Score E
Sequences producing significant alignments: (bits) Value
gb|AAD21912.1| (AF085222) putative primase [Streptococcus t... 395 e-109
gi|2444093 (U88974) ORF13 [Streptococcus thermophilus tempe... 395 e-109
gi|4049997 (AF077306) putative primase; gp506 [Streptococcu... 393 e-108
gi|2352442 (AF004379) orf382 [Streptococcus thermophilus ba... 356 2e-97
pir||S42061 hypothetical protein 2 - Streptococcus thermoph... 317 1e-85
emb|CAB46558.1| (AJ242479) putative DNA primase [Streptococ... 201 9e-51
emb|CAA90741| (Z50864) DNA primase [Lactobacillus delbrueckii] 161 1e-38
gi|1345114 (U36383) ORF904; Method: conceptual translation... 83 5e-15
gb|AAF27348.1|AF198256_2 (AF198256) phage phi-R73 primase-l... 82 1e-14
emb|CAA07134.1| (AJ006589) gp9a [Bacteriophage phi-C31] 74 4e-12
gi|1930088 (U93082) helicase-like protein; ORF980 [Sulfolob... 70 4e-11
emb|CAA12526.1| (AJ225333) primase [Acidianus ambivalens] 69 7e-11
emb|CAA19404| (AL023797) putative ATP binding protein [Stre... 62 9e-09
emb|CAB63672.1| (AJ251789) hypothetical protein [Lactobacil... 62 1e-08
emb|CAB52501.1| (AJ131519) putative DNA-polymerase or DNA-p... 58 2e-07
dbj|BAA36668.1| (AB016282) ORF11 [bacteriophage phi-105] 55 1e-06
sp|P10277|PRIM_BPP4 PUTATIVE P4-SPECIFIC DNA PRIMASE >gi|75... 54 3e-06
pir||C41830 DNA primase - phage phi-R73 53 4e-06
pir||S38921 hypothetical protein 9 - phage phi-C31 >gi|4326... 49 9e-05
gi|2352444 (AF004379) orf109 [Streptococcus thermophilus ba... 48 3e-04
pir||S38922 hypothetical protein 10 - phage phi-C31 >gi|579... 48 3e-04
gb|AAD21912.1| (AF085222) putative primase [Streptococcus thermophilus
bacteriophage DT1]
Length = 504
Score = 395 bits (1005), Expect = e-109
Identities = 214/474 (45%), Positives = 298/474 (62%), Gaps = 22/474 (4%)
Query: 74 VKKLFFEHRNLFLSTPKE---DGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPE 130
+K +RN + KE D PK+L L A+ + K VI L++ G + +Y+PE
Sbjct: 29 IKNKLKAYRNDWFEKFKEENPDSKEPKALPELAVAKGLNKYTHVITLEN--GKVAIYDPE 86
Query: 131 LGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTE-----------AHL 179
G Y+ + + ++LIY LEP++++ + + VLF L ++ +
Sbjct: 87 RGYYQKDYRYAYQLIYILEPTFNETKCRNVLFLLSNMSREYEYNNMYMDFEPEYRDVRRF 146
Query: 180 IPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKEL 239
I V NGI++K+ ++L F K++ STI T+ + A P INGW+VD WLLDLMSGD EL
Sbjct: 147 ILVKNGIYDKRKKKLLSFDHKFINFSTIETELVENAPKPIINGWDVDSWLLDLMSGDSEL 206
Query: 240 VSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERF 299
V LLWQ+I+AS NGN+SYRK +WLVG GNDGKGTFQ LI NL+G +NVA +K QF+ERF
Sbjct: 207 VELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKINQFSERF 266
Query: 300 ALSQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
L+ + GKT IIGDD Q Y+D + N+ SVVTG+PV IE KG+ P LA F K VIQSTN
Sbjct: 267 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTN 326
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKF 418
+P F+NKSNGTYRR++I+PF+K+F ++D+W IKDDYI RK+VLEYVL A++L+F+KF
Sbjct: 327 AMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRKEVLEYVLWKAINLDFDKF 386
Query: 419 DEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKR 478
+EPKATQ + +FK N+ V F+N+ + VS +P F+ +YR+WC + K
Sbjct: 387 NEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPKKS 446
Query: 479 EFENKLPDYVKDQWKKTVQRPNSAGFNRAVDLHRANEMELFRRLFYWDDEKHKK 532
FE +L + W K Q+P FN D + + F F WD+ + KK
Sbjct: 447 NFEKELAQNLPVGWIKDRQKPLDF-FNPTKD--KPDYWHDFN--FNWDENEAKK 495
gi|2444093 (U88974) ORF13 [Streptococcus thermophilus temperate bacteriophage
O1205]
Length = 504
Score = 395 bits (1003), Expect = e-109
Identities = 215/478 (44%), Positives = 297/478 (61%), Gaps = 30/478 (6%)
Query: 74 VKKLFFEHRNLFLSTPKE---DGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPE 130
+K +RN + KE D PK+L L A+ + K VI L++ G + +Y+PE
