Score E
Sequences producing significant alignments: (bits) Value
emb|CAB07953.1| (Z93939) unknown [Bacillus subtilis] >gi|26... 176 7e-43
gi|2612901 (AF015825) NADH dehydrogenase-like protein [Baci... 158 2e-37
emb|CAA71031| (Y09899) putative NADH dehydrogenase [Calothr... 122 1e-26
emb|CAB41413.1| (AJ238250) NADH dehydrogenase [Corynebacter... 111 2e-23
ref|NP_013586.1|NDI1| NADH dehydrogenase (ubiquinone); Ndi1... 110 3e-23
emb|CAA15447.1| (AL008609) dehydrogenase [Mycobacterium lep... 109 1e-22
gi|2708705 (AF038423) NADH dehydrogenase [Mycobacterium sme... 107 3e-22
gb|AAF10523.1|AE001947_6 (AE001947) NADH dehydrogenase II [... 106 5e-22
emb|CAB06133| (Z83859) ndh [Mycobacterium tuberculosis] 106 5e-22
emb|CAA07265.1| (AJ006852) alternative NADH-dehydrogenase [... 105 1e-21
dbj|BAA17787| (D90909) NADH dehydrogenase [Synechocystis sp.] 104 2e-21
emb|CAA43787| (X61590) NADH dehydrogenase (ubiquinone) [Sa... 102 9e-21
ref|NP_013865.1|YMR145C| Ymr145cp >gi|732163|sp|P40215|YM23... 101 3e-20
gb|AAD56918.1|AF180145_10 (AF180145) NADH dehydrogenase [Zy... 98 3e-19
ref|NP_010198.1|YDL085W| Ydl085wp >gi|2131327|pir||S67621 h... 97 4e-19
emb|CAB16382.1| (Z99260) putative nadh-dehydrogenase [Schiz... 96 1e-18
sp|P00393|DHNA_ECOLI NADH DEHYDROGENASE >gi|66211|pir||DEEC... 96 1e-18
gb|AAD20915.1| (AC006234) putative NADH-ubiquinone oxireduc... 95 2e-18
dbj|BAA18722| (D90916) NADH dehydrogenase [Synechocystis sp.] 95 2e-18
gb|AAD48975.1|AF162444_7 (AF162444) contains similarity to ... 91 2e-17
emb|CAB06598| (Z84725) hypothetical protein Rv0392c [Mycoba... 88 3e-16
emb|CAA22033| (AL033505) putative dehydrogenase [Streptomyc... 87 4e-16
gb|AAC31853.1| (AC004680) putative NADH dehydrogenase (ubiq... 87 5e-16
emb|CAB52797.1| (AJ245862) putative external rotenone-insen... 87 6e-16
emb|CAB41986.1| (AJ236906) 64 kDa mitochondrial NADH dehydr... 83 9e-15
emb|CAA17043.1| (AL021837) hypothetical protein [Schizosac... 78 2e-13
emb|CAB52796.1| (AJ245861) putative internal rotenone-insen... 77 5e-13
emb|CAA18713.1| (AL022603) NADH dehydrogenase like protein ... 76 9e-13
dbj|BAA17783| (D90909) NADH dehydrogenase [Synechocystis sp.] 74 3e-12
sp|P44856|DHNA_HAEIN NADH DEHYDROGENASE >gi|1075062|pir||C6... 74 3e-12
emb|CAB53125.1| (AL109962) putative oxidoreductase [Strepto... 71 2e-11
emb|CAB15210| (Z99120) similar to NADH dehydrogenase [Bacil... 69 9e-11
dbj|BAA30617| (AP000006) 440aa long hypothetical NADH oxida... 66 1e-09
gb|AAD35480.1|AE001719_6 (AE001719) NADH oxidase, putative ... 65 2e-09
gb|AAD35465.1|AE001718_2 (AE001718) NADH oxidase [Thermotog... 64 4e-09
emb|CAB49573.1| (AJ248285) NADH oxidase (noxA-2) [Pyrococcu... 61 3e-08
gb|AAD35836.1|AE001745_3 (AE001745) oxidoreductase [Thermot... 61 3e-08
emb|CAB09500| (Z96073) hypothetical protein Rv1812c [Mycoba... 60 6e-08
gi|2650233 (AE001077) NADH oxidase (noxA-3) [Archaeoglobus ... 58 2e-07
sp|Q10499|YDGE_SCHPO PUTATIVE FLAVOPROTEIN C26F1.14C 53 6e-06
sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|212... 53 6e-06
emb|CAA97371.1| (Z73100) putative flavoprotein [Schizosacch... 53 6e-06
dbj|BAA79565.1| (AP000060) 386aa long hypothetical protein ... 50 6e-05
emb|CAA15231| (AJ235273) DIHYDROLIPOAMIDE DEHYDROGENASE (p... 48 3e-04
sp|P75389|NAOX_MYCPN PROBABLE NADH OXIDASE (NOXASE) >gi|214... 47 6e-04
gi|2982940 (AE000679) sulfide dehydrogenase, flavoprotein s... 46 0.001
gi|2622461 (AE000898) NADH oxidase [Methanobacterium thermo... 46 0.001
emb|CAB50317.1| (AJ248287) NADH oxidase (noxA-1) [Pyrococcu... 45 0.002
pir||I40794 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - C... 45 0.002
gi|2688656 (AE001172) NADH oxidase, water-forming (nox) [Bo... 44 0.004
sp|O50311|DLDH_CHLVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COM... 44 0.004
dbj|BAA74793.1| (AB017192) nitrate reductase NADH oxydase s... 43 0.006
sp|O05940|DLDH_RHIET PROBABLE DIHYDROLIPOAMIDE DEHYDROGENAS... 43 0.008
emb|CAB07953.1| (Z93939) unknown [Bacillus subtilis] >gi|2635707|emb|CAB15200|
(Z99120) similar to NADH dehydrogenase [Bacillus
subtilis]
Length = 406
Score = 176 bits (441), Expect = 7e-43
Identities = 106/362 (29%), Positives = 182/362 (49%), Gaps = 10/362 (2%)
Query: 29 DADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKEN 88
DADITL++KH+YH T +HE +AG + +Y + ++ + + E
Sbjct: 32 DADITLVNKHNYHYETTWMHEASAGTLHHDRCRYQIKDVINQSRVNFVQDTVKAIKIDE- 90
Query: 89 KQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAST 148
K+V+ +G YDY+++ LG P FG+ G+KE+ F + ++ + ++ H+E +Q+A+
Sbjct: 91 KKVVLANGELQYDYLVIGLGAVPETFGIKGLKEYAFPIANINTSRLLREHIE--LQFATY 148
Query: 149 EVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILN 208
+ EKR LTI V G+GFTGIE GEL ++ ++ + + I VE PT+L
Sbjct: 149 NTEAEKRPDRLTIVVGGAGFTGIEFLGELAARVPELCKEYDVDRSLVRIICVEAAPTVLP 208
Query: 209 TLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTT 268
D + D A YLE+ V + E + ++ VG +DEE +++ + T++W
Sbjct: 209 GFDPELVDYAVHYLEENGVEFKIGTAVQECTPEGVR--VGKKDEE--PEQIKSQTVVWAA 264
Query: 269 GVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVX 328
GV+G+ + E RG R++ N ++A G + +++ GD S ++ DT RP P
Sbjct: 265 GVRGHPIVEEAGFENMRG-RVKVNPDLRAPGHD--NVFILGDSSLFMNEDTERPYPPTAQ 321
Query: 329 XXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSMRLTGFWAMLMKN 388
N+ I GG + + +GT+ S+G V + +L G A MK
Sbjct: 322 IAMQQGITVAKNLGRLIKGGELEEFKPDIKGTVASLGEHNAVGVVYGRKLKGTPASFMKK 381
Query: 389 IV 390
++
Sbjct: 382 VI 383
gi|2612901 (AF015825) NADH dehydrogenase-like protein [Bacillus subtilis]
>gi|2633583|emb|CAB13086| (Z99110) similar to NADH
dehydrogenase [Bacillus subtilis]
Length = 392
Score = 158 bits (395), Expect = 2e-37
Identities = 116/377 (30%), Positives = 177/377 (46%), Gaps = 22/377 (5%)
Query: 27 KADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXK 86
K A +T+++K+ H +T+LH +AAG V V +KL K K+
Sbjct: 27 KEQARVTVVNKYPTHQIITELHRLAAGNVSEKAVAMPLEKLF-KGKDIDLKIAEVSSFSV 85
Query: 87 ENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLE-KIVQ 144
+ K+V G +YD ++V LG FG+PG++E+ L S DA ++ +H+E ++ +
Sbjct: 86 DKKEVALADGSTLTYDALVVGLGSVTAYFGIPGLEENSMVLKSAADANKVFQHVEDRVRE 145
Query: 145 YASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMP 204
Y+ T K A TI + G G TG+E+ GEL D ++ + + +EI + +VE P
Sbjct: 146 YSKT-----KNEADATILIGGGGLTGVELVGELADIMPNLAKKYGVDHKEIKLKLVEAGP 200
Query: 205 TILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTL 264
IL L ++A A LEK+ V LT + V + I + G + + +T
Sbjct: 201 KILPVLPDDLIERATASLEKRGVEFLTGLPVTNVEGNVIDLKDGSK--------VVANTF 252
Query: 265 IWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTP 324
+WT GVQGN E RG R N+++Q+ E ++VAGD + Y PD GRP P
Sbjct: 253 VWTGGVQGNPLVGESGLEVNRG-RATVNDFLQSTSHE--DVFVAGDSAVYFGPD-GRPYP 308
Query: 325 QIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIG--SMRLTGFW 382
N+ A + G + + GT+ S+G VA IG S L G
Sbjct: 309 PTAQIAWQMGELIGYNLFAYLEGKTLETFKPVNSGTLASLGRKDAVAIIGANSTPLKGLP 368
Query: 383 AMLMKNIVYFIYTLQIR 399
A LMK Y I+
Sbjct: 369 ASLMKEASNVRYLTHIK 385
emb|CAA71031| (Y09899) putative NADH dehydrogenase [Calothrix viguieri]
Length = 426
Score = 122 bits (302), Expect = 1e-26
Identities = 94/391 (24%), Positives = 172/391 (43%), Gaps = 19/391 (4%)
Query: 28 ADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKE 87
A+ D+TLIDK ++H L++VA G + + + + +L K KN +
Sbjct: 10 ANVDVTLIDKRNFHLFQPLLYQVATGTLSPSDISAPLRSILSKSKNTKVLLGEVKDVDTK 69
Query: 88 NKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAS 147
++VI YD ++VA G + FG KE L ++EDA+ I+ + + A
Sbjct: 70 TQEVILNDRVVRYDTLVVATGANHSYFGNDEWKEVAPGLKTIEDALEIRSRIFNAFEAAE 129
Query: 148 TEVDDEKRRALLTISVAGSGFTGIEMAGELIDW-RKKVSTDWK-IPEEEITINVVEMMPT 205
E D +KRRALLT + G G TG+E++G + + K + D++ I E I +++
Sbjct: 130 KETDPQKRRALLTFVIVGGGPTGVELSGAIAELANKTLQEDFRNIDTSETKILLLQGADR 189
Query: 206 ILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLI 265
+L + + A A LEK V T ++ + + G DE E+ + T++
Sbjct: 190 VLPGMAPSLSQAAKASLEKLGAIVQTQTRVINIENSIVTYKQG--DE---LHEIASKTIL 244
Query: 266 WTTGVQGNTAAK----TDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGR 321
W G+Q + K E ++ R+ + G K I+V GD++ + + +
Sbjct: 245 WAAGIQASPMGKILRLRTGAECDKAGRVIVEPDLSIKGH--KNIFVIGDLANFSHQNE-Q 301
Query: 322 PTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSMRLTGF 381
P P + I + G + + G++ IG V +G+++L GF
Sbjct: 302 PLPGVAPVATQEGEYVAKLIQKRLQGKTMPAFKYNDYGSLAMIGQNAAVVDLGAIKLKGF 361
Query: 382 WAMLMKNIVYFIYTLQIRSA-----HYFWRY 407
+A + +++ + ++ S + W Y
Sbjct: 362 FAWIFWLLIHIYFLIEFDSKFLVMFQWAWNY 392
emb|CAB41413.1| (AJ238250) NADH dehydrogenase [Corynebacterium glutamicum]
Length = 467
Score = 111 bits (275), Expect = 2e-23
Identities = 97/387 (25%), Positives = 176/387 (45%), Gaps = 25/387 (6%)
Query: 27 KADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXK 86
KAD D+TLID+ ++H L++VA G + + +++LG ++N
Sbjct: 33 KADVDVTLIDRTNHHLFQPLLYQVATGILSSGEIAPSTRQILGSQENVNVIKGEVTDINV 92
Query: 87 ENKQVITKHGRYS----YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKI 142
E++ V G ++ YD ++V G + FG E + S++DA+ I+ +
Sbjct: 93 ESQTVTASLGEFTRVFEYDSLVVGAGAGQSYFGNDHFAEFAPGMKSIDDALEIRARIIGA 152
Query: 143 VQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDW-RKKVSTDWK-IPEEEITINVV 200
