Sbjct: 92 RFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 59 IFQKIDTDLDEVQAVITAPSRELATQIYKAAQE---FTKVNDKLRVSNFVGGTDKARQIK 115
+ ++D L E QA+ P+RELA Q + Q+ FT + +L V + G A +
Sbjct: 152 MLSRVDPTLREPQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGA 211
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEAD-MTLDMGFLADVDQIASSFG 174
+ + HVVIGTPG + + L ++ V DEAD M GF D +I G
Sbjct: 212 PVSA---HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIG 268
Query: 175 K---RVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW-LVSTKGSSHNQ 230
+ Q+L+FSAT + ++ F+ + + +P + + + D+++ + +V K + +
Sbjct: 269 RVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIE 328
Query: 231 LLL-QLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKN 289
++ Q+ + + +IF TK +H L G V +HG++ +R +I+ K
Sbjct: 329 VIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKE 388
Query: 290 LDYQYVVATDIAARGIDIEGVSHIINDEIP-------KDLTFFVHRVGRSGRNGLQGTAI 342
Q ++ATD+ ARG D + V+ ++N +P D ++HRVGR+GR G +G
Sbjct: 389 CLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVF 448
Query: 343 TLYSPSDDSSIREI-EKMGVTFQP--KAIKDGEIVDSYDRDRRE 383
L DD +E+ EK+ F+ K IK + Y +E
Sbjct: 449 NLL--LDDGWDKEVMEKIEKYFEANVKEIKSWNSEEEYKSALKE 490
gb|AAC26676.1| (AC004483) putative RNA helicase [Arabidopsis thaliana]
Length = 845
Score = 151 bits (378), Expect = 1e-35
Identities = 105/376 (27%), Positives = 183/376 (47%), Gaps = 19/376 (5%)
Query: 23 KPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAV--------- 73
K T VQ+ + L G+D + ++KTG+GK+ FLLP + + ++ + V
Sbjct: 397 KMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVL 456
Query: 74 ITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIH 133
I P+RELA+QI + K +D + V +GGT ++LES ++I TPGR+
Sbjct: 457 ILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRLL 516
Query: 134 DLIKSNALIVH---TANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKL 190
D I++ + + F+VDEAD+ LD+GF DV++I ++ Q L+FSATIP+++
Sbjct: 517 DHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEV 576
Query: 191 QPFLKKYL---HNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKA----TNPYM 243
+ + L H+ + D ++ + SH L+ L K Y
Sbjct: 577 RRVSQLVLKRDHSYIDTIGLGCVETHDKVKQSCIVAPHESHFHLVPHLLKEHINNMPDYK 636
Query: 244 AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAAR 303
++F +T ++ L L V +IH P R + + K + +V +D++AR
Sbjct: 637 IIVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSAR 696
Query: 304 GIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTF 363
G++ V+ +I IP D ++HR+GR+GR G G + L +P + + E++ + +
Sbjct: 697 GMNYPDVTLVIQVGIPSDREQYIHRLGRTGREGKGGKGLLLIAPWERYFLDELKDLPLEP 756
Query: 364 QPKAIKDGEIVDSYDR 379
P D + D+
Sbjct: 757 IPAPDLDSRVKHQVDQ 772
emb|CAA68194| (X99938) RNA helicase [Arabidopsis thaliana]
Length = 671
Score = 151 bits (377), Expect = 1e-35
Identities = 119/386 (30%), Positives = 194/386 (49%), Gaps = 29/386 (7%)
Query: 27 VQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ----------AVITA 76
+Q +VL G DLVG ++TG GKT F+LPI + + + + ++
Sbjct: 122 IQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLL 181
Query: 77 PSRELATQIYKAAQEFTKVNDKLRVSN--FVGGTDKARQIKKLESSQPHVVIGTPGRIHD 134
P+RELA Q+ A +F L +S+ GG Q KL+ +V+GTPGRI D
Sbjct: 182 PTRELAKQV---AADFDAYGGSLGLSSCCLYGGDSIPVQEGKLKRGVD-IVVGTPGRIKD 237
Query: 135 LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF--GKRVQMLVFSATIPQKLQP 192
I+ L V+DEAD L MGF+ DV+ I +VQ L+FSAT+P ++
Sbjct: 238 HIERQNLDFSYFKFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKN 297
Query: 193 FLKKYLHNP--VMQKIAN-KTVISDTIENWLVSTKGSSHNQLLLQLTKA-TNPYMAMIFA 248
++L + + N K S+++ + + ++ +L+ + ++ +IFA
Sbjct: 298 ISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFA 357
Query: 249 NTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIE 308
TK +V ++ L + +HG++P +R+ + +N + +VAT++AARG+DI
Sbjct: 358 ETKVQVSELSGLLDGS----RALHGEIPQSQREVTLAGFRNGKFATLVATNVAARGLDIN 413
Query: 309 GVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEK-MGVTFQPKA 367
V II E P+++ ++HR GR+GR G G +TLY S SS+ IEK G+ F+ A
Sbjct: 414 DVQLIIQCEPPREVEAYIHRSGRTGRAGNTGVPVTLYD-SRKSSVSRIEKEAGIKFEHLA 472
Query: 368 I-KDGEIVDSYDRDRREKRTKKQDEI 392
+ EI S + EK + D +
Sbjct: 473 APQPDEIARSGGMEAAEKVKQVCDSV 498
emb|CAA68193| (X99937) RNA helicase [Spinacia oleracea]
Length = 685
Score = 150 bits (376), Expect = 2e-35
Identities = 116/385 (30%), Positives = 182/385 (47%), Gaps = 47/385 (12%)
Query: 15 TLENIKFEKPTE-------------VQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+L N + KP + +Q V+ G DLVG ++TG GKT F+LPI +
Sbjct: 108 SLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVE 167
Query: 62 KI----DTDLDEV------QAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
+ DL ++ P+RELATQ+ Q + L + GG
Sbjct: 168 SLVNGRTKDLRRSGHGRLPSVLVLLPTRELATQVLADFQVYGGAVG-LTACSVYGGAPFH 226
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
QI L +V+GTPGR+ DL++ L + + V+DEAD L MGF+ DV+ I
Sbjct: 227 SQISSLTRGVD-IVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILG 285
Query: 172 SFG--KRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTV--ISD-------TIENWL 220
+VQ L+FSAT+P ++ ++L K A KTV +SD ++ + +
Sbjct: 286 KVDHVSKVQTLLFSATLPSWVKQISTRFL------KSAKKTVDLVSDQKMKASISVRHIV 339
Query: 221 VSTKGSSHNQLLLQLTKATNPY-MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRE 279
+ S+ L+ + + ++IF TK + LT +HGD+ +
Sbjct: 340 IPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLTG----ARPLHGDIQQTQ 395
Query: 280 RKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQG 339
R+ + + + +VAT++AARG+DI V II E P+D+ ++HR GR+GR G G
Sbjct: 396 REVTLKGFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTG 455
Query: 340 TAITLYSPSDDSSIREIEKMGVTFQ 364
A+ LY P S + + GV F+
Sbjct: 456 VAVMLYDPKRSSVTKIERESGVKFE 480
emb|CAB53334.1| (AL109974) putative DEAD-box RNA-helicase [Streptomyces coelicolor
A3(2)]
Length = 439
Score = 149 bits (372), Expect = 5e-35
Identities = 98/363 (26%), Positives = 175/363 (47%), Gaps = 8/363 (2%)
Query: 14 QTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ-- 71
+T+ ++ +P +Q +P L+GRD++G ++TGSGKT F L + E +
Sbjct: 20 ETMTSLGVTRPFPIQAATLPEALAGRDVLGRARTGSGKTLAFGLALLAGTAGRRAEPKRP 79
Query: 72 -AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPG 130
A++ +RELA Q+ A + + +R++ VGG RQ + L VV+ TPG
Sbjct: 80 LALVLVSTRELAQQVSDALAPYARALG-VRLTTVVGGLSINRQTQALRDGA-EVVVATPG 137
Query: 131 RIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQKL 190
R+ DL+ ++ V+DEAD D+GFL V I Q L+FSAT+ +
Sbjct: 138 RLTDLVSRRDCHLNQVRITVLDEADQMCDLGFLPQVSGILDQVPSDGQRLLFSATLDGDV 197
Query: 191 QPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANT 250
++ +LH+PV + + T+E+ +++ + ++ A ++F +T
Sbjct: 198 DQLVRDHLHDPVPVSVDPASASVSTMEHHVLTVHPADKYATATEI--AARDGRVLMFLDT 255
Query: 251 KGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGV 310
K VD L + G+ +H +R + +VAT++AARGI ++ +
Sbjct: 256 KAGVDRFTRELRAAGVSAGALHSGKSQPQRTHTLARFVEGGVTVLVATNVAARGIHVDDL 315
Query: 311 SHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI-REIEKMGVTFQPKAIK 369
++N + P D ++HR GR+ R G G+ +TL +P + R + + G+ ++
Sbjct: 316 DLVVNVDPPADAKDYLHRGGRTARAGRAGSVVTLVTPDQRREVNRMMSEAGIRPTVTPVR 375
Query: 370 DGE 372
GE
Sbjct: 376 SGE 378
ref|NP_004389.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase)
>gi|3121981|sp|Q13206|DD10_HUMAN PROBABLE ATP-DEPENDENT
RNA HELICASE DDX10 (DEAH BOX PROTEIN 10) >gi|1142710
(U28042) similar to DEAD box RNA helicases [Homo
sapiens] >gi|1589113|prf||2210303A RNA helicase [Homo
sapiens]
Length = 875
Score = 147 bits (368), Expect = 1e-34
Identities = 97/383 (25%), Positives = 188/383 (48%), Gaps = 12/383 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F+DF + L+ ++ TE+Q++ I + L G+D++G +KTGSGKT FL+P+ +
Sbjct: 70 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLE 129
Query: 62 KID----TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+ T D + +I +P+RELA Q ++ ++ K +D +GG D + +++
Sbjct: 130 ALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD-FSAGLIIGGKDLKHEAERI 188
Query: 118 ESSQPHVVIGTPGRIHDLIKSNALIVHT-ANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
+ ++++ TPGR+ + T V+DEAD LDMGF ++ + + K+
Sbjct: 189 NNI--NILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKK 246
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISD--TIENWLVSTKGSSHNQLLLQ 234
Q L+FSAT + ++ + L NP + K S T+E + + +L
Sbjct: 247 RQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKAKYSTPATLEQNYIVCELQQKISVLYS 306
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTS--NGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