Sbjct: 29 IKNKLKAYRNDWFEKFKEENPDKKEPKALPELAVAKGLNKYTHVITLEN--GKVAIYDPE 86
Query: 131 LGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTE-----------AHL 179
G Y+ + + ++LIY LEP++++ + + VLF L ++ +
Sbjct: 87 RGYYQKDYRYAYQLIYVLEPTFNETKCRNVLFLLSNMSREYEYNNMYMDFEPEYRDVRRF 146
Query: 180 IPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKEL 239
I V NGI++K+ ++L F K++ STI T+ + A P INGW+VD WLLDLMSGD EL
Sbjct: 147 ILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSEL 206
Query: 240 VSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERF 299
V LLWQ+I+AS NGN+SYRK +WLVG GNDGKGTFQ LI NL+G +NVA +K QF+ERF
Sbjct: 207 VELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF 266
Query: 300 ALSQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
L+ + GKT IIGDD Q Y+D + N+ SVVTG+PV IE KG+ P LA F K VIQSTN
Sbjct: 267 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTN 326
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKF 418
+P F+NKSNGTYRR++I+PF+K+F ++D+W IKDDYI RK+VLEYVL A++L+F+KF
Sbjct: 327 AMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRKEVLEYVLWKAINLDFDKF 386
Query: 419 DEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKR 478
EPKATQ + +FK N+ V F+N+ + VS +P F+ +YR+WC + K
Sbjct: 387 SEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPKKS 446
Query: 479 EFENKLPDYVKDQWKKTVQRPNSAGFN----RAVDLHRANEMELFRRLFYWDDEKHKK 532
FE +L + W K Q+P FN + V H N F WD+ + KK
Sbjct: 447 NFEKELAQNLPVGWIKDRQKPLDF-FNPTKDKPVYWHDFN--------FNWDENEAKK 495
gi|4049997 (AF077306) putative primase; gp506 [Streptococcus thermophilus
bacteriophage Sfi19]
>gi|5524021|gb|AAD44074.1|AF115102_33 (AF115102) orf508
gp [Streptococcus thermophilus bacteriophage Sfi19]
Length = 506
Score = 393 bits (1000), Expect = e-108
Identities = 205/441 (46%), Positives = 284/441 (63%), Gaps = 17/441 (3%)
Query: 74 VKKLFFEHRNLFLSTPKE---DGNAPKSLSPLDTARIIYKTLKVIKLDHQSGLLGVYNPE 130
+K +RN + KE D PK+L L A+ + K VI L++ G + +Y+PE
Sbjct: 31 IKNKLKAYRNDWFEKFKEENPDKKEPKALPELAVAKGLNKYTHVITLEN--GKVAIYDPE 88
Query: 131 LGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTE-----------AHL 179
G Y+ + + ++LIY LEP++++ + + VLF L ++ +
Sbjct: 89 RGYYQKDYRYAYQLIYVLEPTFNETKCRNVLFLLSNMSREYEYNNMYMDFEPEYRDVRRF 148
Query: 180 IPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKEL 239
I V NGI++K+ ++L F K++ STI T+ + A P INGW+VD WLLDLMSGD EL
Sbjct: 149 ILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSEL 208
Query: 240 VSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERF 299
V LLWQ+I+AS NGN+SYRK +WLVG GNDGKGTFQ LI NL+G +NVA +K QF+ERF
Sbjct: 209 VELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF 268
Query: 300 ALSQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
L+ + GKT IIGDD Q Y+D + N+ SVVTG+PV IE KG+ P LA F K VIQSTN
Sbjct: 269 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTN 328
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKF 418
+P F+NKSNGTYRR++I+PF+K+F ++D+W IKDDYI RK+VLEYVL A++L+F+KF
Sbjct: 329 AMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRKEVLEYVLWKAINLDFDKF 388
Query: 419 DEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKR 478
EPKATQ + +FK N+ V F+N+ + VS +P F+ +YR+WC + K
Sbjct: 389 SEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPKKS 448
Query: 479 EFENKLPDYVKDQWKKTVQRP 499
FE +L + W K Q+P
Sbjct: 449 NFEKELAQNLPVGWIKDRQKP 469
gi|2352442 (AF004379) orf382 [Streptococcus thermophilus bacteriophage Sfi21]
>gi|5524055|gb|AAD44107.1|AF115103_37 (AF115103) orf382
gp [Streptococcus thermophilus bacteriophage Sfi21]
Length = 382
Score = 356 bits (905), Expect = 2e-97
Identities = 184/358 (51%), Positives = 241/358 (66%), Gaps = 14/358 (3%)
Query: 180 IPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKEL 239