+ A D +R LLT V G+G TG+E+AG+L + + ++ ++K I ++
Sbjct: 153 FERAEICEDPAERERLLTFVVVGAGPTGVELAGQLAEMAHRTLAGEYKNFNTNSAKIILL 212
Query: 201 EMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELP 260
+ P +L ++ A LEK V+V N + V D V +D E+ +
Sbjct: 213 DGAPQVLPPFGKRLGRNAQRTLEKMGVNVRLNAMVTNV--DATSVTYKTKDGEE--HTIE 268
Query: 261 THTLIWTTGVQ----GNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIE 316
+ IW+ GV G A+ ET+R R+ N+ + +VG + K ++V GD+ Y
Sbjct: 269 SFCKIWSAGVAASPLGKLVAEQTGVETDRAGRVMVNDDL-SVG-DQKNVFVVGDMMNY-- 324
Query: 317 PDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHES-KY--QGTMVSIGSTWGVAKI 373
P + I A++ G S + E+ Y +G+M +I V K+
Sbjct: 325 ----NNLPGVAQVAIQSGEYVAEQIEAEVEGRSNTEREAFDYFDKGSMATISRFSAVVKM 380
Query: 374 GSMRLTGFWAMLMKNIVYFIYTLQIRS 400
G + +TGF ++ V+ ++ + R+
Sbjct: 381 GKVEVTGFIGWVLWLAVHIMFLVGFRN 407
ref|NP_013586.1|NDI1| NADH dehydrogenase (ubiquinone); Ndi1p
>gi|417349|sp|P32340|NDI1_YEAST ROTENONE-INSENSITIVE
NADH-UBIQUINONE OXIDOREDUCTASE PRECURSOR (INTERNAL NADH
DEHYDROGENASE) >gi|283215|pir||S26704 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain NDI1 - yeast
(Saccharomyces cerevisiae) >gi|805022|emb|CAA89160|
(Z49218) Ndi1p [Saccharomyces cerevisiae]
Length = 513
Score = 110 bits (273), Expect = 3e-23
Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 20/223 (8%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAST-EVDDEKRRAL 158
YDY+I A+G EPN FG+PGV ++G L + +++ I+R ++ A+ D +RR L
Sbjct: 169 YDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRL 228
Query: 159 LTISVAGSGFTGIEMAGELIDWRKKVSTDWK--IPE--EEITINVVEMMPTILNTLDRKQ 214
L+I V G G TG+E AGEL D+ V D + +P EE+ I++VE +P +LN ++K
Sbjct: 229 LSIVVVGGGPTGVEAAGELQDY---VHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKL 285
Query: 215 ADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNT 274
+ A ++LE ++ V + +V + + D + + +P TLIW TG +
Sbjct: 286 SSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARP 345
Query: 275 AAKTDL-------NETERGHRLQANEYMQAVGFEGKGIYVAGD 310
TDL N ++RG L N+++Q G I+ GD
Sbjct: 346 VI-TDLFKKIPEQNSSKRG--LAVNDFLQVKG--SNNIFAIGD 383
emb|CAA15447.1| (AL008609) dehydrogenase [Mycobacterium leprae]
Length = 466
Score = 109 bits (269), Expect = 1e-22
Identities = 94/393 (23%), Positives = 179/393 (44%), Gaps = 28/393 (7%)
Query: 23 SKKLK-ADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXX 81
+KKLK A+ DI LI + ++H L++VA G + + + +L K++N
Sbjct: 30 AKKLKRANVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLRKQRNIQVLLGNV 89
Query: 82 XXXXKENKQVITKHGRYSY----DYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKR 137
N+ V+++ ++Y D +IVA G + FG E + S++DA+ ++
Sbjct: 90 THIDLANQCVVSELLGHTYETLYDSLIVAAGAGQSYFGNDQFAEFAPGMKSIDDALELRG 149
Query: 138 HLEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAG---ELIDWRKKVSTDWKIPEEE 194
+ + A D E+R LLT +V G+G TG+EMAG EL D K +I +
Sbjct: 150 RILSAFEQAERSNDPERREKLLTFTVVGAGPTGVEMAGQIAELADHTLK-GAFRRIDSTK 208
Query: 195 ITINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEK 254
+ +++ P +L + K +A A L+K V + + + +V ++ I V +D +
Sbjct: 209 ARVVLLDAAPAVLPPMGEKLGQRAAARLQKMGVEIQLSAMVTDVDRNGITV----QDSDG 264
Query: 255 VAKELPTHTLIWTTGVQ----GNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGD 310
+ + + +W+ GV G A+ L E + R++ + G+ + ++V GD
Sbjct: 265 TVRRIESACKVWSAGVSASRLGRDLAEQSLVELDWAGRVKVLPDLSIPGY--RNVFVVGD 322
Query: 311 VSGYIEPDTGRPTPQIVXXXXXXXXXXXXNILADI---NGGSKHKHESKYQGTMVSIGST 367
++ P + NI A++ N + + +G+M ++
Sbjct: 323 MAAI------DGVPGVAQGAIQGAKYVANNIKAELGEANPAEREPFQYFDKGSMATVSRF 376
Query: 368 WGVAKIGSMRLTGFWAMLMKNIVYFIYTLQIRS 400
VAKIG + +GF A LM +++ +Y + ++
Sbjct: 377 SAVAKIGPLEFSGFIAWLMWLVLHLMYLIGFKT 409
gi|2708705 (AF038423) NADH dehydrogenase [Mycobacterium smegmatis]
Length = 457
Score = 107 bits (265), Expect = 3e-22
Identities = 92/387 (23%), Positives = 171/387 (43%), Gaps = 25/387 (6%)
Query: 27 KADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXK 86
+AD D+ LI + ++H L++VA G + + + +L K+KN
Sbjct: 32 RADVDVKLIARTTHHLFQPLLYQVATGIISEGEIAPATRVILRKQKNAQVLLGDVTHIDL 91
Query: 87 ENKQV--ITKHGRYS--YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKI 142
ENK V + YS YD +I+A G + FG E + S++DA+ ++ +
Sbjct: 92 ENKTVDSVLLGHTYSTPYDSLIIAAGAGQSYFGNDHFAEFAPGMKSIDDALELRGRILGA 151
Query: 143 VQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKV--STDWKIPEEEITINVV 200
+ A D +R LLT +V G+G TG+EMAG++ + + + I E + ++
Sbjct: 152 FEQAERSSDPVRRAKLLTFTVVGAGPTGVEMAGQIAELADQTLRGSFRHIDPTEARVILL 211
Query: 201 EMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELP 260
+ P +L + K KA A LEK V V + +V ++ I V +D + + +
Sbjct: 212 DAAPAVLPPMGEKLGKKARARLEKMGVEVQLGAMVTDVDRNGITV----KDSDGTIRRIE 267
Query: 261 THTLIWTTGVQ----GNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIE 316
+ +W+ GV G A+ E +R R++ + G ++V GD++
Sbjct: 268 SACKVWSAGVSASPLGKDLAEQSGVELDRAGRVKVQPDLTLPGH--PNVFVVGDMAAV-- 323
Query: 317 PDTGRPTPQIVXXXXXXXXXXXXNILADINGGS-KHKHESKY--QGTMVSIGSTWGVAKI 373
P + I +++G S K + +Y +G+M ++ VAK+
Sbjct: 324 ----EGVPGVAQGAIQGGRYAAKIIKREVSGTSPKIRTPFEYFDKGSMATVSRFSAVAKV 379
Query: 374 GSMRLTGFWAMLMKNIVYFIYTLQIRS 400
G + GF+A L +++ +Y + ++
Sbjct: 380 GPVEFAGFFAWLCWLVLHLVYLVGFKT 406
gb|AAF10523.1|AE001947_6 (AE001947) NADH dehydrogenase II [Deinococcus radiodurans]
Length = 379
Score = 106 bits (263), Expect = 5e-22
Identities = 98/378 (25%), Positives = 159/378 (41%), Gaps = 28/378 (7%)
Query: 34 LIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKENKQVIT 93
LI++++YHT T+LHE AA T + G + ++V
Sbjct: 29 LIEQNAYHTFETRLHEAAAHNARITLPLIPLLRGTGVHLEQAKVDYVDL----DEREVGL 84
Query: 94 KHGRY-SYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDD 152
K GR YD ++V LG N + +PG+ E+ L L DA I + + D
Sbjct: 85 KDGRVLMYDTLVVGLGSVTNFYRIPGLAENATELKQLSDADDIFNFVNRTF--------D 136
Query: 153 EKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDR 212
+ I V G+G TG+E+ EL + +S + +P I +VE P IL LD
Sbjct: 137 NGYQGNRDIVVGGAGLTGVELVTELAQRAELLSKERGLP--PFNIYLVEAGPKILPILDE 194
Query: 213 KQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQG 272
KA LE + ++ H I++ D + V E+KV K +IWT G+Q
Sbjct: 195 ALRAKAQQTLEDYGIKIMVGHRIMQATADSVTVQTAD-GEQKVIK---AGKIIWTGGIQA 250
Query: 273 NTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVXXXXX 332
+ E G R+ +E+++A G+ +++ GD+ G G+P P
Sbjct: 251 RDVVRGQKIEKGPGGRVVVDEFLRAKGY--PDVFIIGDM-GLALNQQGKPVPTTAQHAGQ 307
Query: 333 XXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSMRLTGFWAMLMKNIVYF 392
NI+ + +E G VS+G G+ +G M+L W + I
Sbjct: 308 QGRTTAKNIMNMVQNKPLVPYEPTTLGEFVSLG---GLMAVGWMKLP--WNQKLA-ITGG 361
Query: 393 IYTLQIRSAHYFWRYALD 410
I + R++ + WR ++D
Sbjct: 362 IAHVMKRASEWKWRSSVD 379
emb|CAB06133| (Z83859) ndh [Mycobacterium tuberculosis]
Length = 463
Score = 106 bits (263), Expect = 5e-22
Identities = 91/392 (23%), Positives = 176/392 (44%), Gaps = 26/392 (6%)
Query: 23 SKKLK-ADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXX 81
+KKLK AD DI LI + ++H L++VA G + + + +L K++N
Sbjct: 30 AKKLKRADVDIKLIARTTHHLFQPLLYQVATGIISEGEIAPPTRVVLRKQRNVQVLLGNV 89
Query: 82 XXXXKENKQVITKHGRYSY----DYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKR 137
+ V+++ ++Y D +IVA G + FG E + S++DA+ ++
Sbjct: 90 THIDLAGQCVVSELLGHTYQTPYDSLIVAAGAGQSYFGNDHFAEFAPGMKSIDDALELRG 149
Query: 138 HLEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKV--STDWKIPEEEI 195
+ + A D E+R LLT +V G+G TG+EMAG++ + + I +
Sbjct: 150 RILSAFEQAERSSDPERRAKLLTFTVVGAGPTGVEMAGQIAELAEHTLKGAFRHIDSTKA 209
Query: 196 TINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKV 255
+ +++ P +L + K +A A L+K V + + +V ++ I V +D +
Sbjct: 210 RVILLDAAPAVLPPMGAKLGQRAAARLQKLGVEIQLGAMVTDVDRNGITV----KDSDGT 265
Query: 256 AKELPTHTLIWTTGVQ----GNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDV 311
+ + + +W+ GV G A+ E +R R+Q + G+ ++V GD+
Sbjct: 266 VRRIESACKVWSAGVSASRLGRDLAEQSRVELDRAGRVQVLPDLSIPGY--PNVFVVGDM 323
Query: 312 SGYIEPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHES-KY--QGTMVSIGSTW 368
+ P + I A++ G + + E +Y +G+M ++
Sbjct: 324 AAV------EGVPGVAQGAIQGAKYVASTIKAELAGANPAEREPFQYFDKGSMATVSRFS 377
Query: 369 GVAKIGSMRLTGFWAMLMKNIVYFIYTLQIRS 400
VAKIG + +GF A L+ +++ Y + ++
Sbjct: 378 AVAKIGPVEFSGFIAWLIWLVLHLAYLIGFKT 409
emb|CAA07265.1| (AJ006852) alternative NADH-dehydrogenase [Yarrowia lipolytica]
Length = 582
Score = 105 bits (260), Expect = 1e-21
Identities = 68/219 (31%), Positives = 111/219 (50%), Gaps = 9/219 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRALL 159
+DY++V +G + FG+PGV+E+ L + DA +I+R L ++ A E D E R+ LL
Sbjct: 218 FDYLVVGVGAMSSTFGIPGVQENACFLKEIPDAQQIRRTLMDCIEKAQFEKDPEVRKRLL 277
Query: 160 TISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE--EEITINVVEMMPTILNTLDRKQADK 217
V G G TG+E A EL D+ + W IP+ ++ + +VE +P +L + +K D
Sbjct: 278 HTVVVGGGPTGVEFAAELQDFFEDDLRKW-IPDIRDDFKVTLVEALPNVLPSFSKKLIDY 336
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAK 277
+ + +LT + V ++ I+ D K E+P TL+W TG +
Sbjct: 337 TEKTFSDEKISILTKTMVKSVDENVIRAEQTKGDGTKETLEMPYGTLVWATGNTVRPVVR 396
Query: 278 TDLNE--TERGHR--LQANEYMQAVGFEGKGIYVAGDVS 312
+++ ++G R L NEY+ G E GI+ GD S
Sbjct: 397 ELMSKIPAQKGSRRGLLVNEYLVVEGTE--GIWALGDCS 433
dbj|BAA17787| (D90909) NADH dehydrogenase [Synechocystis sp.]
