Score E
Sequences producing significant alignments: (bits) Value
sp|P31672|NIFS_LACDE NIFS PROTEIN HOMOLOG >gi|98662|pir||S1... 365 e-100
gi|2293229 (AF008220) NifS2 [Bacillus subtilis] >gi|2635443... 287 1e-76
gb|AAD36759.1|AE001809_11 (AE001809) aminotransferase, clas... 285 4e-76
gi|4154727 (AE001459) putative AMINOTRANSFERASE [Helicobact... 249 2e-65
gb|AAD07288.1| (AE000542) synthesis of [Fe-S] cluster (nifS... 247 2e-64
sp|Q43884|NIFS_ANAAZ NIFS PROTEIN >gi|762778 (L34879) NifS ... 242 5e-63
sp|P12623|NIFS_ANASP NIFS PROTEIN >gi|97706|pir||C34443 nit... 238 4e-62
gi|1236927 (U49859) NifS2 [Anabaena variabilis] 230 2e-59
emb|CAA05909.1| (AJ003152) cysteine desulphurase [Ruminococ... 228 5e-59
emb|CAB14693| (Z99117) similar to NifS protein homolog [Bac... 227 1e-58
gi|2650451 (AE001093) nifS protein, class-V aminotransferas... 227 1e-58
emb|CAB72709.1| (AL139074) putative aminotransferase (nifS ... 226 3e-58
sp|P55690|NIFS_RHISN NIFS PROTEIN >gi|2182702 (AE000104) Ni... 224 1e-57
dbj|BAA10109| (D63999) NifS protein [Synechocystis sp.] 223 2e-57
sp|Q01179|NIFS_RHOSH NIFS PROTEIN >gi|282176|pir||C41880 ni... 223 2e-57
sp|P39171|NIFS_ECOLI NIFS PROTEIN HOMOLOG >gi|1799938|dbj|B... 222 3e-57
gi|1788879 (AE000339) putative aminotransferase [Escherichi... 222 3e-57
gi|2650055 (AE001065) nifS protein, class-V aminotransferas... 221 8e-57
emb|CAA07007| (AJ006406) AgSPL1 [Eremothecium gossypii] 213 2e-54
gb|AAC33372| (AF001780) NifS [Cyanothece PCC8801] 207 1e-52
sp|P87185|SPL1_CANAL TRNA SPLICING PROTEIN SPL1 >gi|2121284... 206 2e-52
pir||S02507 nifS protein - Klebsiella pneumoniae >gi|43831|... 206 3e-52
gi|142397 (M17349) nifS protein [Azotobacter vinelandii] 206 3e-52
gi|2827032 (AF008210) NifS [Buchnera aphidicola] 205 5e-52
sp|P05341|NIFS_AZOVI NIFS PROTEIN >gi|420859|pir||S29757 ni... 204 9e-52
sp|P87187|SPL1_CANMA TRNA SPLICING PROTEIN SPL1 >gi|2121288... 203 2e-51
sp|Q57337|NIFS_HAEIN NIFS PROTEIN HOMOLOG >gi|1075069|pir||... 203 3e-51
ref|NP_009912.1|NFS1| NifS-like protein; Nfs1p >gi|128151|s... 202 5e-51
sp|P05344|NIFS_KLEPN NIFS PROTEIN >gi|479600|pir||S34847 ni... 199 2e-50
emb|CAA16110.1| (AL021287) hypothetical protein Rv3025c [My... 199 3e-50
emb|CAA14939| (AJ235272) NIFS PROTEIN HOMOLOG (spl1) [Ricke... 198 5e-50
gi|2983322 (AE000705) FeS cluster formation protein NifS [A... 198 7e-50
gi|2271521 (AF010139) IscS [Azotobacter vinelandii] 198 7e-50
gi|2983536 (AE000720) FeS cluster formation protein NifS [A... 198 9e-50
emb|CAB16421| (Z99263) nifS-like protein [Mycobacterium lep... 197 1e-49
emb|CAA16686| (AL021684) pyridoxal-phosphate-dependent amin... 195 5e-49
ref|NP_035041.1|| nitrogen fixation gene, yeast homolog 1 (... 195 6e-49
pir||S37296 nifS protein - Klebsiella pneumoniae >gi|149344... 194 1e-48
gb|AAF09798.1|AE001883_4 (AE001883) aminotransferase, class... 193 2e-48
gi|4185794 (AF097025) cysteine desulfurase [Homo sapiens] 187 1e-46