I V NGI++K+ ++L F K++ STI T+ + A P INGW+VD WLLDLMSGD EL
Sbjct: 25 ILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSEL 84
Query: 240 VSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERF 299
V LLWQ+I+AS NGN+SYRK +WLVG GNDGKGTFQ LI NL+G +NVA +K QF+ERF
Sbjct: 85 VELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF 144
Query: 300 ALSQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
L+ + GKT IIGDD Q Y+D + N+ SVVTG+PV IE KG+ P LA F K VIQSTN
Sbjct: 145 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTN 204
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKF 418
+P F+NKSNGTYRR++I+PF+K+F ++D+W IKDDYI RK+VLEYVL A++L+F+KF
Sbjct: 205 AMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRKEVLEYVLWKAINLDFDKF 264
Query: 419 DEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKR 478
EPKATQ + +FK N+ V F+N+ + VS +P F+ +YR+WC + K
Sbjct: 265 SEPKATQERMQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPKKS 324
Query: 479 EFENKLPDYVKDQWKKTVQRPNSAGFN----RAVDLHRANEMELFRRLFYWDDEKHKK 532
FE +L + W K Q+P FN + V H N F WD+ + KK
Sbjct: 325 NFEKELAQNLPVGWIKDRQKPLDF-FNPTKDKPVYWHDFN--------FNWDENEAKK 373
pir||S42061 hypothetical protein 2 - Streptococcus thermophilus
>gi|455528|emb|CAA54618| (X77469) ORF2 [Streptococcus
thermophilus bacteriophage SFi18]
Length = 277
Score = 317 bits (804), Expect = 1e-85
Identities = 153/253 (60%), Positives = 195/253 (76%), Gaps = 1/253 (0%)
Query: 180 IPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKEL 239
I V NGI++K+ ++L F K++ STI T+ + A P INGW+VD WLLDLMSGD EL
Sbjct: 25 ILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWLLDLMSGDSEL 84
Query: 240 VSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERF 299
V LLWQ+I+AS NGN+SYRK +WLVG GNDGKGTFQ LI NL+G +NVA +K QF+ERF
Sbjct: 85 VELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKNVAPLKLNQFSERF 144
Query: 300 ALSQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
L+ + GKT IIGDD Q Y+D + N+ SVVTG+PV IE KG+ P LA F K VIQSTN
Sbjct: 145 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYLAQFKKTVIQSTN 204
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKF 418
+P F+NKSNGTYRR++I+PF+K+F ++D+W IKDDYI RK+VLEYVL A++L+F+KF
Sbjct: 205 AMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIKDDYINRKEVLEYVLWKAINLDFDKF 264
Query: 419 DEPKATQGLLDDF 431
EPKATQ + +F
Sbjct: 265 SEPKATQERMQEF 277
emb|CAB46558.1| (AJ242479) putative DNA primase [Streptococcus thermophilus]
Length = 556
Score = 201 bits (507), Expect = 9e-51
Identities = 137/471 (29%), Positives = 231/471 (48%), Gaps = 34/471 (7%)
Query: 25 EDFTDYGEDGKKVVNVAGYQECLKDW-------LEQEKEI---------INSPDYVKAHT 68
E++ + ++ + + GY + KD LEQ+KEI +N+P +
Sbjct: 14 EEYNESKKEASTLFDEDGYLKTFKDIRKQFINILEQKKEIAYQKGYDLYMNNPKVLLKLA 73
Query: 69 QTLRAVKKLFFEHRNLFLSTPKEDGNAPKSLSP---LDTARIIYKTLKVIKL----DHQS 121
+ + + + + KE A K+ +P L+ A + K ++ I++ +
Sbjct: 74 KAEKDEENGELIRKTVIEDAKKEGEKAKKNATPKTPLECAEFLKKYIRFIRIRPKGKGRE 133
Query: 122 GLLGVYNPELGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTEAHLIP 181
L LGIY ++ F H L+ + P+ ++ + L+K+ +K + + + +
Sbjct: 134 RLYTFTRQILGIYLEDDEFLHDLMVTIHPNNTERLGNDALYKIAHSVPLKDK--QENYVV 191
Query: 182 VANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKELVS 241
V ++N +T + F P+ + T + YN A P I+GW WL L +GD++
Sbjct: 192 VGGELYNNETGEFTQFDPRIIVTRKVRMGYNPDATEPIIDGWKPTVWLKGLFNGDRDSYD 251
Query: 242 LLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFAL 301
L QII A+ G + WL G+G GKGTFQ+L+ NL+G ENVAS K + + +F
Sbjct: 252 LAIQIIRATITGK-TLENIFWLYGEGGTGKGTFQTLLENLVGSENVASFKIDGASGKFDT 310
Query: 302 SQVVGKTCIIGDDSQVS-YLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFL 360
S ++GKT +IGDD Q + + FS+ TGDP+ IE KGK+P V+QS+N
Sbjct: 311 SILIGKTVVIGDDIQKDVVIKDTSVVFSLATGDPIRIEDKGKRPYTTRKRMTVVQSSNGF 370