++ +++F ++ V ++ G+ + +HG R + N
Sbjct: 307 FLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRA 366
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSS 352
+ ATDIAARG+D V+ ++ + P+D ++HR GR+ R G A+ + PS+ +
Sbjct: 367 AVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILLPSEKAM 426
Query: 353 IREIEKMGVTFQPKAIKDGEIVD 375
++++ + V + I +++D
Sbjct: 427 VQQLLQKKVPVKEIKINPEKLID 449
sp|Q09916|YAK2_SCHPO PUTATIVE ATP-DEPENDENT RNA HELICASE C1F7.02C
>gi|2130294|pir||S62574 hypothetical protein SPAC1F7.02c
- fission yeast (Schizosaccharomyces pombe)
>gi|1067204|emb|CAA91949.1| (Z67998) probable
ATP-dependent RNA helicase [Schizosaccharomyces pombe]
Length = 578
Score = 145 bits (363), Expect = 6e-34
Identities = 105/372 (28%), Positives = 183/372 (48%), Gaps = 14/372 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF+D + I + ++ + FE TE+Q++ IP +L+GRD++G +KTGSGKT FL+P +
Sbjct: 90 KFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE 149
Query: 62 KIDT----DLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+ + +I +P+RELA QI+ A+E K + + +GG ++ + KL
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQ-TFGIVIGGANRRAEADKL 208
Query: 118 ESSQPHVVIGTPGRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF-GK 175
++++ TPGR+ D L + + + V+DEAD L++GF ++ QI +
Sbjct: 209 VKG-VNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDEMRQIMKILPSE 267
Query: 176 RVQMLVFSATIPQKLQPFLKKYLH-NPVMQKI--ANKTVISDTIENWLVSTKGSSHNQLL 232
Q L+FSAT K++ + L P+ + T + +E V LL
Sbjct: 268 NRQTLLFSATQTTKVEDLARISLKPGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLL 327
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
K ++F ++ V + L L V +HG + R N +
Sbjct: 328 FSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEK 387
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGT--AITLYSPSDD 350
++ T++AARG+DI V I+ + P D ++HRVGR+ R G +GT ++ +PS+
Sbjct: 388 GILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTAR-GTKGTGKSLMFLAPSEL 446
Query: 351 SSIREIEKMGVT 362
+R ++ V+
Sbjct: 447 GFLRYLKTAKVS 458
ref|NP_009173.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (Dbp5, yeast,
homolog) >gi|5701850|emb|CAB52189.1| (AJ237946) DEAD Box
Protein 5 [Homo sapiens]
Length = 479
Score = 145 bits (362), Expect = 7e-34
Identities = 110/393 (27%), Positives = 191/393 (47%), Gaps = 21/393 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSG--RDLVGESKTGSGKTHTFLLPIF 60
F + K + Q + + F +P+++QE +P++L+ ++L+ +S++G+GKT F+L +
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+++ Q + +P+ ELA Q K ++ K +L+++ V G R K E
Sbjct: 154 SQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQ- 212
Query: 121 QPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEAD-MTLDMGFLADVDQIASSFGKRVQ 178
+VIGTPG + D I FV+DEAD M G +I + Q
Sbjct: 213 ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQ 269
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTK 237
ML+FSAT + F +K + +P + K+ + DTI+ + V Q L L
Sbjct: 270 MLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYG 329
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
A AMIF +T+ + L+ G +VA + G++ +R ++ + + +V
Sbjct: 330 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 389
Query: 298 TDIAARGIDIEGVSHIINDEIP------KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS 351
T++ ARGID+E VS +IN ++P D ++HR+GR+GR G +G A+ +
Sbjct: 390 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM 449
Query: 352 SIREIEKMGVTFQPKAIKDGEIVDSYDRDRREK 384
+I + ++ F K E +D+ D D EK
Sbjct: 450 NI--LNRIQEHFNKKI----ERLDTDDLDEIEK 476
ref|NP_031942.1|| eukaryotic translation initiation factor 4A related sequence 1
>gi|6014947|sp|Q61655|DEA5_MOUSE DEAD-BOX RNA HELICASE
DEAD5 (MDEAD5) (EUKARYOTIC TRANSLATION INITIATION FACTOR
4A RELATED SEQUENCE 1) >gi|407992 (L25125) RNA helicase
[Mus musculus]
Length = 478
Score = 145 bits (362), Expect = 7e-34
Identities = 110/393 (27%), Positives = 192/393 (47%), Gaps = 21/393 (5%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSG--RDLVGESKTGSGKTHTFLLPIF 60
F + K + Q + + F +P+++QE +P++L+ ++L+ +S++G+GKT F+L +
Sbjct: 93 FEELRLKPQLLQGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAML 152
Query: 61 QKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESS 120
+++ Q + +P+ ELA Q K ++ K + +L+++ V G R K E
Sbjct: 153 SRVEPADRYPQCLCLSPTYELALQTGKVIEQMGKFHPELKLAYAVRGNKLERGQKVSEQ- 211
Query: 121 QPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEAD-MTLDMGFLADVDQIASSFGKRVQ 178
+VIGTPG + D I FV+DEAD M G +I + Q
Sbjct: 212 ---IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIVPRNCQ 268
Query: 179 MLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN-QLLLQLTK 237
ML+FSAT + F +K + +P + K+ + DTI+ + V Q L L
Sbjct: 269 MLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLYG 328
Query: 238 ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
A AMIF +T+ + L+ G +VA + G++ +R ++ + + +V
Sbjct: 329 AITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVT 388
Query: 298 TDIAARGIDIEGVSHIINDEIP------KDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS 351
T++ ARGID+E VS +IN ++P D ++HR+GR+GR G +G A+ +
Sbjct: 389 TNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSM 448
Query: 352 SIREIEKMGVTFQPKAIKDGEIVDSYDRDRREK 384
+I + ++ F K E +D+ D D EK
Sbjct: 449 NI--LNRIQEHFNKKI----ERLDTDDLDEIEK 475
gb|AAD32817.1|AC007660_18 (AC007660) ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 609
Score = 143 bits (358), Expect = 2e-33
Identities = 114/458 (24%), Positives = 199/458 (42%), Gaps = 87/458 (18%)
Query: 13 NQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ- 71
+Q E + FE PT VQ + IP++LSGRD++ + TG+GKT +L P+ + +V
Sbjct: 42 DQLKERMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDR 101
Query: 72 -----AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVI 126
A++ P+REL Q+Y+ ++ + +GG KA++ +L ++I
Sbjct: 102 SHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKG-ISILI 160
Query: 127 GTPGRIHDLIKSNALIVHTANTFVV-DEADMTLDMGFLADVDQIASSFGK---------- 175
TPGR+ D +K+ A VH +V+ DEAD L++G+ +++QI G
Sbjct: 161 ATPGRLLDHLKNTASFVHKNLRWVIFDEADSILELGYGKEIEQIIKLLGSGQNEQGEEDD 220
Query: 176 ------RVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHN 229
+ Q L+ SAT+ K+ K L +PVM + N T + + + S
Sbjct: 221 IVPKGIQKQNLLLSATLNDKVNDLAKLSLDDPVMIGLDN-TKLQQNLSIESPAAPDSDAE 279
Query: 230 QLLLQLTKATNP----------------------------------------YMAMIFAN 249
+++ + K+ NP ++F +
Sbjct: 280 DMVIHVNKSANPLSEDYGIPSQLVQRYLRVPCGARLVALLSVLKNLFEREASQKVVVFFS 339
Query: 250 TKGRVDDIHHFLTSN-------------------GLKVAKIHGDVPPRERKRIMNSIKNL 290
T+ V D H+ L S K ++HG + +R+ + K
Sbjct: 340 TRDAV-DFHYSLLSEFQWPPNSETEEEGTKELFLKCKTFRLHGSMEQEDRRSAFGTFKTE 398
Query: 291 DYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD 350
+++TD+AARG+D V II + P + T +VHRVGR+ R G +G A+ P +
Sbjct: 399 KQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEYVHRVGRTARIGEKGEALLFLQPIEI 458
Query: 351 SSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKK 388
++E++K G + + +++D + R KK
Sbjct: 459 DYLKELKKHGASLTEYPLM--KVLDKFPIPGNMPRIKK 494
dbj|BAA21410| (AB004535) ATP-DEPENDENT RNA HELICASE MSS116 PRECURSOR
[Schizosaccharomyces pombe]
Length = 535
Score = 143 bits (358), Expect = 2e-33
Identities = 104/371 (28%), Positives = 186/371 (50%), Gaps = 22/371 (5%)
Query: 15 TLENIKFEKPTEVQEKLIPIVLSGRD-LVGESKTGSGKTHTFLLPIFQKI-----DTDLD 68
+L FEK T VQ++++ V + V ++KTG+GKT FLL F+ + +
Sbjct: 52 SLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSS 111
Query: 69 EVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGT 128
++ +VI +P+RELA QI++ A++ T +RVS +GG K R+ + +++I T
Sbjct: 112 KIHSVILSPTRELALQIFEEARKLT-YGTGIRVSYAIGGNSKMREENAIRRGNANLLIAT 170
Query: 129 PGRIHDLIKSNALIVH-TANTFVVDEADMTLDMGFLADVDQIASSFGK-RVQMLVFSATI 186
PGR+ D +++ ++ + ++F++DEAD +DMGF + I + + + L FSAT+
Sbjct: 171 PGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATM 230
Query: 187 PQKLQPFLKKYLHNP---VMQKIANKTVISDTIENWLVSTK----GSSHNQLLLQLTKAT 239
P K+ + L + N+ + + +++ TK SS LL QLT +
Sbjct: 231 PPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQLTSSN 290
Query: 240 NPYMAMIFANTKGRVDDIHHFLTSNGLKVAK--IHGDVPPRERKRIMNSIKNLDYQYVVA 297
++F T VD + L N LK+ +H + +R+ I S + + A
Sbjct: 291 PSSRIIVFLPTISMVDFVGGVL-ENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFA 349
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDD---SSIR 354
TD+ ARG+D ++ ++ P + ++HR+GR+GR G G A + + +SI+
Sbjct: 350 TDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYLILLEQEKPFLNSIK 409
Query: 355 EIEKMGVTFQP 365
+ T +P
Sbjct: 410 HLPLKRATIEP 420
