Score E
Sequences producing significant alignments: (bits) Value
emb|CAB59827.1| (AJ012388) hypothetical protein [Lactococcu... 468 e-131
emb|CAB59825.1| (AJ012388) hypothetical protein [Lactococcu... 296 2e-79
sp|P28635|YAEC_ECOLI HYPOTHETICAL 29.4 KD LIPOPROTEIN IN RC... 158 4e-38
pir||A43581 28K outer membrane protein - Haemophilus influe... 157 1e-37
gi|148838 (M59804) 28 3kDa membrane protein [Haemophilus in... 157 1e-37
sp|P31728|HLPA_HAEIN 28 KD OUTER MEMBRANE PROTEIN PRECURSOR... 157 1e-37
gi|294071 (L16627) lipoprotein 3 [Pasteurella haemolytica] 153 2e-36
sp|Q08870|PLPC_PASHA OUTER MEMBRANE LIPOPROTEIN 3 PRECURSOR... 153 2e-36
sp|Q08868|PLPA_PASHA OUTER MEMBRANE LIPOPROTEIN 1 PRECURSOR... 147 9e-35
sp|P04846|NLPA_ECOLI LIPOPROTEIN-28 PRECURSOR >gi|72589|pir... 146 3e-34
sp|Q08869|PLPB_PASHA OUTER MEMBRANE LIPOPROTEIN 2 PRECURSOR... 144 7e-34
emb|CAA06664| (AJ005668) 29 kDa immunogenic protein [Legion... 144 1e-33
gi|294070 (L16627) lipoprotein 2 [Pasteurella haemolytica] 142 3e-33
emb|CAB73036.1| (AL139076) putative periplasmic protein [Ca... 142 4e-33
gb|AAF10930.1|AE001982_4 (AE001982) outer membrane protein ... 140 1e-32
gb|AAF10931.1|AE001982_5 (AE001982) outer membrane protein ... 139 3e-32
gi|2108234 (U97358) 29K protein [Treponema pallidum] >gi|21... 138 7e-32
emb|CAB73037.1| (AL139076) putative periplasmic protein [Ca... 134 6e-31
gi|294069 (L16627) lipoprotein 1 [Pasteurella haemolytica] 133 2e-30
emb|CAB15262| (Z99120) similar to hypothetical proteins [Ba... 128 5e-29
emb|CAB73454.1| (AL139077) putative periplasmic protein [Ca... 119 2e-26
gb|AAD08604.1| (AE000654) outer membrane protein [Helicobac... 114 1e-24
emb|CAB73035.1| (AL139076) putative periplasmic protein [Ca... 113 1e-24
gi|4156104 (AE001569) putative Outer membrane protein [Heli... 112 3e-24
gb|AAD51879.1|AF102556_3 (AF102556) lipoprotein [Salmonella... 110 1e-23
sp|P54594|YHCJ_BACSU HYPOTHETICAL 29.2 KD LIPOPROTEIN IN CS... 104 1e-21
gi|1336657 (U58859) lipoprotein [Bacillus subtilis] 102 3e-21
gb|AAD18427| (AE001613) conserved outer membrane lipoprotei... 88 7e-17
pir||A47040 probable envelope protein - Escherichia coli (f... 71 8e-12
emb|CAB59827.1| (AJ012388) hypothetical protein [Lactococcus lactis]
Length = 286
Score = 468 bits (1191), Expect = e-131
Identities = 230/243 (94%), Positives = 234/243 (95%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
GLMPGGKQED IWKQVQK AKDQFGITLKFVNFTDGD+PNKAL NHEVDLNAFQHYAYLK
Sbjct: 44 GLMPGGKQEDVIWKQVQKNAKDQFGITLKFVNFTDGDEPNKALVNHEVDLNAFQHYAYLK 103
Query: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAG 163
SWNKANNGNIVSIGDTIITPIHLYSTKYK V EIPDKSTIAIPND+TNESRALYVLKNAG
Sbjct: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKKVDEIPDKSTIAIPNDITNESRALYVLKNAG 163
Query: 164 LIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKISEKE 223
LIKLDTSRG LATVKDIR+NPK LIIKEIDASQTPRALDSVAAAVINYNFAISAK S+KE
Sbjct: 164 LIKLDTSRGVLATVKDIRENPKSLIIKEIDASQTPRALDSVAAAVINYNFAISAKNSDKE 223
Query: 224 SIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAWN 283
SIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIAD IKKEYPDGGELPAWN
Sbjct: 224 SIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADIIKKEYPDGGELPAWN 283
Query: 284 LKL 286
LKL
Sbjct: 284 LKL 286
emb|CAB59825.1| (AJ012388) hypothetical protein [Lactococcus lactis]
Length = 287
Score = 296 bits (749), Expect = 2e-79
Identities = 141/287 (49%), Positives = 196/287 (68%), Gaps = 1/287 (0%)
Query: 1 MNPRNRKXXXXXXXXXXXXXXXXXXXXRQGXXXXXXXXXXXXXGLMPGGKQEDAIWKQVQ 60
MNP+NR QG G+M G KQ+ +WK V
Sbjct: 1 MNPKNRNIIIAVAVLILVALVAFFSLNHQGGVKASAGEKTVKVGIMSGDKQDQEVWKSVA 60
Query: 61 KIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTI 120
AK+++ + LKFV F+D +QPN+AL + ++D+NAFQ Y Y+K+WNKA+ +IV++G+T
Sbjct: 61 NTAKEKYDLKLKFVYFSDYNQPNEALLSGDIDINAFQSYNYVKTWNKAHKSDIVAVGNTY 120
Query: 121 ITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGA-LATVKD 179
ITP+H+YS + ++++ + ST+AIPND +NESRAL+VL++AGL+KL TS + L + D
Sbjct: 121 ITPMHIYSKEISKLSDLKEGSTVAIPNDASNESRALFVLQSAGLLKLTTSDSSKLVGLPD 180
Query: 180 IRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKISEKESIYQEPLNEDSAQWIN 239
I +NP L KE+DASQTPRALDSVA +V+NYN+A +A + + ES++ EPLN+ SAQ+IN
Sbjct: 181 ITENPHQLKFKEVDASQTPRALDSVALSVVNYNYATAASLPKSESVFMEPLNKTSAQYIN 240
Query: 240 FIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAWNLKL 286
FIA +KNNKVYKEV KAY K +IK++YPDGGELPAW+LKL
Sbjct: 241 FIATTSKEKNNKVYKEVAKAYASKATEKAIKEQYPDGGELPAWDLKL 287
sp|P28635|YAEC_ECOLI HYPOTHETICAL 29.4 KD LIPOPROTEIN IN RCSF-ABC INTERGENIC REGION
PRECURSOR >gi|303560|dbj|BAA03657| (D15061) ORF271
[Escherichia coli] >gi|1552773 (U70214) hypothetical
[Escherichia coli] >gi|1786396 (AE000129) putative
lipoprotein [Escherichia coli]
>gi|4902940|dbj|BAA77874.1| (D83536) Hypothetical 29.4
kd lipoprotein in rcsF-abc intergenic region precursor.