emb|CAA20767.1| (AL031536) trna splicing protein [Schizosac... 187 1e-46
sp|Q52069|NIFS_ENTAG NIFS PROTEIN >gi|1480127|emb|CAA68020|... 184 1e-45
dbj|BAA16678| (D90899) NifS protein [Synechocystis sp.] 183 2e-45
emb|CAA14940| (AJ235272) NIFS PROTEIN HOMOLOG (spl1) [Ricke... 183 3e-45
gb|AAD17272| (AF119361) NifS [Frankia sp. EuIK1] 180 2e-44
emb|CAA20189| (AL031184) putative pyridoxal-phosphate-depen... 178 9e-44
sp|Q07177|NIFS_RHOCA NIFS PROTEIN >gi|486694|pir||S34816 ni... 178 9e-44
sp|P38033|NIFS_BACSU NIFS PROTEIN HOMOLOG >gi|421514|pir||B... 177 1e-43
sp|P23120|NIFS_AZOCH NIFS PROTEIN >gi|280008|pir||B43706 ni... 173 2e-42
gb|AAC16992.1| (AF067211) similar to aminotransferases clas... 167 2e-40
sp|P70727|NIFS_AZOBR NIFS PROTEIN >gi|1597739 (U26427) nifS... 161 7e-39
gi|3323174 (AE001256) nitrogen fixation protein (nifS-2) [T... 160 2e-38
gi|2121290 (AF000116) tRNA splicing protein [Candida maltosa] 160 2e-38
gb|AAC67851.1| (AE001298) NifS family of pyridoxal phosphat... 145 6e-34
emb|CAB39884.1| (AL049497) putative aminotransferase [Strep... 142 4e-33
gi|722379 (U23139) similar to NIFS protein (nitrogen fixati... 141 7e-33
emb|CAA09424| (AJ010952) putative tRNA splicing protein [Ho... 139 4e-32
gb|AAF12840.1|AF203881_13 (AF203881) NifS [Zymomonas mobilis] 132 6e-30
gb|AAD18539| (AE001623) NifS-related aminotransferase [Chla... 131 8e-30
gb|AAD36460.1|AE001791_22 (AE001791) aminotransferase, clas... 104 1e-21
gb|AAF30866.1|AE002141_12 (AE002141) nitrogen fixation prot... 99 6e-20
emb|CAB49156.1| (AJ248283) NIFS PROTEIN [Pyrococcus abyssi] 97 2e-19
gi|2622499 (AE000901) nifS protein [Methanobacterium thermo... 94 2e-18
emb|CAB15258| (Z99120) similar to NifS protein homolog [Bac... 94 2e-18
gb|AAD18828| (AE001651) NifS-related Aminotransferase [Chla... 92 9e-18
dbj|BAA15457| (D90811) NifS protein. [Escherichia coli] >gi... 91 1e-17
gi|2687967 (AE001121) aminotransferase (nifS) [Borrelia bur... 90 2e-17
emb|CAB11409| (Z98741) nifS-like protein [Mycobacterium lep... 88 1e-16
pir||I64114 nitrogen fixation protein (nifS) homolog - Haem... 87 2e-16
gi|3322912 (AE001236) nitrogen fixation protein (nifS-1) [T... 85 9e-16
gb|AAC68282.1| (AE001339) NifS-related enzyme [Chlamydia tr... 84 2e-15
emb|CAB50746.1| (AL096839) putative aminotransferase [Strep... 83 4e-15
dbj|BAA81033.1| (AP000063) 411aa long hypothetical tRNA spl... 79 5e-14
gi|882705 (U29581) ORF_o401 [Escherichia coli] >gi|1789175 ... 78 2e-13
dbj|BAA10545| (D64004) NifS [Synechocystis sp.] 76 3e-13
sp|P75298|NISH_MYCPN NIFS-LIKE PROTEIN >gi|2146475|pir||S73... 75 1e-12
dbj|BAA75914.1| (AB024602) NIFS-like protein [Pseudomonas p... 71 2e-11
emb|CAA15994| (AL021184) hypothetical protein Rv1464 [Mycob... 69 8e-11
pir||JC4557 capreomycin acetyltransferase (EC 2.3.1.-) - St... 67 3e-10
pir||S72761 nitrogen fixation protein homolog nifS - Mycoba... 61 1e-08
pir||G64117 nitrogen fixation protein (nifS) homolog - Haem... 61 2e-08