emb|CAA09374| (AJ010840) ATP-dependent RNA helicase [Homo sapiens]
Length = 420
Score = 143 bits (356), Expect = 4e-33
Identities = 109/390 (27%), Positives = 197/390 (49%), Gaps = 22/390 (5%)
Query: 21 FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDE-VQAVITAPSR 79
F+ PT +Q + IP++L GR+L+ + TGSGKT F +PI ++ ++ +A+I +P+R
Sbjct: 6 FQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTR 65
Query: 80 ELATQIYKAAQEFTKVNDK--LRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIK 137
ELA+QI++ E K+++ R+ A++ S + +++ TP R+ L+K
Sbjct: 66 ELASQIHR---ELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 122
Query: 138 SNALIVHTANT--FVVDEADMTLDMGFLADVDQIASSF----GKRVQMLVFSATIPQKLQ 191
+ + A+ VVDE+D + G DQ+AS F +V+ +FSA + L
Sbjct: 123 QDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSAILHMMLN 182
Query: 192 PFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ---LTKATNPYMAMIFA 248
+ + +T+E L+ GS +LL + K NP + ++F
Sbjct: 183 SGANSTWTMSSVCPFGARNSAVETVEQELLFV-GSETGKLLAVRELVKKGFNPPV-LVFV 240
Query: 249 NTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIE 308
+ R ++ H L G+ V IH + ++R ++S + ++ T + ARGID +
Sbjct: 241 QSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFK 300
Query: 309 GVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIRE----IEKMGVTFQ 364
GV+ +IN + P ++HR+GR+GR G +G AIT ++ D +R I++ G
Sbjct: 301 GVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPV- 359
Query: 365 PKAIKDGEIVDSYDRDRREKRTKKQDEIST 394
P+ IK + + S + + K+ +++ IST
Sbjct: 360 PEYIKGFQKLLSKQKKKMIKKPLERESIST 389
ref|NP_011189.1|SPB4| ATP-dependent RNA helicase; Spb4p >gi|134787|sp|P25808|SPB4_YEAST
ATP-DEPENDENT RRNA HELICASE SPB4 >gi|83511|pir||S14942
RNA helicase SPB4 - yeast (Saccharomyces cerevisiae)
>gi|4522|emb|CAA34272| (X16147) spb4 protein product (AA
1-606) [Saccharomyces cerevisiae]
>gi|836754|dbj|BAA09238.1| (D50617) rRNA helicase
[Saccharomyces cerevisiae] >gi|870818|dbj|BAA08033|
(D44600) PUTATIVE RRNA HELICASE SPB4 [Saccharomyces
cerevisiae]
Length = 606
Score = 141 bits (352), Expect = 1e-32
Identities = 110/416 (26%), Positives = 190/416 (45%), Gaps = 34/416 (8%)
Query: 6 FNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDT 65
F+ +I L+ + FE T VQ IP++ +D+V +S TGSGKT F++P+ +K+
Sbjct: 12 FSLLPWIRTGLDVMGFETMTPVQASTIPMLAGNKDVVVDSVTGSGKTAAFVIPVLEKVVK 71
Query: 66 DLDEVQ--------AVITAPSRELATQIYKAAQEFTK--VNDKLRVS-NFVGGTDKAR-- 112
+ ++I AP+REL+ QI F + +D + + GT++A
Sbjct: 72 EEANTSKFKKAHFHSLIIAPTRELSRQIESVVLSFLEHYPSDLFPIKCQLLVGTNEATVR 131
Query: 113 -QIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIAS 171
+ ++P ++IGTPGR+ D ++ A+ + V+DEAD LDM F+ D ++I
Sbjct: 132 DDVSNFLRNRPQILIGTPGRVLDFLQMPAVKTSACSMVVMDEADRLLDMSFIKDTEKILR 191
Query: 172 SFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQL 231
K+ + +FSAT+ K L NPV + +K +++ + QL
Sbjct: 192 LLPKQRRTGLFSATMRSAGSDIFKTGLRNPVRITVNSKNQAPSSLKLNYCVVNPAEKLQL 251
Query: 232 LLQLTKATNPYMAMIFANTKGRVDDIHHF--------LTSNGLKVAKIHGDVPPRERKRI 283
L+ + +++ T V + F + N +++ +HG + R +
Sbjct: 252 LVSILNNYKFKKCIVYFPTCVSVSYFYSFIQYLGKRNILVNEVEIFSLHGKLQTSARTKT 311
Query: 284 MNSI-KNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAI 342
+ + +L + TD+AARGIDI V +I + P + F+HR GR+GR G AI
Sbjct: 312 LTAFTDSLSNSVLFTTDVAARGIDIPDVDLVIQLDPPTNTDMFMHRCGRTGRANRVGKAI 371
Query: 343 TLYSPSDDS------SIREIEKMGVTFQPKAIKDGEIVD-----SYDRDRREKRTK 387
T + + ++ +E + + K I D DRDR +K K
Sbjct: 372 TFLNEGREEDFIPFMQVKNVELEELDLEVKGITTNFYEDFRNWILEDRDRFDKGVK 427
gi|3165536 (AF067608) similar to DEAD-box helicases (Pfam: DEAD.hmm, score:
262.89) (Pfam: helicase_C.hmm, score: 76.21)
[Caenorhabditis elegans]
Length = 571
Score = 140 bits (349), Expect = 2e-32
Identities = 103/362 (28%), Positives = 176/362 (48%), Gaps = 19/362 (5%)
Query: 14 QTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDT----DLDE 69
+ ++ + F TE+Q K I +L G+D++ +KTGSGKT FLLP + + +
Sbjct: 81 KAVQGLGFTTMTEIQAKSIDPLLEGKDVLASAKTGSGKTLAFLLPAIELLHKLNWKQHNG 140
Query: 70 VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTP 129
+I +P+REL+ Q Y E + L +GG++++ + KL +++ TP
Sbjct: 141 TGVIIVSPTRELSMQTYGVLSELLE-GSNLTYGLVMGGSNRSAEKDKLAKGVS-ILVATP 198
Query: 130 GRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQ 188
GR+ D L ++ +V ++DEAD LD+GF ++ Q+ K+ Q ++FSAT
Sbjct: 199 GRLLDHLQNTDNFLVRNMKCLIIDEADRILDIGFEIEMQQVLRHLPKQRQSMLFSATHSP 258
Query: 189 KLQPFLKKYLH-NPVMQKI---ANKTVISDTIENWLVSTKGSSHNQLLLQLT--KATNPY 242
K+ +K LH NPV + A + + + ++V+ S +LLL T K
Sbjct: 259 KVDELVKLALHSNPVRVSVHEKAEEATVEGLQQGYIVA---PSDKRLLLLFTFLKKNKTK 315
Query: 243 MAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAA 302
M+F ++ V H L + IHG ++R + ++ TD+AA
Sbjct: 316 KVMVFFSSCNSVKFHHELLNYIDIPCMSIHGKQKQQKRTTTFFQFCQAETGILLCTDVAA 375
Query: 303 RGIDIEGVSHIINDEIPKDLTFFVHRVGRS--GRNGLQGTAITLYSPSDDSSIREIEKMG 360
RG+DI V I+ + + ++HRVGR+ G NG G A+ + P + +R ++
Sbjct: 376 RGLDIPAVDWIVQYDPTDEPREYIHRVGRTARGTNG-SGKALLVLRPEELGFLRYLKAAK 434
Query: 361 VT 362
VT
Sbjct: 435 VT 436
ref|NP_009700.1|MAK5| Probable pre-mRNA splicing RNA-helicase; Mak5p
>gi|586550|sp|P38112|MAK5_YEAST ATP-DEPENDENT RNA
HELICASE MAK5 >gi|626824|pir||S46011 probable
pre-mRNA-splicing RNA helicase - yeast (Saccharomyces
cerevisiae) >gi|536442|emb|CAA85100| (Z36011) ORF
YBR142w [Saccharomyces cerevisiae]
>gi|547578|emb|CAA55539| (X78937) DEAD box helicase (S)
[Saccharomyces cerevisiae]
Length = 773
Score = 140 bits (349), Expect = 2e-32
Identities = 121/449 (26%), Positives = 203/449 (44%), Gaps = 73/449 (16%)
Query: 12 INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ 71
I Q+L+N+ F +PTE+Q+K IP+++ G D++G++ TGSGKT + +PI +K+ ++ +
Sbjct: 182 ILQSLQNLNFLRPTEIQKKSIPVIMQGVDVMGKASTGSGKTLAYGIPIVEKLISNFSQKN 241
Query: 72 ----AVITAPSRELATQI---YKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE-SSQPH 123
++I P+RELA Q+ K E + + + GG +Q + L+ +
Sbjct: 242 KKPISLIFTPTRELAHQVTDHLKKICEPVLAKSQYSILSLTGGLSIQKQQRLLKYDNSGQ 301
Query: 124 VVIGTPGRIHDLI-KSNALI--VHTANTFVVDEADMTLDMGFLADVDQI----------- 169
+VI TPGR +L+ K N LI NT ++DEAD L G + ++I
Sbjct: 302 IVIATPGRFLELLEKDNTLIKRFSKVNTLILDEADRLLQDGHFDEFEKIIKHLLVERRKN 361
Query: 170 ---ASSFGKRVQMLVFSATIPQKLQPFL--------KKYLHNP---------VMQKI--A 207
+ K Q L+FSAT L L +++ +N +M KI
Sbjct: 362 RENSEGSSKIWQTLIFSATFSIDLFDKLSSSRQVKDRRFKNNEDELNAVIQHLMSKIHFN 421
Query: 208 NKTVISDTIENWLVSTKGSS--------HNQLLLQLTKATNPYMAMIFANTKGRVDDIHH 259
+K VI DT VS++ L P +IF N V +
Sbjct: 422 SKPVIIDTNPESKVSSQIKESLIECPPLERDLYCYYFLTMFPGTTLIFCNAIDSVKKLTV 481
Query: 260 FLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ----------------YVVATDIAAR 303
+L + G+ +IH + + R + + K + ++A+D+AAR
Sbjct: 482 YLNNLGIPAFQIHSSMTQKNRLKSLERFKQQSAKQKTINHSNPDSVQLSTVLIASDVAAR 541
Query: 304 GIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTF 363
G+DI GV H+I+ +P+ ++HR GR+ R G +G + + SP + S+ + K+ T
Sbjct: 542 GLDIPGVQHVIHYHLPRSTDIYIHRSGRTARAGSEGVSAMICSPQE--SMGPLRKLRKTL 599
Query: 364 QPKAIKDGEIVDSYDRDRREKRTKKQDEI 392
A K+ D R K K Q+ +
Sbjct: 600 ---ATKNSVSTDLNSRSTNRKPIKWQNTV 625
gb|AAD27766.1|AF077033_1 (AF077033) putative ATP-dependent RNA helicase ROK1 [Homo sapiens]
Length = 598
Score = 139 bits (347), Expect = 4e-32
Identities = 107/405 (26%), Positives = 204/405 (49%), Gaps = 21/405 (5%)
Query: 5 DFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKID 64
++ + Q + + F+ PT +Q + IP++L GR+L+ + TGSGKT F +PI ++
Sbjct: 169 EYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 228
Query: 65 TDLDE-VQAVITAPSRELATQIYKAAQEFTKVNDK--LRVSNFVGGTDKARQIKKLESSQ 121
++ +A+I +P+RELA+QI++ E K+++ R+ A++ S +
Sbjct: 229 QPANKGFRALIISPTRELASQIHR---ELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKK 285
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANT--FVVDEADMTLDMGFLADVDQIASSFGK---R 176
+++ TP R+ L+K + + A+ VVDE+D L M ++ + S+ R
Sbjct: 286 FDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLLKMQTGSETSWLPFSWPAHPTR 345
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ-- 234
+ +FSAT ++ + + + + +T+E L+ GS +LL
Sbjct: 346 SEEPMFSATFAYDVEQWCNSTWTMSSVCPLEARNSAVETVEQELLFV-GSETGKLLAVRE 404
Query: 235 -LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQ 293
+ K NP + ++F + R ++ H L G+ V IH + ++R ++S +
Sbjct: 405 LVKKGFNPPV-LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIW 463
Query: 294 YVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSI 353
++ T + ARGID +GV+ +IN + P ++HR+GR+GR G +G AIT ++ D +
Sbjct: 464 VLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLL 523
Query: 354 RE----IEKMGVTFQPKAIKDGEIVDSYDRDRREKRTKKQDEIST 394
R I++ G P+ IK + + S + + K+ +++ IST