[Escherichia coli]
Length = 271
Score = 158 bits (396), Expect = 4e-38
Identities = 89/242 (36%), Positives = 145/242 (59%), Gaps = 9/242 (3%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G++ G +Q+ A + QK+AKD++G+ ++ V F D PN+AL+ ++D NAFQH YL
Sbjct: 36 GVIVGAEQQVA--EVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLD 93
Query: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAG 163
K +V++G+T + PI YS K K++ E+ D S +A+PND TN R+L +L+ G
Sbjct: 94 QQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVG 153
Query: 164 LIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALD--SVAAAVINYNFAISAKIS- 220
LIKL G L TV D+ +NPK L I E++A Q PR+LD +A AVIN +A ++
Sbjct: 154 LIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTP 213
Query: 221 EKESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELP 280
K+ I+ E + + ++N I + +K+ + K+ V+AY+ + ++ K + +GG +
Sbjct: 214 AKDGIFVE---DKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVF-NGGAVK 269
Query: 281 AW 282
W
Sbjct: 270 GW 271
pir||A43581 28K outer membrane protein - Haemophilus influenzae
Length = 253
Score = 157 bits (393), Expect = 1e-37
Identities = 85/235 (36%), Positives = 140/235 (59%), Gaps = 7/235 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G + + A + K+AK+++G+ ++FV F D PN+A++ ++D NA QH YL
Sbjct: 19 GVMSGPEHQVA--EIAAKVAKEKYGLDVQFVEFNDYALPNEAVSKGDLDANAMQHKPYLD 76
Query: 104 SWNKANN-GNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNA 162
KA N N+V +G+T + P+ YS K KNV E+ D + + +PND TN RAL +L+
Sbjct: 77 EDAKAKNLNNLVIVGNTFVYPLAGYSKKIKNVNELQDGAKVVVPNDPTNRGRALILLEKQ 136
Query: 163 GLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKI-SE 221
GLIKL + L+TV DI +NPK L I E+D S RALD V AV+N +A + ++
Sbjct: 137 GLIKLKDANNLLSTVLDIVENPKKLNITEVDTSVAARALDDVDLAVVNNTYAGQVGLNAQ 196
Query: 222 KESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDG 276
+ ++ E + + ++N I + +K++K ++ VK+Y+ + + +K + DG
Sbjct: 197 DDGVFVE---DKDSPYVNIIVSRTDNKDSKAVQDFVKSYQTEEVYQEAQKHFKDG 248
gi|148838 (M59804) 28 3kDa membrane protein [Haemophilus influenzae]
Length = 273
Score = 157 bits (393), Expect = 1e-37
Identities = 85/235 (36%), Positives = 140/235 (59%), Gaps = 7/235 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G + + A + K+AK+++G+ ++FV F D PN+A++ ++D NA QH YL
Sbjct: 39 GVMSGPEHQVA--EIAAKVAKEKYGLDVQFVEFNDYALPNEAVSKGDLDANAMQHKPYLD 96
Query: 104 SWNKANN-GNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNA 162
KA N N+V +G+T + P+ YS K KNV E+ D + + +PND TN RAL +L+
Sbjct: 97 EDAKAKNLNNLVIVGNTFVYPLAGYSKKIKNVNELQDGAKVVVPNDPTNRGRALILLEKQ 156
Query: 163 GLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKI-SE 221
GLIKL + L+TV DI +NPK L I E+D S RALD V AV+N +A + ++
Sbjct: 157 GLIKLKDANNLLSTVLDIVENPKKLNITEVDTSVAARALDDVDLAVVNNTYAGQVGLNAQ 216
Query: 222 KESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDG 276
+ ++ E + + ++N I + +K++K ++ VK+Y+ + + +K + DG
Sbjct: 217 DDGVFVE---DKDSPYVNIIVSRTDNKDSKAVQDFVKSYQTEEVYQEAQKHFKDG 268
sp|P31728|HLPA_HAEIN 28 KD OUTER MEMBRANE PROTEIN PRECURSOR >gi|1073783|pir||B64082 28
kDa membrane protein (hlpA) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573614 (U32744) 28 kDa
outer membrane protein (hlpA) [Haemophilus influenzae
Rd]
Length = 273
Score = 157 bits (392), Expect = 1e-37
Identities = 84/235 (35%), Positives = 140/235 (58%), Gaps = 7/235 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G + + A + K+AK+++G+ ++FV F D PN+A++ ++D NA QH YL
Sbjct: 39 GVMSGPEHQVA--EIAAKVAKEKYGLDVQFVEFNDYALPNEAVSKGDLDANAMQHKPYLD 96
Query: 104 SWNKANN-GNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNA 162
KA N N+V +G+T + P+ YS K KNV E+ D + + +PND TN RAL +L+
Sbjct: 97 EDAKAKNLNNLVIVGNTFVYPLAGYSKKIKNVNELQDGAKVVVPNDPTNRGRALILLEKQ 156
Query: 163 GLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKI-SE 221
GLIKL + L+TV DI +NPK L I E+D S RALD V AV+N +A + ++
Sbjct: 157 GLIKLKDANNLLSTVLDIVENPKKLNITEVDTSVAARALDDVDLAVVNNTYAGQVGLNAQ 216
Query: 222 KESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDG 276
+ ++ E + + ++N I + +K++K ++ +K+Y+ + + +K + DG