Length = 445
Score = 104 bits (258), Expect = 2e-21
Identities = 91/385 (23%), Positives = 172/385 (44%), Gaps = 33/385 (8%)
Query: 27 KADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXK 86
++ DITLIDK ++H L++VA G + + + +L +KN
Sbjct: 30 RSPVDITLIDKRNFHLFQPLLYQVATGSLSPADIASPLRGVLKGQKNIRVLMDKVIDIDP 89
Query: 87 ENKQVITK-HGRYSYDYVIVALGGEPNDFG-------VPGVKEHGFTLWSLEDAMRIKRH 138
+ ++V+ + H +YD+++VA G + FG PG+K ++EDA+ I++
Sbjct: 90 DKQKVVLEDHAPIAYDWLVVATGVSHHYFGNDHWAALAPGLK-------TIEDALTIRQR 142
Query: 139 LEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTD--WKIPEEEIT 196
+ + A E + E+++A LT + G+G TG+E+AG + + D +I +
Sbjct: 143 IFAAFEAAEKESNPERQQAWLTFVIVGAGPTGVELAGAIAEIAHSSLKDNFHRIDTRQAK 202
Query: 197 INVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVA 256
I ++E + +L + + +A LE V VLT + ++ + + V+ G+ E V
Sbjct: 203 ILLIEGVDRVLPPYKPQLSARAQRDLEDLGVTVLTERMVTDINPEQVTVHNNGQTETIVT 262
Query: 257 KELPTHTLIWTTGVQGNTAAKTDLNET----ERGHRLQANEYMQAVGFEGKGIYVAGDVS 312
K T++W GV+ ++ K + T +R R+ N + F+ I+V GD++
Sbjct: 263 K-----TVLWGAGVRASSLGKIIGDRTGAELDRAGRVVVNPDLSVASFD--NIFVLGDLA 315
Query: 313 GYIEPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKY--QGTMVSIGSTWGV 370
Y +P P + I A + + +Y G++ IG V
Sbjct: 316 NY-SHQGDQPLPGVAPVAMQEAAYLSKLIPARLAEKEQIMVPFRYIDYGSLAVIGQNKAV 374
Query: 371 AKIGSMRLTGF--WAMLMKNIVYFI 393
+G + TG W + + VY++
Sbjct: 375 VDLGFAQFTGLVAWMIWVWAHVYYL 399
emb|CAA43787| (X61590) NADH dehydrogenase (ubiquinone) [Saccharomyces
cerevisiae]
Length = 513
Score = 102 bits (252), Expect = 9e-21
Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 12/219 (5%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAST-EVDDEKRRAL 158
YDY+I A+G EPN FG+PGV ++G + +++ ++R + A+ D +RR
Sbjct: 169 YDYLISAVGAEPNTFGIPGVTDYGHFTKEIPNSLEMRRTFAANTEKANLLPKGDPERRRT 228
Query: 159 LTISVAGSGFTGIEMAGELIDWRKKVSTDWKIP-EEEITINVVEMMPTILNTLDRKQADK 217
+I V G G TG+E AGE D+ + + + EE+ I++VE P +LN ++K +
Sbjct: 229 TSIVVVGGGPTGVEAAGETQDYVHQDTRKFTPALAEEVQIHLVEATPIVLNMFEKKTSSY 288
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTG-----VQG 272
A ++LE ++ V T + +V + + D + + +P TLIW TG V
Sbjct: 289 AQSHLENTSIKVHTRTAVAKVEEKQLLAKTKHEDGKMTEETIPYGTLIWATGNKARPVIT 348
Query: 273 NTAAK-TDLNETERGHRLQANEYMQAVGFEGKGIYVAGD 310
+T K + N ++RG L N+++Q G I+ GD
Sbjct: 349 DTFKKIPEQNSSKRG--LAVNDFLQVKG--SNNIFAIGD 383
ref|NP_013865.1|YMR145C| Ymr145cp >gi|732163|sp|P40215|YM23_YEAST HYPOTHETICAL 62.8 KD
PROTEIN IN RPS16A-TIF34 INTERGENIC REGION
>gi|1077956|pir||S50401 hypothetical protein YMR145c -
yeast (Saccharomyces cerevisiae)
>gi|606443|emb|CAA87359| (Z47071) similar to
rotenone-insensitive NADH-ubiquinone [Saccharomyces
cerevisiae]
Length = 560
Score = 101 bits (248), Expect = 3e-20
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIK-RHLEKIVQYASTEVDDEKRRAL 158
YDY++V +G +PN FG PGV E+ L + DA I+ + + I + AS D +R L
Sbjct: 215 YDYLVVGVGAQPNTFGTPGVYEYSSFLKEISDAQEIRLKIMSSIEKAASLSPKDPERARL 274
Query: 159 LTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE--EEITINVVEMMPTILNTLDRKQAD 216
L+ V G G TG+E A EL D+ + W +PE +EI + +VE +P ILN D+ D
Sbjct: 275 LSFVVVGGGPTGVEFAAELRDYVDQDLRKW-MPELSKEIKVTLVEALPNILNMFDKYLVD 333
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAA 276
A +++ + + + +V I G D E + P L+W TG +
Sbjct: 334 YAQDLFKEEKIDLRLKTMVKKVDATTITAKTGDGDIENI----PYGVLVWATGNAPREVS 389
Query: 277 K---TDLNETERGHRLQANEYMQAVGFEGKGIYVAGD 310
K T L E + L + +Q +G +G I+ GD
Sbjct: 390 KNLMTKLEEQDSRRGLLIDNKLQLLGAKG-SIFAIGD 425
gb|AAD56918.1|AF180145_10 (AF180145) NADH dehydrogenase [Zymomonas mobilis]
Length = 381
Score = 97.5 bits (239), Expect = 3e-19
Identities = 81/321 (25%), Positives = 135/321 (41%), Gaps = 27/321 (8%)
Query: 20 RELSKKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXX 79
R L ++ +AD+ L+D+ H HEVA G + + + + GK
Sbjct: 24 RALGERFGKEADVILVDRSPTHVWKPLFHEVATGALDADLDEVSY-RYHGKHWGYHYVRG 82
Query: 80 XXXXXXKENKQVITK------------HGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLW 127
++N ++I + R YDY+++ALG NDF PGV+E+ L
Sbjct: 83 TLEDIDRKNHEIILEPLVDEEGHKISDQERLRYDYLVLALGSVANDFNTPGVRENCLFLD 142
Query: 128 SLEDAMRIKRHLEKIVQYAS-TEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVST 186
S A R + HL AS T + + ++V G+G TG+E++ EL + ++
Sbjct: 143 SRAQADRFREHLFDACASASRTMIAQPGMEKPVRVTVIGAGATGVELSAELYNTAIELGN 202
Query: 187 DW--KIPEEEITINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK 244
K + + +VE P IL L A+ AH L++ V + TN +VE + IK
Sbjct: 203 FGLEKFGANCMQVTLVEAAPRILAPLPEFMAEDAHTVLQRLGVDIKTNTMVVEAGEGFIK 262
Query: 245 VNVGGRDEEKVAKELPTHTLIWTTGVQG-NTAAKTDLNETERGHRLQANEYMQAVGFEGK 303
G E + +W GV+ + +K + E R +++ +Q+
Sbjct: 263 TKDGQTIESDIQ--------LWAAGVKAPDFLSKVEGLEVARSNQIIVKPTLQST--TDD 312
Query: 304 GIYVAGDVSGYIEPDTGRPTP 324
I+ GD P+ RP P
Sbjct: 313 RIFAMGDCCSCKLPEAERPVP 333
ref|NP_010198.1|YDL085W| Ydl085wp >gi|2131327|pir||S67621 hypothetical protein YDL085w -
yeast (Saccharomyces cerevisiae)
>gi|1431110|emb|CAA98651| (Z74133) ORF YDL085w
[Saccharomyces cerevisiae]
Length = 545
Score = 97.1 bits (238), Expect = 4e-19
Identities = 86/337 (25%), Positives = 143/337 (41%), Gaps = 45/337 (13%)
Query: 99 SYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAST-EVDDEKRRA 157
SYDY++V++G + F +PGV + L +EDA I+ L K ++ AS+ V+D +R+
Sbjct: 199 SYDYLVVSVGAKTTTFNIPGVYGNANFLKEIEDAQNIRMKLMKTIEQASSFPVNDPERKR 258
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE--EEITINVVEMMPTILNTLDRKQA 215
LLT V G G TG+E A EL D+ + W +P+ +E+ + ++E +P ILN D+
Sbjct: 259 LLTFVVVGGGPTGVEFAAELQDYINQDLRKW-MPDLSKEMKVILIEALPNILNMFDKTLI 317
Query: 216 DKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTA 275
A + + + N + V +I+ G+ + + L+W TG +
Sbjct: 318 KYAEDLFARDEIDLQVNTAVKVVEPTYIRTLQNGQTNTDIEYGM----LVWATGNEPIDF 373
Query: 276 AKTDLN---ETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTG-RPTPQIVXXXX 331
+KT ++ E L N+ ++ +G E IY GD + + TG PT Q+
Sbjct: 374 SKTLMSRIPEQTNRRGLLINDKLELLGSE-NSIYAIGDCTAH----TGFFPTAQVAHQEG 428
Query: 332 XXXXXXXXNIL------------------------ADINGGSKHKHESKYQGTMVSIGST 367
L ++ K K+ G + IGS
Sbjct: 429 EYLAKILDKKLQIEQLEWDMLNSTDETEVSRLQKEVNLRKSKLDKFNYKHMGALAYIGSE 488
Query: 368 WGVAKI----GSMRLTGFWAMLMKNIVYFIYTLQIRS 400
+A + S +L G +A L Y L IR+
Sbjct: 489 TAIADLHMGDSSYQLKGMFAFLFWKSAYLAMCLSIRN 525
emb|CAB16382.1| (Z99260) putative nadh-dehydrogenase [Schizosaccharomyces pombe]
Length = 551
Score = 95.6 bits (234), Expect = 1e-18
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIK-RHLEKIVQYASTEVDDEKRRAL 158
YDY++ + G E F +PG+ E+G L + DA +I+ R L + Q ++ E RR
Sbjct: 195 YDYLVCSHGAETQTFNIPGIAEYGCFLKEIWDAQKIRARILHCLEQAQFKDLPAETRRRY 254
Query: 159 LTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE--EEITINVVEMMPTILNTLDRKQAD 216
+ V G G TG+E AGE+ D+ + W PE ++ + +VE +P++L K D
Sbjct: 255 VHTVVVGGGPTGMEFAGEMADFIEDDLKSW-YPELADDFAVTLVEALPSVLPMFSAKLRD 313
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAA 276
+ + ++ + TN + +V ++I V V D K + +P L+W G +
Sbjct: 314 YTQSLFDSSHIKIRTNTALKKVTAENIHVEVKNPDGSKQEEVIPYGLLVWAGGNRARPLT 373
Query: 277 KTDLNETERGHR---LQANEYMQAVGFEGKGIYVAGD 310
K + +E + L +EY++ G+ K I+ GD
Sbjct: 374 KKLMEGSEEQNNRRGLVVDEYLKLKGY--KDIFALGD 408
sp|P00393|DHNA_ECOLI NADH DEHYDROGENASE >gi|66211|pir||DEECR NADH dehydrogenase (EC
1.6.99.3) - Escherichia coli >gi|581140|emb|CAA23586|
(V00306) NADH dehydrogenase [Escherichia coli]