Sbjct: 524 RSVANVIQQAGCPV-PEYIKGFQKLLSKQKKKMIKKPLERESIST 567
ref|NP_014017.1|HAS1| Putative RNA-dependent helicase; Has1p
>gi|2500537|sp|Q03532|HAS1_YEAST PROBABLE ATP-DEPENDENT
RNA HELICASE HAS1 >gi|626265|pir||S47451 hypothetical
protein YMR290c - yeast (Saccharomyces cerevisiae)
>gi|530347|emb|CAA56799| (X80836) RNA helicase
[Saccharomyces cerevisiae]
Length = 505
Score = 139 bits (347), Expect = 4e-32
Identities = 102/384 (26%), Positives = 182/384 (46%), Gaps = 12/384 (3%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF + + +E + F T VQ + IP +L+GRD++G +KTGSGKT FL+P +
Sbjct: 43 KFEELKLSQPTLKAIEKMGFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIE 102
Query: 62 KIDT----DLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKL 117
+ + + ++ P+RELA QI+ A+E + + + +GG ++ ++ +KL
Sbjct: 103 LLHSLKFKPRNGTGIIVITPTRELALQIFGVARELMEFHSQT-FGIVIGGANRRQEAEKL 161
Query: 118 ESSQPHVVIGTPGRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSF-GK 175
+++I TPGR+ D L + + ++DEAD L++GF ++ QI +
Sbjct: 162 MKGV-NMLIATPGRLLDHLQNTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNE 220
Query: 176 RVQMLVFSATIPQKLQPFLKKYLH-NPVMQKIANKTVIS--DTIENWLVSTKGSSHNQLL 232
Q ++FSAT K++ + L P+ + +T S D +E V LL
Sbjct: 221 DRQSMLFSATQTTKVEDLARISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLL 280
Query: 233 LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
K ++F ++ V L L V ++HG ++R N +
Sbjct: 281 FSFLKRNQKKKIIVFLSSCNSVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAER 340
Query: 293 QYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGL-QGTAITLYSPSDDS 351
++ TD+AARG+DI V II + P D ++HRVGR+ R +G ++ +P++
Sbjct: 341 GILICTDVAARGLDIPAVDWIIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELG 400
Query: 352 SIREIEKMGVTFQPKAIKDGEIVD 375
+R ++ V + +I +
Sbjct: 401 FLRYLKASKVPLNEYEFPENKIAN 424
gi|3378056 (AF017777) helicase [Drosophila melanogaster]
Length = 560
Score = 138 bits (345), Expect = 7e-32
Identities = 94/392 (23%), Positives = 184/392 (45%), Gaps = 34/392 (8%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
++F + I + + + +++PT +Q IP++L G+D+V ++TGSGKT T+ LP+
Sbjct: 9 VQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLLEGKDVVVRARTGSGKTATYALPLI 68
Query: 61 QKI-----DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDK-LRVSNFVGGTDKARQI 114
QKI + V AV+ AP++EL Q K ++ + K +RV++ ++
Sbjct: 69 QKILNSKLNASEQYVSAVVLAPTKELCRQSRKVIEQLVESCGKVVRVADIADSSNDTVTQ 128
Query: 115 KKLESSQPHVVIGTPGRIHDLIKSNALI-VHTANTFVVDEADMTLDMGFLADVDQIASSF 173
+ S P +V+ TP + ++ +++ + T VVDEAD+ G+ D ++
Sbjct: 129 RHALSESPDIVVATPANLLAYAEAGSVVDLKHVETLVVDEADLVFAYGYEKDFKRLIKHL 188
Query: 174 GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVI-SDTIENWLVSTKGSSHNQLL 232
Q ++ SAT+ + L+NPV K+ ++ D + + + + + +L
Sbjct: 189 PPIYQAVLVSATLTDDVVRMKGLCLNNPVTLKLEEPELVPQDQLSHQRILAEENDKPAIL 248
Query: 233 LQLTK-ATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLD 291
L K ++IF N+ R + FL G++ ++ ++P R ++
Sbjct: 249 YALLKLRLIRGKSIIFVNSIDRCYKVRLFLEQFGIRACVLNSELPANIRIHTISQFNKGT 308
Query: 292 YQYVVATD-------------------------IAARGIDIEGVSHIINDEIPKDLTFFV 326
Y ++A+D A+RGID + V+++IN + P+D+T ++
Sbjct: 309 YDIIIASDEHHMEKPGGKSATNRKSPRSGDMESSASRGIDFQCVNNVINFDFPRDVTSYI 368
Query: 327 HRVGRSGRNGLQGTAITLYSPSDDSSIREIEK 358
HR GR+ R +G+ ++ S + +EK
Sbjct: 369 HRAGRTARGNNKGSVLSFVSMKESKVNDSVEK 400
ref|NP_006764.1|| DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 18 (Myc-regulated)
>gi|1498229|emb|CAA67295| (X98743) RNA helicase [Homo
sapiens]
Length = 610
Score = 138 bits (345), Expect = 7e-32
Identities = 115/378 (30%), Positives = 181/378 (47%), Gaps = 24/378 (6%)
Query: 3 FTDFNFKDYIN----QTLENIK---FEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTF 55
F D +F N TL+ IK F TE+Q K I +L GRDL+ +KTGSGKT F
Sbjct: 114 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAF 173
Query: 56 LLPIFQKIDT----DLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKA 111
L+P + I + +I +P+RELA Q + +E + +GG++++
Sbjct: 174 LIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM-THHVHTYGLIMGGSNRS 232
Query: 112 RQIKKLESSQPHVVIGTPGRIHDLIKSN-ALIVHTANTFVVDEADMTLDMGFLADVDQIA 170
+ +KL + ++++ TPGR+ D +++ + V+DEAD LD+GF ++ QI
Sbjct: 233 AEAQKLGNGI-NIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 291
Query: 171 SSFGKRVQMLVFSATIPQKLQPFL-----KKYLHNPVMQKIANKTVISDTIENWLVSTKG 225
R Q ++FSAT +K++ K+ L+ V AN TV D +E V
Sbjct: 292 KLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYVGVDDDKANATV--DGLEQGYVVCPS 349
Query: 226 SSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMN 285
LL K M+F ++ V + L L V IHG +R
Sbjct: 350 EKRFLLLFTFLKKNRKKKLMVFFSSCMSVKYHYELLNYIDLPVLAIHGKQKQNKRTTTFF 409
Query: 286 SIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGR--NGLQGTAIT 343
N D ++ TD+AARG+DI V I+ + P D ++HRVGR+ R NG +G A+
Sbjct: 410 QFCNADSGTLLCTDVAARGLDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNG-RGHALL 468
Query: 344 LYSPSDDSSIREIEKMGV 361
+ P + +R +++ V
Sbjct: 469 ILRPEELGFLRYLKQSKV 486
emb|CAA19304.1| (AL023776) probable atp-dependent rna helicase [Schizosaccharomyces
pombe]
Length = 595
Score = 136 bits (340), Expect = 3e-31
Identities = 94/323 (29%), Positives = 157/323 (48%), Gaps = 14/323 (4%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ- 61
F+DFN + + + +FEKPT VQ + IP+ L G+DLV +++TGSGKT +L+PI +
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILEL 75
Query: 62 -----KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDK-LRVSNFVGGTDKARQIK 115
+ID + + A++ P+RELA Q+Y ++ T K +R N + Q +
Sbjct: 76 LLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ-R 134
Query: 116 KLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK 175
L P +VI TP R + S L + V+DEAD+ L G+ D+ ++ S +
Sbjct: 135 PLLLDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPR 194
Query: 176 RVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQ- 234
Q + SAT+ + + K NP + + +K S + ++V K S ++ LL
Sbjct: 195 GTQSFLMSATLSKNIASLQKLVCRNPFILAVKDKEA-SGKLTQYVV--KCSEQDKFLLAY 251
Query: 235 --LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDY 292
L +IF N R + FL GLK ++ ++P R I+ Y
Sbjct: 252 ILLKLRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLY 311
Query: 293 QYVVATDIAARGIDIEGVSHIIN 315
Q ++ATD + +IE + + ++
Sbjct: 312 QIIIATDESGMMGEIEELENNVD 334
Score = 52.7 bits (124), Expect = 6e-06
Identities = 26/88 (29%), Positives = 46/88 (51%), Gaps = 16/88 (18%)
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSP-------------- 347
ARG+D E V+ ++N ++P + ++HR+GR+ R G GTA++ P
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKSEVGKHKPTSLES 446
Query: 348 --SDDSSIREIEKMGVTFQPKAIKDGEI 373
D+S +R +EK ++ QP + +I
Sbjct: 447 CKKDESVLRRLEKKQISLQPYSFDKNQI 474
gb|AAF09917.1|AE001894_1 (AE001894) ATP-dependent RNA helicase, putative [Deinococcus
radiodurans]
Length = 478
Score = 136 bits (338), Expect = 5e-31
Identities = 112/395 (28%), Positives = 183/395 (45%), Gaps = 44/395 (11%)
Query: 23 KPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKI-----DTDLDEVQAVITAP 77
+PT VQ K IP +L+GRD++ ++TGSGKT FL+P + T + +I +P
Sbjct: 49 EPTPVQAKAIPELLAGRDVIATARTGSGKTLAFLIPAAARGIGVTGKTRGMAPEVLIVSP 108
Query: 78 SRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIK 137
+RELA QI A+E + GG A + E+S VV GTPGR+ DLI
Sbjct: 109 TRELAVQIRDVARELG-----MTAGRITGGITPAATTR--EASNKGVVSGTPGRLKDLIG 161
Query: 138 SNALIVHTANTFVVDEADMTLDMGFLADVDQI-----ASSFGKRVQMLVFSATIPQKLQP 192
L + V+DEAD L +GFL DV+ I A + G +Q+ + SAT P++++
Sbjct: 162 KGELSLAHVRYVVLDEADELLSLGFLKDVEWIVNQARAQARGGEIQVALASATFPEEVRG 221
Query: 193 FLKKYLHNPVMQKI-ANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPY--------- 242
+ L NPV I +T + ++ V G + + + T
Sbjct: 222 VAARVLRNPVRIDIEPPRTAEAAPLKAGEVVAAGEGRAEHVARDTTRDEVLEHAAAEIRE 281
Query: 243 -------MAMIFANTKG----RVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLD 291
++F TK R + + L +V + G++ R+R+R+M+ +++
Sbjct: 282 ALREPGGCVVVFCRTKALTKRRAEKLGQLLPHE--EVVPLEGNMDQRKRERVMDKLRDGT 339
Query: 292 YQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS 351
+ +VATDIA RGID+ V +I+ ++ VHR GR+ R G G + P
Sbjct: 340 ARVLVATDIAGRGIDLPEVRLVIHADVATTSEDHVHRSGRTARAGRGGRNLVFIIPEQRQ 399
Query: 352 SIREIEK-MGVTFQPKAIKDGEIVDSYDRDRREKR 385
++ + + P ++ D+D +EK+
Sbjct: 400 RWAQVRRGLPAHLHPPKTAQEHLI---DKDIQEKQ 431
emb|CAB03153.1| (Z81094) Similarity to Xenopus ATP-dependent RNA helicase
(SW:AN3_XENLA); cDNA EST EMBL:D74563 comes from this
gene; cDNA EST EMBL:D27646 comes from this gene; cDNA
EST EMBL:D35057 comes from this gene; cDNA EST
EMBL:D35475 c...