Sbjct: 217 DDGVFVE---DKDSPYVNIIVSRTDNKDSKAVQDFIKSYQTEEVYQEAQKHFKDG 268
gi|294071 (L16627) lipoprotein 3 [Pasteurella haemolytica]
Length = 259
Score = 153 bits (382), Expect = 2e-36
Identities = 82/231 (35%), Positives = 136/231 (58%), Gaps = 4/231 (1%)
Query: 52 EDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNG 111
E + + KIAK+++ ++ V FTD PN AL ++DLNAFQH YL + +
Sbjct: 33 EHKVMEVAAKIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGY 92
Query: 112 NIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSR 171
+V +G++ + PI YS K K++ E+ D TIA+PND TN +RAL +L+ LIKL
Sbjct: 93 KLVPVGNSFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADA 152
Query: 172 GALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKISEKESIYQEPLN 231
G AT DI +NP+ L+I+EI+A PR LD VA ++IN +A + + I+ E
Sbjct: 153 GLKATSVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGKTVNANQSGIFVE--- 209
Query: 232 EDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ + ++N I A +++++++ K++VKAY+ + + + +E+ G + W
Sbjct: 210 DKDSPYVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEF-KGAMIKGW 259
sp|Q08870|PLPC_PASHA OUTER MEMBRANE LIPOPROTEIN 3 PRECURSOR (PLP3)
>gi|541235|pir||JN0753 outer membrane 29.1K protein -
Pasteurella haemolytica >gi|349532 (L11037) lipoprotein
[Pasteurella haemolytica]
Length = 263
Score = 153 bits (382), Expect = 2e-36
Identities = 84/232 (36%), Positives = 138/232 (59%), Gaps = 5/232 (2%)
Query: 52 EDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNG 111
E + + KIAK+++ ++ V FTD PN AL ++DLNAFQH YL + +
Sbjct: 36 EHKVMEVAAKIAKEKYNRDVELVVFTDYATPNAALDKGDLDLNAFQHKPYLDNQIQEKGY 95
Query: 112 NIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSR 171
+V +G+T + PI YS K K++ E+ D TIA+PND TN +RAL +L+ LIKL
Sbjct: 96 KLVPVGNTFVYPIAAYSKKIKSLAELKDGDTIAVPNDPTNLARALILLEKQDLIKLRADA 155
Query: 172 GALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPL 230
G AT DI +NP+ L+I+EI+A PR LD VA ++IN +A ++ K+ I+ E
Sbjct: 156 GLKATSVDIIENPRKLVIQEIEAPLLPRTLDDVAFSIINTTYAGQNGLTPTKDGIFVE-- 213
Query: 231 NEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ + ++N I A +++++++ K++VKAY+ + + + +E+ G + W
Sbjct: 214 -DKDSPYVNLIVARENNQHSEAVKDLVKAYQTEEVYNKANEEF-KGAMIKGW 263
sp|Q08868|PLPA_PASHA OUTER MEMBRANE LIPOPROTEIN 1 PRECURSOR (PLP1)
>gi|541237|pir||JN0751 Outer membrane 30K protein -
Pasteurella haemolytica >gi|150508 (M91072) lipoprotein
[Pasteurella haemolytica] >gi|349530 (L11037)
lipoprotein [Pasteurella haemolytica]
Length = 277
Score = 147 bits (368), Expect = 9e-35
Identities = 83/235 (35%), Positives = 142/235 (60%), Gaps = 7/235 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G E + ++ +IAK+++G+ ++FV F D PN A++ ++D NAFQH YL
Sbjct: 43 GVMSG--PEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLD 100
Query: 104 SWNKANN-GNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNA 162
+++ N+V +G+T + P+ YS K KNV+E+ + + IA+PND +N +RAL +L+
Sbjct: 101 KDSQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILLEKQ 160
Query: 163 GLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKISEK 222
GLIKL + +T DI +NPK L IKE+D S +ALD V AV+N +A ++ +
Sbjct: 161 GLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAAKALDDVDLAVVNNTYAGQVGLNTQ 220
Query: 223 E-SIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDG 276
+ ++ E ++DS ++N I A Q +K+ + +K+Y+ + + +K + DG
Sbjct: 221 DHGVFVE--SKDS-PYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDG 272
sp|P04846|NLPA_ECOLI LIPOPROTEIN-28 PRECURSOR >gi|72589|pir||LPEC28 lipoprotein-28
precursor - Escherichia coli >gi|146649 (M12163)
lipoprotein-28 precursor [Escherichia coli] >gi|290510
(L10328) lipoprotein-28 [Escherichia coli] >gi|1790093
(AE000443) lipoprotein-28 [Escherichia coli]
Length = 272
Score = 146 bits (364), Expect = 3e-34
Identities = 82/242 (33%), Positives = 143/242 (58%), Gaps = 9/242 (3%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G++ G +Q+ A + +K+AK+++G+ ++ V F+ PN A + E+D N FQH +L+
Sbjct: 37 GVINGAEQDVA--EVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLE 94
