Score E
Sequences producing significant alignments: (bits) Value
sp|P12040|PUR3_BACSU PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSF... 159 1e-38
gb|AAF08602.1|U70775_1 (U70775) phosphoribosylglycinamide f... 131 5e-30
gb|AAD36323.1|AE001780_7 (AE001780) phosphoribosylglycinami... 121 5e-27
sp|P00967|PUR2_DROME TRIFUNCTIONAL PURINE BIOSYNTHETIC PROT... 113 1e-24
sp|P43846|PUR3_HAEIN PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSF... 110 9e-24
sp|P16340|PUR2_DROPS TRIFUNCTIONAL PURINE BIOSYNTHETIC PROT... 110 9e-24
gi|2983389 (AE000710) phosphoribosylglycinamide formyltrans... 106 2e-22
ref|NP_000810.1|| phosphoribosylglycinamide formyltransfera... 104 7e-22
gi|387019 (M32082) phosphoribosylglycinamide formyltransfer... 104 7e-22
ref|NP_034386.1|| phosphoribosylglycinamide formyltransfera... 103 1e-21
pir||I67805 purine synthesis multifunctional protein - mous... 103 1e-21
sp|Q26255|PUR2_CHITE TRIFUNCTIONAL PURINE BIOSYNTHETIC PROT... 103 1e-21
emb|CAB72670.1| (AL139074) phosphoribosylglycinamide formyl... 102 1e-21
sp|P21872|PUR2_CHICK TRIFUNCTIONAL PURINE BIOSYNTHETIC PROT... 102 1e-21
pdb|2GAR| A Ph-Dependent Stablization Of An Active Site L... 102 3e-21
pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From... 100 1e-20
pdb|1CDD|A Escherichia coli >gi|809281|pdb|1CDD|B Escherich... 100 1e-20
sp|P08179|PUR3_ECOLI PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSF... 100 1e-20
gi|1562542 (U68765) 5'-phosphoribosylglycinamide transformy... 97 8e-20
dbj|BAA10312| (D64001) phosphoribosylglycinamide formyltran... 95 4e-19
gb|AAD21688.1| (AC004793) This gene is a member of the form... 88 4e-17
gi|1055176 (U40060) coded for by C. elegans cDNA yk45e7.3; ... 87 7e-17
gb|AAC96120.1| (AF083221) glycinamide ribonucleotide transf... 87 9e-17
sp|P52422|PUR3_ARATH PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSF... 87 9e-17
gb|AAF05726.1|AF191543_1 (AF191543) PurN [Mycobacterium avi... 87 1e-16
sp|P52423|PUR3_VIGUN PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSF... 87 1e-16
gi|2984098 (AE000757) formyltetrahydrofolate deformylase [A... 82 3e-15
emb|CAB36670.1| (AL035500) putative phosphoribosylglycinami... 81 7e-15
emb|CAB46526.1| (AJ243305) 5'-phosphoribosylglycinamide for... 80 1e-14
emb|CAB01994| (Z79700) purN [Mycobacterium tuberculosis] 80 1e-14
dbj|BAA89443.1| (AB003159) 5'-phosphoribosylglycinamide for... 78 6e-14
ref|NP_010696.1|ADE8| glycinamide ribotide transformylase; ... 76 2e-13
gb|AAD46927.1|AF171879_1 (AF171879) glycinamide ribonucleot... 75 4e-13
emb|CAB42069.1| (AL049755) glycinamide ribonucleotide trans... 72 3e-12
emb|CAA05590| (AJ002571) YkkE [Bacillus subtilis] >gi|26336... 67 9e-11
gb|AAD08476.1| (AE000644) formyltetrahydrofolate hydrolase ... 66 2e-10
sp|Q46339|PURU_CORSP FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 66 3e-10
emb|CAB73055.1| (AL139076) formyltetrahydrofolate deformyla... 63 1e-09
gi|4155950 (AE001556) FORMYLTETRAHYDROFOLATE HYDROLASE [Hel... 63 1e-09
gb|AAF10164.1|AE001917_1 (AE001917) formyltetrahydrofolate ... 62 2e-09
pir||PN0606 phosphoribosylglycinamide formyltransferase (EC... 62 4e-09
sp|Q03432|PURU_HAEIN FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 61 5e-09
sp|Q55135|PURU_SYNY3 FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 61 9e-09
sp|P38480|PURU_SHIFL FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 59 3e-08
gb|AAF11574.1|AE002039_4 (AE002039) phosphoribosylglycinami... 58 4e-08
emb|CAB10517.1| (Z97343) formyltransferase purU homolog [Ar... 58 6e-08
gi|402694 (M64675) tgs [Escherichia coli] 57 8e-08
sp|P37051|PURU_ECOLI FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 57 8e-08
emb|CAB39401.1| (AJ011316) purU protein [Methylobacterium s... 55 3e-07
emb|CAA65608| (X96865) phosphoribosylglycinamide formyltran... 55 3e-07
gi|3150048 (AF016634) phosphoribosylglycinamide formyltrans... 54 9e-07
sp|Q50453|PURU_MYCTU FORMYLTETRAHYDROFOLATE DEFORMYLASE (FO... 52 3e-06
dbj|BAA87143.1| (AB027839) Hypothetical protein [Schizosacc... 51 6e-06
sp|Q9WYZ8|FMT_THEMA METHIONYL-TRNA FORMYLTRANSFERASE >gi|49... 50 1e-05
sp|P43523|FMT_THETH METHIONYL-TRNA FORMYLTRANSFERASE >gi|10... 50 2e-05
sp|P94463|FMT_BACSU METHIONYL-TRNA FORMYLTRANSFERASE >gi|23... 49 3e-05
emb|CAA71350| (Y10304) Met-tRNAi formyl transferase [Bacill... 49 3e-05
sp|O67890|FMT_AQUAE METHIONYL-TRNA FORMYLTRANSFERASE >gi|29... 48 5e-05
sp|O83737|FMT_TREPA METHIONYL-TRNA FORMYLTRANSFERASE >gi|33... 46 1e-04
emb|CAA72163| (Y11304) PurU-like protein [Rhodobacter capsu... 45 4e-04
emb|CAA07644.1| (AJ007747) putative formyl transferase [Bor... 45 6e-04
sp|P50932|FMT_RICPR METHIONYL-TRNA FORMYLTRANSFERASE >gi|38... 44 7e-04
pir||A57363 methionyl-tRNA formyltransferase (EC 2.1.2.9) -... 44 7e-04
gi|4071216 (AF047478) formyl transferase; WbkC [Brucella me... 44 0.001
sp|P56461|FMT_HELPY METHIONYL-TRNA FORMYLTRANSFERASE >gi|23... 42 0.003
gb|AAF28330.1|AF207908_1 (AF207908) formyltetrahydrofolate ... 41 0.005
gb|AAF11976.1|AE002073_6 (AE002073) methionyl-tRNA formyltr... 41 0.005
emb|CAB53329.1| (AL109974) putative formyltransferase [Stre... 41 0.005
emb|CAB72582.1| (AL139074) methionyl-tRNA formyltransferase... 41 0.006
sp|P12040|PUR3_BACSU PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|66484|pir||XYBSGF
phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
- Bacillus subtilis >gi|143372 (J02732) phosphoribosyl
glycinamide formyltransferase (PUR-N) [Bacillus
subtilis] >gi|2632965|emb|CAB12471| (Z99107)
phosphoribosylglycinamide formyltransferase [Bacillus
subtilis]
Length = 195
Score = 159 bits (398), Expect = 1e-38
Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 2 KFAVFASGNGSNFQTLAEQFPDQV-----KFVFSDHHDAYVLERAERLGVAKASLELKEF 56
KFAVFASGNGSNF+ + + ++ + D A V+ERAER + + E K +
Sbjct: 3 KFAVFASGNGSNFEAIVTRLKEENWDASRALLVCDKPQAKVIERAERFHIPSFAFEPKSY 62
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
+K +E+A++E L+ E++LI LAGYM++IG T+L Y GKIIN+HPS LP F G
Sbjct: 63 ENKAAFEQAIIEQLRLHEVELIALAGYMRLIGDTLLQAYGGKIINIHPSLLPAFPGIDAV 122
Query: 117 IEESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVV 174
+ K GI++HYVDEG+DTG +IAQ I + H+ LE E+ +H+ EHK YP V+
Sbjct: 123 GQAFRAGVKVAGITVHYVDEGMDTGPIIAQKAIEIDEHDTLETIEQRIHKLEHKWYPSVI 182
Query: 175 RQII 178
+Q++
Sbjct: 183 KQLL 186
gb|AAF08602.1|U70775_1 (U70775) phosphoribosylglycinamide formyltransferase homolog
[Streptococcus pyogenes]
Length = 151
Score = 131 bits (325), Expect = 5e-30
Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 4/147 (2%)
Query: 31 DHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGAT 90
DH DAYVLERA+ L + + ELKEF +KV YE+A+V++L EIDL+ LAGYMKI+G T
Sbjct: 1 DHRDAYVLERAQNLAIPSFAFELKEFENKVAYEQAIVDLLDKHEIDLVCLAGYMKIVGET 60
Query: 91 VLSKYKGKIINVHPSYLPDFAGSPHAIEESHEA-KKGLGISIHYVDEGVDTGELIAQISL 149
+L +G LP+F G+ H IE++ EA G++IH+VD GVDTG++I Q+ +
Sbjct: 61 LLLAMRGVSSIFTQPTLPEFPGA-HGIEDAWEAGVDQSGVTIHWVDSGVDTGQVIQQVRV 119
Query: 150 AYHED--LEVYERSVHEAEHKLYPEVV 174
D LE +E +HE E++LYP V+
Sbjct: 120 PRLADDSLESFETRIHETEYQLYPAVL 146
gb|AAD36323.1|AE001780_7 (AE001780) phosphoribosylglycinamide formyltransferase [Thermotoga
maritima]
Length = 205
Score = 121 bits (300), Expect = 5e-27
Identities = 68/185 (36%), Positives = 116/185 (61%), Gaps = 17/185 (9%)
Query: 2 KFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
+ V ASGNGSNF+ + + +++ + D + Y +ERA++L + LE
Sbjct: 12 RIVVLASGNGSNFEAIVNAARSGELSAEIQMLLVDRN-CYAIERAKKLQIPWERLEKP-- 68
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
+ ++L + L++ DL++LAG+M+I+ A ++ ++K KI+N+HPS LP F G+ HA
Sbjct: 69 -----WAESLKKRLEELNPDLVVLAGFMRILPAEIVERWKWKIVNIHPSLLPAFPGT-HA 122
Query: 117 IEESHE-AKKGLGISIHYVDEGVDTGELIAQISLAYHED--LEVYERSVHEAEHKLYPEV 173
IE+++E K GI+IH+VDEGVDTG +I Q ++ +D LE E +H+ EH+ YP V
Sbjct: 123 IEKAYEYGVKVTGITIHFVDEGVDTGPIIFQKAVEIKKDWSLERLEEEIHKIEHRYYPLV 182
Query: 174 VRQII 178
+++++
Sbjct: 183 IQKVL 187
sp|P00967|PUR2_DROME TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDINE...
