BLASTP 2.0.11 [Jan-20-2000]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pi321 (1433 kb reverse) BIO14.03
         (107 letters)

           457,798 sequences; 140,871,481 total letters

Searching...................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C37397  hypothetical protein (bpi 3' region) - Lactococ...   126  4e-29
gb|AAC39275.1|  (AF115103) orf106 gp [Streptococcus thermoph...    50  5e-06
pir||PC2396  hypothetical 111 K protein - Leuconostoc oenos ...    48  2e-05
gb|AAC39289.1|  (AF115102) orf104 gp [Streptococcus thermoph...    48  2e-05
gb|AAD21885.1|  (AF085222) putative DNA packaging protein [S...    47  4e-05
emb|CAB52522.1|  (AJ131519) hypothetical protein [Lactobacil...    40  0.005

 pir||C37397 hypothetical protein (bpi 3' region) - Lactococcus lactis phage
          BK5-T (fragment)
          Length = 72
          
 Score =  126 bits (314), Expect = 4e-29
 Identities = 61/64 (95%), Positives = 62/64 (96%)

Query: 26 FDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINRSTTMPPTTAVDHMV 85
          FDTA AYVKNAVSSDTVDAPFF+VENV PIYDVAVLSYSMDLWINRSTTMPPTTAVDHMV
Sbjct: 9  FDTAKAYVKNAVSSDTVDAPFFSVENVYPIYDVAVLSYSMDLWINRSTTMPPTTAVDHMV 68

Query: 86 GQLR 89
          GQLR
Sbjct: 69 GQLR 72



 gb|AAC39275.1| (AF115103) orf106 gp [Streptococcus thermophilus bacteriophage
           Sfi21]
           Length = 106
           
 Score = 50.0 bits (117), Expect = 5e-06
 Identities = 25/78 (32%), Positives = 47/78 (60%), Gaps = 8/78 (10%)

Query: 25  YFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLS-----YSMDLWINRSTTMPPTT 79
           Y ++A  Y+ NAV SD     F+ +ENV  ++D AV++     ++  + +N + T P   
Sbjct: 26  YIESAQQYIINAVGSDP---KFYELENVKYLFDTAVIALTSTYFTYRVALNETLTYPINL 82

Query: 80  AVDHMVGQLRGLYSSWKE 97
            ++ ++GQLRGLY+++ +
Sbjct: 83  TLNSIIGQLRGLYATYSD 100



 pir||PC2396 hypothetical 111 K protein - Leuconostoc oenos phage L10
          (fragment) >gi|806611 (L13035) ORFK [Bacteriophage L10]
          Length = 111
          
 Score = 48.4 bits (113), Expect = 2e-05
 Identities = 23/80 (28%), Positives = 42/80 (51%), Gaps = 5/80 (6%)

Query: 22 LQIYFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINRS-----TTMP 76
          LQ Y   A AY+ NA+ +D  +  F++  +VSP++D A ++ +   + NR      +  P
Sbjct: 14 LQGYITAAVAYLTNAIGADDANKTFYSRSDVSPLFDTATIALASAYYSNRDALTNVSAAP 73

Query: 77 PTTAVDHMVGQLRGLYSSWK 96
               D ++ QLR ++  W+
Sbjct: 74 VPLVSDSIIYQLRAMWEDWQ 93



 gb|AAC39289.1| (AF115102) orf104 gp [Streptococcus thermophilus bacteriophage
           Sfi19]
           Length = 104
           
 Score = 48.0 bits (112), Expect = 2e-05
 Identities = 24/78 (30%), Positives = 47/78 (59%), Gaps = 8/78 (10%)

Query: 25  YFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINR-----STTMPPTT 79
           Y ++A  Y+ NAV SD+    F+++++V  ++D AV++ +   +  R     + T P   
Sbjct: 26  YIESAKQYIINAVGSDS---KFYDLDSVRALFDTAVIALTSSYFTYRVALTDTATYPVNL 82

Query: 80  AVDHMVGQLRGLYSSWKE 97
            ++ ++GQLRGLY+++ E
Sbjct: 83  TLNSIIGQLRGLYATYSE 100



 gb|AAD21885.1| (AF085222) putative DNA packaging protein [Streptococcus
           thermophilus bacteriophage DT1]
           Length = 104
           
 Score = 47.3 bits (110), Expect = 4e-05
 Identities = 24/78 (30%), Positives = 45/78 (56%), Gaps = 8/78 (10%)

Query: 25  YFDTATAYVKNAVSSDTVDAPFFNVENVSPIYDVAVLSYSMDLWINR-----STTMPPTT 79
           Y ++A  YV N+V  D     F+N+++V  ++D AV++ +   +  R     + T P   
Sbjct: 26  YIESARQYVVNSVGDDP---KFYNLDSVRALFDTAVIALTSSYFTYRVALTDTATYPVNL 82

Query: 80  AVDHMVGQLRGLYSSWKE 97
            ++ ++GQLRGLY+++ E
Sbjct: 83  TLNSIIGQLRGLYATYSE 100



 emb|CAB52522.1| (AJ131519) hypothetical protein [Lactobacillus bacteriophage phi
           adh]
           Length = 126
           
 Score = 40.2 bits (92), Expect = 0.005
 Identities = 26/84 (30%), Positives = 44/84 (51%), Gaps = 7/84 (8%)

Query: 29  ATAYVKNAVSSDTVDAPFFNVENVSPIYDVA----VLSYSMD-LWINRSTTMPPTTAVDH 83
           A +YV++A+ +D  D  F+  E   P+Y +       SY  + + I     +      + 
Sbjct: 39  AESYVQHAIGTDVKD--FYISEENKPLYTLVCNALAASYVQNPVSITSGAVVNVDIVTNA 96

Query: 84  MVGQLRGLYSSWKEAQDGQNLQTE 107
           ++GQLRG Y+   EAQDGQN +++
Sbjct: 97  IIGQLRGRYAKELEAQDGQNTKSQ 120



    Posted date:  Mar 2, 2000 12:24 PM
  Number of letters in database: 140,871,481
  Number of sequences in database:  457,798
  
Lambda     K      H
   0.315    0.128    0.372 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25780544
Number of Sequences: 457798
Number of extensions: 864037
Number of successful extensions: 1939
Number of sequences better than 1.0e-02: 6
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1933
Number of HSP's gapped (non-prelim): 6
length of query: 107
length of database: 140,871,481
effective HSP length: 55
effective length of query: 52
effective length of database: 115,692,591
effective search space: 6016014732
effective search space used: 6016014732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 90 (39.5 bits)