Query: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAG 163
N+A+ +V++G+T + P+ YS K K V +I + +T+AIPND TN RAL +L+
Sbjct: 95 QDNQAHGYKLVAVGNTFVFPMAGYSKKIKTVAQIKEGATVAIPNDPTNLGRALLLLQKEK 154
Query: 164 LIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALD--SVAAAVINYNFAISAKISE 221
LI L +G L T DI DNP+ L I E++ +Q PR LD V A+I+ + +S
Sbjct: 155 LITLKEGKGLLPTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSP 214
Query: 222 -KESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELP 280
+S++ E N + ++N + A + +KN + KE +++Y+ +A + + + +GG +P
Sbjct: 215 VHDSVFIEDKN---SPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIF-NGGAVP 270
Query: 281 AW 282
W
Sbjct: 271 GW 272
sp|Q08869|PLPB_PASHA OUTER MEMBRANE LIPOPROTEIN 2 PRECURSOR (PLP2)
>gi|541236|pir||JN0752 outer membrane 30.2K protein -
Pasteurella haemolytica >gi|349531 (L11037) lipoprotein
[Pasteurella haemolytica]
Length = 276
Score = 144 bits (360), Expect = 7e-34
Identities = 85/240 (35%), Positives = 141/240 (58%), Gaps = 7/240 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G E + + KIAK+++G+ ++ V FT+ QPN AL + ++D NAFQ YL+
Sbjct: 43 GVMTG--PEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLE 100
Query: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAG 163
K + IG+T++ PI YS K KN++E+ D +T+AIPN+ +N +RAL +L+ G
Sbjct: 101 QEVKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG 160
Query: 164 LIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EK 222
L+KL + AT DI +NPK + I + D S R LD V AVIN +A A +S +K
Sbjct: 161 LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDK 220
Query: 223 ESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ I E ++DS ++N + + + +K++ + VK+++ + + K + +GG + W
Sbjct: 221 DGIIVE--SKDS-PYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLF-NGGVVKGW 276
emb|CAA06664| (AJ005668) 29 kDa immunogenic protein [Legionella pneumophila]
Length = 259
Score = 144 bits (359), Expect = 1e-33
Identities = 81/232 (34%), Positives = 135/232 (57%), Gaps = 7/232 (3%)
Query: 52 EDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNG 111
E + + +++A+ ++G+ +K V F D + PN+AL + +D N +QH YLK+ ++
Sbjct: 34 ETELIETAKQVAEKEYGLNIKIVEFNDYNLPNEALQDGSLDANVYQHLPYLKAAILSHGY 93
Query: 112 NIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSR 171
++ +IG T + P+ +YS KYK ++E+P+ IA+PND +NE RA +L+ A LI L +
Sbjct: 94 DLQAIGRTFVYPMGIYSKKYKTLSELPENGIIAVPNDPSNEMRAFLLLEKAHLITLKNTT 153
Query: 172 GALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPL 230
+ ++DI NPK KEIDA+Q PR L V AAVIN FA+ A +S K++++ E
Sbjct: 154 N--SGIQDIESNPKQFKFKEIDAAQLPRVLPDVDAAVINTTFALPAGLSPSKDALFTE-- 209
Query: 231 NEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+DS + N I + + + VKA + + + KK + + +PAW
Sbjct: 210 GKDS-PYANIIVIRRDTEKRPQLELFVKALNSEEVKEKAKKLFGEDA-IPAW 259
gi|294070 (L16627) lipoprotein 2 [Pasteurella haemolytica]
Length = 277
Score = 142 bits (355), Expect = 3e-33
Identities = 84/240 (35%), Positives = 138/240 (57%), Gaps = 6/240 (2%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G E + + KIAK+++G+ ++ V FT+ QPN AL + ++D NAFQ YL+
Sbjct: 43 GVMTG--PEAQMTEVAVKIAKEKYGLDVELVQFTEYTQPNAALHSKDLDANAFQTVPYLE 100
Query: 104 SWNKANNGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAG 163
K + IG+T++ PI YS K KN++E+ D +T+AIPN+ +N +RAL +L+ G
Sbjct: 101 QEVKDRGYKLAIIGNTLVWPIAAYSKKIKNISELKDGATVAIPNNASNTARALLLLQAHG 160
Query: 164 LIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EK 222
L+KL + AT DI +NPK + I + D S R LD V AVIN +A A +S +K
Sbjct: 161 LLKLKDPKNVFATENDIIENPKNIKIVQADTSLLTRMLDDVELAVINNTYAGQAGLSPDK 220
Query: 223 ESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ I E ++DS ++N + + + +K++ + VK+++ + + K G + W
Sbjct: 221 DGIIVE--SKDS-PYVNLVVSREDNKDDPRLQTFVKSFQTEEVFQEALKLLTVHGVVKGW 277
emb|CAB73036.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 256
Score = 142 bits (354), Expect = 4e-33
Identities = 80/219 (36%), Positives = 125/219 (56%), Gaps = 9/219 (4%)
Query: 61 KIAKDQF---GITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIG 117