>gi|68649|pir||AJFFPM purine synthesis multifunctional
protein - fruit fly (Drosophila melanogaster) >gi|157482
(J02527) Gart polypeptide 4.7 kb transcript [Drosophila
melanogaster] >gi|295747|emb|CAA29612| (X06286)
GARS-AIRS-GART polypeptide [Drosophila melanogaster]
Length = 1353
Score = 113 bits (279), Expect = 1e-24
Identities = 62/187 (33%), Positives = 106/187 (56%), Gaps = 11/187 (5%)
Query: 2 KFAVFASGNGSNFQTLAEQFPDQ-------VKFVFSDHHDAYVLERAERLGVAKASLELK 54
+ AV SG GSN Q L + D V V S+ L+RA + G+ + K
Sbjct: 1155 RVAVLISGTGSNLQALIDATRDSAQGIHADVVLVISNKPGVLGLQRATQAGIPSLVISHK 1214
Query: 55 EFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSP 114
+F+S+ Y+ L LK +DLI LAG+M+++ A + +++G+++N+HPS LP + G
Sbjct: 1215 DFASREVYDAELTRNLKAARVDLICLAGFMRVLSAPFVREWRGRLVNIHPSLLPKYPGL- 1273
Query: 115 HAIEESHEA-KKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYP 171
H +++ EA +K G ++H+VDEGVDTG +I Q + + +D + + +H+AEH +P
Sbjct: 1274 HVQKQALEAGEKESGCTVHFVDEGVDTGAIIVQAAVPILPDDDEDSLTQRIHKAEHWAFP 1333
Query: 172 EVVRQII 178
+ ++
Sbjct: 1334 RALAMLV 1340
sp|P43846|PUR3_HAEIN PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|1075153|pir||F64122
phosphoribosylglycinamide formyltransferase (purN)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574266 (U32822) phosphoribosylglycinamide
formyltransferase (purN) [Haemophilus influenzae Rd]
Length = 212
Score = 110 bits (272), Expect = 9e-24
Identities = 60/181 (33%), Positives = 101/181 (55%), Gaps = 7/181 (3%)
Query: 2 KFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
K AV SG G+N QT+ + P ++ V S+ DAY L RA++ + +A K F
Sbjct: 3 KIAVLISGQGTNLQTIIDACHSGDIPAKIACVISNKADAYGLVRAKQAQIPQAVFLRKNF 62
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
S+ ++ + A+ + L+ +DLI+LAGYMKI+ ++ GKI+N+HPS LP +AG
Sbjct: 63 SNNLEMDDAIGDYLQSLAVDLIVLAGYMKILTPKFTQRFAGKILNIHPSLLPKYAGLNTY 122
Query: 117 IEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEVV 174
G ++H+V+E VD G ++ A++ + + +E E E E+++YP V+
Sbjct: 123 QRAIEAGDNEHGTTVHFVNEEVDGGAIVLQAKVPIFPEDSIEEVEARTREQEYQIYPLVI 182
Query: 175 R 175
+
Sbjct: 183 K 183
sp|P16340|PUR2_DROPS TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDINE...
>gi|68650|pir||AJFFPP purine synthesis multifunctional
protein - fruit fly (Drosophila pseudoobscura)
>gi|295787|emb|CAA29611| (X06285) GARS-AIRS-GART
polypeptide [Drosophila pseudoobscura]
Length = 1364
Score = 110 bits (272), Expect = 9e-24
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 11/183 (6%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAERLGVAKASLELK 54
+ AV SG GSN Q L + D ++ V S+ LERA + G+ + K
Sbjct: 1157 RVAVLISGKGSNLQALIDAIRDSAQGVYAEIVLVISNKAGVLGLERAAKAGIPSMVISHK 1216
Query: 55 EFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSP 114
+F S+ Y+ L LK ++ I LAG+M+I+ + +++G++IN+HPS LP F G
Sbjct: 1217 DFPSREVYDVELTRHLKTARVEFICLAGFMRILSVPFVREWRGRLINIHPSLLPKFPGL- 1275
Query: 115 HAIEESHEA-KKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYP 171
H +++ EA + G ++HYVDEGVDTG +I Q + + +D E + +H AEH +P
Sbjct: 1276 HVQKQALEAGETESGCTVHYVDEGVDTGAIIVQAAVPILPGDDEETLTQRIHYAEHWAFP 1335
Query: 172 EVV 174
+
Sbjct: 1336 RAL 1338
gi|2983389 (AE000710) phosphoribosylglycinamide formyltransferase [Aquifex
aeolicus]
Length = 216
Score = 106 bits (261), Expect = 2e-22
Identities = 60/183 (32%), Positives = 101/183 (54%), Gaps = 9/183 (4%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
+K V SG GSN Q + + ++ V SD+ AY +ER ++ V ++ KE
Sbjct: 2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKE 61
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F SK ++E+ + LK + ++L++LAG+M+I+ L + K+IN+HPS +P F G H
Sbjct: 62 FPSKKEFEERMALELKKKGVELVVLAGFMRILSHNFLKYFPNKVINIHPSLIPAFQGL-H 120
Query: 116 AIEESHE-AKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPE 172
A +++ E K G ++H VDE VD G +I Q + + +D + + EHK+ P+
Sbjct: 121 AQKQAVEFGVKFSGCTVHIVDESVDAGPVIVQAVVPVLPEDDENTLADRILKWEHKILPQ 180
Query: 173 VVR 175
V+
Sbjct: 181 TVQ 183
ref|NP_000810.1|| phosphoribosylglycinamide formyltransferase,
phosphoribosylglycinamide synthetase,
phosphoribosylaminoimidazole synthetase
>gi|131616|sp|P22102|PUR2_HUMAN TRIFUNCTIONAL PURINE
BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDINE...
>gi|68647|pir||AJHUPR purine synthesis multifunctional
protein - human >gi|31642|emb|CAA38119| (X54199)
glycinamide ribonucleotide synthetase-aminoimidazole
ribonucleotide synthetase-glycinamide ribonucleotide
transformylase [Homo sapiens]
Length = 1010
Score = 104 bits (256), Expect = 7e-22
Identities = 58/184 (31%), Positives = 105/184 (56%), Gaps = 9/184 (4%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
+ AV SG GSN Q L + + Q+ V S+ L++AER G+ + K +
Sbjct: 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 868
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
++V+++ A+ +L++ ID++ LAG+M+I+ + K+ GK++N+HPS LP F GS +A
Sbjct: 869 KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS-NA 927
Query: 117 IEESHEAKKGL-GISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEV 173
E++ E + G ++H+V E VD G++I Q + + + + V AEHK++P
Sbjct: 928 HEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAA 987
Query: 174 VRQI 177
++ +
Sbjct: 988 LQLV 991
gi|387019 (M32082) phosphoribosylglycinamide formyltransferase [Homo sapiens]
Length = 302
Score = 104 bits (256), Expect = 7e-22
Identities = 58/184 (31%), Positives = 105/184 (56%), Gaps = 9/184 (4%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
+ AV SG GSN Q L + + Q+ V S+ L++AER G+ + K +
Sbjct: 101 RVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLY 160
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
++V+++ A+ +L++ ID++ LAG+M+I+ + K+ GK++N+HPS LP F GS +A
Sbjct: 161 KNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGS-NA 219
Query: 117 IEESHEAKKGL-GISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEV 173
E++ E + G ++H+V E VD G++I Q + + + + V AEHK++P
Sbjct: 220 HEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAA 279
Query: 174 VRQI 177
++ +
Sbjct: 280 LQLV 283
ref|NP_034386.1|| phosphoribosylglycinamide formyltransferase
>gi|2500003|sp|Q64737|PUR2_MOUSE TRIFUNCTIONAL PURINE
BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDIN...
>gi|691792 (U20892) glycinamide ribonucleotide
synthetase-aminoimidazole ribonucleotide
synthetase-glycinamide ribonucleotide formyltransferase
[Mus musculus]
Length = 1010
Score = 103 bits (254), Expect = 1e-21
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
+ AV SG GSN Q L + D + V S+ L+RAER G+ + K
Sbjct: 809 RVAVLISGTGSNLQALIDSTRDPKSSSHIVLVISNKAAVAGLDRAERAGIPTRVINHKLS 868
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
++V+++ A+ +L++ +D++ LAG+M+I+ + K+ GK++N+HPS LP F GS +A
Sbjct: 869 KNRVEFDNAVDHVLEEFSVDIVCLAGFMRILSGPFVRKWDGKMLNIHPSLLPSFKGS-NA 927
Query: 117 IEESHEAKKGL-GISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEV 173
E+ EA + G ++H+V E VD G++I Q + + + + V AEHK++P
Sbjct: 928 HEQVLEAGVTITGCTVHFVAEDVDAGQIILQEAVPVRRGDTVATLSERVKVAEHKIFPAA 987
Query: 174 VRQI 177
++ +
Sbjct: 988 LQLV 991
pir||I67805 purine synthesis multifunctional protein - mouse >gi|403493
(U01024) glycinamide ribonucleotide sythetase (GARS),
aminoimidazole ribonucleotide synthetase (AIRS),
glycinamide ribonucleotide formyltransferase (GART) [Mus
musculus]
Length = 1010
Score = 103 bits (254), Expect = 1e-21
Identities = 59/184 (32%), Positives = 103/184 (55%), Gaps = 9/184 (4%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
+ AV SG GSN Q L + D + V S+ L+RAER G+ + K
Sbjct: 809 RVAVLISGTGSNLQALIDSTRDPKSSSHIVLVISNKAAVAGLDRAERAGIPTRVINHKLS 868
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
++V+++ A+ +L++ +D++ LAG+M+I+ + K+ GK++N+HPS LP F GS +A
Sbjct: 869 KNRVEFDNAVDHVLEEFSVDIVCLAGFMRILSGPFVRKWDGKMLNIHPSLLPSFKGS-NA 927
Query: 117 IEESHEAKKGL-GISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEV 173
E+ EA + G ++H+V E VD G++I Q + + + + V AEHK++P
Sbjct: 928 HEQVLEAGVTITGCTVHFVAEDVDAGQIILQEAVPVRRGDTVATLSERVKVAEHKIFPAA 987
Query: 174 VRQI 177
++ +
Sbjct: 988 LQLV 991
sp|Q26255|PUR2_CHITE TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDIN...