Length = 995
Score = 135 bits (337), Expect = 6e-31
Identities = 115/421 (27%), Positives = 199/421 (46%), Gaps = 40/421 (9%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQK 62
+T+ I +TL+ IK+ +Q +IP VL G D++G+++T +GKT F LPI K
Sbjct: 383 WTNSGLHPTILETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPIIDK 442
Query: 63 IDTDLDEVQ----------AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKAR 112
I +E + A+I AP+RELA QI++A + + + D + + ++ G +D+AR
Sbjct: 443 ILRMDEETRNKARQDDGPLALILAPTRELAAQIHEALRTYCQNTDIIVLLSY-GQSDRAR 501
Query: 113 QIKKLESSQPHVVIGTPGRIHDL-IKSNALIVHTANTFVVDEADMTL-DM---------G 161
+ ++ + ++IGT GRI D +KS+ ++H V DEAD L DM
Sbjct: 502 SLNEIRNGCD-ILIGTCGRIMDFTVKSHISLLHL-RFLVFDEADRLLQDMKKDPLGHLGA 559
Query: 162 FLADVDQIASSFGKRVQML--VFSATIPQKLQPFLKKYLHNPVMQKIA------NKTVIS 213
+ D + S+ ++ M F+A++ +K+ M KI +K V
Sbjct: 560 IIKDAGFMESAATRQTIMTSATFNASVMTVANELMKRLPGQDEMIKIVLANGRLSKRVNL 619
Query: 214 DTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHG 273
+ E ++ K + ++L Q +IF K + D LTS G+ +HG
Sbjct: 620 EFFECKGLAEKNAKLREILKQNVNGKT-LKTIIFVQKKDQCDACAAKLTSGGMLAQTLHG 678
Query: 274 DVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIP-----KDLTFFVHR 328
D R++++N K+ +V TD+ +RGID+ + +IN ++P + F+HR
Sbjct: 679 DRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLDRVINFDLPDGDPDQGADTFIHR 738
Query: 329 VGRSGRNGLQ--GTAITLYSPSDDSSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKRT 386
GR+GR G + G ++ P D K+ + + D ++ D D + R
Sbjct: 739 AGRTGRTGRKENGLCVSFVDPQSDRDSLLAPKLVELIISQNLPDLKVPDFLDAMAKSSRG 798
Query: 387 K 387
K
Sbjct: 799 K 799
gb|AAD38584.1|AF145609_1 (AF145609) BcDNA.GH02833 [Drosophila melanogaster]
Length = 974
Score = 134 bits (335), Expect = 1e-30
Identities = 105/427 (24%), Positives = 182/427 (42%), Gaps = 88/427 (20%)
Query: 25 TEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQ------AVITAPS 78
T VQ+K IP VL G+D++ S+TGSGKT + LP+ + + +Q A++ P+
Sbjct: 351 TSVQQKTIPEVLQGKDVLVRSQTGSGKTLAYALPLVELLQKQQPRIQRKDGVLALVIVPT 410
Query: 79 RELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKS 138
REL Q Y+ Q+ K + + +GG + + +L +++IGTPGR+ D +
Sbjct: 411 RELVMQTYELIQKLVKPYTWIVPGSLLGGESRKSEKARLRKG-INILIGTPGRLVDHLLH 469
Query: 139 NALIVHTANTF-VVDEADMTLDMGFLADVDQIASSFGK-----------RVQMLVFSATI 186
A T F ++DEAD L++G+ DV Q+ + K ++Q ++ SAT+
Sbjct: 470 TASFKLTKLQFLILDEADRLLELGYERDVKQLVEAIDKQRAECEDKELPQLQRMLLSATL 529
Query: 187 PQKLQPFLKKYLHNPVMQKIANKTVIS----------DTIENWLVSTKGSSHNQ------ 230
++Q L NP+ +++ + +TIE L G Q
Sbjct: 530 TSQVQQLAGLTLKNPLYIDNSDEAASAALKSKDGYQKETIEALLEVDDGLGEYQEDVTGV 589
Query: 231 --------------------------LLLQLTKATNPYMAMIFANTKGRVDDIHHFLTS- 263
L ++ + + A++F +T V+ H L
Sbjct: 590 LSIPENLQLSYVVVPPKLRLVALSSLLAKEVDASPKQFKAIVFMSTTEMVNFHHDMLNEA 649
Query: 264 --------------------------NGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVA 297
GL+ K+HG + ER+ + ++ ++A
Sbjct: 650 LTRRVLDEEDEQEKGDSDDDGDIPLLQGLRFFKLHGSMTQTERQGVFRGFRDCASCVLLA 709
Query: 298 TDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE 357
TD+ RGID+ + ++ P+ FVHRVGR+ R G +G A+ +PS+ +R +E
Sbjct: 710 TDVVGRGIDVPDIKLVVQYTPPQTTADFVHRVGRTARAGRKGRAVLFLTPSEAQFVRHLE 769
Query: 358 KMGVTFQ 364
K + Q
Sbjct: 770 KKRIRIQ 776
ref|NP_013378.1|DBP9| putative RNA helicase; Dbp9p >gi|2500536|sp|Q06218|DBP9_YEAST
PROBABLE ATP-DEPENDENT RNA HELICASE DBP9
>gi|1077400|pir||S51412 hypothetical protein YLR276c -
yeast (Saccharomyces cerevisiae) >gi|577189 (U17245)
Ylr276cp [Saccharomyces cerevisiae]
Length = 594
Score = 133 bits (332), Expect = 2e-30
Identities = 108/443 (24%), Positives = 192/443 (42%), Gaps = 81/443 (18%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSG-RDLVGESKTGSGKTHTFLLPIFQ 61
F F+ + Q ++NI F+ PT +Q IP+ L RD++ ++ TGSGKT +L+P+ +
Sbjct: 19 FEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGSGKTLAYLIPVIE 78
Query: 62 KI--------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDK-LRVSNFVGGTDKAR 112
I + + + +I P+RELA Q+Y ++ K +R N +
Sbjct: 79 TILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCSKDIRTLN-ISSDMSDS 137
Query: 113 QIKKLESSQPHVVIGTPGRIHDLI--KSNALIVHTANTFVVDEADMTLDMGFLADVDQIA 170
+ L QP +++GTPG++ DL+ K N++ ++ VVDE D+ L G+ D+++I
Sbjct: 138 VLSTLLMDQPEIIVGTPGKLLDLLQTKINSISLNELKFLVVDEVDLVLTFGYQDDLNKIG 197
Query: 171 S--SFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSH 228
K +Q + SAT+ +Q +K+ +P + K ++ + + + K S
Sbjct: 198 EYLPLKKNLQTFLMSATLNDDIQALKQKFCRSPAILKFNDEEINKNQNKLLQYYVKVSEF 257
Query: 229 NQLL-------LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERK 281
++ L L L K +IF N R + + G+K ++ ++P R+
Sbjct: 258 DKFLLCYVIFKLNLIKG----KTLIFVNNIDRGYRLKLVMEQFGIKSCILNSELPVNSRQ 313
Query: 282 RIMNSIKNLDYQYVVATDI----------------------------------------- 300
I++ YQ ++ATD
Sbjct: 314 HIVDQFNKNVYQLLIATDDTEYIKEEDDEIEEGHNTENQEEKSLEGEPENDKKPSKKKKV 373
Query: 301 ---------AARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDS 351
+RG+D + V+ ++N ++P +VHRVGR+ R G GTAI+ P
Sbjct: 374 QVKKDKEYGVSRGVDFKNVACVLNFDLPTTAKSYVHRVGRTARGGKTGTAISFVVP---- 429
Query: 352 SIREIEKMGVTFQPKAIKDGEIV 374
++E K + A KD I+
Sbjct: 430 -LKEFGKHKPSMLQTAKKDERIL 451
emb|CAA16673| (AL021684) DEAD box ATP dependent helicase protein [Arabidopsis
thaliana]
Length = 633
Score = 131 bits (325), Expect = 2e-29
Identities = 97/382 (25%), Positives = 183/382 (47%), Gaps = 11/382 (2%)
Query: 3 FTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLP---- 58
F + D ++++ + F + T++Q K IP ++ G D++G ++TGSGKT FL+P
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVEL 215
Query: 59 IFQKIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLE 118
+++ T + ++ P+RELA Q Y A+E K + + V +GG +K + ++
Sbjct: 216 LYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQ-TVGKVIGG-EKRKTEAEIL 273
Query: 119 SSQPHVVIGTPGRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRV 177
+ ++++ TPGR+ D L +N I V+DEAD L+ F D+ +I + K
Sbjct: 274 AKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTR 333
Query: 178 QMLVFSATIPQKLQPFLKKYLHNPVMQKI--ANKTVISDTIE-NWLVSTKGSSHNQLLLQ 234
Q +FSAT K++ + L +PV + K V ++ +E + V LL
Sbjct: 334 QTSLFSATQSAKVEDLARVSLTSPVYIDVDEGRKEVTNEGLEQGYCVVPSAMRLLFLLTF 393
Query: 235 LTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQY 294
L + M+F +T +I G + +R +
Sbjct: 394 LKRFQGKKKIMVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGI 453
Query: 295 VVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGR-NGLQGTAITLYSPSDDSSI 353
++ T++AARG+D V I+ + P + T ++HRVGR+ R G +G A+ + +P + I
Sbjct: 454 LLCTNVAARGLDFPHVDWIVQYDPPDNPTDYIHRVGRTARGEGAKGKALLVLTPQELKFI 513
Query: 354 REIEKMGVTFQPKAIKDGEIVD 375
+ ++ + + ++ +++D
Sbjct: 514 QYLKAAKIPVEEHEFEEKKLLD 535
emb|CAA09201| (AJ010462) RNA helicase [Arabidopsis thaliana]
Length = 376
Score = 126 bits (314), Expect = 3e-28
Identities = 91/318 (28%), Positives = 154/318 (47%), Gaps = 8/318 (2%)
Query: 72 AVITAPSRELATQIYKAAQEFTKVND--KLRVSNFVGGTDKARQIKKLESSQPHVVIGTP 129
A + +P+RELA QI A++F + LR + VGG D+ +Q L +PHV++ TP
Sbjct: 12 ACVLSPTRELAIQI---AEQFEALGADISLRCAVLVGGIDRMQQTIAL-GKRPHVIVATP 67
Query: 130 GRIHD-LIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVFSATIPQ 188
GR+ D + + + + V+DEAD L+ F ++QI + +FSAT+ +
Sbjct: 68 GRLWDHMSDTKGFSLKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMTK 127
Query: 189 KLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFA 248
K++ + L NPV + A+K DT++ + L+ + +MIF
Sbjct: 128 KVRKLQRACLRNPVKIEAASKYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFT 187
Query: 249 NTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIE 308
T + L S G + I G + +R +N K + +V TD+A+RG+DI
Sbjct: 188 RTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASRGLDIP 247