++ KD F G LK V F+D PN+AL E+D N +QH +L+ +N N+++
Sbjct: 37 ELMKDDFKNKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATT 96
Query: 118 DTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATV 177
+I P+ +YS K KN+ + + + +AIPND TNESRAL +L+ A LI+L ++ L T
Sbjct: 97 PVLIAPVGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIEL--NKNTLKTP 154
Query: 178 KDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPLNEDSAQ 236
DI NPK L E+ A+Q PRALD V A+IN NFA+ A ++ K++I++E N +
Sbjct: 155 LDINKNPKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKN---SP 211
Query: 237 WINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPD 275
++N++ KN++ K + + I + Y D
Sbjct: 212 YVNYVVVRSEGKNSEKTKVIDEILRSDKFKAIINEHYKD 250
gb|AAF10930.1|AE001982_4 (AE001982) outer membrane protein [Deinococcus radiodurans]
Length = 256
Score = 140 bits (349), Expect = 1e-32
Identities = 80/216 (37%), Positives = 124/216 (57%), Gaps = 5/216 (2%)
Query: 68 GITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTIITPIHLY 127
G+ L+ FTD QPN AL VD N FQH YL ++ + IV + + P+ LY
Sbjct: 45 GVKLEIREFTDYVQPNVALGEGSVDANLFQHTPYLNAFQQNRPLGIVPVKKIYLPPLGLY 104
Query: 128 STKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGL 187
S + VTE+ +TIA+PND +NE+RAL +L+ AGLI+L G AT KDI N KGL
Sbjct: 105 SKRVSKVTELAKGATIALPNDPSNEARALLLLEKAGLIRLRAGAGVSATPKDIISNIKGL 164
Query: 188 IIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPLNEDSAQWINFIAANQS 246
+E++A+Q PR+L V AA++N N+A+ + K++++ E N + ++N +A ++
Sbjct: 165 KFRELEAAQLPRSLQDVDAAIVNANYALDIGLDPTKDALFHEGKN---SPYVNILATTKA 221
Query: 247 DKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ NN K++ A + K+Y G +PA+
Sbjct: 222 NLNNPDLKKLTAALTSPEAKAWLLKKY-GGSVIPAF 256
gb|AAF10931.1|AE001982_5 (AE001982) outer membrane protein [Deinococcus radiodurans]
Length = 256
Score = 139 bits (346), Expect = 3e-32
Identities = 80/215 (37%), Positives = 128/215 (59%), Gaps = 3/215 (1%)
Query: 68 GITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTIITPIHLY 127
G+ L+ FTD QPN ALA+ +D+N FQH YL S+ + IV+ + P+ +Y
Sbjct: 45 GVKLEIREFTDYVQPNVALADGAIDVNFFQHVPYLNSFQQNRPLGIVAGAKVHVEPMGVY 104
Query: 128 STKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGL 187
S + + ++++ + +TIA+PND +N RAL +L+ AGLI+L S G ATV+DI N K L
Sbjct: 105 SKRVRKLSDLKNGATIALPNDPSNSGRALKLLERAGLIRLKPSAGISATVRDITTNLKRL 164
Query: 188 IIKEIDASQTPRALDSVAAAVINYNFAISAKISEKESIYQEPLNEDSAQWINFIAANQSD 247
+E++A+Q PRAL V AAVIN N+A+ A ++ + + L + ++ + N +AA +
Sbjct: 165 KFRELEAAQLPRALGDVDAAVINTNYALEAGLNPLKDALK--LEDKNSPYANVLAAKPAT 222
Query: 248 KNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
N Y ++V+ + K I K+Y G +PA+
Sbjct: 223 LKNPDYLKLVRVLQSKETKAFILKKY-GGAIVPAF 256
gi|2108234 (U97358) 29K protein [Treponema pallidum] >gi|2196996 (U93844)
lipoprotein homolog [Treponema pallidum] >gi|3323134
(AE001253) lipoprotein (tpn32) [Treponema pallidum]
Length = 268
Score = 138 bits (343), Expect = 7e-32
Identities = 73/225 (32%), Positives = 137/225 (60%), Gaps = 7/225 (3%)
Query: 61 KIAKDQFG---ITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIG 117
+IAK++ I L+ V FT+ N+A+ ++ +N FQH +++ +N+ +NG++VS+G
Sbjct: 46 EIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQHVPHMQQFNQEHNGDLVSVG 105
Query: 118 DTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATV 177
+ + P+ LYS Y++V++ P + IAIPND +NE+RAL +L+ AG I++ G ATV
Sbjct: 106 NVHVEPLALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAGFIRMRAGSGLFATV 165
Query: 178 KDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPLNEDSAQ 236
+D++ N + ++++E++++ PR D V AVIN N+AI A +S ++ + EP D++
Sbjct: 166 EDVQQNVRNVVLQEVESALLPRVFDQVDGAVINGNYAIMAGLSARRDGLAVEP---DASA 222
Query: 237 WINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPA 281
+ N + + ++ + + V++A + +K+ Y G PA
Sbjct: 223 YANVLVVKRGNEADARVQAVLRALCGGRVRTYLKERYKGGEVAPA 267
emb|CAB73037.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 257
Score = 134 bits (335), Expect = 6e-31
Identities = 84/229 (36%), Positives = 129/229 (55%), Gaps = 8/229 (3%)
Query: 55 IWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIV 114