>gi|254730|bbs|112438 (S43653) glycinamide ribonucleotide
synthetase, aminoimidazole ribonucleotide synthetase,
glycinamide ribonucleotide transformylase {EC 6.3.4.13,
6.3.3.1, 2.1.2.2} [Chironomus tentans, Peptide, 1371 aa]
[Chironomus tentans]
Length = 1371
Score = 103 bits (254), Expect = 1e-21
Identities = 54/185 (29%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAERLGVAKASLELK 54
+ V SG+GSN Q L + ++ FV S+ + LERA + + + K
Sbjct: 1171 RVGVLISGSGSNLQALIDATKSTNMGMCSEIVFVLSNKAGIFGLERAAKANIPSTVISNK 1230
Query: 55 EFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSP 114
+++++ ++ AL L +++I LAG+M+I+ ++K+KGK++N+HPS LP + G
Sbjct: 1231 DYATREAFDVALHNELIKHNVEIICLAGFMRILTPCFVNKWKGKLLNIHPSLLPKYKGIT 1290
Query: 115 HAIEESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPE 172
+ G ++H+VDE VDTG +I Q + + ++ +E +H AEH +P+
Sbjct: 1291 AQKDALESGDNESGCTVHFVDENVDTGAIIVQEIVPIFENDTVESLTERIHVAEHIAFPK 1350
Query: 173 VVRQI 177
+R +
Sbjct: 1351 ALRLV 1355
emb|CAB72670.1| (AL139074) phosphoribosylglycinamide formyltransferase
[Campylobacter jejuni]
Length = 188
Score = 102 bits (253), Expect = 1e-21
Identities = 60/187 (32%), Positives = 106/187 (56%), Gaps = 13/187 (6%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPD--------QVKFVFSDHHDAYVLERAERLGVAKASLE 52
+K AV SGNGSN + + E+ ++ + DA+ ++RA++ G+ ++
Sbjct: 3 VKLAVLFSGNGSNLENILEKLHKKTIGENTYEIVLCLCNKKDAFGIQRAKKFGLNTVIID 62
Query: 53 LKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAG 112
K ++++ +++ LV+ +K+ +L +LAG+M+I+ K IN+HPS LP F G
Sbjct: 63 HKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFTKNIKA--INLHPSLLPLFKG 120
Query: 113 SPHAIEESHEA-KKGLGISIHYVDEGVDTGELIAQISLAYHE-DLEVYERSVHEAEHKLY 170
+ HAI+ES+E+ K G+S+H+V E +D G +IAQ + E +E +H EH++
Sbjct: 121 A-HAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKRNLSFEEFEEKIHSLEHEIL 179
Query: 171 PEVVRQI 177
P V +I
Sbjct: 180 PLSVIEI 186
sp|P21872|PUR2_CHICK TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3 [INCLUDES:
PHOSPHORIBOSYLAMINE--GLYCINE LIGASE (GARS) (GLYCINAMIDE
RIBONUCLEOTIDE SYNTHETASE) (PHOSPHORIBOSYLGLYCINAMIDE
SYNTHETASE); PHOSPHORIBOSYLFORMYLGLYCINAMIDINE...
>gi|68648|pir||AJCHPR purine synthesis multifunctional
protein - chicken >gi|62899|emb|CAA38120| (X54200)
glycinamide ribonucleotide synthetase-aminoimidazole
ribonucleotide synthetase-glycinamide ribonucleotide
transformylase [Gallus gallus]
Length = 1003
Score = 102 bits (253), Expect = 1e-21
Identities = 55/184 (29%), Positives = 98/184 (52%), Gaps = 7/184 (3%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPDQVKF-----VFSDHHDAYVLERAERLGVAKASLELKE 55
+K AV SG G+N + L F V S+ L +AER G+ ++ K+
Sbjct: 804 VKVAVLISGTGTNLEALINSTKKPTSFAEIVLVVSNKAGVEGLRKAERAGIPTRVIDHKQ 863
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
+ S+ +++ A+ +L++ ++LI LAG+M+I+ + K++GKI+N+HPS LP F G+
Sbjct: 864 YGSRTEFDSAVDRVLEEFSVELICLAGFMRILSGPFVKKWEGKILNIHPSLLPSFKGANA 923
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ G ++H+V E VD G +I Q + + + +E V EAEH+ +P
Sbjct: 924 HKLVLEAGVRVTGCTVHFVAEEVDAGAIIFQEAVPVKIGDTVETLSERVKEAEHRAFPAA 983
Query: 174 VRQI 177
++ +
Sbjct: 984 LQLV 987
pdb|2GAR| A Ph-Dependent Stablization Of An Active Site Loop Observed From
Low And High Ph Crystal Structures Of Mutant Monomeric
Glycinamide Ribonucleotide Transformylase
>gi|3660393|pdb|3GAR| A Ph-Dependent Stablization Of An
Active Site Loop Observed From Low And High Ph Crystal
Structures Of Mutant Monomeric Glycinamide
Ribonucleotide Transformylase
Length = 212
Score = 102 bits (251), Expect = 3e-21
Identities = 57/181 (31%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query: 1 MKFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
M V SGNGSN Q + + + V+ VFS+ DA+ LERA + G+A +L
Sbjct: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA 60
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F S+ Y++AL+ + D+++LAG+M+I+ +S Y G+++N+HPS LP + G
Sbjct: 61 FDSREAYDRALIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ + G S+H+V + +D G +I A++ + + + V EH +YP V
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 174 V 174
+
Sbjct: 181 I 181
pdb|1C3E|A Chain A, New Insights Into Inhibitor Design From The Crystal
Structure And Nmr Studies Of E. Coli Gar Transformylate
In Complex With Beta-Gar And
10-Formyl-5,8,10-Trideazafolic Acid.
>gi|6730125|pdb|1C3E|B Chain B, New Insights Into
Inhibitor Design From The Crystal Structure And Nmr
Studies Of E. Coli Gar Transformylate In Complex With
Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid.
Length = 209
Score = 100 bits (246), Expect = 1e-20
Identities = 56/181 (30%), Positives = 96/181 (52%), Gaps = 7/181 (3%)
Query: 1 MKFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
M V SGNGSN Q + + + V+ VFS+ DA+ LERA + G+A +L
Sbjct: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA 60
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F S+ Y++ L+ + D+++LAG+M+I+ +S Y G+++N+HPS LP + G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ + G S+H+V + +D G +I A++ + + + V EH +YP V
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 174 V 174
+
Sbjct: 181 I 181
pdb|1CDD|A Escherichia coli >gi|809281|pdb|1CDD|B Escherichia coli
Length = 212
Score = 100 bits (246), Expect = 1e-20
Identities = 56/181 (30%), Positives = 96/181 (52%), Gaps = 7/181 (3%)
Query: 1 MKFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
M V SGNGSN Q + + + V+ VFS+ DA+ LERA + G+A +L
Sbjct: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA 60
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F S+ Y++ L+ + D+++LAG+M+I+ +S Y G+++N+HPS LP + G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ + G S+H+V + +D G +I A++ + + + V EH +YP V
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 174 V 174
+
Sbjct: 181 I 181
sp|P08179|PUR3_ECOLI PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|66483|pir||XYECGF
phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
- Escherichia coli >gi|442731|pdb|1CDE|
Phosphoribosylglycinamide Formyltransferase
(E.C.2.1.2.2) (5'-Phosphoribosylglycinamide
Transformylase) Complex With Glycinamide Ribonucleotide
And The Inhibitor 5-Deaza-5,6,7,8-Tetrahydrofolate
>gi|442965|pdb|1GRC|A Escherichia coli
>gi|442966|pdb|1GRC|B Escherichia coli
>gi|1065335|pdb|1GAR|A Escherichia coli
>gi|1065336|pdb|1GAR|B Escherichia coli
>gi|6730114|pdb|1C2T|A Chain A, New Insights Into
Inhibitor Design From The Crystal Structure And Nmr
Studies Of E. Coli Gar Transformylase In Complex With
Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid.
>gi|6730115|pdb|1C2T|B Chain B, New Insights Into
Inhibitor Design From The Crystal Structure And Nmr
Studies Of E. Coli Gar Transformylase In Complex With
Beta-Gar And 10-Formyl-5,8,10-Trideazafolic Acid.
>gi|147426 (M13747) purN gene product [Escherichia coli]
>gi|1788846 (AE000336) phosphoribosylglycinamide
formyltransferase 1 [Escherichia coli]
>gi|1805560|dbj|BAA16388| (D90878)
phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
[Escherichia coli]
Length = 212
Score = 100 bits (246), Expect = 1e-20
Identities = 56/181 (30%), Positives = 96/181 (52%), Gaps = 7/181 (3%)
Query: 1 MKFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
M V SGNGSN Q + + + V+ VFS+ DA+ LERA + G+A +L
Sbjct: 1 MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQAGIATHTLIASA 60
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F S+ Y++ L+ + D+++LAG+M+I+ +S Y G+++N+HPS LP + G
Sbjct: 61 FDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAGRLLNIHPSLLPKYPGLHT 120
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ + G S+H+V + +D G +I A++ + + + V EH +YP V
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGDSEDDITARVQTQEHAIYPLV 180
Query: 174 V 174
+
Sbjct: 181 I 181
gi|1562542 (U68765) 5'-phosphoribosylglycinamide transformylase [Salmonella
typhimurium]
Length = 212
Score = 97.1 bits (238), Expect = 8e-20
Identities = 53/181 (29%), Positives = 96/181 (52%), Gaps = 7/181 (3%)
Query: 1 MKFAVFASGNGSNFQTL-----AEQFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
M V SGNGSN Q + A++ ++ VFS+ DA+ LERA G+ +L
Sbjct: 1 MNIVVLISGNGSNLQAIIDACEAKKIKGTLRAVFSNKADAFGLERAREAGIPAQALTADR 60
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
F S+ +++ L+ + D+++LAG+M+I+ ++ Y G+++N+HPS LP + G
Sbjct: 61 FDSRDAFDRELIRKIDAYAPDVVVLAGFMRILSPMFVAHYYGRLLNIHPSLLPKYPGLHT 120
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELI--AQISLAYHEDLEVYERSVHEAEHKLYPEV 173
+ + G S+H+V + +D G +I A++ + ++ + V EH +YP V
Sbjct: 121 HRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFANDSEDDITARVQTQEHAIYPLV 180
Query: 174 V 174
+
Sbjct: 181 I 181
dbj|BAA10312| (D64001) phosphoribosylglycinamide formyltransferase [Synechocystis
sp.]