>gi|1651546|dbj|BAA35924| (D90746) NADH dehydrogenase
(EC 1.6.99.3) [Escherichia coli] >gi|1787352 (AE000211)
respiratory NADH dehydrogenase [Escherichia coli]
Length = 434
Score = 95.6 bits (234), Expect = 1e-18
Identities = 103/402 (25%), Positives = 172/402 (42%), Gaps = 40/402 (9%)
Query: 21 ELSKKL--KADADITLIDKHSYHTTMTQLHEVAAGRVP---------FTTVQYDFQKLLG 69
+L KL K A ITL+D++ H LHEVA G + + FQ LG
Sbjct: 23 QLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLG 82
Query: 70 K--RKNXXXXXXXXXXXXKENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLW 127
+ E +++ + +YD +++ALG NDF PGVKE+ L
Sbjct: 83 SVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLD 142
Query: 128 SLEDAMRIKRH-LEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKV-S 185
+ A R + L ++Y++ + K + I++ G G TG+E++ EL + K++ S
Sbjct: 143 NPHQARRFHQEMLNLFLKYSANLGANGK----VNIAIVGGGATGVELSAELHNAVKQLHS 198
Query: 186 TDWK-IPEEEITINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK 244
+K + E + + +VE IL L + + AH L K V VLT + + +
Sbjct: 199 YGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLH 258
Query: 245 VNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAKTDLN--ETERGHRLQANEYMQAVGFEG 302
+D E + +L ++W G++ K D+ ET R ++L +Q
Sbjct: 259 T----KDGEYIEADL----MVWAAGIKAPDFLK-DIGGLETNRINQLVVEPTLQTT--RD 307
Query: 303 KGIYVAGDVSGYIEPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMV 362
IY GD + P+ G P+ NILA +NG ++ K G++V
Sbjct: 308 PDIYAIGDCASCPRPEGGFVPPR-AQAAHQMATCAMNNILAQMNGKPLKNYQYKDHGSLV 366
Query: 363 S------IGSTWGVAKIGSMRLTGFWAMLMKNIVYFIYTLQI 398
S +GS G GSM + G A + +Y ++ + +
Sbjct: 367 SLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIAL 408
gb|AAD20915.1| (AC006234) putative NADH-ubiquinone oxireductase [Arabidopsis
thaliana]
Length = 582
Score = 95.2 bits (233), Expect = 2e-18
Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 9/217 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYAS-TEVDDEKRRAL 158
YD +I+A+G +PN F PGV+EH + L EDA+ I+ + + AS + +E+R+ +
Sbjct: 167 YDILILAVGAKPNTFNTPGVEEHAYFLKEAEDALNIRHSVIDCFERASLPNLTEEERKKI 226
Query: 159 LTISVAGSGFTGIEMAGELIDWR-KKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADK 217
L V G G TG+E + EL D+ + V+ + +E I ++E ILN D++
Sbjct: 227 LHFVVVGGGPTGVEFSAELHDFLVQDVAKIYPKVQEFTKITLLEAGDHILNMFDKRITAF 286
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAK 277
A ++ + + T +V V D I R+ K+ E P ++W+TG+ K
Sbjct: 287 AEEKFQRDGIDLKTGSMVVGVTADEISTK--ERETGKIVSE-PYGMVVWSTGIGSRPVIK 343
Query: 278 TDLNETERGHR--LQANEYMQAVGFEGKGIYVAGDVS 312
+ + +G R L +E+++ G + G+Y GD +
Sbjct: 344 DFMQQIGQGQRRVLATDEWLRVEGCD--GVYALGDTA 378
dbj|BAA18722| (D90916) NADH dehydrogenase [Synechocystis sp.]
Length = 524
Score = 94.8 bits (232), Expect = 2e-18
Identities = 87/375 (23%), Positives = 153/375 (40%), Gaps = 30/375 (8%)
Query: 32 ITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKENKQV 91
I L++ + L+E+ +P + V ++KLL KE + V
Sbjct: 73 IVLVEPQANFVFKPMLYELLTEELPESVVCPSYEKLLADSGIDIVQARVADVQLKEKRLV 132
Query: 92 ITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVD 151
+ YDY+++A+G G G E+ F S +A+ ++ HL+ ++ + T D
Sbjct: 133 LDSGQEQHYDYLVLAVGSVQGYLGAQGAAENAFAFRSQTEAIALRDHLKACLEKSLTTAD 192
Query: 152 DEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE----EEITINVVEMMPTIL 207
++ LLT+++ G+G G+EMA L D + W +P ++ I +V P IL
Sbjct: 193 QAEKERLLTVAIVGAGPAGVEMAATLAD----LLPSWYVPMGGNINDLKIYLVNHAPGIL 248
Query: 208 -----NTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTH 262
+ L R ++ A V + G+ V + ++ G +E + L T
Sbjct: 249 AGDANSGLKRCALEELQA--RTIPVTLKLGVGVKSVTPESLQFVETGEEE---LRHLDTG 303
Query: 263 TLIWTTGVQGNTAAKT-----DLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEP 317
T IWT G N KT E +R + +Q F ++ AGD +
Sbjct: 304 TTIWTAGTAVNPLLKTLKEQIPAEELDRHGQPLVTSTLQLPSF--PQVFAAGDCVTVKD- 360
Query: 318 DTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKI-GSM 376
P P + N++A NG + + +GT++ +G GVA + +
Sbjct: 361 ---NPKPALAQIAYQQGAAIAKNLMAVHNGKPLVSPDPQLRGTLMKLGLNNGVANLFDRV 417
Query: 377 RLTGFWAMLMKNIVY 391
R+ G L++N Y
Sbjct: 418 RIQGKAGDLLRNATY 432
gb|AAD48975.1|AF162444_7 (AF162444) contains similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I;
score=26.1, E=0.0008, N=1 [Arabidopsis thaliana]
Length = 583
Score = 91.3 bits (223), Expect = 2e-17
Identities = 71/297 (23%), Positives = 135/297 (44%), Gaps = 24/297 (8%)
Query: 31 DITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKE--- 87
++ +I +Y L V G V +V + + G++KN +
Sbjct: 83 EVQIISPRNYFAFTPLLPSVTCGTVEARSVVEPIRNI-GRKKNVDTSYLEAECFKIDPAS 141
Query: 88 ------NKQVITKHGR----YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKR 137
+KQ ++ +G+ YDY+++A G + N F +PGV+E+ L +EDA RI++
Sbjct: 142 KKVYCRSKQGLSSNGKKEFSVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRK 201
Query: 138 HLEKIVQYAS-TEVDDEKRRALLTISVAGSGFTGIEMAGELIDW-RKKVSTDWKIPEEEI 195
+ + AS E+ DE+R+ +L V G G TG+E A EL D+ + + + + + +
Sbjct: 202 TVIDSFEKASLPELSDEERKRILHFVVVGGGPTGVEFAAELHDFVTEDLVSLYPRAKGSV 261
Query: 196 TINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKV 255
I ++E IL D++ + A + + V + +V + I G +
Sbjct: 262 RITLLEAADHILTMFDKRITEFAEEKFSRDGIDVKLGSMVTKVNEKDISAKTKGGE---- 317
Query: 256 AKELPTHTLIWTTGVQGNTAAKTDLNETERGHR--LQANEYMQAVGFEGKGIYVAGD 310
+P ++W+TG+ K + + +G+R L +E+++ G + IY GD
Sbjct: 318 VSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRALATDEWLRVEGTD--NIYALGD 372
emb|CAB06598| (Z84725) hypothetical protein Rv0392c [Mycobacterium tuberculosis]
Length = 470
Score = 87.8 bits (214), Expect = 3e-16
Identities = 81/385 (21%), Positives = 159/385 (41%), Gaps = 19/385 (4%)
Query: 27 KADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXK 86
+AD DITLI K + H L++VA G + + + +L ++KN
Sbjct: 35 RADVDITLISKTTTHLFQPLLYQVATGILSEGDIAPTTRLILRRQKNVRVLLGEVNAIDL 94
Query: 87 ENKQVITKHGRYS----YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKI 142
+ + V +K + YD +IVA G + + FG + +++DA+ ++ +
Sbjct: 95 KAQTVTSKLMDMTTVTPYDSLIVAAGAQQSYFGNDEFATFAPGMKTIDDALELRGRILGA 154
Query: 143 VQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDW--RKKVSTDWKIPEEEITINVV 200
+ A D +R LT V G+G TG+E+AG++++ R I E + ++
Sbjct: 155 FEAAEVSTDHAERERRLTFVVVGAGPTGVEVAGQIVELAERTLAGAFRTITPSECRVILL 214
Query: 201 EMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELP 260
+ P +L + K KA LEK +V V N + V I + ++++ + +
Sbjct: 215 DAAPAVLPPMGPKLGLKAQRRLEKMDVEVQLNAMVTAVDYKGITI----KEKDGGERRIE 270
Query: 261 THTLIWTTGVQGNTAAK-----TDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYI 315
+W GV + K +D E +R R+ + G ++V GD+
Sbjct: 271 CACKVWAAGVAASPLGKMIAEGSDGTEIDRAGRVIVEPDLTVKGH--PNVFVVGDL--MF 326
Query: 316 EPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGS 375
P + + + + ++ +G+M +I VA++G
Sbjct: 327 VPGVPGVAQGAIQGARYATTVIKHMVKGNDDPANRKPFHYFNKGSMATISRHSAVAQVGK 386
Query: 376 MRLTGFWAMLMKNIVYFIYTLQIRS 400
+ G++A L +++ +Y + R+
Sbjct: 387 LEFAGYFAWLAWLVLHLVYLVGYRN 411
emb|CAA22033| (AL033505) putative dehydrogenase [Streptomyces coelicolor]
Length = 629
Score = 87.4 bits (213), Expect = 4e-16
Identities = 83/377 (22%), Positives = 153/377 (40%), Gaps = 39/377 (10%)
Query: 20 RELSKKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDF-------QKLLGKRK 72
R LS+ + ADITL++ Y + L +VAAG + V + +LG+
Sbjct: 20 RTLSRLTRHQADITLLNPTDYFLYLPLLPQVAAGILEPRRVSVSLSGTLPHVRLVLGEAD 79
Query: 73 NXXXXXXXXXXXXKENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDA 132