Query: 309 GVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKM-GVTFQPKA 367
V +IN +IP + ++HRVGR+ R G G I+L + + +IEK+ G
Sbjct: 248 SVDVVINYDIPTNSKDYIHRVGRTARAGRSGVGISLVNQYELEWYIQIEKLIGKKLPEYP 307
Query: 368 IKDGEIVDSYDRDRREKR 385
++ E++ +R K+
Sbjct: 308 AEEDEVLSLLERVAEAKK 325
sp|P52271|Y308_MYCGE PROBABLE RNA HELICASE MG308 >gi|1361461|pir||A64234 ATP-dependent
RNA helicase (deaD) homolog MG308 - Mycoplasma
genitalium (SGC3) >gi|3844887 (U39711) ATP-dependent RNA
helicase, putative [Mycoplasma genitalium]
Length = 410
Score = 125 bits (311), Expect = 7e-28
Identities = 98/386 (25%), Positives = 178/386 (45%), Gaps = 31/386 (8%)
Query: 8 FKDYINQTLENIKFEKPTEVQE---KLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKID 64
F I Q L+ + + T++Q+ KL P ++++G ++TGSGKT +LLP+ KI+
Sbjct: 3 FSSSIRQFLDKKRIVEFTKIQQAVFKLWPF----QNIIGIAETGSGKTFAYLLPLLDKIN 58
Query: 65 TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHV 124
T LD+ QAVI P++EL QI E K F T SS+ +
Sbjct: 59 TSLDQPQAVIFVPTKELQWQIINILTEIKKY-----FKTFTFATSF--------SSKAQL 105
Query: 125 VIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLVF-S 183
++ L+ L V DE DM L+ + + F K + F S
Sbjct: 106 IVS-------LLNEKYLFTSKVRYVVFDEIDMFLEQSSIQQWLECVHLFQKAKPLFAFFS 158
Query: 184 ATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYM 243
AT+ + +KK + N + + K I +++++V + LL L K
Sbjct: 159 ATLFNQQLQIIKKQVINTKVINLHPKQWIHPLVKHFVVHLNTENRFSGLLALLKHHQNQQ 218
Query: 244 AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAAR 303
++F + + + + L++N + I+G + +ERK N + +V +D+ +R
Sbjct: 219 IIVFCSNQKSLKQLTQLLSNNNISFGSIYGSLTYQERKNNFTKATNNKLKLLVVSDLFSR 278
Query: 304 GIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTF 363
GID+ S +I+ ++PK +F++HR GR R G + ++ + S + ++ G+ F
Sbjct: 279 GIDLNYFSVVISWDLPKIDSFYIHRSGRVARLNSWGRSYLFWNDQNQSKLNKLIAKGIKF 338
Query: 364 QPKAI-KDGEIVDSYDRDRREKRTKK 388
Q ++ +G++ + + +K TKK
Sbjct: 339 QNVSLTSNGDL--KFLTENNQKTTKK 362
emb|CAA99891.1| (Z75546) similar to ATP dependent RNA helicase; cDNA EST
EMBL:Z14326 comes from this gene; cDNA EST EMBL:T01860
comes from this gene; cDNA EST EMBL:C12376 comes from
this gene; cDNA EST EMBL:C10649 comes from this gene;
cDNA ...
Length = 581
Score = 121 bits (300), Expect = 1e-26
Identities = 90/378 (23%), Positives = 179/378 (46%), Gaps = 35/378 (9%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
++F+D + + L +P+ +Q + IP + R+++ + TGSGKT F LP+
Sbjct: 126 LRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVI 185
Query: 61 QKI----------DTDLDEVQAVITAPSRELATQIYKAAQEFTK--VNDKLRVSNFVGGT 108
+I ++ ++ AV+ P+RELA Q Y EF K N + +NF G
Sbjct: 186 DEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYT---EFLKYCANTSISAANFSG-- 240
Query: 109 DKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADV-- 166
++ + +++ TP RI + + + + VVDE+D ++ D
Sbjct: 241 ------EETDIQHADILVSTPNRI--VFHLDKIDTSSLRWLVVDESDRLFEVVEGQDKCF 292
Query: 167 -DQIASSF----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLV 221
+Q+A+ + K ++ FSAT +++ + K+ + M + + + +++ L
Sbjct: 293 RNQLAAIYKACDAKCTRVAFFSATFSHEVEKWCKENIDEIGMVCVGERNSSNTSVKQKLT 352
Query: 222 STKGSSHNQLLLQ-LTKATNPYMAMIFANTKGRVDDIHHFLTS--NGLKVAKIHGDVPPR 278
++ ++ L + + A++F +K R + L++ + LKV I+ +
Sbjct: 353 YCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQLVKLLSAIDSNLKVDSINSGKSDK 412
Query: 279 ERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQ 338
ER M + + +V T++ RG+D+ V +IN ++P + ++HRVGR+GR G
Sbjct: 413 ERDETMERFRRGEIWVLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGRTGRAGKS 472
Query: 339 GTAITLYSPSDDSSIREI 356
G A+T ++ +D I+ I
Sbjct: 473 GHAVTYFTDADMKYIKSI 490
pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 119 bits (295), Expect = 5e-26
Identities = 65/201 (32%), Positives = 109/201 (53%), Gaps = 3/201 (1%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
KF D + + + + FE+P+ +Q++ I ++ G D++ ++++G+GKT TF + Q
Sbjct: 22 KFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 62 KIDTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQ 121
+IDT + QA++ AP+RELA QI K D ++V +GGT + L +Q
Sbjct: 82 RIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD-IKVHACIGGTSFVEDAEGLRDAQ 140
Query: 122 PHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKRVQMLV 181
+V+GTPGR+ D I+ F++DEAD L GF + QI + Q+++
Sbjct: 141 --IVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVL 198
Query: 182 FSATIPQKLQPFLKKYLHNPV 202
SAT+P + K++ NPV
Sbjct: 199 LSATMPNDVLEVTTKFMRNPV 219
emb|CAA09213| (AJ010474) RNA helicase [Arabidopsis thaliana]
Length = 595
Score = 118 bits (293), Expect = 9e-26
Identities = 84/302 (27%), Positives = 146/302 (47%), Gaps = 22/302 (7%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F F + +++ FE T VQE +PI+L G+D++ ++KTG+GKT FLLP +
Sbjct: 294 RFDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIE 353
Query: 62 KI--------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQ 113
+ D+ + ++ P+RELA+Q A K + + V +GGT +
Sbjct: 354 AVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTE 413
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSN---ALIVHTANTFVVDEADMTLDMGFLADVDQIA 170
++++++ +++ TPGR+ D I++ A + V+DEAD LDMGF D+++I
Sbjct: 414 QRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERII 473
Query: 171 SSFGKRVQMLVFSATIPQKLQPFLKKYLHNP-----VMQKIANKTVISDTIENWLVSTKG 225
++ K+ Q +FSAT+P++++ L +Q+ + +T + +
Sbjct: 474 AAVPKQRQTFLFSATVPEEVRQICHVALKRDHEFINCVQEGSGET--HQKVTQMYMIASL 531
Query: 226 SSHNQLLLQLTK---ATN-PYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERK 281
H LL L K A N Y +IF T + L+ L V +IH P R
Sbjct: 532 DRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRT 591
Query: 282 RI 283
R+
Sbjct: 592 RV 593
sp|P75335|Y308_MYCPN PROBABLE RNA HELICASE MG308 HOMOLOG >gi|2146079|pir||S73724
ATP-dependent RNA helicase deaD - Mycoplasma pneumoniae
(SGC3) (ATCC 29342) >gi|1674080 (AE000038) Mycoplasma
pneumoniae, ATP-dependent RNA helicase; similar to
Swiss-Prot Accession Number P21507, from E. coli
[Mycoplasma pneumoniae]
Length = 409
Score = 112 bits (277), Expect = 7e-24
Identities = 86/351 (24%), Positives = 156/351 (43%), Gaps = 25/351 (7%)
Query: 14 QTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQKIDTDLDEVQAV 73
QT ++F + K+ P +++VG ++TGSGKT +LLP +ID L++ QAV
Sbjct: 12 QTKHIVEFSSIQQAVFKVWP----RQNVVGIAETGSGKTFAYLLPALNQIDVTLNKPQAV 67
Query: 74 ITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIGTPGRIH 133
+ P++EL QI L + N + + ++ + +S H+++
Sbjct: 68 VFVPTKELKWQI-------------LTILNDIKASFTGLKVSENFNSNAHLIVS------ 108
Query: 134 DLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGK-RVQMLVFSATIPQKLQP 192
LI + ++ T V DE DM L+ A+ F K + FSAT+ +
Sbjct: 109 -LIGKDIILHETIKYVVFDEVDMFLEDSSQAEWINCVQLFQKHKPHFGFFSATLFNEQLQ 167
Query: 193 FLKKYLHNPVMQKIANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFANTKG 252
++K + + + ++++L++ G LL L + ++F +
Sbjct: 168 QIRKQVAPLTVVNQKKRAWKHSLVKHFLLNLNGQEPFAGLLALLNYHHNEQVLVFCSNAK 227
Query: 253 RVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSH 312
+ + L N L +HG + P ERK I S N + +V +D+ ARGID+ S
Sbjct: 228 SLKQLTSLLAHNQLSFKSLHGQLTPNERKHIFTSAANNTVRVLVVSDLLARGIDLPHFSV 287
Query: 313 IINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTF 363
+I+ ++P +F++HR GR R G + P + + + G+ F
Sbjct: 288 VISWDLPLVDSFYIHRSGRVARFNSWGNSYVFDLPHNQHKLTKFAHKGILF 338
dbj|BAA11901.1| (D83386) UORF6 [Shewanella violacea]
Length = 206
Score = 112 bits (277), Expect = 7e-24
Identities = 65/206 (31%), Positives = 110/206 (52%), Gaps = 6/206 (2%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
M FT I + + + +E P+ +Q + IP VL G+D++ ++TG+GKT F LP+
Sbjct: 1 MSFTSLGLSAPILKAVASKGYETPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLL 60