Query: 361 PKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKFDE 420
P+ RR ++ F S D +IK+DY+ RK+VLEY +K+A+ F +
Sbjct: 371 PRMNADQKAINRRFRVLTF--SELKGKADKRIKNDYVGRKEVLEYFVKLAIETPFRDVNP 428
Query: 421 PKATQGLLDDFKISN---DNVLAFVNDMFEEFVSDFLPTAFISALYRAWCE 468
K+ + L + +K N D V F ND E +++P ++ ++A+CE
Sbjct: 429 QKSIEFLDEAYKEMNPVADFVDRFFND--EVIKCNYVPNGYVFECFKAYCE 477
emb|CAA90741| (Z50864) DNA primase [Lactobacillus delbrueckii]
Length = 598
Score = 161 bits (403), Expect = 1e-38
Identities = 117/394 (29%), Positives = 193/394 (48%), Gaps = 35/394 (8%)
Query: 127 YNPELGIYETNENFFHRLIYWLEPSYSQARSKEVLFKLETLAEVKQQTTEAHLIPVANGI 186
YNP+ +Y+ + +L+ +E + ++ +V + ++ T IP NG+
Sbjct: 162 YNPKTKLYDKSRKSIEKLMLCVENTLTERARNDVYEWIRVESDTLAYVTNPRFIPFRNGV 221
Query: 187 FNKKTQQLEPFSPKYVFTSTIATKYNDKA-KVPNING--WNVDGWL--LDLMSG--DKEL 239
++ + +L PFSPK+ F + YN KA + P W + W+ L + G D+
Sbjct: 222 YDMQQHKLTPFSPKHPFLYKLPFDYNPKATQEPEFGSKHWKLSKWINALSMSDGYFDENK 281
Query: 240 VSLLWQIISASTN-----GNYSYRKGVWLV--GKGNDGKGTFQSLIMNLIGRENVASVKA 292
L+WQI++ + + G+ ++ WL+ G G GKGTFQ+LI NL G NV S+K
Sbjct: 282 NKLIWQILACALHLHSPAGDLAF----WLIDNGHGRSGKGTFQALITNLAGVNNVGSLKI 337
Query: 293 EQFAERFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKL 352
+F RF + ++ K +IGDD+ +Y+ + N+ S VT D V +E KGKQ L
Sbjct: 338 AEFGHRFRTAALL-KPVVIGDDNPPTYISDNSNFRSAVTHDQVFVETKGKQGYDIYPRSL 396
Query: 353 VIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEYV-LKI-- 409
+IQS N PKF++ + RR ++ F F D IK Y++ +LE++ LKI
Sbjct: 397 IIQSMNNFPKFKDTTFANLRRQRVIKFNHEFKEGEFDPNIKGKYMQDPKLLEWLALKIIT 456
Query: 410 ---ALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFE-EFVSDFLPTAFISALYRA 465
A +L+ + + LL+ + ND V F +++ + S T + ++ A
Sbjct: 457 EEEAGNLDIDNIVNTSESDELLEGMQRDNDPVFNFASELLTGDIKSTVFSTDLMYNIFLA 516
Query: 466 WCEDE-----GVKPFTKREFENKLPDYV-KDQWK 493
W ED ++P R F+N+L V K WK
Sbjct: 517 WNEDSEHVSINMRP---RRFKNELKQSVEKLGWK 547
gi|1345114 (U36383) ORF904; Method: conceptual translation supplied by author
[Sulfolobus islandicus]
Length = 904
Score = 83.1 bits (202), Expect = 5e-15
Identities = 71/332 (21%), Positives = 145/332 (43%), Gaps = 27/332 (8%)
Query: 166 TLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKA--KVPNINGW 223
T +VK++T + + + +N K +++E F+ K + I + W
Sbjct: 493 TWYDVKERTPKVYSFNYVD--WNLKIEEIEKFNMKEITVEDIENLARRVCPRSLETFKQW 550
Query: 224 NVDGWLLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIG 283
D W+L L+++I + Y + K + L G G +GK TF +L++ ++G
Sbjct: 551 VDDKWVL------------LFEVIGYTFYPKYIFNKAILLTGAGANGKSTFLNLLLKILG 598
Query: 284 RENVASVKAEQFAE--RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKG 341
++NV+++ ++ E RFA ++ K + + + N + + D + + K
Sbjct: 599 QKNVSAMPLKRIMESDRFASIELFHKLANVSSELFAFKITNTDLFKKLTGEDYIEGQKKF 658
Query: 342 KQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKD 401
+ P + + +TN LP ++S G +RR +++ F F D + + + +
Sbjct: 659 RDPIYFINYAKLFNATNELPVVSDQSYGFWRRWIVIEFPHQFPPDPNFFDKTFTVEEVEG 718
Query: 402 VLEY-VLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSD-------- 452
V+ V+ A L +KFD ++ + + ++ D+V AFV ++ E ++
Sbjct: 719 VITVAVIAFARVLQQKKFDFEDSSANVKELWERKTDSVYAFVKELLETERAEYDPANGDL 778
Query: 453 FLPTAFISALYRAWCEDEGVKPFTKREFENKL 484
F+PT Y W E+ K +K +L
Sbjct: 779 FMPTEDFYQAYLEWSEENDTKAESKAVVTQRL 810
gb|AAF27348.1|AF198256_2 (AF198256) phage phi-R73 primase-like protein [Haemophilus
influenzae]
Length = 589
Score = 81.9 bits (199), Expect = 1e-14
Identities = 59/211 (27%), Positives = 92/211 (42%), Gaps = 5/211 (2%)
Query: 179 LIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDKE 238
LI NG+ N+ T + E + + TS I KY+ +A + D WL + G+K+
Sbjct: 236 LIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPL----FDKWLSFVSDGNKD 291
Query: 239 LVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAER 298