E + G +YD +++A G +PGV EH L +A
Sbjct: 80 GIDLDGRTVHYTGPEGGE-----GTLAYDRLVLAAGSVNKLLPIPGVAEHAHGFRGLPEA 134
Query: 133 MRIKRHLEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPE 192
+ ++ H+ + V+ A+ D + A T V G+G+TG E+A + TD ++
Sbjct: 135 LYLRDHVTRQVELAAAADDRAECAARCTFVVVGAGYTGTEVAA-----HGAMYTDAQVRR 189
Query: 193 EEITIN------VVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVN 246
+ ++++ P ++ +D + + A L ++ V V + E D + +
Sbjct: 190 HPMRTGMRPRWMLLDVAPRVMPEMDERLSRTAERVLRQRGVDVRMGTSVKEATHDGVVLT 249
Query: 247 VGGRDEEKVAKELPTHTLIWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIY 306
G + T TL+W GV+ + ++ ERG RL + ++Q G ++
Sbjct: 250 DG--------STVDTRTLVWCVGVRPDPLVESLGLPMERG-RLLVDPHLQVPG--RPELF 298
Query: 307 VAGDVSGYIEPDTGRP---TPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVS 363
GDV+ PD +P TP N++A + G + + + G +V
Sbjct: 299 ACGDVAAV--PDLNQPGQYTPMTAQHAWRHGKVCAHNVVASLGRGQRRAYRHRDMGFVVD 356
Query: 364 IGSTWGVAKIGSMRLTG 380
+G A + ++G
Sbjct: 357 LGGAKAAANPLGLPMSG 373
gb|AAC31853.1| (AC004680) putative NADH dehydrogenase (ubiquinone oxidoreductase)
[Arabidopsis thaliana]
Length = 508
Score = 87.0 bits (212), Expect = 5e-16
Identities = 76/292 (26%), Positives = 135/292 (46%), Gaps = 18/292 (6%)
Query: 97 RYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTE-VDDEKR 155
+ +YD +++A G E + FG+ GV E+ L + A I+R L + + T + E++
Sbjct: 177 KIAYDKLVIASGAEASTFGIHGVMENAIFLREVHHAQEIRRKLLLNLMLSDTPGISKEEK 236
Query: 156 RALLTISVAGSGFTGIEMAGELIDW-RKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQ 214
R LL V G G TG+E +GEL D+ K V + +++I + ++E IL++ D +
Sbjct: 237 RRLLHCVVVGGGPTGVEFSGELSDFIMKDVRQRYAHVKDDIHVTLIEAR-DILSSFDDRL 295
Query: 215 ADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNT 274
A L K V + GIV+ + + G E+P L+W+TGV +
Sbjct: 296 RRYAIKQLNKSGVRFV--RGIVKDVQSQKLILDDG-------TEVPYGLLVWSTGVGPSP 346
Query: 275 AAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVXXXXXXX 334
++ + R+ +E+M+ + ++ GD SGY+E TG+PT +
Sbjct: 347 FVRSLGLPKDPTGRIGIDEWMRVPSVQ--DVFAIGDCSGYLE-TTGKPTLPALAQVAERE 403
Query: 335 XXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSMRLTGFWAMLM 386
N+L I G+ + S + + +G + +GSM G + L+
Sbjct: 404 GKYLANLLNAIGKGNGGRANSAKE---IELGVPFVYKHLGSMATIGRYKALV 452
emb|CAB52797.1| (AJ245862) putative external rotenone-insensitive NADH
dehydrogenase [Solanum tuberosum]
Length = 577
Score = 86.6 bits (211), Expect = 6e-16
Identities = 60/215 (27%), Positives = 104/215 (47%), Gaps = 9/215 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRH-LEKIVQYASTEVDDEKRRAL 158
YDY++VA+G + N F PGV EH L +EDA RI+R ++ + + +E+RR
Sbjct: 161 YDYLVVAVGAQVNTFNTPGVMEHCHFLKEVEDAQRIRRTVIDCFEKSVIPGLSEEERRTN 220
Query: 159 LTISVAGSGFTGIEMAGELIDW-RKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADK 217
L + G G TG+E A EL D+ + + + ++ + I V++ ILNT D + +
Sbjct: 221 LHFVIVGGGPTGVEFAAELHDYVYEDLVKIYPSVKDFVKITVIQSGDHILNTFDERISSF 280
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAK 277
A ++ + V T + V+ I + V + E+P ++W+TGV K
Sbjct: 281 AEQKFQRDGIEVSTGCRVTSVSDHFINMKVKSTGKH---VEVPYGMVVWSTGVGTRPFVK 337
Query: 278 TDLNET--ERGHRLQANEYMQAVGFEGKGIYVAGD 310
+ + E+ L +E+++ G +Y GD
Sbjct: 338 DFMEQVGQEKRRILATDEWLRVKGC--SNVYALGD 370
emb|CAB41986.1| (AJ236906) 64 kDa mitochondrial NADH dehydrogenase [Neurospora
crassa]
Length = 673
Score = 82.7 bits (201), Expect = 9e-15
Identities = 64/222 (28%), Positives = 105/222 (46%), Gaps = 11/222 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEV-DDEKRRAL 158
YD +++A+G N GV G++ F L + DA +I+ + + ++ + DE+R+ L
Sbjct: 249 YDKLVIAVGSTTNPHGVKGLENCHF-LKDINDARQIRNKIIQNLELSCLPTTSDEERKRL 307
Query: 159 LTISVAGSGFTGIEMAGELIDWRKKVSTDW--KIPEEEITINVVEMMPTILNTLDRKQAD 216
L+ V G G TG+E A EL D + T ++ EI++++++ ILNT D +
Sbjct: 308 LSFVVCGGGPTGVEFAAELFDLLNEDLTLHFPRLLRNEISVHLIQSRDHILNTYDEAVSK 367
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRD-EEKVAKELPTHTLIWTTGVQGNTA 275
A + V VL N + EV + I G D + V KE P +W+TGV
Sbjct: 368 YAEDRFSRDQVDVLVNSRVAEVRPESILFTQRGPDGKTTVTKECPMGFCLWSTGVSQAEF 427
Query: 276 AKTDLN-----ETERGHRLQANEYMQAVGFEGKGIYVAGDVS 312
K +T R H L+ + +++ G +Y GD S
Sbjct: 428 CKRISRQLGPAQTNR-HALETDTHLRLNGTPLGDVYAIGDCS 468
emb|CAA17043.1| (AL021837) hypothetical protein [Schizosaccharomyces pombe]
Length = 551
Score = 78.4 bits (190), Expect = 2e-13
Identities = 48/185 (25%), Positives = 90/185 (47%), Gaps = 9/185 (4%)
Query: 100 YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYA--STEVDDEKRRA 157
YD ++ A+G FG+ GV++HG L DA ++ + +I++ + ++ E+R
Sbjct: 194 YDTLVFAIGAGNQTFGIQGVRDHGCFLKEAGDAKKVFNRIFEILEQVRFNKDLSPEERAR 253
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWK--IPE--EEITINVVEMMPTILNTLDRK 213
LL I+V G G TG+E A E+ D+ + D K PE ++I + ++E P +L +
Sbjct: 254 LLHITVVGGGPTGMEFAAEMQDF---IDNDVKDMFPELQKDIHVTLIEAAPGVLPMFTKS 310
Query: 214 QADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGN 273
+ N+ ++T + +V + ++ V D K +E+P L+W G+
Sbjct: 311 LITYTENLFKNLNIKIMTKTVVKDVNEKNLIVQKTNPDGSKAMQEIPYGMLVWAAGITAR 370
Query: 274 TAAKT 278
+T
Sbjct: 371 PLTRT 375
emb|CAB52796.1| (AJ245861) putative internal rotenone-insensitive NADH
dehydrogenase [Solanum tuberosum]
Length = 495
Score = 76.9 bits (186), Expect = 5e-13
Identities = 77/291 (26%), Positives = 134/291 (45%), Gaps = 21/291 (7%)
Query: 99 SYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTE-VDDEKRRA 157
SYD +++A G FG+ GV EH L + A I+R L + + V +E++R
Sbjct: 167 SYDKLVIASGAHALTFGIKGVNEHATFLREVHHAQEIRRKLLLNLMLSDVPGVSEEEKRR 226
Query: 158 LLTISVAGSGFTGIEMAGELIDW-RKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQAD 216
LL V G G TG+E +GEL D+ K V + ++ I + ++E IL++ D +
Sbjct: 227 LLHCVVVGGGPTGVEFSGELSDFILKDVHQRYAHVKDYIHVTLIE-ANEILSSFDDRLRV 285
Query: 217 KAHAYLEKKNVHVLTNHGIVE-VAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTA 275
A L K V ++ G+V+ V D+I ++ G +P L+W+TGV G +
Sbjct: 286 YATNQLTKSGVRLV--RGLVQHVQPDNIILSDG--------TNVPYGLLVWSTGV-GPSP 334
Query: 276 AKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVXXXXXXXX 335
L+ + R+ +E+++ + +Y GD SG++E TGR +
Sbjct: 335 FVNSLDIPKAKGRIGIDEWLRVPSVQ--DVYSIGDCSGFLE-STGRQVLPALAQVAERQG 391
Query: 336 XXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSMRLTGFWAMLM 386
++L + G H + Q +++G + +GSM G + L+
Sbjct: 392 KYLASLLNKV-GKQGGGHANCAQN--INLGDPFVYKHLGSMATIGRYKALV 439
emb|CAA18713.1| (AL022603) NADH dehydrogenase like protein [Arabidopsis thaliana]
Length = 478
Score = 76.1 bits (184), Expect = 9e-13
Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 16/233 (6%)
Query: 88 NKQVITKHGR----YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIV 143
+KQ + G+ YDY+++A G + N F +PGV+E+ L +EDA RI+ +
Sbjct: 133 SKQGVNSKGKKEFDVDYDYLVIATGAQSNTFNIPGVEENCHFLKEVEDAQRIRSTVIDSF 192
Query: 144 QYASTE-VDDEKRRALLTISVAGSGFTGIEMAGELIDW-RKKVSTDWKIPEEEITINVVE 201
+ AS +++++R+ +L V G G TG+E A EL D+ + + + + + I ++E
Sbjct: 193 EKASLPGLNEQERKRMLHFVVVGGGPTGVEFASELHDFVNEDLVKLYPKAKNLVQITLLE 252
Query: 202 MMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPT 261
IL D++ + A + + V +V+V I + +P
Sbjct: 253 AADHILTMFDKRITEFAEEKFTRDGIDVKLGSMVVKVNDKEISAKTKAGE----VSTIPY 308
Query: 262 HTLIWTTGVQGNTAAKTDLNE----TERGHRLQANEYMQAVGFEGKGIYVAGD 310
++W+TG+ K + + + + L +E+++ G + IY GD
Sbjct: 309 GMIVWSTGIGTRPVIKDFMKQIGQVSSQRRALATDEWLRVEGCD--NIYALGD 359
dbj|BAA17783| (D90909) NADH dehydrogenase [Synechocystis sp.]