Length = 217
Score = 94.8 bits (232), Expect = 4e-19
Identities = 52/179 (29%), Positives = 101/179 (56%), Gaps = 9/179 (5%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPDQ-----VKFVFSDHHDAYVLERAERLGVAKASLELKE 55
+ + ASG+GSNF+ +A+ + VK V ++ +A V +RA GV L ++
Sbjct: 29 LSLGIMASGSGSNFEAIAKAIKEGKLNAVVKLVIYNNPNAGVRKRAMDHGVPHRLLNHRD 88
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
+ S+ D ++ +VE + ++ +++AG+M+I+ +L + +++N+HPS LP F G
Sbjct: 89 YDSREDLDQDIVEHFRQAGVEWVIMAGWMRIVTPVLLDAFSRRVLNIHPSLLPSFRG-VR 147
Query: 116 AIEESHEA-KKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYP 171
A+E++ A K G ++HY + VD+G ++AQ + + + E + + EH+L+P
Sbjct: 148 AVEQALAAGVKVSGCTVHYAEATVDSGPIVAQAVVPILADDTGETLHQRIQVQEHRLFP 206
gb|AAD21688.1| (AC004793) This gene is a member of the formyl transferase family
PF|00551 and may be a pseudogene of gb|X74767
phosphoribosylglycinamide formyl transferase (PUR3) from
Arabidopsis thaliana since our sequence differs from
PUR3... >gi|4753662|emb|CAA52779.2| (X74767)
phosphoribosylglycinamide formyltransferase [Arabidopsis
thaliana]
Length = 292
Score = 88.2 bits (215), Expect = 4e-17
Identities = 66/194 (34%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVA-----KASL 51
K AVF SG GSNF+ + E D V + ++ D E A G+ KA
Sbjct: 79 KLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPKAKR 138
Query: 52 ELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFA 111
E + S + LV++L+ +D +LLAGY+K+I ++ + +I+N+HP+ LP F
Sbjct: 139 EPSDGLSPSE----LVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAFG 194
Query: 112 GSPHAIEESHEA-----KKGLGISIHYVDEGVDTGELIAQIS---LAYHEDLEVYERSVH 163
G + H+A + G +IH+V+E DTG ++AQ + +A E+ +R +H
Sbjct: 195 GKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVLH 254
Query: 164 EAEHKLYPEVVRQI 177
E EHKLY EVV I
Sbjct: 255 E-EHKLYVEVVGAI 267
gi|1055176 (U40060) coded for by C. elegans cDNA yk45e7.3; coded for by C.
elegans cDNA yk45e7.5; similar to the multifunctional
enzyme in purine biosynthesis
phosphoribosylamine-glycine
ligase/phosphoribosylformylglycinamidine
cyclo-ligase/phosphorib...
Length = 946
Score = 87.4 bits (213), Expect = 7e-17
Identities = 56/182 (30%), Positives = 101/182 (54%), Gaps = 11/182 (6%)
Query: 1 MKFAVFASGNGSNFQTLAEQF--PDQ---VKFVFSDHHDAYVLERAERLGVAKASLELKE 55
++ A+ SG G+N Q L E+ PD V V S+ A L A G+ + +
Sbjct: 758 VRVAILISGTGTNMQKLIERSKTPDSNCDVVLVVSNKEGAGGLTIAASYGIP--TKVVPH 815
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
+ +V + L ++LKD +L+ L GYM+I+ +S++ +IIN+HPS LP F G+ H
Sbjct: 816 TADRVTGDTELAQVLKDFGTELVCLGGYMRILSPCFISQFPSRIINIHPSLLPAFKGA-H 874
Query: 116 AIEES-HEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPE 172
A++++ + + +G + H+VDE VD G++IAQ + + + +E + + EH+++P
Sbjct: 875 ALQDALNFGVRIVGCTAHFVDELVDHGDIIAQRPVVVEDTDTIETVRQKIQLQEHEMFPN 934
Query: 173 VV 174
+
Sbjct: 935 AM 936
gb|AAC96120.1| (AF083221) glycinamide ribonucleotide transformylase [Fugu
rubripes]
Length = 1008
Score = 87.0 bits (212), Expect = 9e-17
Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 7/174 (4%)
Query: 11 GSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKA 65
G+N Q L +Q Q+ V S+ L+RA G+ ++ K + S+ +++
Sbjct: 812 GTNLQALIDQAKRPSSSAQIVVVISNRPGVQGLKRASLAGIQTRVVDHKLYGSRAEFDST 871
Query: 66 LVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKK 125
+ +L++ ++L+ LAG+M+I+ T + K+ GK++N+HPS LP F G + +
Sbjct: 872 INTVLEEFGVELVCLAGFMRILTGTFVKKWTGKLLNIHPSLLPSFKGVNAQKQALQAGVR 931
Query: 126 GLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVVRQI 177
G ++H+V E VD G +I Q + + + + + EAEH+ +P + +
Sbjct: 932 VAGCTVHFVAEEVDAGAIIVQEAVPVLVGDTEDSLCDRIREAEHRAFPTALELV 985
sp|P52422|PUR3_ARATH PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE PRECURSOR (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|480622|pir||S37105
phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
- Arabidopsis thaliana
Length = 226
Score = 87.0 bits (212), Expect = 9e-17
Identities = 65/194 (33%), Positives = 101/194 (51%), Gaps = 23/194 (11%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-----QVKFVFSDHHDAYVLERAERLGVA-----KASL 51
K AVF SG GSNF+ + E D V + ++ D E A G+ KA
Sbjct: 33 KLAVFVSGGGSNFRKIHEGCSDGSVNGDVVLLVTNKKDCGGAEYARSNGIPVLVFPKAKR 92
Query: 52 ELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFA 111
E + S + LV++L+ +D +LLAGY+K+I ++ + +I+N+HP+ LP F
Sbjct: 93 EPSDGLSPSE----LVDVLRKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAFG 148
Query: 112 GSPHAIEESHEA-----KKGLGISIHYVDEGVDTGELIAQIS---LAYHEDLEVYERSVH 163
G + H+A + G +IH+V+E DTG ++AQ + +A E+ +R +H
Sbjct: 149 GKGLYGIKVHKAVLESGARYSGPTIHFVNEEYDTGRILAQSAVRVIANDTPEELAKRVLH 208
Query: 164 EAEHKLYPEVVRQI 177
E +HKLY EVV I
Sbjct: 209 E-DHKLYVEVVGAI 221
gb|AAF05726.1|AF191543_1 (AF191543) PurN [Mycobacterium avium subsp. paratuberculosis]
Length = 209
Score = 86.6 bits (211), Expect = 1e-16
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 2 KFAVFASGNGSNFQTLAE----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEFS 57
+ V ASG GS +L + +P +V V +D D + A + ++ L +
Sbjct: 14 RVVVLASGTGSLLSSLIDAAVGDYPARVVAVGADR-DCLATQIAAAASLPSFTVRLGDHP 72
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
+ ++ A+ E DL++ AG+MKI+G LS++ G++IN HP+ LP F G+
Sbjct: 73 DRAAWDAAITEATAAHSPDLVVSAGFMKILGPQFLSRFYGRVINTHPALLPAFPGAHGVA 132
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQISLAY--HEDLEVYERSVHEAEHKLYPEVVR 175
E K G ++H VD G DTG ++AQ S+ +D + + E KL +VV
Sbjct: 133 EALAYGVKVTGCTVHLVDAGTDTGPILAQQSVPVLDGDDEQTLHERIKVTERKLLVDVVA 192
Query: 176 QI 177
I
Sbjct: 193 AI 194
sp|P52423|PUR3_VIGUN PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE PRECURSOR (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|984818 (U30875) glycinamide
ribonucleotide transformylase (GART) [Vigna unguiculata]
Length = 312
Score = 86.6 bits (211), Expect = 1e-16
Identities = 65/193 (33%), Positives = 97/193 (49%), Gaps = 22/193 (11%)
Query: 2 KFAVFASGNGSNFQTLAEQFPDQVKFVFSDHHDAYVL--ERAERLGVAKA---SLELKEF 56
K AVF SG GSNF+++ E S H D VL ++E G A + + F
Sbjct: 100 KLAVFVSGGGSNFRSIHEASKKG-----SLHGDVTVLVTNKSECGGAQYARNNGIPVILF 154
Query: 57 SSKVDYEKAL-----VEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFA 111
D K L V+ L+ E+D +LLAGY+K+I ++ ++ I N+HPS LP F
Sbjct: 155 PKAKDEPKGLSPCDLVDTLRKFEVDFVLLAGYLKLIPVELIRAFERSIFNIHPSLLPAFG 214
Query: 112 GSPHAIEESHEA-----KKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHE 164
G + + H+A + G +IH+VDE DTG ++AQ + + ++ E V
Sbjct: 215 GKGYYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTAEELAARVLN 274
Query: 165 AEHKLYPEVVRQI 177
EH+LY EVV +
Sbjct: 275 EEHQLYVEVVEAL 287
gi|2984098 (AE000757) formyltetrahydrofolate deformylase [Aquifex aeolicus]
Length = 283
Score = 81.9 bits (199), Expect = 3e-15
Identities = 56/181 (30%), Positives = 94/181 (50%), Gaps = 10/181 (5%)
Query: 2 KFAVFASGNGSNFQTLAEQF-----PDQVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
K A+F S F L +F +VK V S+H A + AE GV + K
Sbjct: 88 KVAIFVSKQEHCFYDLMHRFYSGELKGEVKLVISNHEKAR--KTAEFFGVPFYHIP-KTK 144
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
+K++ EK +E+LK+ ++L++LA YM+I+ + +Y+ KIIN+H S+LP F G+
Sbjct: 145 ENKLEAEKRELELLKEYGVELVVLARYMQILSPKFVKEYENKIINIHHSFLPAFPGAKPY 204
Query: 117 IEESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVV 174
+ K +G + HYV E +D G +I Q + +++ + LE + R + E + V
Sbjct: 205 ERAFGKGVKIIGATAHYVTEELDEGPIIEQDVVRVSHKDSLEDFIRKGKDIEKVVLARAV 264
Query: 175 R 175
+
Sbjct: 265 K 265
emb|CAB36670.1| (AL035500) putative phosphoribosylglycinamide formyltransferase
[Mycobacterium leprae]
Length = 215
Score = 80.8 bits (196), Expect = 7e-15
Identities = 52/172 (30%), Positives = 88/172 (50%), Gaps = 14/172 (8%)
Query: 2 KFAVFASGNGSNFQTLAE----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEFS 57
+ V ASG GS +L + +P +V V D D + A+ V ++ L +