I +QV+ + Q G L+ FTD PN A+ N E D N FQH YL+ +NK ++
Sbjct: 36 ILEQVKPDLEKQ-GYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLI 94
Query: 115 SIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGAL 174
+ I P+ +YS KYK++ +I + IAIPND TNESRAL ++ GL+K AL
Sbjct: 95 KVAAIHIEPMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDK--AL 152
Query: 175 ATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEPLNED 233
T DI DNPK + E+ +Q PRAL+ V AVIN N+A+SA ++ K+S++ + +
Sbjct: 153 KTPLDIIDNPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVF---IEDK 209
Query: 234 SAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
+ + N + +N+ K +++A + I I ++Y +G LPA+
Sbjct: 210 ESPYANILVVRVGHENDPKIKALIQALQSDKIKQFIIEKY-NGSVLPAF 257
gi|294069 (L16627) lipoprotein 1 [Pasteurella haemolytica]
Length = 278
Score = 133 bits (331), Expect = 2e-30
Identities = 81/237 (34%), Positives = 139/237 (58%), Gaps = 10/237 (4%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+M G E + ++ +IAK+++G+ ++FV F D PN A++ ++D NAFQH YL
Sbjct: 43 GVMSG--PEHTVAERAAQIAKEKYGLEVEFVLFNDYALPNTAVSKGDLDANAFQHKPYLD 100
Query: 104 SWNKANN-GNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRA--LYVLK 160
+++ N+V +G+T + P+ YS K KNV+E+ + + IA+PND +N +RA L +L+
Sbjct: 101 KDSQSKGLNNLVIVGNTFVYPLAGYSKKVKNVSELAEGAVIAVPNDPSNLARALILILLE 160
Query: 161 NAGLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS 220
GLIKL + +T DI +NPK L IKE+D S D V AV+N +A ++
Sbjct: 161 KLGLIKLKDNTNLFSTSVDIIENPKNLKIKEVDTSIAANVSD-VDLAVVNNTYAGQVGLN 219
Query: 221 EKE-SIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDG 276
++ ++ E ++DS ++N I A Q +K+ + +K+Y+ + + +K + DG
Sbjct: 220 TQDHGVFVE--SKDS-PYVNIIVARQDNKDAANVQNFIKSYQTEEVYQEAQKHFKDG 273
emb|CAB15262| (Z99120) similar to hypothetical proteins [Bacillus subtilis]
Length = 274
Score = 128 bits (319), Expect = 5e-29
Identities = 81/230 (35%), Positives = 131/230 (56%), Gaps = 7/230 (3%)
Query: 55 IWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNG-NI 113
I K+ + + K++ G TLK +D NKALA+ EVD N FQH YL+ K N +
Sbjct: 45 ILKEAEPLLKEK-GYTLKVKVLSDYKMYNKALADKEVDANYFQHIPYLEQEMKENTDYKL 103
Query: 114 VSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGA 173
V+ G + P +YS YK++ ++PD +TI + N+V + R L +L+NAGLI LD+
Sbjct: 104 VNAGAVHLEPFGIYSKTYKSLKDLPDGATIILTNNVAEQGRMLAMLENAGLITLDSKVET 163
Query: 174 L-ATVKDIRDNPKGLIIKEIDASQTPRALDSVA--AAVINYNFAISAKISEKESIYQEPL 230
+ AT+KDI+ NPK L K++ T +A ++ A IN N+AI K++ K+ +
Sbjct: 164 VDATLKDIKKNPKNLEFKKVAPELTAKAYENKEGDAVFINVNYAIQNKLNPKKDAIEVES 223
Query: 231 NEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELP 280
+++ + N IA + ++++ K +++ K I D I+K+Y DG LP
Sbjct: 224 TKNN-PYANIIAVRKGEEDSAKIKALMEVLHSKKIKDFIEKKY-DGAVLP 271
emb|CAB73454.1| (AL139077) putative periplasmic protein [Campylobacter jejuni]
Length = 262
Score = 119 bits (296), Expect = 2e-26
Identities = 78/223 (34%), Positives = 122/223 (53%), Gaps = 8/223 (3%)
Query: 61 KIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTI 120
K A + G LK F DG PN + N E+D N FQH YLK +N+ ++V +
Sbjct: 47 KSALQKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIH 106
Query: 121 ITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDI 180
I P+ +YS K+K + +I+IPN+ TNESRAL ++ + GLI++ + L T DI
Sbjct: 107 IEPMAVYSKKHKEF-HPKEGQSISIPNNPTNESRALRIVVSKGLIEVKDNE--LITPLDI 163
Query: 181 RDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKISE-KESIYQEPLNEDSAQWIN 239
NPK L E+ +Q R+LD V ++IN NFAI A ++ K+ +Y E +++ N
Sbjct: 164 TKNPKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTE---SKYSEYGN 220
Query: 240 FIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
IA + ++N K +VKA + + I+++Y G +P +
Sbjct: 221 IIAVKEGNENLPKIKALVKALQSNEVKKFIEEKY-QGALIPTF 262
gb|AAD08604.1| (AE000654) outer membrane protein [Helicobacter pylori 26695]
Length = 271
Score = 114 bits (282), Expect = 1e-24
Identities = 69/215 (32%), Positives = 112/215 (52%), Gaps = 6/215 (2%)
Query: 68 GITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTIITPIHLY 127
GI L V+FTD PN AL + +D N FQH YL +N ++V + + + P+ Y