+ ++ A Y+++ + GKG GK F S+ L G +N AS E+F +
Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351
Query: 299 FALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTN 358
LS + KT I+ + Q Y + S+ GD V + + P LV+ N
Sbjct: 352 RGLSGLENKTLILCPE-QSKYAGDGSGLKSITGGDTVRVRYNYQDPFDVKITALVMLINN 410
Query: 359 FLPKFRNKSNGTYRRLLIVPFEKSFTADNDD 389
F +S G RR +I F+K D D
Sbjct: 411 RPCSFTERSGGVDRRRVIFDFKKIVPEDERD 441
emb|CAA07134.1| (AJ006589) gp9a [Bacteriophage phi-C31]
Length = 720
Score = 73.7 bits (178), Expect = 4e-12
Identities = 64/315 (20%), Positives = 140/315 (44%), Gaps = 17/315 (5%)
Query: 169 EVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGW 228
E ++ AHL+ ANG+ + +T +L + T ++ +Y+ A+ P W + +
Sbjct: 362 EAEEFDANAHLLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPR---W--EQF 416
Query: 229 LLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVA 288
L ++ + +LV + +++ GN S + L GKG +GK F + ++ GR
Sbjct: 417 LQEIFPNNADLVGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKT 476
Query: 289 SVKAEQFAER-------FALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKG 341
+ A F ++ L+ + G ++ + + + V D V
Sbjct: 477 TPFA-TFEDKGNGGGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLR 535
Query: 342 KQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKD 401
++ L++ +TN PKF+++ G +RR+ ++PF + F + D+ + D ++ +
Sbjct: 536 QEFFTFAPTFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDL-DRKLRAES 594
Query: 402 --VLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEF-VSDFLPTAF 458
++ + ++ A+ +P++ +++ ++D + F + + S + A
Sbjct: 595 AGIVAWAVRGAVEWYANGLGDPESISTATREYRATSDALAGFFPGVLDAADDSAIVSGAD 654
Query: 459 ISALYRAWCEDEGVK 473
YR WCE EG+K
Sbjct: 655 AYNSYRDWCEAEGLK 669
gi|1930088 (U93082) helicase-like protein; ORF980 [Sulfolobus islandicus]
Length = 979
Score = 70.2 bits (169), Expect = 4e-11
Identities = 60/259 (23%), Positives = 125/259 (48%), Gaps = 15/259 (5%)
Query: 243 LWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE---RF 299
L++II + ++ L+G + GK TF L+ ++G++N S++ + + RF
Sbjct: 548 LFEIIGYTLYPATKFKLAFMLLGPRDSGKSTFLQLLKRILGKQNTVSIRLRELFDPNNRF 607
Query: 300 ALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQP-TLAVFNKLVIQSTN 358
+ K + +++ +++ + ++ GD + + K K P T + KL+I S N
Sbjct: 608 VAGFLFHKLVNLTAETKEYTIEDIDRFKTLTGGDQITSDVKFKGPITFTPYAKLIIAS-N 666
Query: 359 FLPKFRNKSNGTY-RRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEY-VLKIALSLNFE 416
LP R+K++ + RR LI+ F F D++ ++ + + +L +L A ++
Sbjct: 667 KLPDIRDKNDTAFWRRWLIIEFPNQFPNDDNWFRQTFTEEEIEGILTVSILAFARVMSRG 726
Query: 417 KFDEPKATQGLLDDFKISNDNVLAFVNDMFEE-FVSD-------FLPTAFISALYRAWCE 468
+FD + + + D + + D+V +FV ++ F++ ++P + LY+ +C
Sbjct: 727 QFDYQQTPEEVRDLWLYNIDSVWSFVRTYEKKGFITVDPRNADLWVPRIELYKLYKDYCM 786
Query: 469 DEGVKPFTKREFENKLPDY 487
D G + + F NKL Y
Sbjct: 787 DNGFPGVSLKTFANKLNKY 805
emb|CAA12526.1| (AJ225333) primase [Acidianus ambivalens]
Length = 909
Score = 69.5 bits (167), Expect = 7e-11
Identities = 78/351 (22%), Positives = 153/351 (43%), Gaps = 45/351 (12%)
Query: 158 KEVLFKLETLAEVKQQTTEAHLIP--VANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKA 215
KE +FKL E ++ H IP + + +FN PF + +A K ++
Sbjct: 483 KENIFKLIPANERTEEHYSFHYIPHKIRDEVFNNTPL---PFQVSEL--EDLARKLCPRS 537
Query: 216 KVPNINGWNVDGWLLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQ 275
+ W D W+ L++II + + L+G + GK TF
Sbjct: 538 -LDTFKQWAGDKWIT------------LFEIIGYTLYPATKIKLAFMLLGPRDSGKSTFL 584
Query: 276 SLIMNLIGRENVASVKAEQFAE---RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTG 332
L+ ++G+ N S++ ++ + RF + + K + +++ +++ + ++ G
Sbjct: 585 QLLKKILGKHNTVSIRVKELFDSNNRFVMGYLFHKLANLTAETKEYTINDIDRFKTLTGG 644
Query: 333 DPVPIEAKGKQP-TLAVFNKLVIQSTNFLPKFRNKSN-GTYRRLLIVPFEKSFTADNDDW 390
D V + K P T + K++I S N LP +K++ +RR LI+ F +F D D+W