Sbjct: 14 RVVVLASGTGSLLGSLIDASVGNYPARVVAVGVDR-DCGATKIAKAASVPTFTVRLADPP 72
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
+ ++ + E + + DL++LAG+M+I+G L+++ G+I+N HP+ LP F G+
Sbjct: 73 GRDAWDAKITEAVASYKPDLVVLAGFMRILGPQFLARFFGRIVNTHPALLPAFPGTHGVA 132
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQISL---------AYHEDLEVYER 160
+ K G ++H VD G DTG ++AQ S+ A HE ++V ER
Sbjct: 133 DALAYGVKVTGATVHLVDAGTDTGPILAQQSVPVLDGDDTAALHERIKVIER 184
emb|CAB46526.1| (AJ243305) 5'-phosphoribosylglycinamide formyltransferase
[Rhizobium leguminosarum]
Length = 186
Score = 80.0 bits (194), Expect = 1e-14
Identities = 41/122 (33%), Positives = 75/122 (60%), Gaps = 4/122 (3%)
Query: 54 KEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGS 113
K+++SK +E A+ L + + D++ LAGYM+++ AT + +Y+G+++N+HPS LP F G
Sbjct: 21 KDYASKDAHEAAIFSALDELKPDILCLAGYMRLLTATFIQRYQGRMLNIHPSLLPLFPGL 80
Query: 114 PHAIEESHEAKKGL-GISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLY 170
H + + +A + G ++H+V EG+D G +I Q + + + E V EH++Y
Sbjct: 81 -HTHQRAIDAGMRIAGCTVHFVTEGMDEGPVIGQAAVPVLLGDTAESLAARVLTIEHQIY 139
Query: 171 PE 172
P+
Sbjct: 140 PQ 141
emb|CAB01994| (Z79700) purN [Mycobacterium tuberculosis]
Length = 215
Score = 80.0 bits (194), Expect = 1e-14
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 7/185 (3%)
Query: 2 KFAVFASGNGSNFQTLAE----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEFS 57
+ V ASG GS ++L + +P +V V D + E A V ++ L +
Sbjct: 14 RLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDR-ECRAAEIAAEASVPVFTVRLADHP 72
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
S+ ++ A+ E DL++ AG+M+I+G LS++ G+ +N HP+ LP F G+
Sbjct: 73 SRDAWDVAITAATAAHEPDLVVSAGFMRILGPQFLSRFYGRTLNTHPALLPAFPGTHGVA 132
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVVR 175
+ K G ++H VD G DTG ++AQ + + +D E + E +L V
Sbjct: 133 DALAYGVKVTGATVHLVDAGTDTGPILAQQPVPVLDGDDEETLHERIKVTERRLLVAAVA 192
Query: 176 QIILH 180
+ H
Sbjct: 193 ALATH 197
dbj|BAA89443.1| (AB003159) 5'-phosphoribosylglycinamide formyltransferase
[Corynebacterium ammoniagenes]
Length = 199
Score = 77.6 bits (188), Expect = 6e-14
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPDQVKFV-FSDHHDAYVLERAERLGVAKASLELKEFSSK 59
++ V SG GS Q + + D + + + RA+ G+ + L S +
Sbjct: 15 LQVVVLVSGTGSLLQNIIDNQDDSYRVIKVVADKPCPGINRAQDAGIDTEVVLLG--SDR 72
Query: 60 VDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEE 119
+ K LV + D+++ AG+MKI+G L+ ++G+ IN HP+ LP F G+ +
Sbjct: 73 AQWNKDLVAAVGTA--DVVVSAGFMKILGPEFLASFEGRTINTHPALLPSFPGAHGVRDA 130
Query: 120 SHEAKKGLGISIHYVDEGVDTGELIAQISLAYHEDLEVYERSVHEAEHKLYPEVVRQII 178
K G ++H+VD GVDTG +IAQ A + E E S+HE + E++ Q++
Sbjct: 131 LAYGVKVTGSTVHFVDAGVDTGRIIAQ--RAVEIEAEDDEASLHERIKSVERELIVQVL 187
ref|NP_010696.1|ADE8| glycinamide ribotide transformylase; Ade8p
>gi|131622|sp|P04161|PUR3_YEAST
PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE (GART) (GAR
TRANSFORMYLASE) (5'-PHOSPHORIBOSYLGLYCINAMIDE
TRANSFORMYLASE) >gi|76338|pir||A8BYD ADE8 protein -
yeast (Saccharomyces cerevisiae) >gi|171015 (M36585)
ADE8 gene product [Saccharomyces cerevisiae] >gi|927339
(U32274) Ade8p: glycinamide ribotide transformylase, EC
number 2.1.2.2; YDR408C; CAI: 0.12 [Saccharomyces
cerevisiae] >gi|5853040|gb|AAD54285.1| (AF174131) ADE8
protein [Cloning vector pRS4110]
>gi|5853042|gb|AAD54286.1| (AF174132) ADE8 protein
[Cloning vector pRS4210] >gi|5853044|gb|AAD54287.1|
(AF174133) ADE8 protein [Cloning vector pRS4213]
>gi|224495|prf||1106229A ADE8 gene [Saccharomyces
cerevisiae] >gi|226066|prf||1409346A ADE8 gene
[Saccharomyces cerevisiae]
Length = 214
Score = 75.7 bits (183), Expect = 2e-13
Identities = 62/208 (29%), Positives = 98/208 (46%), Gaps = 32/208 (15%)
Query: 2 KFAVFASGNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAE------------ 42
+ V SG+GSN Q L + + V S AY L RA
Sbjct: 3 RIVVLISGSGSNLQALIDAQKQGQLGEDAHIVSVISSSKKAYGLTRAADNNIPTKVCSLY 62
Query: 43 --RLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKG-KI 99
G+AK + ++ +E L +++ +++ D+I+ AG++ I+G+T LS+ + I
Sbjct: 63 PYTKGIAKEDKAARA-KARSQFENDLAKLVLEEKPDVIICAGWLLILGSTFLSQLQSVPI 121
Query: 100 INVHPSYLPDFAGSPHAIE----ESHEAKKGL--GISIHYVDEGVDTGELIAQISLAY-- 151
+N+HP+ F G+ HAIE + + K L G +HYV E VD GE + L
Sbjct: 122 LNLHPALPGCFDGTTHAIEMAWRKCQDENKPLTAGCMVHYVIEEVDKGEPLVVKKLEIIP 181
Query: 152 -HEDLEVYERSVHEAEHKLYPEVVRQII 178
E LE YE+ VH+AEH E +++
Sbjct: 182 GEETLEQYEQRVHDAEHIAIVEATYKVL 209
gb|AAD46927.1|AF171879_1 (AF171879) glycinamide ribonucleotide transformylase Ade8
[Schizosaccharomyces pombe]
Length = 207
Score = 74.9 bits (181), Expect = 4e-13
Identities = 59/198 (29%), Positives = 96/198 (47%), Gaps = 25/198 (12%)
Query: 5 VFASGNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAERLGVAKASLEL---- 53
V SG+GSN Q + + + V V S+ +AY LERA + G+ + L
Sbjct: 7 VLISGSGSNLQAIIDATLNGVLKGEAAVTHVLSNRKNAYGLERAAKAGIPTSLHTLLPYK 66
Query: 54 KEFSSKVD---YEKALVEILKDQEIDLILLAGYMKIIGATVL---SKYKGKIINVHPSYL 107
KE+ ++ Y+ L E + + L++ AG+M I+ VL K IIN+HP+ L
Sbjct: 67 KEYGPEIGRKKYDAELAEKIIKLQPSLVVCAGWMHILSPEVLIPLETNKIGIINLHPA-L 125
Query: 108 PDFAGSPHAIEESHEAKKG-----LGISIHYVDEGVDTGE--LIAQISLAYHEDLEVYER 160
P HAIE + EA + G +H+V VD G+ ++ ++ + + +E E
Sbjct: 126 PGAFNGIHAIERAFEAAQQGKITHTGAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEE 185
Query: 161 SVHEAEHKLYPEVVRQII 178
+H AEH + + + QII
Sbjct: 186 KIHAAEHVILVQAIHQII 203
emb|CAB42069.1| (AL049755) glycinamide ribonucleotide transformylase ade8
[Schizosaccharomyces pombe]
Length = 197
Score = 72.2 bits (174), Expect = 3e-12
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 25/194 (12%)
Query: 9 GNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAERLGVAKASLEL----KEFS 57
G+GSN Q + + + V V S+ +AY LERA + G+ + L KE+
Sbjct: 1 GSGSNLQAIIDATLNGVLKGEAAVTHVLSNRKNAYGLERAAKAGIPTSLHTLLPYKKEYG 60
Query: 58 SKVD---YEKALVEILKDQEIDLILLAGYMKIIGATVL---SKYKGKIINVHPSYLPDFA 111
++ Y+ L E + + L++ AG+M I+ VL K IIN+HP+ LP
Sbjct: 61 PEIGRKKYDAELAEKIIKLQPSLVVCAGWMHILSPEVLIPLETNKIGIINLHPA-LPGAF 119
Query: 112 GSPHAIEESHEAKKG-----LGISIHYVDEGVDTGE--LIAQISLAYHEDLEVYERSVHE 164
HAIE + EA + G +H+V VD G+ ++ ++ + + +E E +H
Sbjct: 120 NGIHAIERAFEAAQQGKITHTGAMVHWVIAAVDEGKPIIVQEVPILSTDSIEALEEKIHA 179
Query: 165 AEHKLYPEVVRQII 178
AEH + + + QII
Sbjct: 180 AEHVILVQAIHQII 193
emb|CAA05590| (AJ002571) YkkE [Bacillus subtilis] >gi|2633665|emb|CAB13168|
(Z99110) similar to formyltetrahydrofolate deformylase
[Bacillus subtilis]
Length = 300
Score = 67.1 bits (161), Expect = 9e-11
Identities = 41/132 (31%), Positives = 70/132 (52%), Gaps = 4/132 (3%)
Query: 24 QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGY 83
++ V S+H +A E ERL + ++ + + + EK +E+L+ ++D+I+LA Y
Sbjct: 132 EIAVVISNHEEAR--ELVERLNIPFHYMKANK-DIRAEVEKKQLELLEQYDVDVIVLARY 188
Query: 84 MKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGEL 143
M+I+ +S + +IIN+H S+LP F G+ K +G + HYV +D G +
Sbjct: 189 MQILTPDFVSAHPNRIINIHHSFLPAFIGANPYKRAYERGVKLIGATSHYVTNDLDEGPI 248
Query: 144 IAQ-ISLAYHED 154
I Q I H D
Sbjct: 249 IEQDIKRVDHRD 260
gb|AAD08476.1| (AE000644) formyltetrahydrofolate hydrolase (purU) [Helicobacter
pylori 26695]
Length = 293
Score = 66.3 bits (159), Expect = 2e-10
Identities = 34/106 (32%), Positives = 63/106 (59%), Gaps = 6/106 (5%)
Query: 58 SKVDYEKALVEILKDQEI------DLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFA 111
++V +EK ++EI+K+ E+ DL++LA YM+I+ +Y+ +I+N+H S+LP F
Sbjct: 151 NQVLHEKEVLEIIKNLELKHKVSADLLVLAKYMRILSHDFTKRYENQILNIHHSFLPAFI 210
Query: 112 GSPHAIEESHEAKKGLGISIHYVDEGVDTGELIAQISLAYHEDLEV 157
G+ + K +G + H+V+E +D G +I Q +L + + V
Sbjct: 211 GANPYQQAFERGVKVIGATAHFVNESLDAGPIIIQDTLPINHNYSV 256
sp|Q46339|PURU_CORSP FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
>gi|2127433|pir||I40891 formyltetrahydrofolate
deformylase (EC 3.5.1.10) - Corynebacterium sp
>gi|927593 (U23955) 10-formyltetrahydrofolate hydrolase
[Corynebacterium sp.]