Sbjct: 63 GIKLVIVSFTDYVLPNLALNDGSLDANYFQHRPYLDRFNLDRKMHLVGLANIHVEPLRFY 122
Query: 128 STKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGL 187
S K ++ + S IA+PND N+ RAL +L GLI L AT DI NP +
Sbjct: 123 SQKITDIKNLKKGSVIAVPNDPANQGRALILLHKQGLIALKDPSNLYATEFDIVKNPYNI 182
Query: 188 IIKEIDASQTPRALDSVAAAVINYNFAISAKISEKESIYQEPLNEDSAQWINFIAANQSD 247
IK ++A+ P+ L V A+I N+A+ AK++ +++ E + + + N IAA + +
Sbjct: 183 KIKPLEAALLPKVLGDVDGAIITGNYALQAKLT--GALFSE---DKDSPYANLIAAREDN 237
Query: 248 KNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
++ K +++A + + I Y G +PA+
Sbjct: 238 AQDEAIKTLIEALQSEKTRKFILDTY-KGAIIPAF 271
emb|CAB73035.1| (AL139076) putative periplasmic protein [Campylobacter jejuni]
Length = 258
Score = 113 bits (281), Expect = 1e-24
Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 2/190 (1%)
Query: 76 FTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTIITPIHLYSTKYKNVT 135
F D + PN AL ++D N +QH +L +N + S+G ++ P+ +YS K++
Sbjct: 56 FNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLVPMAIYSNSIKDIK 115
Query: 136 EIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGLIIKEIDAS 195
+IP+ + IAIPND TNESRAL +L A LI+ S+ L T DI NPK L E+ A+
Sbjct: 116 DIPNGAKIAIPNDATNESRALDLLAKANLIEF-KSQSTLKTPIDISKNPKKLKFIELKAA 174
Query: 196 QTPRALDSVAAAVINYNFAISAKISE-KESIYQEPLNEDSAQWINFIAANQSDKNNKVYK 254
Q PRAL+ A+I N+A+ A ++ K+ I+ E + A + ++ + + V K
Sbjct: 175 QLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVLATRKGEETSQKSLVIK 234
Query: 255 EVVKAYEQKN 264
E++ + + KN
Sbjct: 235 EILTSDKIKN 244
gi|4156104 (AE001569) putative Outer membrane protein [Helicobacter pylori
J99]
Length = 271
Score = 112 bits (278), Expect = 3e-24
Identities = 67/215 (31%), Positives = 112/215 (51%), Gaps = 6/215 (2%)
Query: 68 GITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANNGNIVSIGDTIITPIHLY 127
GI L V+FTD PN AL + +D N FQH YL +N ++V + + + P+ Y
Sbjct: 63 GIKLVIVSFTDYVLPNLALNDGSLDANYFQHRPYLDRFNLDRKMHLVGLANIHVEPLRFY 122
Query: 128 STKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGL 187
S K ++ + S IA+PND N+ RAL +L GLI L AT DI NP +
Sbjct: 123 SQKITDIKNLKKGSVIAVPNDPANQGRALILLHKQGLIALKDPSNLYATEFDIVKNPYNI 182
Query: 188 IIKEIDASQTPRALDSVAAAVINYNFAISAKISEKESIYQEPLNEDSAQWINFIAANQSD 247
IK ++A+ P+ L V A+I N+A+ AK++ +++ E + + + N +A+ + +
Sbjct: 183 KIKPLEAALLPKVLGDVDGAIITGNYALQAKLT--GALFSE---DKDSPYANLVASREDN 237
Query: 248 KNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAW 282
++ K +++A + + I Y G +PA+
Sbjct: 238 AQDEAIKALIEALQSEKTRKFILDTY-KGAIIPAF 271
gb|AAD51879.1|AF102556_3 (AF102556) lipoprotein [Salmonella enteritidis]
Length = 276
Score = 110 bits (273), Expect = 1e-23
Identities = 79/246 (32%), Positives = 124/246 (50%), Gaps = 16/246 (6%)
Query: 44 GLMPGGKQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLK 103
G+ PG D + + + K++ G + F+D QPN ALAN +D N FQH Y
Sbjct: 35 GVAPG-PYGDMVKQAIAPTLKEK-GYKVVVREFSDYVQPNMALANGSIDANLFQHTLYFD 92
Query: 104 SWNKANNGNIVSIGDTIITP---IHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLK 160
+ A+ G + + I+ P + YS K ++ + I + ND TN +R L L+
Sbjct: 93 KFT-ADKG--LKLSKLIVVPTAGMGFYSRKINSLDALKKGDIITLSNDPTNLARGLRFLQ 149
Query: 161 NAGLIKL-DTSRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKI 219
+ GLI + D A+ +DI NPKGL+ K ++A+Q PR LD V A++N NFA++A +
Sbjct: 150 SLGLITIKDNIDPTKASERDIASNPKGLVFKPLEAAQLPRTLDGVTGALVNGNFAVAAGL 209
Query: 220 SEKESIYQEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQ---KNIADSIKKEYPDG 276
+I QE L+E+ N IA D + K++V+A + + + D K Y
Sbjct: 210 DLSSAIKQEHLDENLK---NIIAVRSEDADKPFAKDIVEAVKSPAYRAVIDDPKNIY-SA 265
Query: 277 GELPAW 282
+ P W
Sbjct: 266 FQKPEW 271
sp|P54594|YHCJ_BACSU HYPOTHETICAL 29.2 KD LIPOPROTEIN IN CSPB-GLPP INTERGENIC REGION
PRECURSOR >gi|1239986|emb|CAA65694.1| (X96983)
hypothetical protein [Bacillus subtilis]
>gi|2633234|emb|CAB12739| (Z99108) similar to ABC
transporter (binding lipoprotein) [Bacillus subtilis]
Length = 263
Score = 104 bits (256), Expect = 1e-21
Identities = 64/227 (28%), Positives = 123/227 (53%), Gaps = 11/227 (4%)