Sbjct: 645 DQVTSDVKFNGPITFTPYAKIIIAS-NKLPNVSDKNDMAFWRRWLIIEFPNTFPND-DNW 702
Query: 391 ------KIKDDYIKRKDVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVND 444
+ + + I +L + ++ ++ F+ P+ +GL + + D+V +F+
Sbjct: 703 FRQTFTEEEIEGILTVSILAFA-RVIINGKFDYQQTPEEVRGL---WLNNIDSVWSFIKT 758
Query: 445 MFEEFVSD--------FLPTAFISALYRAWCEDEGVKPFTKREFENKLPDY 487
E+ + ++P + LY+ +C D G + R F NKL Y
Sbjct: 759 YVEKGIITLDPRNADLWVPRKELYNLYKEYCLDNGFPGVSLRTFANKLNKY 809
emb|CAA19404| (AL023797) putative ATP binding protein [Streptomyces coelicolor]
Length = 756
Score = 62.5 bits (149), Expect = 9e-09
Identities = 69/340 (20%), Positives = 140/340 (40%), Gaps = 34/340 (10%)
Query: 150 PSYSQARSK-EVLFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIA 208
P S A ++ V+ +ET E+ + H + V NG+ + +T +L P KY+ T
Sbjct: 386 PGISAALNEASVMLPIET--EISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTRGTT 443
Query: 209 TKYNDKAKVP---NINGWNVDGWLLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVG 265
+Y+ A P + GW GD E++ + ++ GN +++ +L G
Sbjct: 444 VEYDPNADCPMWMDFLGW--------AFQGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYG 495
Query: 266 KGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFA-----LSQVVGKTCIIGDDSQVSYL 320
G GK T ++ L+G + S F E + L+++ G ++ +++
Sbjct: 496 PGRSGKTTLTRVLSRLLG-DYATSADLSVFNESSSGHNEPLARLAGARLVVFSETRQGQR 554
Query: 321 DNAGNYFSVVTGDPVPIEAKGKQ--PTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVP 378
N + D + K K L F ++ + F +G RR+ ++P
Sbjct: 555 INEAQFKKFTGEDTLTASYKNKSWFEFLPAFTPVMFGNAQPSIAF---DSGVERRMKVIP 611
Query: 379 FEKSFTADNDDWKIKDDYIKRKD--VLEYVLKIALSLNFEKF--DEPKATQGLLDDFKIS 434
+ + K+ + + + ++ + ++ A E F D P+ Q + ++K
Sbjct: 612 MRAQISDGQKNPKLVEQMMLNEGPAIMAWAVEGARLTAAESFVPDPPQVAQA-VKEYKRE 670
Query: 435 NDNVLAFVND--MFEEFVSDFLPTAFISALYRAWCEDEGV 472
ND++ F+ + +F+E + + + + Y W E GV
Sbjct: 671 NDHIGDFIEECLVFDEGAT--VASDVVWGRYSKWIEAGGV 708
emb|CAB63672.1| (AJ251789) hypothetical protein [Lactobacillus casei bacteriophage
A2]
Length = 770
Score = 62.1 bits (148), Expect = 1e-08
Identities = 68/341 (19%), Positives = 130/341 (37%), Gaps = 22/341 (6%)
Query: 151 SYSQARSKEVLFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATK 210
S +A ++++ +L + E + + L+ NG + +L K +F+ +
Sbjct: 406 SAKKAMTEQLRHRLAVMPE--EFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVE 463
Query: 211 YNDKAKVPNINGWNVDGWLLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDG 270
Y D P W +L + D+EL+ L + I S G+ + L G G +G
Sbjct: 464 YTDTVDSPE---WRQ--FLDQIFDHDEELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNG 518
Query: 271 KGTFQSLIMNLIG------RENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYLDNAG 324
K F + ++ G +K A ++++ G + + + G
Sbjct: 519 KSVFMDTLKHVAGSYAKSMSAKSIMIKQSDSAANSDIARLKGARLVTASEPNEGVRLDEG 578
Query: 325 NYFSVVTGDPVPIE-AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSF 383
+ GD V G + KL + +TN P R +G +RRL+++PF
Sbjct: 579 LVKELTGGDMVTARFLYGSEFEYKPEFKLWL-ATNHKPIIRGTDDGIWRRLMLIPFNVQI 637
Query: 384 TADNDD----WKIKDDYIKRKDVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISNDNVL 439
+ D +K++ + + +L + + AL E P + Q ++ D +
Sbjct: 638 PENKVDKRLAYKLERESV---GILNWAVDGALKWQREGLKAPASVQAASKSYRAEMDTLE 694
Query: 440 AFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREF 480
FV D + P + Y++W E G K++F
Sbjct: 695 LFVRDCCDLRPDYQAPAGELFKAYQSWAESNGEYKMRKQKF 735
emb|CAB52501.1| (AJ131519) putative DNA-polymerase or DNA-primase [Lactobacillus
bacteriophage phi adh]
Length = 771
Score = 58.2 bits (138), Expect = 2e-07
Identities = 87/370 (23%), Positives = 149/370 (39%), Gaps = 43/370 (11%)
Query: 149 EPSYSQARSKEVLFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIA 208
E Y +A K + ++V HL+PV + ++++ L +P T