Length = 286
Score = 65.6 bits (157), Expect = 3e-10
Identities = 41/133 (30%), Positives = 70/133 (51%), Gaps = 3/133 (2%)
Query: 14 FQTLAEQFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQ 73
F+ + P +V V S+H D L E G+ + + + +K E AL+E++
Sbjct: 108 FRMHSGDLPIEVVGVASNHPDHRSL--VEWYGIGFHHIPISK-DTKPRAEAALLELIDQT 164
Query: 74 EIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHY 133
+L++LA YM+++ + S+ GK IN+H S+LP F G+ + K +G + HY
Sbjct: 165 GAELVVLARYMQVLSDHLASELTGKTINIHHSFLPSFKGAKPYHQAWERGVKTVGATAHY 224
Query: 134 VDEGVDTGELIAQ 146
V+ +D G +IAQ
Sbjct: 225 VNSELDEGPIIAQ 237
emb|CAB73055.1| (AL139076) formyltetrahydrofolate deformylase [Campylobacter
jejuni]
Length = 274
Score = 63.2 bits (151), Expect = 1e-09
Identities = 36/130 (27%), Positives = 69/130 (52%), Gaps = 4/130 (3%)
Query: 25 VKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYM 84
+K V S+H+ + + E+ + + + K + E +++ L+ + D ++LA YM
Sbjct: 108 IKAVISNHNS--LKDLVEKFEIPYHFISAENLDRK-EQENQILKCLEQYKFDYLVLAKYM 164
Query: 85 KIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGELI 144
+I+ + ++GKIIN+H S+LP F G+ + K +G + H+V+ +D G +I
Sbjct: 165 RILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNLDEGPII 224
Query: 145 AQ-ISLAYHE 153
Q +S HE
Sbjct: 225 TQAVSPVNHE 234
gi|4155950 (AE001556) FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori
J99]
Length = 293
Score = 63.2 bits (151), Expect = 1e-09
Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 62 YEKALVEILKDQEI------DLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
+EK ++ +KD E+ DL++LA YM+I+ +Y+ +I+N+H S+LP F G+
Sbjct: 155 HEKEVLATIKDLELKHKVSADLLVLAKYMRILSHDFTKRYENQILNIHHSFLPAFIGANP 214
Query: 116 AIEESHEAKKGLGISIHYVDEGVDTGELIAQISLAYHEDLEV 157
+ K +G + H+V+E +D G +I Q +L + + V
Sbjct: 215 YQQAFERGVKVIGATAHFVNESLDAGPIILQDTLPINHNYSV 256
gb|AAF10164.1|AE001917_1 (AE001917) formyltetrahydrofolate deformylase [Deinococcus
radiodurans]
Length = 298
Score = 62.5 bits (149), Expect = 2e-09
Identities = 40/154 (25%), Positives = 76/154 (48%), Gaps = 5/154 (3%)
Query: 24 QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGY 83
++ + S+H D + AE G+ + + + ++K + E V ++ + D +LA Y
Sbjct: 131 EIPLILSNHED--LRRDAEMFGIPFHVIPVTK-ANKAEAEAEQVRLMHEAGADFAVLARY 187
Query: 84 MKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGEL 143
M+I+ + L + +IN+H S+LP F G+ + K +G + HYV E +D G +
Sbjct: 188 MQILSSDFLRGFGRPVINIHHSFLPAFIGANPYRAAFNRGVKLIGATSHYVTEELDAGPI 247
Query: 144 IAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVVR 175
IAQ I + + E + R + E ++ V+
Sbjct: 248 IAQDVIPVTHRETPDTLMRMGRDVERQVLARAVK 281
pir||PN0606 phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) -
Haemophilus influenzae (fragment) >gi|148864 (L04686)
glycinimide ribonucleotide transformylase [Haemophilus
influenzae]
Length = 214
Score = 61.7 bits (147), Expect = 4e-09
Identities = 30/111 (27%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
++V+++K L E + + D I+LA YM+++ +++Y ++IN+H S+LP F G+
Sbjct: 78 TRVEHDKLLAEKIDEYTPDYIVLAKYMRVLNPEFVARYPNRVINIHHSFLPAFIGAKPYQ 137
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAE 166
+ K +G + H+++ +D G +I Q I++ + + E R+ + E
Sbjct: 138 QAYERGVKIIGATAHFINNELDQGPIIMQNVINVDHTYNAEAMMRAGRDVE 188
sp|Q03432|PURU_HAEIN FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
>gi|1074101|pir||E64131 formyltetrahydrofolate hydrolase
(purU) homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1574433 (U32833) formyltetrahydrofolate deformylase
(purU) [Haemophilus influenzae Rd]
Length = 278
Score = 61.3 bits (146), Expect = 5e-09
Identities = 30/111 (27%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
++V+++K L E + + D I+LA YM+++ +++Y ++IN+H S+LP F G+
Sbjct: 142 TRVEHDKLLAEKIDEYTPDYIVLAKYMRVLNPEFVARYPNRVINIHHSFLPAFIGAKPYQ 201
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAE 166
+ K +G + H+++ +D G +I Q I++ + + E R+ + E
Sbjct: 202 QAYKRGVKIIGATAHFINNELDQGPIIMQNVINVDHTYNAEAMMRAGRDVE 252
sp|Q55135|PURU_SYNY3 FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
>gi|1001129|dbj|BAA10270| (D64001)
phosphoribosylglycinamide formyltransferase
[Synechocystis sp.]
Length = 284
Score = 60.5 bits (144), Expect = 9e-09
Identities = 40/160 (25%), Positives = 82/160 (51%), Gaps = 6/160 (3%)
Query: 24 QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGY 83
++ + S+H D + A++ G+ L + + +K+ E A + +LK +IDL++LA Y
Sbjct: 117 EIPLIISNHPDLKSI--ADQFGIDFHCLPITK-ENKLAQETAELALLKQYQIDLVVLAKY 173
Query: 84 MKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGEL 143
++I+ + ++ IIN+H S+LP F G+ K +G + HY +D G +
Sbjct: 174 LQILTTDFVVQFPN-IINIHHSFLPAFPGANPYHRAHERGVKIIGATAHYATAQLDEGPI 232
Query: 144 IAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVVRQIILHQ 181
I Q + +++ ++++ R + E + VR + H+
Sbjct: 233 IEQDVVRVSHRDNVDDLIRKGRDLERVVLARAVRLHLQHR 272
sp|P38480|PURU_SHIFL FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
Length = 280
Score = 58.6 bits (139), Expect = 3e-08
Identities = 25/89 (28%), Positives = 53/89 (59%)
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
S+ ++++ + + + + D ++LA YM+++ ++++ KIIN+H S+LP F G+
Sbjct: 144 SRNEHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYH 203
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQ 146
+ K +G + HYV++ +D G +I Q
Sbjct: 204 QAYERGVKIIGATAHYVNDNLDEGPIIMQ 232
gb|AAF11574.1|AE002039_4 (AE002039) phosphoribosylglycinamide formyltransferase [Deinococcus
radiodurans]
Length = 196
Score = 58.2 bits (138), Expect = 4e-08
Identities = 39/157 (24%), Positives = 70/157 (43%), Gaps = 10/157 (6%)
Query: 1 MKFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKE 55
++ A AS GS + L + + + + S++ + L A G+ A L
Sbjct: 3 LRLAFLASHGGSAARALVQACRAGELDAEPLALASNNSRSPALAWAREAGLRTAHLSSAT 62
Query: 56 FSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPH 115
+ A+ + L D ++L+GYMK +G L + G+++N+HPS LP G
Sbjct: 63 SPDPDALDAAIHDFLVGSGADTLVLSGYMKALGPRTLGAFAGRVLNIHPSLLPRHGGRGL 122
Query: 116 AIEESHEAKKGL-----GISIHYVDEGVDTGELIAQI 147
+ HE+ G ++H V G+D G ++ Q+
Sbjct: 123 YGDRVHESVLAAGDPESGATVHLVTAGIDEGPVLEQV 159
emb|CAB10517.1| (Z97343) formyltransferase purU homolog [Arabidopsis thaliana]
Length = 295
Score = 57.8 bits (137), Expect = 6e-08
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 28 VFSDHHDA---YVLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYM 84
VFS+H A +V+ +R G++ L + +K++ E ++E++K D ++LA YM
Sbjct: 130 VFSNHERAPNTHVMRFLQRHGISYHYLPTTD-QNKIEEE--ILELVKGT--DFLVLARYM 184
Query: 85 KIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGELI 144
+++ L Y +IN+H LP F G + K +G + H+V E +D+G +I
Sbjct: 185 QLLSGNFLKGYGKDVINIHHGLLPSFKGRNPVKQAFDAGVKLIGATTHFVTEELDSGPII 244
Query: 145 AQI--SLAYHEDLEVYERSVHEAEHKLYPEVVR 175
Q+ +++ ++L + + + E K + ++
Sbjct: 245 EQMVERVSHRDNLRSFVQKSEDLEKKCLMKAIK 277
gi|402694 (M64675) tgs [Escherichia coli]
Length = 263
Score = 57.4 bits (136), Expect = 8e-08
Identities = 24/86 (27%), Positives = 51/86 (58%)
Query: 61 DYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEES 120
++++ + + + + D ++LA YM+++ ++++ KIIN+H S+LP F G+ +
Sbjct: 130 EHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAY 189
