BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps112 (42 kb reverse) BIO14.03
         (173 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P33537|DPOM_NEUCR  PROBABLE DNA POLYMERASE >gi|283351|pir...    42  0.003

 sp|P33537|DPOM_NEUCR PROBABLE DNA POLYMERASE >gi|283351|pir||S26985 probable
           DNA-directed DNA polymerase (EC 2.7.7.7) - Neurospora
           crassa mitochondrion plasmid maranhar (SGC3)
           >gi|578156|emb|CAA39046| (X55361) putative DNA
           polymerase [Neurospora crassa]
           Length = 1021
           
 Score = 42.2 bits (97), Expect = 0.003
 Identities = 45/177 (25%), Positives = 75/177 (41%), Gaps = 22/177 (12%)

Query: 14  KDETILSFVLKGGRIPTSRILYIKKGNPFK---MKITHEIAEKYRIKQEIKQTRKKTDSP 70
           K++T +   +  G+   SR  ++      K   ++  H+  +  RI    K   K     
Sbjct: 183 KEKTNIHTTIPKGKSKLSRAEFVPHTMDLKFYGVETKHDKEKNIRIFDNGKVILKVKIIK 242

Query: 71  NGLYPLIEAIEKDVSQLLNKQDKDDWEGWKRVFA----YEYLYDVAFNR-------GVRQ 119
           +G+Y LI+ I +D   L   +D    +G KR +     Y Y YD            G  +
Sbjct: 243 DGVYHLIDVISRDNRLLYQFEDVKHGDGLKRYWINDNMYYYYYDNTLVNVETPQKVGNIE 302

Query: 120 ERQRRKTQHKALTAFDI------ISSEDVSELSNELGISEDK--LTYAVMEVISKRK 168
             +R KTQ K + AFDI        + D + ++   G  + K  LTY + + IS+R+
Sbjct: 303 PAKRDKTQDKKILAFDIETFQVPTGNGDSTMIAYACGFYDGKKSLTYYISDFISQRE 359



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45406534
Number of Sequences: 457798
Number of extensions: 1745690
Number of successful extensions: 5082
Number of sequences better than 1.0e-02: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5081
Number of HSP's gapped (non-prelim): 2
length of query: 173
length of database: 140,871,481
effective HSP length: 56
effective length of query: 117
effective length of database: 115,234,793
effective search space: 13482470781
effective search space used: 13482470781
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 93 (40.6 bits)