Sbjct: 387 EDDYKKAWKKFEKRERSRSSKVNMVNEIKHLVPVLHNQWDQEHMLLN--TPSGYIDLTNG 444
Query: 209 TKYNDKAKVPNINGWNVD-----------GWLLDLMSGDKELVSLLWQIISASTNGNYSY 257
T +N K VD +L D+EL+ + +II S G+ +
Sbjct: 445 TLHNHKYNKMFTQETGVDFSENVDCPLWIKFLNQTFQNDQELIHFVQKIIGYSLTGSNAE 504
Query: 258 RKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCII----GD 313
+K L G G +GK +++ + G +R SQ G T I G
Sbjct: 505 QKMFILYGNGRNGKSVLLNIVKYIFGSYAKTMNATTIMQKRIGSSQ--GATSDIARLEGA 562
Query: 314 DSQVSYLDNAGNYFS------VVTGDPVPIEAK-GKQPTLAVFNKLVIQSTNFLPKFRNK 366
VS N G+ + GD + + GK KL + +TN PK
Sbjct: 563 RLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFDPVFKLFM-ATNHKPKIYGT 621
Query: 367 SNGTYRRLLIVPFEKSFTADNDDWKIKDDY-IKRKDVLEYVLKIALSLNFEKFDEPKATQ 425
G +RRL+I+PF + +N D K++D + +L++ ++ A+ E + P Q
Sbjct: 622 DEGIWRRLVIIPFTHTVKKENVDKKLEDKLKAESMGILKWAIEGAMMWQSEGLNPPDVIQ 681
Query: 426 GLLDDFKISNDNVLAFVND--MFEEFVSDFLPTAFISALYRAWCED----EGV------K 473
++++ D + AF+++ + + LPT ++ A Y+ W + EG+ K
Sbjct: 682 NAGNEYRKEMDVIEAFIDECCVTNDSYKVKLPT-YLDA-YKNWANETNNWEGMNNTKFGK 739
Query: 474 PFTKREFENK 483
TKR FE K
Sbjct: 740 EITKR-FERK 748
dbj|BAA36668.1| (AB016282) ORF11 [bacteriophage phi-105]
Length = 806
Score = 55.4 bits (131), Expect = 1e-06
Identities = 56/280 (20%), Positives = 111/280 (39%), Gaps = 13/280 (4%)
Query: 167 LAEVKQQTTEAH--LIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWN 224
+ V++Q ++H L NG+ + KT L P +FT Y A PN +
Sbjct: 420 MVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKISPVAYEKDADCPNWKAFM 479
Query: 225 VDGWLLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIG- 283
++ + + + E++ L + I S G + + +L G G +GK TF + + L+G
Sbjct: 480 ESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNGRNGKSTFINTVQQLLGD 539
Query: 284 -----RENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIE 338
+ K + ++++ G + +S+ + + G+ +
Sbjct: 540 YGRQTNSDTFIKKKNDSSINNDIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSAR 599
Query: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDY-I 397
++ V +TN P + G +RR+ +VPF + + D ++
Sbjct: 600 FLRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVDKQLPQKLAA 659
Query: 398 KRKDVLEYVLKIALSLNFEKFDEP----KATQGLLDDFKI 433
+ +L + ++ L E EP KAT+G +D I
Sbjct: 660 EMPGILRWAVEGCLMWQKEGLTEPEDIRKATEGYREDMDI 699
sp|P10277|PRIM_BPP4 PUTATIVE P4-SPECIFIC DNA PRIMASE >gi|75895|pir||RPBPP4 DNA primase
- satellite phage P4 >gi|15152|emb|CAA29111| (X05623)
alpha gene (pot.P4-specific DNA primase ) (AA 1-777)
[Bacteriophage P4] >gi|15158|emb|CAA35898| (X51522)
alpha gene product (AA 1-777) [Bacteriophage P4]
Length = 777
Score = 54.3 bits (128), Expect = 3e-06
Identities = 56/296 (18%), Positives = 111/296 (36%), Gaps = 21/296 (7%)
Query: 148 LEPSYSQARSKEVLFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTI 207
L +S + V+ L+ + +Q+ LI NG+ + + P SP + +
Sbjct: 383 LRAPFSSGKVASVVDTLKLIIP-QQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLC 441
Query: 208 ATKYNDKAKVPNINGWNVDG-------WLLDLMSGDKELVSLLWQIISASTNGNYSYRKG 260
+ P ++G ++ WL G E ++ + Y ++
Sbjct: 442 DVDFT-----PPVDGETLETHAPAFWRWLDRAAGGRAEKRDVILAALFMVLANRYDWQLF 496
Query: 261 VWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYL 320
+ + G G GK + L G +N S E + + G + I D +
Sbjct: 497 LEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSG 556
Query: 321 DNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFE 380
D AG ++ GD V ++ K + +++ N +F ++S G RR +I+ F
Sbjct: 557 DGAG-LKAITGGDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFP 615
Query: 381 KSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISND 436
+ D ++KD + L + + +KF +P + LL + S++
Sbjct: 616 EQIAPQERDPQLKDKITRE-------LAVIVRHLMQKFSDPMLARSLLQSQQNSDE 664
pir||C41830 DNA primase - phage phi-R73
Length = 777
Score = 53.5 bits (126), Expect = 4e-06