Query: 61 QKID----TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKK 116
+ + +V+A++ P+RELA Q+ ++ + + K L+ + GG QI K
Sbjct: 61 ELLSRGNRAQAKKVRALVLTPTRELAAQVAESVETYGKYLP-LKSAVIFGGVGIGPQISK 119
Query: 117 LESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEADMTLDMGFLADVDQIASSFGKR 176
L +++ TPGR+ DL A+ + ++DEAD LDMGF+ D+ +I +
Sbjct: 120 LGKGVD-ILVATPGRLLDLYNQGAVNFNQLEVLILDEADRMLDMGFIHDIKKILRVLPAK 178
Query: 177 VQMLVFSATIPQKLQPFLKKYLHNPV 202
Q L+FSAT ++ K ++NPV
Sbjct: 179 RQNLMFSATFSDDIRKLAKGLVNNPV 204
emb|CAA20842.1| (AL031545) DEAD box ATP-dependent RNA helicase [Schizosaccharomyces
pombe]
Length = 604
Score = 109 bits (270), Expect = 5e-23
Identities = 113/463 (24%), Positives = 194/463 (41%), Gaps = 90/463 (19%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLS----------GRDLVGESKTGSG 50
++F+ N + + L+ + VQ ++P++L G D+ + TGSG
Sbjct: 126 VEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSG 185
Query: 51 KTHTFLLPIFQKID-TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTD 109
KT ++++PI Q + + ++ V+ P+REL Q+ K E+ L+V + G
Sbjct: 186 KTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTF-EYYMSGAGLQVCAWTGQKS 244
Query: 110 KARQIKKLESSQPH----VVIGTPGRIHDLIKSN-ALIVHTANTFVVDEADMTLDMGF-- 162
+ +L + V++ TPGR+ D I+++ + + V+DEAD LD F
Sbjct: 245 LRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQD 304
Query: 163 --------------------LADVDQ-IASSF------------GKRVQMLVFSATIPQK 189
+ D+DQ I+ +F +Q LVFSAT+ +
Sbjct: 305 WVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRD 364
Query: 190 LQPFLKKYLHNPVMQKIANKTVISD----------------TIENWLVSTKGSSHNQLLL 233
LHNP + + NK + D T++ + VS S LL
Sbjct: 365 PSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHVSVS-SEKPILLY 423
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLT----------SNGLKVAKIHGDVPPRERKRI 283
L + N + F + +H L S GL + + D ERK+I
Sbjct: 424 HLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRD----ERKKI 479
Query: 284 MNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAIT 343
++ D +V +D+ ARGID+ ++IN + P + +VHR+GR+ R G +G A T
Sbjct: 480 ISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWT 539
Query: 344 LYSPSDDSSIRE-IEKMGVTFQPKAIK------DGEIVDSYDR 379
L + + ++++ T K IK E V +YD+
Sbjct: 540 LVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDK 582
dbj|BAA13920| (D89259) similar to Saccharomyces cerevisiae putative ATP-dependent
RNA helicase DBP73D, SWISS-PROT Accession Number P26802
[Schizosaccharomyces pombe]
Length = 490
Score = 101 bits (250), Expect = 1e-20
Identities = 111/463 (23%), Positives = 190/463 (40%), Gaps = 90/463 (19%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLS----------GRDLVGESKTGSG 50
++F+ N + + L+ + VQ ++P++L G D+ + TGSG
Sbjct: 12 VEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSG 71
Query: 51 KTHTFLLPIFQKID-TDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTD 109
KT ++++PI Q + + ++ V+ P+REL Q+ K E+ L+V + G
Sbjct: 72 KTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAKTF-EYYMSGAGLQVCAWTGQKS 130
Query: 110 KARQIKKLESSQPH----VVIGTPGRIHDLIKSN-ALIVHTANTFVVDEADMTLDMGF-- 162
+ +L + V++ TPGR+ D I+++ + + V+DEAD LD F
Sbjct: 131 LRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQD 190
Query: 163 --------------------LADVDQ-IASSF------------GKRVQMLVFSATIPQK 189
+ D+DQ I+ +F +Q LVFSAT+ +
Sbjct: 191 WVDTVMMEISHPKCLQNKSNILDLDQNISPTFLPDIDTLLPYRLPSPLQKLVFSATLTRD 250
Query: 190 LQPFLKKYLHNPVMQKIANKTVISD----------------TIENWLVSTKGSSHNQLLL 233
LHNP + + NK + D T++ + VS S LL
Sbjct: 251 PSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVLSVPPTLQEYHVSVS-SEKPILLY 309
Query: 234 QLTKATNPYMAMIFANTKGRVDDIHHFLT----------SNGLKVAKIHGDVPPRERKRI 283
L + N + F + +H L S GL + + D ERK+I
Sbjct: 310 HLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRD----ERKKI 365
Query: 284 MNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAIT 343
++ D +V +D+ ARGI ++IN + P + +VHR+G + R G +G A T
Sbjct: 366 ISWFATGDLNLLVCSDLMARGIHFSNTQNVINYDPPFSVRSYVHRIGPTARAGREGFAWT 425
Query: 344 LYSPSDDSSIRE-IEKMGVTFQPKAIK------DGEIVDSYDR 379
L + + ++++ T K IK E V YD+
Sbjct: 426 LVQSHEGHHFSKLVKQLKKTLPIKRIKIEFSHISEEFVFPYDK 468
gi|2734866 (U72484) RNA helicase [Fugu rubripes]
Length = 267
Score = 93.6 bits (229), Expect = 3e-18
Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 9/234 (3%)
Query: 165 DVDQIASSF----GKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENW- 219
D D++ +F K Q ++F+AT+P ++ + YL P + I + + +E
Sbjct: 31 DPDKMMMNFESGKNKYRQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKV 90
Query: 220 LVSTKGSSHNQLLLQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRE 279
L+ ++G +LL L+ P + +IF N K D + L G +HG +
Sbjct: 91 LLMSEGEKRKKLLEVLSHGFEPPI-IIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQ 149
Query: 280 RKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQG 339
R+ ++++K +VATD+A RGIDI VS ++N ++ K++ ++HR+GR+GR G G
Sbjct: 150 REFALSNLKAGAKDILVATDVAGRGIDIHDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSG 209
Query: 340 TAITLYSPSDDSSIREIEKMGVTFQPKAIKDGEIVDSYDRDRREKR--TKKQDE 391
A+T + D + ++ K + P + E+ + D + TKK+ E
Sbjct: 210 VALTFLTKEDSAVFYDL-KQAILESPVSTCPPELTNHPDAQHKPGTILTKKRRE 262
dbj|BAA20963| (D00852) ORF similar to initiation factor 4A family [Pseudomonas
fluorescens]
Length = 233
Score = 82.3 bits (200), Expect = 7e-15
Identities = 45/135 (33%), Positives = 76/135 (55%), Gaps = 8/135 (5%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F DF + ++++ F T +Q +++ L+G+D +G ++TG+GKT FL+ I
Sbjct: 100 RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 159
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
++ + + E +A+I AP+REL QI K A + TK L V FVGG D +Q+
Sbjct: 160 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTG-LNVMTFVGGMDFDKQL 218
Query: 115 KKLESSQPHVVIGTP 129
K LE+ +++ TP
Sbjct: 219 KHLEARHCDILVATP 233
pir||JQ0886 hypothetical protein (estA 3' region) - Pseudomonas fluorescens
(fragment)
Length = 232
Score = 79.6 bits (193), Expect = 5e-14
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 8/134 (5%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIFQ 61
+F DF + ++++ F T +Q +++ L+G+D +G ++TG+GKT FL+ I
Sbjct: 100 RFHDFKLAPELMHAIQDLGFPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIIT 159
Query: 62 KI-------DTDLDEVQAVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQI 114
++ + + E +A+I AP+REL QI K A + TK L V FVGG D +Q+
Sbjct: 160 QLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAADLTKYTG-LNVMTFVGGMDFDKQL 218
Query: 115 KKLESSQPHVVIGT 128
K LE+ +++ T
Sbjct: 219 KHLEARHCDILVAT 232
pir||E64496 eIF-4A family probable ATP-dependent RNA helicase homolog -
Methanococcus jannaschii >gi|1592195 (U67597)
ATP-dependent RNA helicase, eIF-4A family, putative
[Methanococcus jannaschii]
Length = 684
Score = 78.8 bits (191), Expect = 8e-14
Identities = 89/356 (25%), Positives = 162/356 (45%), Gaps = 30/356 (8%)
Query: 2 KFTDFNFKDY-INQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+F++F FK+ IN+ ++ + F+ Q K + + + +D+V + T SGK+ F L IF
Sbjct: 24 RFSNFKFKNKEINELIDALGFKLYLH-QVKALKYLYNKKDVVVTTSTASGKSEIFRLAIF 82
Query: 61 QKIDTDLDEVQAVITAPSRELATQIY-KAAQE---FTKV-NDKLRVSNFVG--GTDKARQ 113
++ D+ + ++ P+R L Y K + E F K+ N +++ G G +K R+
Sbjct: 83 DNFLSNPDD-RYLLIYPTRALINNQYEKFSMENELFYKITNKRVKAEILTGDVGLEKRRE 141
Query: 114 IKKLESSQPHVVIGTPGRIHDLIKSN----ALIVHTANTFVVDEADM------TLDMGFL 163
I K +P+V+ TP +H I N ++ VVDE + T +
Sbjct: 142 ILK---DKPNVLFTTPDMLHYQILKNHNNYLWLLKNLKLLVVDELHVYRGVFGTNMVYVF 198
Query: 164 ADVDQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQKIANKTVISDTIENWLVST 223
+ ++ +Q+L SAT+ + K L N + + S ++