Length = 404
Score = 74.1 bits (179), Expect = 3e-12
Identities = 84/377 (22%), Positives = 157/377 (41%), Gaps = 35/377 (9%)
Query: 21 ELSKKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXX 80
+LS + +I L+D+ L+E+ + + F +LL +
Sbjct: 26 QLSWEGHTPPEIVLVDQRDRFLFAPFLYELVTEEMQTWEIAPPFVELLAESGVIFRQAEV 85
Query: 81 XXXXXKENKQVITKHGR----YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIK 136
K ++ + ++D +++ALGG+ +PG+K++G +LEDA ++K
Sbjct: 86 TAIDFDHQKVLLNDQDKGTESLAFDQLVIALGGQTPLPNLPGLKDYGLGFRTLEDAYKLK 145
Query: 137 RHLEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEIT 196
+ L+ + Q D EK R I++ G G++G+E+A +L D E
Sbjct: 146 QKLKSLEQ-----ADAEKIR----IAIVGGGYSGVELAAKLGDRL----------GERGR 186
Query: 197 INVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVA 256
I ++E IL +A A L K + V T + + + + R++E V
Sbjct: 187 IRIIERGKEILAMSPEFNRQQAQASLSAKGIWVDTETTVTAITATDVTLQF--REQEDV- 243
Query: 257 KELPTHTLIWTTGVQGNTAAKT-DLNETERGHRLQANEYMQAVGFEGK-GIYVAGDVSGY 314
+P ++WT G + + L ++G +L+ N +Q EGK I+ GD
Sbjct: 244 --IPVDLVLWTVGTTVSPLIRNLALPHNDQG-QLRTNAQLQV---EGKTNIFALGD-GAE 296
Query: 315 IEPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIG 374
+G+ P NI A++ G + G M+++G+ V
Sbjct: 297 GRDASGQLIPTTAQGAFQQTDYCAWNIWANLTGRPLLPCRYQPLGEMLALGTDGAVLSGL 356
Query: 375 SMRLTGFWAMLMKNIVY 391
++L+G A+L + +VY
Sbjct: 357 GIKLSGPAALLARRLVY 373
sp|P44856|DHNA_HAEIN NADH DEHYDROGENASE >gi|1075062|pir||C64090 NADH dehydrogenase (ndh)
homolog - Haemophilus influenzae (strain Rd KW20)
>gi|1573754 (U32758) NADH dehydrogenase (ndh)
[Haemophilus influenzae Rd]
Length = 444
Score = 74.1 bits (179), Expect = 3e-12
Identities = 79/363 (21%), Positives = 146/363 (39%), Gaps = 38/363 (10%)
Query: 30 ADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXXXXKENK 89
A +TL+D+++ H LHE+A G + + + GK +E K
Sbjct: 30 AKVTLVDRNATHLWKPLLHEIATGVMDDGVDSLSY-RAHGKNHFFSFEQGSIIRINREQK 88
Query: 90 QV------------ITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIK- 136
V + R YDY+++A+G + NDF GV ++ L S + A+R +
Sbjct: 89 YVELAPVYGQEGDMLVIARRIPYDYLVIAIGSKSNDFNTKGVADNCIFLDSSKQALRFQH 148
Query: 137 RHLEKIVQYASTEV-----DDEKRRAL-----LTISVAGSGFTGIEMAGELIDWRKKVST 186
+ LE ++++ ++E ++ L + I++ G G TG+E+ EL + +S+
Sbjct: 149 KLLELFLKFSENRALDDIGEEEFKQKLVDENKVNIAIVGGGATGVELTAELYHAAEDLSS 208
Query: 187 --DWKIPEEEITINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK 244
KI + + +VE +L L + L++ +V N I E + +
Sbjct: 209 YGYGKIDSSCLQVTLVEAGTRLLPALPENLSAAVLDELKEMGTNVQLNTMITEAQPNTLI 268
Query: 245 VNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAKT-DLNETERGHRLQANEYMQAVGFEGK 303
GG E+ ++W GV+ +T + D E R ++L + +Q
Sbjct: 269 TKDGG--------EIKADLIVWAAGVRASTVTQQFDGLEINRINQLVVKDTLQTT--VDD 318
Query: 304 GIYVAGDVSGYIEPDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVS 363
I+ GD + I+ G+ P NI A + +GT+VS
Sbjct: 319 SIFAIGDCAALIQ-SNGKLVPPRAQAAHQMAKACAKNIFALFENKPLKSFKYNDKGTLVS 377
Query: 364 IGS 366
+ +
Sbjct: 378 LSN 380
emb|CAB53125.1| (AL109962) putative oxidoreductase [Streptomyces coelicolor A3(2)]
Length = 409
Score = 71.4 bits (172), Expect = 2e-11
Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 35/272 (12%)
Query: 95 HGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEK 154
HG YD ++ ALG GVPGV EH F + A+R+++ L+ + +
Sbjct: 98 HGELGYDTLLYALGSHVTTHGVPGVAEHAFDVAGRPSALRLRKRLDVL----------SR 147
Query: 155 RRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQ 214
R ++ + G G TGIE A E+ + R P +T+ + L+ R+
Sbjct: 148 RDEGGSVLIVGVGLTGIETATEIAESR---------PGLSVTLIARGELGAQLSAGARRH 198
Query: 215 ADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTG-VQGN 273
+A ++ + VL + + V + G L + +WT G
Sbjct: 199 LRQA---CDRLGITVLEHTEVEAVEAARVLCADG--------TALASDATVWTAGFAVSP 247
Query: 274 TAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVXXXXXX 333
AA L TE G R+ + MQ+V +Y AGD S Y+ D GRP P
Sbjct: 248 IAAAGGLEVTETG-RIVVDRTMQSVSH--PNVYAAGD-SAYVVGDNGRPLPMSCASAGYT 303
Query: 334 XXXXXXNILADINGGSKHKHESKYQGTMVSIG 365
I+ + G + + +Y G +S+G
Sbjct: 304 GMQATAAIVGRLTGRTIPNTKLEYLGNHISLG 335
emb|CAB15210| (Z99120) similar to NADH dehydrogenase [Bacillus subtilis]
Length = 330
Score = 69.5 bits (167), Expect = 9e-11
Identities = 61/289 (21%), Positives = 121/289 (41%), Gaps = 46/289 (15%)
Query: 20 RELSKKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXX 79
R L +L D ITLID++ YH T+ + +AAG + ++ F +
Sbjct: 19 RLLPNQLPDDVSITLIDRNPYHCLKTEYYALAAGTISDHHIRVSFP----EHPRLDVQYG 74
Query: 80 XXXXXXKENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRH 138
KQV+ + SYD I+ LG E VPG E +++ +++ + +
Sbjct: 75 DITSIDIVQKQVLFQDREPISYDDAIIGLGCEDKYHNVPGAPEFTYSIQTIDQSRETYQK 134
Query: 139 LEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITIN 198
L + A T+++ G+G +G+E+A EL + R +++ I
Sbjct: 135 LNNL-------------SANATVAIVGAGLSGVELASELRESR-----------DDLNII 170
Query: 199 VVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKE 258
+ + IL++ + + + E+ V ++ I +V + V ++ ++ +
Sbjct: 171 LFDRGNLILSSFPERLSKYVQKWFEEHGVRIINRANITKVEE-----GVVYNHDDPISAD 225
Query: 259 LPTHTLIWTTGVQGNTAAK-TDLNETERG-------HRLQANEYMQAVG 299
++WT G+Q N + D+ + +G H L +E++ VG
Sbjct: 226 ----AIVWTAGIQPNKVVRDLDVEKDAQGRIVLTPHHNLPGDEHLYVVG 270
dbj|BAA30617| (AP000006) 440aa long hypothetical NADH oxidase [Pyrococcus
horikoshii]
Length = 440
Score = 66.0 bits (158), Expect = 1e-09
Identities = 70/242 (28%), Positives = 104/242 (42%), Gaps = 43/242 (17%)
Query: 86 KENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKIVQ 144
+E K +IT G YD +++A G + GV+ G FTL SL+D RIK ++ K
Sbjct: 84 RERKVIITDKGEVPYDKLVLATGSRAFIPPIKGVENEGVFTLKSLDDVRRIKEYISK--- 140
Query: 145 YASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMP 204
R + V G+G G+E A K+ D + VVE++
Sbjct: 141 -----------RKPKKVVVIGAGLIGLEGAEAF----AKIGMD---------VLVVELLE 176
Query: 205 TILNT-LDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK-VNVGGRDEEKVAKELPTH 262
+L T LD+ A +EK V G+ E+ + +K V +G EE V +L
Sbjct: 177 HLLPTMLDKDMAKIVQEEMEKHGVKFKFGVGVSEIIGNPVKEVKIG---EESVEADL--- 230
Query: 263 TLIWTTGVQGNTAAKTDLN-ETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGR 321
++ TGV+ N D E RG + NEY+Q IY GD + + TG+
Sbjct: 231 -VLVATGVRANVDLAKDAGLEVSRG--IVVNEYLQT---SDPDIYAIGDCAEVFDAVTGK 284
Query: 322 PT 323
T
Sbjct: 285 RT 286
gb|AAD35480.1|AE001719_6 (AE001719) NADH oxidase, putative [Thermotoga maritima]
Length = 425
Score = 65.2 bits (156), Expect = 2e-09
Identities = 65/235 (27%), Positives = 109/235 (45%), Gaps = 41/235 (17%)
Query: 87 ENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGV--KEHGFTLWSLEDAMRIKRHLEKIV 143
E K V+T G YD +++A GG+P + G+ K+ FT + ED ++++++E+
Sbjct: 84 EEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTGKKGVFTFTTWEDEEKVEKYIEE-- 141
Query: 144 QYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMM 203
+D K +L G G G++ L++ KV+ +VE+
Sbjct: 142 -------NDVKEAVVL-----GGGLIGLKTTEALMELGVKVT-------------IVELA 176
Query: 204 PTILN-TLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTH 262
IL+ T DRK ++ L+K+ V+TN +V+V D +V K KE+PT
Sbjct: 177 DRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSV----VLKSGKEIPTK 232
Query: 263 TLIWTTGVQGNTAAKTDLN-ETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIE 316
L+ GV+ N D E RG + NE M+ +G+Y AGD + + +
Sbjct: 233 LLVIAIGVKPNVEFLKDSGIEINRG--IVVNEKMET---NVEGVYAAGDCTEFYD 282
gb|AAD35465.1|AE001718_2 (AE001718) NADH oxidase [Thermotoga maritima]
Length = 443
Score = 64.0 bits (153), Expect = 4e-09
Identities = 66/246 (26%), Positives = 111/246 (44%), Gaps = 49/246 (19%)
Query: 87 ENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKIVQ 144
+ K++ TK G+ SYD +I+A G PN +PGV G FT+ D +++
Sbjct: 84 DEKKLFTKSGKEISYDKLIIATGSSPNIPKIPGVDLKGVFTVPKEADYLKLLH------- 136
Query: 145 YASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMP 204
EK + + + G GF G+E+A E+ K V+ +VE+M
Sbjct: 137 --------EKVKDANDVVIIGGGFIGVEVADEIKKSGKNVT-------------LVEIMD 175
Query: 205 TILN-TLDRKQADKAHAYLEKKNVHVLTNHGIVEV----AKDHIKVNVGGRDEEKVAKEL 259
++L + D + A LE NV VLT + E+ + +K++ G + +
Sbjct: 176 SLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSG--------ETI 227
Query: 260 PTHTLIWTTGVQGNT--AAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEP 317
P ++ TG + N+ A K L TE G ++ +EYM+ I+ AGD + +
Sbjct: 228 PADVVVLATGYKPNSELARKLGLKVTELGF-IETDEYMRT---SKPDIFAAGDCVQHKDF 283
Query: 318 DTGRPT 323
TG+P+
Sbjct: 284 LTGKPS 289
emb|CAB49573.1| (AJ248285) NADH oxidase (noxA-2) [Pyrococcus abyssi]
Length = 440
Score = 61.3 bits (146), Expect = 3e-08
Identities = 67/242 (27%), Positives = 109/242 (44%), Gaps = 43/242 (17%)
Query: 86 KENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKIVQ 144
+E K VIT G YD +++A G + + GV+ G FTL SL+D RIK ++ K
Sbjct: 84 RERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGK--- 140
Query: 145 YASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVE-MM 203
++A+ V G+G G+E A K+ E + + ++E ++