Identities = 56/296 (18%), Positives = 110/296 (36%), Gaps = 21/296 (7%)
Query: 148 LEPSYSQARSKEVLFKLETLAEVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTI 207
L +S + V+ L+ + +Q+ LI NG+ + + P SP + +
Sbjct: 383 LRAPFSSGKVASVVDTLKLIIP-QQEAPSRRLIGFRNGVLDTQNGTFHPHSPSHWMRTLC 441
Query: 208 ATKYNDKAKVPNINGWNVDG-------WLLDLMSGDKELVSLLWQIISASTNGNYSYRKG 260
+ P + G ++ WL G E ++ + Y ++
Sbjct: 442 DVDFT-----PPVEGETLETHAPAFWRWLDRAAGGCAEKRDVILAALFMVLANRYDWQLF 496
Query: 261 VWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAERFALSQVVGKTCIIGDDSQVSYL 320
+ + G G GK + L G +N S E + + G + I D +
Sbjct: 497 LEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLESPRERAALTGFSLIRLPDQEKWSG 556
Query: 321 DNAGNYFSVVTGDPVPIEAKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFE 380
D AG ++ GD V ++ K + +++ N +F ++S G RR +I+ F
Sbjct: 557 DGAG-LKAITGGDAVSVDPKYRDAYSTHIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFP 615
Query: 381 KSFTADNDDWKIKDDYIKRKDVLEYVLKIALSLNFEKFDEPKATQGLLDDFKISND 436
+ D ++KD + L + + +KF +P + LL + S++
Sbjct: 616 EQIAPQERDPQLKDKITRE-------LAVIVRHLMQKFSDPMLARSLLQSQQNSDE 664
pir||S38921 hypothetical protein 9 - phage phi-C31 >gi|432620|emb|CAA53920|
(X76288) ORF 9 [Bacteriophage phi-C31]
Length = 519
Score = 49.2 bits (115), Expect = 9e-05
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 169 EVKQQTTEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGW 228
E ++ AHL+ ANG+ + +T +L + T ++ +Y+ A+ P W + +
Sbjct: 362 EAEEFDANAHLLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPR---W--EQF 416
Query: 229 LLDLMSGDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGR 284
L ++ + +LV + +++ GN S + L GKG +GK F + ++ GR
Sbjct: 417 LQEIFPNNADLVGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGR 472
gi|2352444 (AF004379) orf109 [Streptococcus thermophilus bacteriophage Sfi21]
Length = 109
Score = 47.6 bits (111), Expect = 3e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 13/109 (11%)
Query: 428 LDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALYRAWCEDEGVKPFTKREFENKLPDY 487
+ +FK N+ V F+N+ + VS +P F+ +YR+WC + K FE +L
Sbjct: 1 MQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPKKSNFEKELAQN 60
Query: 488 VKDQWKKTVQRPNSAGFN----RAVDLHRANEMELFRRLFYWDDEKHKK 532
+ W K Q+P FN + V H N F WD+ + KK
Sbjct: 61 LPVGWIKDRQKPLDF-FNPTKDKPVYWHDFN--------FNWDENEAKK 100
pir||S38922 hypothetical protein 10 - phage phi-C31 >gi|579075|emb|CAA53906|
(X76288) ORF 10 [Bacteriophage phi-C31]
Length = 202
Score = 47.6 bits (111), Expect = 3e-04
Identities = 28/125 (22%), Positives = 64/125 (50%), Gaps = 4/125 (3%)
Query: 352 LVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKD--VLEYVLKI 409
L++ +TN PKF+++ G +RR+ ++PF + F + D+ + D ++ + ++ + ++
Sbjct: 28 LIMLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDL-DRKLRAESAGIVAWAVRG 86
Query: 410 ALSLNFEKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEF-VSDFLPTAFISALYRAWCE 468
A+ +P++ +++ ++D + F + + S + A YR WCE
Sbjct: 87 AVEWYANGLGDPESISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCE 146
Query: 469 DEGVK 473
EG+K
Sbjct: 147 AEGLK 151
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.317 0.135 0.398
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160726517
Number of Sequences: 457798
Number of extensions: 7210175
Number of successful extensions: 16035
Number of sequences better than 1.0e-02: 21
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15988
Number of HSP's gapped (non-prelim): 27
length of query: 542
length of database: 140,871,481
effective HSP length: 57
effective length of query: 485
effective length of database: 114,776,995
effective search space: 55666842575
effective search space used: 55666842575
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 98 (42.6 bits)