Query: 121 HEAKKGLGISIHYVDEGVDTGELIAQ 146
K +G + HYV++ +D G +I Q
Sbjct: 190 ERGVKIIGATAHYVNDNLDEGPIIMQ 215
sp|P37051|PURU_ECOLI FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
>gi|625722|pir||C36871 formyltetrahydrofolate
deformylase (EC 3.5.1.10) - Escherichia coli >gi|410155
(L20251) formyltetrahydrofolate hydrolase [Escherichia
coli] >gi|1651625|dbj|BAA36100| (D90758)
Formyltetrahydrofolate deformylase (EC 3.5.1.10)
(formyl-fh(4) hydrolase). [Escherichia coli]
>gi|1651634|dbj|BAA36112| (D90759)
Formyltetrahydrofolate deformylase (EC 3.5.1.10)
(formyl-fh(4) hydrolase). [Escherichia coli] >gi|1787483
(AE000221) formyltetrahydrofolate deformylase; for
purT-dependent FGAR synthesis [Escherichia coli]
>gi|1805509|dbj|BAA16026| (D90852)
FORMYLTETRAHYDROFOLATE DEFORMYLASE (EC 3.5.1.10)
(FORMYL-FH(4) HYDROLASE). [Escherichia coli]
Length = 280
Score = 57.4 bits (136), Expect = 8e-08
Identities = 24/86 (27%), Positives = 51/86 (58%)
Query: 61 DYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEES 120
++++ + + + + D ++LA YM+++ ++++ KIIN+H S+LP F G+ +
Sbjct: 147 EHDQKMADAIDAYQPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAY 206
Query: 121 HEAKKGLGISIHYVDEGVDTGELIAQ 146
K +G + HYV++ +D G +I Q
Sbjct: 207 ERGVKIIGATAHYVNDNLDEGPIIMQ 232
emb|CAB39401.1| (AJ011316) purU protein [Methylobacterium sp. CM4]
Length = 287
Score = 55.4 bits (131), Expect = 3e-07
Identities = 25/84 (29%), Positives = 49/84 (57%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
E L+E+++ ++++LA YM+++ A + ++ + IN+H S+LP F G+ +
Sbjct: 154 EDKLLELIERTGTEVVVLARYMQVLSAELSARLSRRCINIHHSFLPGFKGAKPYHQAYER 213
Query: 123 AKKGLGISIHYVDEGVDTGELIAQ 146
K +G + HYV + +D G +I Q
Sbjct: 214 GVKLMGATAHYVTDDLDEGPIIEQ 237
emb|CAA65608| (X96865) phosphoribosylglycinamide formyltransferase [Glycine max]
Length = 295
Score = 55.4 bits (131), Expect = 3e-07
Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 2 KFAVFASGNGSNFQTLAE-----QFPDQVKFVFSDHHDAYVLERAERLGVAKASLELKEF 56
K VF SG G+NF+ + E V + ++ D E A G+ + L
Sbjct: 87 KLGVFVSGGGTNFRAIHEATKRGSLHGDVLVLVTNKSDCGGAEYARNNGIP---VILYHI 143
Query: 57 SSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHA 116
S LV+ L+ E+D ILLAGY+ + S K I + + + H
Sbjct: 144 SKDESNGSDLVDTLRKFEVDFILLAGYLNLYQWNDPSLQKIYIQHSSITSSSFWRQGIHG 203
Query: 117 IEESHEA-----KKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKL 169
+ + H+A + G +IH+VDE DTG ++AQ + + ++ +E V + EH+L
Sbjct: 204 M-KVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVQANDTVEELAARVLKEEHQL 262
Query: 170 YPEVVRQI 177
Y EVV +
Sbjct: 263 YVEVVEAL 270
gi|3150048 (AF016634) phosphoribosylglycinamide formyltransferase
[Lactococcus lactis subsp. cremoris]
Length = 30
Score = 53.9 bits (127), Expect = 9e-07
Identities = 26/30 (86%), Positives = 26/30 (86%)
Query: 1 MKFAVFASGNGSNFQTLAEQFPDQVKFVFS 30
MK AVFASGNGSNFQ LAEQFP VKFVFS
Sbjct: 1 MKIAVFASGNGSNFQRLAEQFPKVVKFVFS 30
sp|Q50453|PURU_MYCTU FORMYLTETRAHYDROFOLATE DEFORMYLASE (FORMYL-FH(4) HYDROLASE)
>gi|2145997|pir||S73058 purU protein - Mycobacterium
tuberculosis >gi|560524 (U00024)
phosphoribosylglycinamide formyltransferase (GART)
[Mycobacterium tuberculosis] >gi|1694867|emb|CAB05413|
(Z83018) purU [Mycobacterium tuberculosis]
Length = 310
Score = 52.3 bits (123), Expect = 3e-06
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
++ + E+ +++L +DL++LA YM+I+ L +IN+H S+LP F G+
Sbjct: 175 TRTEAEQRQLQLLSGN-VDLVVLARYMQILSPGFLEAIGCPLINIHHSFLPAFTGAAPYQ 233
Query: 118 EESHEAKKGLGISIHYVDEGVDTGELIAQ 146
K +G + HYV E +D G +I Q
Sbjct: 234 RARERGVKLIGATAHYVTEVLDEGPIIEQ 262
dbj|BAA87143.1| (AB027839) Hypothetical protein [Schizosaccharomyces pombe]
Length = 155
Score = 51.2 bits (120), Expect = 6e-06
Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 18/136 (13%)
Query: 5 VFASGNGSNFQTLAEQFPD-------QVKFVFSDHHDAYVLERAERLGVAKASLEL---- 53
V SG+GSN Q + + + V V S+ +AY LERA + G+ + L
Sbjct: 15 VLISGSGSNLQAIIDATLNGVLKGEAAVTHVLSNRKNAYGLERAAKAGIPTSLHTLLPYK 74
Query: 54 KEFSSKV---DYEKALVEILKDQEIDLILLAGYMKIIGATV---LSKYKGKIINVHPSYL 107
KE+ ++ Y+ L E + + L++ AG+M I+ V L K IIN+HP+ L
Sbjct: 75 KEYGPEIGRKKYDAELAEKIIKLQPSLVVCAGWMHILSPEVLIPLETNKIGIINLHPA-L 133
Query: 108 PDFAGSPHAIEESHEA 123
P HAIE + EA
Sbjct: 134 PGAFNGIHAIERAFEA 149
sp|Q9WYZ8|FMT_THEMA METHIONYL-TRNA FORMYLTRANSFERASE
>gi|4981041|gb|AAD35613.1|AE001728_14 (AE001728)
methionyl-tRNA formyltransferase [Thermotoga maritima]
Length = 313
Score = 50.4 bits (118), Expect = 1e-05
Identities = 31/117 (26%), Positives = 60/117 (50%), Gaps = 2/117 (1%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
+K +E L+ D+I++A Y KI+G VLS + N+HPS LP + G+
Sbjct: 67 KKEALEFLRSVRPDVIIVASYGKILGEKVLSLPRLGCYNIHPSLLPKYRGASPIQRVLEN 126
Query: 123 AKKGLGISIHYVDEGVDTGELIAQ--ISLAYHEDLEVYERSVHEAEHKLYPEVVRQI 177
++ G++I+ + + +D G + Q IS+ E + E+ + E ++ E + ++
Sbjct: 127 GEERTGVTIYKMVKELDAGPIALQKEISVDPFETFDQLEKRLIELSKEMLIEFLEKL 183
sp|P43523|FMT_THETH METHIONYL-TRNA FORMYLTRANSFERASE >gi|1072951|pir||B55228 fmt
protein homolog - Thermus aquaticus
>gi|602915|emb|CAA55696| (X79087) methionyl-tRNA
formyltransferase [Thermus thermophilus]
Length = 305
Score = 49.6 bits (116), Expect = 2e-05
Identities = 27/83 (32%), Positives = 44/83 (52%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
E+A +E L+ ++ ++A Y K+I L +N+HPS LP + G+
Sbjct: 66 EEAFLEALRQAAPEVAVVAAYGKLIPKEALDIPPHGFLNLHPSLLPKYRGAAPVQRALLA 125
Query: 123 AKKGLGISIHYVDEGVDTGELIA 145
++ G+SI +DEG+DTG L A
Sbjct: 126 GERETGVSIMRLDEGLDTGPLYA 148
sp|P94463|FMT_BACSU METHIONYL-TRNA FORMYLTRANSFERASE >gi|2337802|emb|CAA74263| (Y13937)
putative Fmt protein [Bacillus subtilis]
>gi|2633945|emb|CAB13446| (Z99112) methionyl-tRNA
formyltransferase [Bacillus subtilis]
Length = 317
Score = 48.8 bits (114), Expect = 3e-05
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 37 VLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYK 96
V E A R G+ E + +++ AL + DLI+ A + +I+ +L K
Sbjct: 49 VKEEALRHGIPVLQPEKVRLTEEIEKVLAL-------KPDLIVTAAFGQILPKELLDSPK 101
Query: 97 GKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGELIAQISLAYHE--D 154
INVH S LP+ G + KK GI+I Y+ E +D G++I+++ + E +
Sbjct: 102 YGCINVHASLLPELRGGAPIHYSILQGKKKTGITIMYMVEKLDAGDMISKVEVDIEETDN 161
Query: 155 LEVYERSVHEAEHKLYPEVVRQII 178
+ + A KL E V +I
Sbjct: 162 VGTLHDKLSVAGAKLLSETVPNVI 185
emb|CAA71350| (Y10304) Met-tRNAi formyl transferase [Bacillus subtilis]
Length = 317
Score = 48.8 bits (114), Expect = 3e-05
Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 37 VLERAERLGVAKASLELKEFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYK 96
V E A R G+ E + +++ AL + DLI+ A + +I+ +L K
Sbjct: 49 VKEEALRHGIPVLQPEKVRLTEEIEKVLAL-------KPDLIVTAAFGQILPKELLDSPK 101
Query: 97 GKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGELIAQISLAYHE--D 154
INVH S LP+ G + KK GI+I Y+ E +D G++I+++ + E +
Sbjct: 102 YGCINVHASLLPELRGGAPIHYSILQGKKKTGITIMYMVEKLDAGDMISKVEVDIEETDN 161
Query: 155 LEVYERSVHEAEHKLYPEVVRQII 178
+ + A KL E V +I
Sbjct: 162 VGTLHDKLSVAGAKLLSETVPNVI 185
sp|O67890|FMT_AQUAE METHIONYL-TRNA FORMYLTRANSFERASE >gi|2984330 (AE000774)
methionyl-tRNA formyltransferase [Aquifex aeolicus]
Length = 303