Sbjct: 141 -------RNPKKAV----VIGAGLIGLEGAEAFA----------KLGMEVLVVELLEHLL 179
Query: 204 PTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK-VNVGGRDEEKVAKELPTH 262
PT+ LD+ A +E+ V G+ E+ + ++ V +G +E V +L
Sbjct: 180 PTM---LDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIG---DETVEADL--- 230
Query: 263 TLIWTTGVQGNTAAKTDLN-ETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGR 321
++ TGV+ N D E RG + NEY+Q IY GD + I+ TG+
Sbjct: 231 -VLVATGVRANVDLAKDAGLEVNRG--IVVNEYLQT---SDPDIYAIGDCAEVIDAVTGK 284
Query: 322 PT 323
T
Sbjct: 285 RT 286
gb|AAD35836.1|AE001745_3 (AE001745) oxidoreductase [Thermotoga maritima]
Length = 358
Score = 60.9 bits (145), Expect = 3e-08
Identities = 59/252 (23%), Positives = 104/252 (40%), Gaps = 43/252 (17%)
Query: 21 ELSKKLKADADITLIDKHS--YHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXX 78
EL+K+L + ++T++++ + Y+T H VA + Y K+
Sbjct: 14 ELAKQLSEEHEVTIVERETVPYYTKPMLSHYVAGLAEEKSLFPYPID-WYEKKGIKLLLG 72
Query: 79 XXXXXXXKENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRH 138
E K + T G YD +++A G +P +PG E +TL ++EDA R+K
Sbjct: 73 TTAKRIDAEKKVLETDRGTLEYDVLVLATGAKPRTLKIPG-WERMYTLRTIEDAKRLKGA 131
Query: 139 LEKIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITIN 198
+E+ EK + + G GF G+E+AG L ++ I +
Sbjct: 132 VER-----------EK-----DLLIIGGGFIGLEIAGNL-------------SKQGIKVK 162
Query: 199 VVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKE 258
VVE M T L LD + ++ LEK V + + D + + +E
Sbjct: 163 VVEKM-TRLMGLDEELTERIKGELEKHGVEFYLGRDVERIENDVLVTD---------KEE 212
Query: 259 LPTHTLIWTTGV 270
+P ++ + G+
Sbjct: 213 IPARVILCSIGI 224
emb|CAB09500| (Z96073) hypothetical protein Rv1812c [Mycobacterium tuberculosis]
Length = 400
Score = 60.1 bits (143), Expect = 6e-08
Identities = 64/292 (21%), Positives = 120/292 (40%), Gaps = 34/292 (11%)
Query: 26 LKADADITLIDKHSYHTTMTQLHE--VAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXX 83
L D+ ++ +H + +E ++A R+P V LG
Sbjct: 30 LAGTVDVMVVSNKPFHDIRVRNYEADLSACRIPLGDV-------LGPA-GVAHVTAEVTA 81
Query: 84 XXKENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKI 142
+ ++V T G YSYD +++A G +PG+ E GF + + + A+R+++HL+ +
Sbjct: 82 IDADGRRVTTSTGASYSYDRLVLASGSHVVKPALPGLAEFGFDVDTYDGAVRLQQHLQGL 141
Query: 143 VQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVST--DWKIPEEEITINVV 200
T A T+ V G+G TGIE A EL + D P + ++
Sbjct: 142 AGGPLTS-------AAATVVVVGAGLTGIETACELPGRLHALFARGDGVTPR----VVLI 190
Query: 201 EMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELP 260
+ P + + + L V T + V+ + ++ G R L
Sbjct: 191 DHNPFVGSDMGLSARPVIEQALLDNGVETRTGVSVAAVSPGGVTLSSGER--------LA 242
Query: 261 THTLIWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVS 312
T++W G++ + + +R RLQ ++Y++ +G ++ AGDV+
Sbjct: 243 AATVVWCAGMRASRLTEQLPVARDRLGRLQVDDYLRVIGV--PAMFAAGDVA 292
gi|2650233 (AE001077) NADH oxidase (noxA-3) [Archaeoglobus fulgidus]
Length = 551
Score = 58.2 bits (138), Expect = 2e-07
Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 40/216 (18%)
Query: 99 SYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRA 157
+YDY+++A G P + G++ G TL S E+A EKI++ E EK
Sbjct: 108 NYDYLVIATGARPAKPPIEGIEAEGVVTLTSAEEA-------EKIIE--MWEEGAEK--- 155
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNT-LDRKQAD 216
V G+GF G+E A L ++ + V+EMM + LDR+ A
Sbjct: 156 ---AVVIGAGFIGLESAEAL-------------KNLDMEVTVIEMMDRVAPAMLDREMAV 199
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNT-- 274
+L +K V+V+T+ + ++ KV R KE P ++ TG++ N+
Sbjct: 200 LVENHLREKGVNVVTSTRVEKIVSQDDKV----RAVIANGKEYPADVVVVATGIKPNSEL 255
Query: 275 AAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGD 310
A K L E G + +EYM+ + IY GD
Sbjct: 256 AEKAGLKIGETG-AIWVDEYMRT---SDESIYAGGD 287
sp|Q10499|YDGE_SCHPO PUTATIVE FLAVOPROTEIN C26F1.14C
Length = 575
Score = 53.5 bits (126), Expect = 6e-06
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 30/215 (13%)
Query: 99 SYDYVIVALGGEPNDFGVPGV-KEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRA 157
SY +I+A GGEPN +PG+ ++ + L S+ DA ++ +TE D+K
Sbjct: 254 SYTKLILATGGEPNKLPIPGLDSKNVYLLRSIADASKLAA--------VTTEAGDKK--- 302
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADK 217
I + GS F G+E+A L D V IP E++ + + + T L L +
Sbjct: 303 --NIVIIGSSFIGLELAVVLKDHNVSVIGMESIPFEKV---MGKEVGTALKALHEQNG-- 355
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAK 277
YLE V T+ A +HI + G + +P +I GV+ N
Sbjct: 356 IAFYLENSIKEVKTSSNDSSKA-EHIVLKDG--------QSIPADVVILAAGVKPNLRYL 406
Query: 278 TDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVS 312
+ E+ ++ +E+ + +G E +Y GD++
Sbjct: 407 GNAVSLEKDGGVKVDEHCRVLGAE--DVYAVGDIA 439
sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|2129157|pir||A64381 NADH oxidase
- Methanococcus jannaschii >gi|1591361 (U67512) NADH
oxidase (nox) [Methanococcus jannaschii]
Length = 463
Score = 53.5 bits (126), Expect = 6e-06
Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 55/328 (16%)
Query: 86 KENK-QVITKHGR---YSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLE 140
K NK + + K G +YDY+++A G EP + G G F + ++ED I +++E
Sbjct: 101 KNNKIKCVDKDGNEFEMNYDYLVLATGAEPFIPPIEGKDLDGVFKVRTIEDGRAILKYIE 160
Query: 141 KIVQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVV 200
+ ++V G+G G+EMA + + + + VV
Sbjct: 161 E--------------NGCKKVAVVGAGAIGLEMA-------------YGLKCRGLDVLVV 193
Query: 201 EMMPTIL-NTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKV---A 256
EM P +L LD A+ YLEK+ + V+ + + ++ VG E V
Sbjct: 194 EMAPQVLPRFLDPDMAEIVQKYLEKEGIKVMLSKPLEKI--------VGKEKVEAVYVDG 245
Query: 257 KELPTHTLIWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIE 316
K +I TGV+ N ++ NE MQ IY GD I+
Sbjct: 246 KLYDVDMVIMATGVRPNIELAKKAGCKIGKFAIEVNEKMQT---SIPNIYAVGDCVEVID 302
Query: 317 PDTGRPTPQIVXXXXXXXXXXXXNILADINGGSKHKHESKYQGTMVSIGSTWGVAKIGSM 376
TG T +A + E+K+ + S S G +IG
Sbjct: 303 FITGEKTLSPFGTAAVRQGKVAGKNIAGV--------EAKFYPVLNSAVSKIGDLEIGGT 354
Query: 377 RLTGFWAMLMKNIVYFIYTLQIRSAHYF 404
LT F A L + + + A Y+
Sbjct: 355 GLTAFSANLKRIPIVIGRAKALTRARYY 382
emb|CAA97371.1| (Z73100) putative flavoprotein [Schizosaccharomyces pombe]
Length = 354
Score = 53.5 bits (126), Expect = 6e-06
Identities = 56/215 (26%), Positives = 95/215 (44%), Gaps = 30/215 (13%)
Query: 99 SYDYVIVALGGEPNDFGVPGV-KEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRA 157
SY +I+A GGEPN +PG+ ++ + L S+ DA ++ +TE D+K
Sbjct: 33 SYTKLILATGGEPNKLPIPGLDSKNVYLLRSIADASKLAA--------VTTEAGDKK--- 81
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADK 217
I + GS F G+E+A L D V IP E++ + + + T L L +
Sbjct: 82 --NIVIIGSSFIGLELAVVLKDHNVSVIGMESIPFEKV---MGKEVGTALKALHEQNG-- 134
Query: 218 AHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNTAAK 277
YLE V T+ A +HI + G + +P +I GV+ N
Sbjct: 135 IAFYLENSIKEVKTSSNDSSKA-EHIVLKDG--------QSIPADVVILAAGVKPNLRYL 185
Query: 278 TDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVS 312
+ E+ ++ +E+ + +G E +Y GD++
Sbjct: 186 GNAVSLEKDGGVKVDEHCRVLGAE--DVYAVGDIA 218
dbj|BAA79565.1| (AP000060) 386aa long hypothetical protein [Aeropyrum pernix]
Length = 386
Score = 50.0 bits (117), Expect = 6e-05
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 86 KENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLE 140
+ENK ++ YDY+++ALG P++ +PG++E W+LE A++++R LE
Sbjct: 89 EENKVELSSGSAIEYDYLVIALGAVPDEKALPGLEEANANPWTLEGALKVRRALE 143
emb|CAA15231| (AJ235273) DIHYDROLIPOAMIDE DEHYDROGENASE (pdhD) [Rickettsia
prowazekii]
Length = 459
Score = 47.6 bits (111), Expect = 3e-04
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 62/280 (22%)
Query: 103 VIVALGGEPNDFG--VPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRALLT 160
+I+A G P P +K+ +W+ ++AM I +H+ K +
Sbjct: 134 IIIATGTRPKILQGFEPDIKQ----IWTSKEAM-IPQHVPK------------------S 170
Query: 161 ISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADKAHA 220
+ + GSG GIE A + + D + V+E IL + D + A AH
Sbjct: 171 MIIIGSGAIGIEFAS----FYNSIGVD---------VTVIEAKNRILPSEDTEIAGIAHK 217
Query: 221 YLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQGNT----AA 276
E+K + ++TN +++ K ++ V E K K L L+ G+ N
Sbjct: 218 NFEQKGIKIITNAKLIKQTKSQNEIEVELELEGKTQK-LQATILLMAVGISANIENLGLE 276
Query: 277 KTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGRPTPQIVXXXXXXXXX 336
KT + E E G+ L N MQ GIY GDV+G P +
Sbjct: 277 KTKV-EVENGYIL-TNGLMQTA---ESGIYAIGDVAG---------VPCLAHKASHEGII 322
Query: 337 XXXNILADINGGSKHKHESKY----QGTMVSIGSTWGVAK 372
+I A +N +KH Y + S+G T +AK
Sbjct: 323 AAESI-AGLNPNGINKHNIPYCIYSSPQIASVGLTEEIAK 361
sp|P75389|NAOX_MYCPN PROBABLE NADH OXIDASE (NOXASE) >gi|2146473|pir||S73770 NADH oxidase
nox - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674132 (AE000044) Mycoplasma pneumoniae, NADH
oxidase; similar to Swiss-Prot Accession Number P37061,
from E. faecalis [Mycoplasma pneumoniae]
Length = 479
Score = 46.9 bits (109), Expect = 6e-04
Identities = 54/235 (22%), Positives = 104/235 (43%), Gaps = 28/235 (11%)