Sbjct: 199 KRLLKLLKRLNNNLQILCLSATLKNPKE--FVKLLFNRDFEVVDKSYNPSSRKYLAILEP 256
Query: 224 KGSSHNQLLLQLTK--ATNPYMAMIFANTKGRVDDIHHFLTSNGL--KVAKIHGDVPPRE 279
K + QLL +L + N ++F +T+ + + FL ++ + K++ G +P
Sbjct: 257 KNLDNKQLLRRLIENLVDNNIKTLVFFDTRKETEKLMRFLLNSKVFYKLSTYKGTLPKYV 316
Query: 280 RKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTF-FVHRVGRSGR 334
R+ I KN + ++ T+ GIDI + +IN IP D F + R GR+GR
Sbjct: 317 REEIEEKFKNGEILALLTTNALELGIDIGDLDAVINYGIPPDGIFSLIQRFGRAGR 372
ref|NP_012949.1|DBP7| putative RNA helicase; Dbp7p >gi|549597|sp|P36120|DBP7_YEAST
ATP-DEPENDENT RNA HELICASE DBP7 >gi|539330|pir||S38093
probable purine nucleotide-binding protein YKR024c -
yeast (Saccharomyces cerevisiae)
>gi|486449|emb|CAA82096| (Z28249) ORF YKR024c
[Saccharomyces cerevisiae]
Length = 742
Score = 78.4 bits (190), Expect = 1e-13
Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 14/166 (8%)
Query: 17 ENIKFEKPTEVQEKLIPIVLSG---RDLVGESKTGSGKTHTFLLPIFQKI---DTDLDEV 70
+ ++ +KPT +Q++ IP ++ D ++TGSGKT ++LLPI I DT +D
Sbjct: 160 QKMRIKKPTSIQKQAIPQIIGNAGKNDFFIHAQTGSGKTLSYLLPIISTILNMDTHVDRT 219
Query: 71 Q---AVITAPSRELATQIYKAAQEFTKVNDKLRVSNFVGGTDKARQIKKLESSQPHVVIG 127
A++ AP+RELA+QIY L +GG K + +L + +IG
Sbjct: 220 SGAFALVIAPTRELASQIYHVCSTLVSCCHYLVPCLLIGGERKKSEKARLRKG-CNFIIG 278
Query: 128 TPGRIHDLIKSNALI----VHTANTFVVDEADMTLDMGFLADVDQI 169
TPGR+ D +++ +I + V+DE D +++GF + +I
Sbjct: 279 TPGRVLDHLQNTKVIKEQLSQSLRYIVLDEGDKLMELGFDETISEI 324
Score = 43.4 bits (100), Expect = 0.004
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 268 VAKIHGDVPPRERKRIM------NSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKD 321
+ K+HG + + R + N + + TD+A+RG+D+ V +I + P
Sbjct: 484 IYKLHGSLSQQMRTSTLQHFARDNEATKGKHLIMFCTDVASRGLDLPHVGSVIELDPPFA 543
Query: 322 LTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIR-----------EIEKMGVTFQPKAIKD 370
+ +HRVGR+ R G +G ++ P ++ E+ K A KD
Sbjct: 544 VEDHLHRVGRTARAGEKGESLLFLLPGEEEKYMDYIQPYHPMGWELLKFDKEILMPAFKD 603
Query: 371 GEIVDSYDRDRREKRTKKQDEISTK 395
+ + R+++++ K ++ K
Sbjct: 604 VNVNRNDKFIRKDEKSSKNKDVGDK 628
dbj|BAA87175.1| (AB027871) Suppressor of uncontrolled mitosis [Schizosaccharomyces
pombe]
Length = 225
Score = 77.3 bits (187), Expect = 2e-13
Identities = 57/172 (33%), Positives = 87/172 (50%), Gaps = 20/172 (11%)
Query: 2 KFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPI-- 59
+FT ++ Q ++ + +PT VQ+ IPIV SGRDL+ ++TGSGKT FL PI
Sbjct: 56 EFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILS 115
Query: 60 --FQK----IDTDLDE----------VQAVITAPSRELATQIYKAAQEFTKVNDKLRVSN 103
F K + D D +I AP+REL QI++ +++F +R
Sbjct: 116 LAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFC-YRSWVRPCA 174
Query: 104 FVGGTDKARQIKKLESSQPHVVIGTPGRIHDLIKSNALIVHTANTFVVDEAD 155
GG D QI++++ ++ TPGR+ DLI + + V+DEAD
Sbjct: 175 VYGGADIRAQIRQIDQG-CDLLSATPGRLVDLIDRGRISLANIKFLVLDEAD 225
emb|CAB70733.1| (AL137423) hypothetical protein [Homo sapiens]
Length = 399
Score = 75.7 bits (183), Expect = 7e-13
Identities = 41/124 (33%), Positives = 69/124 (55%), Gaps = 6/124 (4%)
Query: 244 AMIFANTKGRVDDI--HHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIA 301
A+IF TK V ++ + + N +HGD+ +R+ + + ++ +VAT++A
Sbjct: 54 AIIFCETKKNVTEMAMNPHIKQNA---QCLHGDIAQSQREITLKGFREGSFKVLVATNVA 110
Query: 302 ARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMG 360
ARG+DI V +I P+D+ ++HR GR+GR G G I Y P + +R +E K G
Sbjct: 111 ARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAG 170
Query: 361 VTFQ 364
+TF+
Sbjct: 171 ITFK 174
emb|CAA09204| (AJ010465) RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 74.9 bits (181), Expect = 1e-12
Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 58/308 (18%)
Query: 124 VVIGTPGRIHDLIKS---NALIVHTANTFVVDEADMTLDMGFLADV-------------- 166
+V+ TPGR+ +L+ + + + +H+ + FV+DEAD ++ G ++
Sbjct: 2 IVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILDLLPVTDKPN 61
Query: 167 ----------DQIASSFGKRVQMLVFSATIPQKLQPFLKKYLHNPVMQK----------- 205
D + + K+ Q VFSATI F KK K
Sbjct: 62 EGKTQTVKSNDTVLNVPKKKRQTFVFSATIALS-SDFRKKLKRGSSKSKQSSSGEVNSIE 120
Query: 206 ----------------IANKTVISDTIENWLVSTKGSSHNQLLLQLTKATNPYMAMIFAN 249
+ ++++ IE + + + L + ++F
Sbjct: 121 VLSERAGMRDNVAIIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCT 180
Query: 250 TKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEG 309
+ + I L GL V + ++ R R + ++ + + ++ATD+ ARGIDI+
Sbjct: 181 SVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGIDIKN 240
Query: 310 VSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIEKMGVTFQPKAIK 369
V II+ ++P +VHR GR+ R G +I L P++ S + K +F +++K
Sbjct: 241 VRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNETSKFYTLCK---SFSMESVK 297
Query: 370 DGEIVDSY 377
+ +SY
Sbjct: 298 IFPLDNSY 305
emb|CAA09210| (AJ010471) RNA helicase [Arabidopsis thaliana]
>gi|4249378|gb|AAD14475| (AC005966) Identical to
gb|AJ010471 mRNA for DEAD box RNA helicase (RH22) from
Arabidopsis thaliana. EST gb|Y11191 comes from this
gene. [Arabidopsis thaliana]
Length = 505
Score = 73.0 bits (176), Expect = 5e-12
Identities = 46/149 (30%), Positives = 74/149 (48%), Gaps = 6/149 (4%)
Query: 217 ENWLVSTKGSSHNQLL--LQLTKATNPYMAMIFANTKGRVDDIHHFLTSNGLKVAKIHGD 274
+ W+ T S + L+ ++ TN M+FANT V+ + L ++ + H +
Sbjct: 322 QKWVEVTVDSQVDALIEAVKNNNNTNTERTMVFANTVEAVEAVADILEKASIQCYRYHKN 381
Query: 275 VPPRERKRIMNSIKNLDYQYVVATDIAARGIDIEGVSHIINDEIPKDLTFFVHRVGRSGR 334
ER I+ + +V TD AARG+D+ VSH+I + F+HR+GR+ R
Sbjct: 382 HKLDERANILADFRETGGVFV-CTDAAARGVDVPNVSHVIQADFASSAVDFLHRIGRTAR 440
Query: 335 NGLQGTAITLYSPSDD---SSIREIEKMG 360
G GT +LY+ ++ +IRE KMG
Sbjct: 441 AGQYGTVTSLYTEANRDLVEAIREAVKMG 469
Score = 53.5 bits (126), Expect = 3e-06
Identities = 48/178 (26%), Positives = 80/178 (43%), Gaps = 27/178 (15%)
Query: 1 MKFTDFNFKDYINQTLENIKFEKPTEVQEKLIPIVLSGRDLVGESKTGSGKTHTFLLPIF 60
+ + D ++ L + F++P+ Q IP +LSG+D++ ++TGSGKTH +L PI
Sbjct: 4 VSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPII 63
Query: 61 QKI-DTDLD-EVQ------------AVITAPSRELATQIYKAAQEFTKV--NDKLRVSNF 104
++ +T LD EV ++I P+ L Q+ + N LRV
Sbjct: 64 DQLTNTALDSEVTNREERPFPLKNISLILCPNVMLCEQVVRMVNGLVDEDGNPLLRVEAV 123
Query: 105 VGGTDKARQIKKLESSQPHVVIGTPGRIHDLI--KSNALI--VHTANTFVVDEADMTL 158
G ++ P +++ TP + + I K N + + V DEADM L
Sbjct: 124 CGSQGWPDRL-------PDIIVSTPAALLNNIEPKRNRRLEFLRCVKYVVFDEADMLL 174
emb|CAA09198| (AJ010459) RNA helicase [Arabidopsis thaliana]
Length = 145
Score = 71.8 bits (173), Expect = 1e-11
Identities = 40/123 (32%), Positives = 67/123 (53%), Gaps = 1/123 (0%)
Query: 244 AMIFANTKGRVDDIHHFLTSNGLKVAKIHGDVPPRERKRIMNSIKNLDYQYVVATDIAAR 303
++IF N+ RV+ + +T G IH + R R+ + +N + +V TD+ R
Sbjct: 11 SIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHDFRNGACRNLVCTDLFTR 70
Query: 304 GIDIEGVSHIINDEIPKDLTFFVHRVGRSGRNGLQGTAITLYSPSDDSSIREIE-KMGVT 362
GIDI+ V+ +IN + P+ ++HRVGRSGR G G A+ L + D + + E ++G
Sbjct: 71 GIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTE 130
Query: 363 FQP 365
+P
Sbjct: 131 IKP 133
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.135 0.375
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107000615
Number of Sequences: 457798
Number of extensions: 4256477
Number of successful extensions: 13676
Number of sequences better than 1.0e-02: 485
Number of HSP's better than 0.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 12119
Number of HSP's gapped (non-prelim): 577
length of query: 446
length of database: 140,871,481
effective HSP length: 59
effective length of query: 387
effective length of database: 113,861,399
effective search space: 44064361413
effective search space used: 44064361413
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 97 (42.2 bits)