Score = 48.0 bits (112), Expect = 5e-05
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
+K L+ ++++ + D I++ Y KI+ VL K IN+H S LP + G+
Sbjct: 65 KKELIPLVEELKPDCIVVVAYGKILPKEVLDLPPYKTINLHASLLPKYRGAAPIQRAIMA 124
Query: 123 AKKGLGISIHYVDEGVDTGELIAQISLAYHED 154
+K G ++ V+E +D G+++AQ + E+
Sbjct: 125 GEKETGNTVMLVNEEMDAGDILAQEKIPIEEE 156
sp|O83737|FMT_TREPA METHIONYL-TRNA FORMYLTRANSFERASE >gi|3323062 (AE001247)
methionyl-tRNA formyltransferase (fmt) [Treponema
pallidum]
Length = 319
Score = 46.5 bits (108), Expect = 1e-04
Identities = 24/84 (28%), Positives = 43/84 (50%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
++A + ++ D+++ Y KI G L+ + INVHPS LP + GS
Sbjct: 74 DRAFYDAVEALRPDVLVCFAYGKIFGPRFLALFPRGAINVHPSLLPRWRGSTPVPAAILA 133
Query: 123 AKKGLGISIHYVDEGVDTGELIAQ 146
G+++ Y+ E +D G+++AQ
Sbjct: 134 GDCETGVTLQYIGEEMDAGDILAQ 157
emb|CAA72163| (Y11304) PurU-like protein [Rhodobacter capsulatus]
Length = 274
Score = 44.9 bits (104), Expect = 4e-04
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 58 SKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAI 117
+K + E L++++++ +L++LAGYM I + K GKII +H S+L F G
Sbjct: 145 NKPEGEGDLLDVVEESGGELVVLAGYM-IQSDKICQKMSGKIIKIHHSFLARFKGGNPYK 203
Query: 118 EESHEAKKGLGISIHYV 134
+ K +G++ HYV
Sbjct: 204 QVYERGVKLIGVTSHYV 220
emb|CAA07644.1| (AJ007747) putative formyl transferase [Bordetella bronchiseptica]
Length = 274
Score = 44.5 bits (103), Expect = 6e-04
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 78 ILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEES--HEAKKGLGISIHYVD 135
IL+ Y I+ VLS +N+H + LP G P+ ++ + H+ + G+++HY+D
Sbjct: 85 ILVHSYSMILRPDVLSLVDYDALNIHAALLPRNRG-PNPVQWALIHDEAE-TGVTLHYLD 142
Query: 136 EGVDTGELIAQ 146
+G+DTG+++AQ
Sbjct: 143 DGLDTGDIVAQ 153
sp|P50932|FMT_RICPR METHIONYL-TRNA FORMYLTRANSFERASE >gi|3860773|emb|CAA14674|
(AJ235270) METHIONYL-TRNA FORMYLTRANSFERASE (fmt)
[Rickettsia prowazekii]
Length = 303
Score = 44.1 bits (102), Expect = 7e-04
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 24 QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDY-------EKALVEILKDQEID 76
+VK VF+ A + L +AK+ + F ++ + ++K + D
Sbjct: 24 EVKAVFTQQPKA----KGRGLHLAKSPIHQLAFEHQIPVYSPSTLRNDETINLIKKIDAD 79
Query: 77 LILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDE 136
+I++ Y I+ +L K +N+HPS LP G+ E + + I +D
Sbjct: 80 IIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDS 139
Query: 137 GVDTGELIAQISLAYHEDLEVYER 160
G+DTG+++ + EDL + R
Sbjct: 140 GLDTGDILLK------EDLNLERR 157
pir||A57363 methionyl-tRNA formyltransferase (EC 2.1.2.9) - Rickettsia
prowazekii (fragment) >gi|785041|emb|CAA88897.1|
(Z49077) L-methionyl-tRNA-fMet N-formyltransferase
[Rickettsia prowazekii]
Length = 293
Score = 44.1 bits (102), Expect = 7e-04
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 17/144 (11%)
Query: 24 QVKFVFSDHHDAYVLERAERLGVAKASLELKEFSSKVDY-------EKALVEILKDQEID 76
+VK VF+ A + L +AK+ + F ++ + ++K + D
Sbjct: 14 EVKAVFTQQPKA----KGRGLHLAKSPIHQLAFEHQIPVYSPSTLRNDETINLIKKIDAD 69
Query: 77 LILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDE 136
+I++ Y I+ +L K +N+HPS LP G+ E + + I +D
Sbjct: 70 IIVVIAYGFIVPKAILEAKKYGCLNIHPSDLPRHRGAAPLQRTIIEGDRKSSVCIMRMDS 129
Query: 137 GVDTGELIAQISLAYHEDLEVYER 160
G+DTG+++ + EDL + R
Sbjct: 130 GLDTGDILLK------EDLNLERR 147
gi|4071216 (AF047478) formyl transferase; WbkC [Brucella melitensis]
Length = 259
Score = 43.8 bits (101), Expect = 0.001
Identities = 28/124 (22%), Positives = 54/124 (42%), Gaps = 3/124 (2%)
Query: 55 EFSSKVDYEKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSP 114
+F++ + E + + D+I+ Y +I L K +N+HPS LP + G+
Sbjct: 59 QFTTAAANSEEFYEFGANFDPDMIISMHYRSLIPGRFLKLAKKGSVNLHPSLLPAYRGTN 118
Query: 115 HAIEESHEAKKGLGISIHYVDEGVDTGELIAQISLAYHED---LEVYERSVHEAEHKLYP 171
+ G S H +DE DTG ++ Q ++ E ++ R + A +L
Sbjct: 119 SVAWVIINGESETGFSYHRMDENFDTGAILLQERISVEETDTAFSLFHRQIARAMLRLEE 178
Query: 172 EVVR 175
+++
Sbjct: 179 VILK 182
sp|P56461|FMT_HELPY METHIONYL-TRNA FORMYLTRANSFERASE >gi|2314297|gb|AAD08187.1|
(AE000620) methionyl-tRNA formyltransferase (fmt)
[Helicobacter pylori 26695]
Length = 303
Score = 42.2 bits (97), Expect = 0.003
Identities = 28/91 (30%), Positives = 47/91 (50%), Gaps = 2/91 (2%)
Query: 67 VEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKG 126
V+ILKD + + I++ Y KI+ VL+ IN+H S LP + G+ E K
Sbjct: 73 VQILKDLKPNFIVVVAYGKILPKEVLTI--APCINLHASLLPKYRGASPIHEMILNDNKI 130
Query: 127 LGISIHYVDEGVDTGELIAQISLAYHEDLEV 157
GIS +D +D+G+++ S + L++
Sbjct: 131 YGISTMLMDVELDSGDILESASFLREDYLDL 161
gb|AAF28330.1|AF207908_1 (AF207908) formyltetrahydrofolate deformylase [Rhodospirillum
rubrum]
Length = 104
Score = 41.4 bits (95), Expect = 0.005
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 93 SKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGISIHYVDEGVDTGELIAQ 146
S G+ IN+H S+LP F G+ + K +G + HYV + +D G +I Q
Sbjct: 2 SALSGRCINIHHSFLPSFKGAKPYHQAHARGVKIIGATAHYVTDALDEGPIIEQ 55
gb|AAF11976.1|AE002073_6 (AE002073) methionyl-tRNA formyltransferase [Deinococcus
radiodurans]
Length = 318
Score = 41.4 bits (95), Expect = 0.005
Identities = 28/97 (28%), Positives = 43/97 (43%)
Query: 70 LKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKKGLGI 129
L+D D+ + Y KI+ A VL + +N H S LP + G+ + G
Sbjct: 80 LRDSGADVAVTCAYGKILPAGVLEIPRFGFLNTHTSLLPRYRGAAPIQWALIRGETVTGT 139
Query: 130 SIHYVDEGVDTGELIAQISLAYHEDLEVYERSVHEAE 166
+I DEG+DTG ++ Q L + E S +E
Sbjct: 140 TIMQTDEGMDTGPVLLQEELPIRPEWTSVELSAALSE 176
emb|CAB53329.1| (AL109974) putative formyltransferase [Streptomyces coelicolor
A3(2)]
Length = 315
Score = 41.4 bits (95), Expect = 0.005
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 66 LVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHEAKK 125
L E LKD + D+I+ + I + + +NVH S LP +AG I +
Sbjct: 69 LFERLKDADPDIIVANNWRTWIPPRIFGLPRHGTLNVHDSLLPKYAGFSPLIWALINGET 128
Query: 126 GLGISIHYVDEGVDTGELIAQ 146
+G++ H +++ +D G+++ Q
Sbjct: 129 EVGVTAHMMNDELDAGDIVRQ 149
emb|CAB72582.1| (AL139074) methionyl-tRNA formyltransferase [Campylobacter jejuni]
Length = 305
Score = 41.0 bits (94), Expect = 0.006
Identities = 22/85 (25%), Positives = 42/85 (48%), Gaps = 2/85 (2%)
Query: 63 EKALVEILKDQEIDLILLAGYMKIIGATVLSKYKGKIINVHPSYLPDFAGSPHAIEESHE 122
+K ++ +KD D I++A Y KI+ +L +N+H S LP + G+
Sbjct: 71 DKNIIREIKDLNPDFIVVAAYGKILPKAILD--LAPCVNLHASLLPKYRGASPIQSAILN 128
Query: 123 AKKGLGISIHYVDEGVDTGELIAQI 147
+ G+ ++EG+DTG ++ +
Sbjct: 129 KDEKSGVCTMLMEEGLDTGAILESL 153
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.317 0.136 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46943468
Number of Sequences: 457798
Number of extensions: 1856139
Number of successful extensions: 9224
Number of sequences better than 1.0e-02: 69
Number of HSP's better than 0.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9109
Number of HSP's gapped (non-prelim): 72
length of query: 182
length of database: 140,871,481
effective HSP length: 56
effective length of query: 126
effective length of database: 115,234,793
effective search space: 14519583918
effective search space used: 14519583918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 93 (40.6 bits)