Query: 87 ENKQVITKH---GRYS---YDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAM--RIKRH 138
+ KQVI K G+ + YD ++VA G P V H ++ D IK
Sbjct: 86 DKKQVIVKDLATGKETVDHYDQLVVASGAWPICMNVENEVTHTQLQFNHTDKYCGNIKNL 145
Query: 139 LE-KIVQYASTEVDDEKR-RALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEIT 196
+ K+ Q+A T +D + +++ ++++ GSG+ G+E+A W+ ++
Sbjct: 146 ISCKLYQHALTLIDSFRHDKSIKSVAIVGSGYIGLELA----------EAAWQCGKQVTV 195
Query: 197 INVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVA 256
I++++ N D + ++ ++K ++++ + D K V G + +K
Sbjct: 196 IDMLDKPAG--NNFDEEFTNELEKAMKKAGINLMMGSAVKGFIVDADKNVVKGVETDK-- 251
Query: 257 KELPTHTLIWTTGVQGNT--AAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAG 309
+ +I + G + NT K E R ++ NEY+QA+ E +YV G
Sbjct: 252 GRVDADLVIQSIGFRPNTQFVPKDRQFEFNRNGSIKVNEYLQALNHE--NVYVIG 304
gi|2982940 (AE000679) sulfide dehydrogenase, flavoprotein subunit [Aquifex
aeolicus]
Length = 417
Score = 46.1 bits (107), Expect = 0.001
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 19 TRELSKKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXX 78
T + KKL DA++ L++K+ + + G VP+ + Y + L+ K
Sbjct: 50 TAKYVKKLYPDAEVVLVEKNPMFVSCPLSNLYLVGLVPYEQLCYPYNNLVTKY-GVNFVN 108
Query: 79 XXXXXXXKENKQVITKHGRYSYDYVIVALGGEPNDFGVPGVKEHGFTLWSLEDAMR---- 134
+ ++VI +GR YDY++++LG E + P +KE WS A R
Sbjct: 109 DEVIGIELDKREVILGNGRLKYDYLVISLGIEYDYEENPALKE---VYWSYPPAFRQGSE 165
Query: 135 ---IKRHLE 140
+KR LE
Sbjct: 166 HLYLKRMLE 174
gi|2622461 (AE000898) NADH oxidase [Methanobacterium thermoautotrophicum]
Length = 450
Score = 45.7 bits (106), Expect = 0.001
Identities = 60/239 (25%), Positives = 92/239 (38%), Gaps = 44/239 (18%)
Query: 89 KQVITKHGR-----YSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKI 142
K+ +T G+ YD +++A GG P V G G FT+ +L D RI
Sbjct: 86 KKTVTYRGKDGLREIPYDVLVLATGGSPFIPPVEGTDLEGVFTIRTLTDGERI------- 138
Query: 143 VQYASTEVDDEKRRALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEM 202
TE + +RA+ V G+G G+E+A L+ + + V EM
Sbjct: 139 -----TEWASKSKRAV----VVGAGLIGLEIAYGLL-------------RMGLEVTVTEM 176
Query: 203 MPTIL-NTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPT 261
+P I+ +LD A YLE+K + V+ + + D V DE L
Sbjct: 177 LPQIVPRSLDPDMAAIVQGYLEEKGIRVILGKALDRIVGDERVEGVVVGDE-----CLEA 231
Query: 262 HTLIWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTG 320
++ TGV+ T ++ N+ MQ IY GD + TG
Sbjct: 232 DLVVLATGVRPETKLARMAGCEIGQWAVKVNDRMQT---SVPDIYAVGDCVEVYDAVTG 287
emb|CAB50317.1| (AJ248287) NADH oxidase (noxA-1) [Pyrococcus abyssi]
Length = 446
Score = 45.3 bits (105), Expect = 0.002
Identities = 61/231 (26%), Positives = 97/231 (41%), Gaps = 47/231 (20%)
Query: 98 YSYDYVIVALGGEPNDFGVPGVKEHG-FTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRR 156
Y +DY++ A G P + GV G FT DA+ I+ ++EK V+D
Sbjct: 105 YEWDYLVFANGASPQVPAIEGVDLKGVFTADLPPDAVAIREYMEK------NRVED---- 154
Query: 157 ALLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQAD 216
+ + G G+ G+EMA + K+V+ +V + + D++ D
Sbjct: 155 ----VVIVGGGYIGLEMAEAFVAQGKRVTM------------IVRGERILRRSFDKEVTD 198
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDE-EKV---AKELPTHTLIWTTGVQG 272
+E+K L H V + I + + G+D EKV A E +I TG++
Sbjct: 199 ----IIEEK----LKQH--VNLRLQEIVLRIEGKDRVEKVVTDAGEYRADLVILATGIKP 248
Query: 273 N--TAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYIEPDTGR 321
N A + + E G + NE MQ + +Y AGDV+ TGR
Sbjct: 249 NIELARQLGVRIGETG-AIWTNEKMQT---SVENVYAAGDVAETKHVITGR 295
pir||I40794 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Clostridium magnum
>gi|472330 (L31844) dihydrolipoamide dehydrogenase
[Clostridium magnum]
Length = 578
Score = 45.3 bits (105), Expect = 0.002
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 160 TISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADKAH 219
+I++ G G G+E A KVS ++EM+P IL +DR+ ++ A
Sbjct: 287 SIAIIGGGVIGVEFASIFNSLGCKVS-------------IIEMLPHILPPMDREISEIAK 333
Query: 220 AYLEKKNVHVLTNHGI--VEVAKDHIKVN-VGGRDEEKVAKELPTHTLIWTTGVQGNTAA 276
A L + +++ N + +E +D +KV+ +G + EE + E + + ++G
Sbjct: 334 AKLIRDGININNNCKVTRIEQGEDGLKVSFIGDKGEESIDVEKVLIAVGRRSNIEGLDVE 393
Query: 277 KTDLNETERGHRLQANEYMQAVGFEGKGIYVAGDVSGYI 315
K + +TE G + N+ M+ +GIY GD +G I
Sbjct: 394 KIGV-KTE-GGSIIVNDKMET---NVEGIYAIGDCTGKI 427
gi|2688656 (AE001172) NADH oxidase, water-forming (nox) [Borrelia burgdorferi]
Length = 444
Score = 44.1 bits (102), Expect = 0.004
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 43/217 (19%)
Query: 99 SYDYVIVALGGEPNDFGVPGVKEHGF-TLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRA 157
+YD +++A G +P + + F TL +LED +IK+ ++ R
Sbjct: 104 TYDQLMIATGAKPIIPPINNINLENFHTLKNLEDGQKIKKLMD--------------REE 149
Query: 158 LLTISVAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTIL-NTLDRKQAD 216
+ I + G G+ GIEM + RK V ++++ IL ++ D +
Sbjct: 150 IKNIVIIGGGYIGIEMVEAAKNKRKNV-------------RLIQLDKHILIDSFDEEIVT 196
Query: 217 KAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTH---TLIWTTGVQGN 273
L KK V++ TN + +K +G + E V T+ +I TG++ +
Sbjct: 197 IMEEELTKKGVNLHTN--------EFVKSLIGEKKAEGVVTNKNTYQADAVILATGIKPD 248
Query: 274 TAAKTDLNETERGHRLQANEYMQAVGFEGKGIYVAGD 310
T + +T + + NEY + K I+ AGD
Sbjct: 249 TEFLENQLKTTKNGAIIVNEYGET---SIKNIFSAGD 282
sp|O50311|DLDH_CHLVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|2661853|emb|CAB06298| (Z83933) dehydrolipoamide
dehydrogenase [Chlorobium vibrioforme]
Length = 469
Score = 44.1 bits (102), Expect = 0.004
Identities = 49/214 (22%), Positives = 83/214 (37%), Gaps = 41/214 (19%)
Query: 103 VIVALGGEPNDFGVPGVKEHGFTLWSLEDAMRIKRHLEKIVQYASTEVDDEKRRALLTIS 162
+IVA G +P +PG++ G + + +A+ +K E ++
Sbjct: 145 IIVATGAQPRV--IPGLEPDGKKIITSREALILKDVPESMI------------------- 183
Query: 163 VAGSGFTGIEMAGELIDWRKKVSTDWKIPEEEITINVVEMMPTILNTLDRKQADKAHAYL 222
V G G G+EMA W + + +VE+MP +L + + ++
Sbjct: 184 VVGGGAIGVEMA-------------WFYAKAGAKVTIVELMPRLLPAEEAEVSEALKRSF 230
Query: 223 EKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEKVAKELPTHTLIWTTGVQG---NTAAKTD 279
EK ++ V + VA VN E K +++ ++ GV G
Sbjct: 231 EKVDITVQCGAKLGNVAISEFGVNADLLAEGKEPQKIEASCMLVAVGVTGVIDGLGLDAA 290
Query: 280 LNETERGHRLQANEYMQAVGFEGKGIYVAGDVSG 313
ETERG ++ +E + GIY GDV G
Sbjct: 291 GIETERGF-IRTDELCRT---SASGIYAIGDVRG 320
dbj|BAA74793.1| (AB017192) nitrate reductase NADH oxydase subunit [Clostridium
perfringens]
Length = 407
Score = 43.4 bits (100), Expect = 0.006
Identities = 67/302 (22%), Positives = 116/302 (38%), Gaps = 54/302 (17%)
Query: 24 KKLKADADITLIDKHSYHTTMTQLHEVAAGRVPFTTVQYDFQKLLGKRKNXXXXXXXXXX 83
++L DA+I L+ K + LH +G + + + K
Sbjct: 20 RELDKDAEIILVSKDENVYSRCILHHYISGHRDIEALDFTDRDFFEKYNIEWKKGLEVKA 79
Query: 84 XXKENKQVITKHGR-YSYDYVIVALGGEPNDFGVPGVKE--HGFTLWSLEDAMRIKRHLE 140
++ +G YD +++A G V ++E + L +LEDA++IK E
Sbjct: 80 IDDREHVIVLSNGESLKYDKILLATGASAFIPPVENLREAKNVVGLRNLEDAIKIKEEAE 139
Query: 141 KIVQYASTEVDDEKRRALLTISVAGSGFTGIE-MAGELIDWRKKVSTDWKIPEEEITINV 199
K+ + V G+G GI+ +AG + +++ + +
Sbjct: 140 KV----------------KNVVVLGAGLVGIDAIAG--------------LAFKDLNVTL 169
Query: 200 VEMMPTILN-TLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIK------VNVGGRDE 252
VEM +L LD+ + K E V + +V D K +N G
Sbjct: 170 VEMGDRVLPIQLDKYASSKYEKRFEDAGVKLKLGVRAEKVLIDENKNPKALLINTG---- 225
Query: 253 EKVAKELPTHTLIWTTGVQGNTAAKTDLN-ETERGHRLQANEYMQAVGFEGKGIYVAGDV 311
+E+P +I TGV+ N A D + ET+R L NE + + +Y AGD+
Sbjct: 226 ----EEIPCELIIVATGVRSNVAFLKDSSIETDR-FGLIINEKGET---NARDVYGAGDI 277
Query: 312 SG 313
+G
Sbjct: 278 TG 279
sp|O05940|DLDH_RHIET PROBABLE DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE
AND 2-OXOGLUTARATE DEHYDROGENASES COMPLEXES) (ORF-E3)
>gi|2072735|emb|CAA72399| (Y11708) hypothetical protein
[Rhizobium etli]
Length = 277
Score = 43.0 bits (99), Expect = 0.008
Identities = 35/123 (28%), Positives = 57/123 (45%), Gaps = 9/123 (7%)
Query: 195 ITINVVEMMPTILNTLDRKQADKAHAYLEKKNVHVLTNHGIVEVAKDHIKVNVGGRDEEK 254
+ + VVE+MPTI+ D + A LEK+ + + T+ + +V K + +
Sbjct: 11 VDVTVVEVMPTIMPVEDAEITAIARKQLEKRGLKIFTSAKVTKVEKGAGSITAHVETSDG 70
Query: 255 VAKELPTHTLIWTTGVQGNTAAKTDLNETERGHRLQANEYMQAVGFEGK----GIYVAGD 310
+++ +I GVQGN +L G L ++ A G+ GK GIY GD
Sbjct: 71 KVQQITADRMISAVGVQGNI---ENLGLEALG-VLTDRRWLVADGY-GKTNVAGIYAIGD 125
Query: 311 VSG 313
V+G
Sbjct: 126 VAG 128
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170726906
Number of Sequences: 457798
Number of extensions: 6687243
Number of successful extensions: 13597
Number of sequences better than 1.0e-02: 53
Number of HSP's better than 0.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 13496
Number of HSP's gapped (non-prelim): 61
length of query: 667
length of database: 140,871,481
effective HSP length: 53
effective length of query: 614
effective length of database: 116,608,187
effective search space: 71597426818
effective search space used: 71597426818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 99 (43.0 bits)