Query: 50 KQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKAN 109
+ + AIW + + A++ G+ ++ + F+D + + ALAN E+D NAFQ +Y +S+ +
Sbjct: 35 ESDGAIWNYIAQKAEEA-GLDIQLIPFSDYAESDIALANKEIDANAFQTISYFQSFTEKY 93
Query: 110 NGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDT 169
N+ +G T ITP+ +YS +Y+ + +I + +++P+ + RAL VL+ AGL+ L
Sbjct: 94 KLNLAPLGTTYITPMGIYSKRYERIRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKN 153
Query: 170 SRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAA---VINYNFAISAKISEKESIY 226
+V I+DNP+ L +K + R D+V+ A V+ + A A ++ K+
Sbjct: 154 GFNGTGSVDMIKDNPRHLKLKAV------RQQDAVSGADVFVMKPSEAKKAGLNPKKHTL 207
Query: 227 QEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEY 273
+ S + +N I D++ + + +++ Y+ + A I+KEY
Sbjct: 208 KSG-GLMSEEEMNLIVVRAEDQDREALQTILELYQADDTAAFIEKEY 253
gi|1336657 (U58859) lipoprotein [Bacillus subtilis]
Length = 263
Score = 102 bits (252), Expect = 3e-21
Identities = 67/238 (28%), Positives = 128/238 (53%), Gaps = 12/238 (5%)
Query: 50 KQEDAIWKQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKAN 109
+ + AIW + + A++ G+ ++ + F+D + + ALAN E+D N FQ +Y +S+ +
Sbjct: 35 ESDGAIWNYIAQKAEEA-GLDIQLIPFSDYAESDIALANKEIDANTFQTISYFQSFTEKY 93
Query: 110 NGNIVSIGDTIITPIHLYSTKYKNVTEIPDKSTIAIPNDVTNESRALYVLKNAGLIKLDT 169
N+ +G T ITP+ +YS +Y+ + +I + +++P+ + RAL VL+ AGL+ L
Sbjct: 94 KLNLAPLGTTYITPMGIYSKRYERLRDISRGAVVSVPDKAFDFGRALTVLQEAGLLTLKN 153
Query: 170 SRGALATVKDIRDNPKGLIIKEIDASQTPRALDSVAAA---VINYNFAISAKISEKESIY 226
+V I+DNP+ L +K + R D+V+ A V+ + A A ++ K+
Sbjct: 154 GFNGTGSVDMIKDNPRLLKLKAV------RQQDAVSGADVFVMKPSEAKKAGLNPKKHTL 207
Query: 227 QEPLNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEYPDGGELPAWNL 284
+ S + +N I D++ + + +++ Y+ + A I+KEY G +PA+ L
Sbjct: 208 KSG-GLMSEEEMNLIVVRAEDQDREALQTILELYQADDTAAFIEKEY-QGDLVPAFCL 263
gb|AAD18427| (AE001613) conserved outer membrane lipoprotein protein [Chlamydia
pneumoniae]
Length = 272
Score = 88.2 bits (215), Expect = 7e-17
Identities = 70/224 (31%), Positives = 115/224 (51%), Gaps = 11/224 (4%)
Query: 57 KQVQKIAKDQFGITLKFVNFTDGDQPNKALANHEVDLNAFQHYAYLKSWNKANN--GNIV 114
+ +Q+ AKD GI LK + D PN+ L + +VD N FQH A+L + + G +V
Sbjct: 41 ESLQEEAKD-LGIKLKILPVDDYRIPNRLLLDKQVDANYFQHQAFLDDECERYDCKGELV 99
Query: 115 SIGDTIITPIHLYSTKYKNVTEIPD--KSTIAIPNDVTNESRALYVLKNAGLIKLDTSRG 172
I + P +YS K+ ++ + K TIAIP D TN RAL++L+ GLI
Sbjct: 100 VIAKVHLEPQAIYSKKHSSLERLKSQKKLTIAIPVDRTNAQRALHLLEECGLIVCKGPAN 159
Query: 173 ALATVKDI--RDNPKGLIIKEIDASQTPRALDSVAAAVINYNFAISAKIS-EKESIYQEP 229
T KD+ ++N + + I E+ A +L V AAVI NFAI+A +S +K+S+ E
Sbjct: 160 LNMTAKDVCGKEN-RSINILEVSAPLLVGSLPDVDAAVIPGNFAIAANLSPKKDSLCLED 218
Query: 230 LNEDSAQWINFIAANQSDKNNKVYKEVVKAYEQKNIADSIKKEY 273
L+ +++ N + D + ++ K ++ ++ +Y
Sbjct: 219 LS--VSKYTNLVVIRSEDVGSPKMIKLQKLFQSPSVQHFFDTKY 260
pir||A47040 probable envelope protein - Escherichia coli (fragment) >gi|147531
(L04474) lipoprotein 28 [Escherichia coli]
Length = 101
Score = 71.4 bits (172), Expect = 8e-12
Identities = 38/80 (47%), Positives = 52/80 (64%), Gaps = 2/80 (2%)
Query: 137 IPDKSTIAIPNDVTNESRALYVLKNAGLIKLDTSRGALATVKDIRDNPKGLIIKEIDASQ 196
+ D S +A+PND TN R+L +L+ GLIKL G L TV D+ +NPK L I E++A Q
Sbjct: 1 LQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQ 60
Query: 197 TPRALD--SVAAAVINYNFA 214
PR+LD +A A+IN +A
Sbjct: 61 LPRSLDDAQIALALINTTYA 80
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.312 0.131 0.371
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71785002
Number of Sequences: 457798
Number of extensions: 2796499
Number of successful extensions: 6188
Number of sequences better than 1.0e-02: 29
Number of HSP's better than 0.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6131
Number of HSP's gapped (non-prelim): 29
length of query: 286
length of database: 140,871,481
effective HSP length: 59
effective length of query: 227
effective length of database: 113,861,399
effective search space: 25846537573
effective search space used: 25846537573
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 95 (41.4 bits)