sp|Q49420|NISH_MYCGE NIFS-LIKE PROTEIN >gi|1361731|pir||B64... 59 5e-08
gi|2622218 (AE000881) glutamate decarboxylase [Methanobacte... 58 1e-07
gb|AAF22900.1|AC006932_17 (AC006932) T27G7.17 [Arabidopsis ... 57 3e-07
gi|2649253 (AE001012) group II decarboxylase [Archaeoglobus... 55 8e-07
dbj|BAA17725| (D90908) isopenicillin N epimerase [Synechocy... 55 1e-06
gi|2648533 (AE000964) group II decarboxylase [Archaeoglobus... 55 1e-06
sp|P42253|YCBU_BACSU HYPOTHETICAL 40.8 KD PROTEIN IN PCP-LM... 53 4e-06
gi|533117 (U13077) capreomycin acetyltransferase [Streptomy... 53 5e-06
gb|AAD19000| (AE001667) NifS-related Aminotransferase [Chla... 52 1e-05
emb|CAA22532.1| (AL034563) hypothetical 48.1 kd protein. [S... 51 2e-05
gi|3820527 (AF061964) L-cysteine/cystine lyase C-DES [Synec... 50 3e-05
dbj|BAA81279.1| (AP000064) 454aa long hypothetical glutamat... 48 2e-04
emb|CAB39873.1| (AL049497) putative aminotransferase [Strep... 46 4e-04
dbj|BAA30034| (AP000004) 383aa long hypothetical protein [P... 45 0.001
gi|3801005 (AF100673) similar to pyridoxal-dependent decarb... 43 0.003
gb|AAF13801.1|AF130813_1 (AF130813) NifS protein homolog [B... 43 0.004
gi|2121294 (AF000118) tRNA splicing protein [Candida maltosa] 43 0.004
sp|P31672|NIFS_LACDE NIFS PROTEIN HOMOLOG >gi|98662|pir||S16047 nifS protein homolog -
Lactobacillus delbrueckii >gi|43985|emb|CAA43493|
(X61190) nifS-like gene [Lactobacillus delbrueckii]
Length = 355
Score = 365 bits (928), Expect = e-100
Identities = 190/353 (53%), Positives = 243/353 (68%), Gaps = 1/353 (0%)
Query: 14 PMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFFTSGGTEGD 73
P L TY+ V TKI GNPSSLH LG A LLEASR+Q+A+LLGV++ EI+FTSGGTE +
Sbjct: 3 PKALETYSQVVTKIWGNPSSLHKLGDRAHGLLEASRKQVADLLGVNTDEIYFTSGGTESN 62
Query: 74 NWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEK 133
N +KG A+ KR +G HII S+VEH +V NT L+ GF V PVD +G V +L+
Sbjct: 63 NTAIKGTAWAKREFGKHIITSSVEHASVANTFTELENLGFRVTRLPVDKEGRVNPEDLKA 122
Query: 134 LIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERV 193
+ +T L+SIM VNNE+GTIQPI EIS++LAD P I FHVD VQA+GK + T RV
Sbjct: 123 ALDKDTTLVSIMGVNNEIGTIQPIKEISEILADYPNIHFHVDNVQALGKGIWDQVFTSRV 182
Query: 194 DFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENLAGIAATSKALRLA 253
D S+HKFHGPRG+GI+ K+G+ L PL GGGQE RS TENLA IAA +KA RL
Sbjct: 183 DMMSFSSHKFHGPRGIGILYKKRGRMLMPLCEGGGQEKGLRSGTENLAAIAAMAKAARLL 242
Query: 254 LDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVE-NFAPNILTFGIRGVRGEVVVHAFE 312
L D+ K + A+K+ I + L +H+FS ++ +FAP+IL F + G+RGE +VH E
Sbjct: 243 LTDEKEKADREYAIKEKISKYLAGKPGIHIFSPLKADFAPHILCFALEGIRGETLVHTLE 302
Query: 313 QHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQF 365
+IYISTTSAC+SKK A TLVAM P +ATSAVR+S D +N + E ++F
Sbjct: 303 DQDIYISTTSACASKKADEASTLVAMKTPDAIATSAVRLSFDESNTLEEADEF 355
gi|2293229 (AF008220) NifS2 [Bacillus subtilis] >gi|2635443|emb|CAB14937|
(Z99119) NifS protein homolog [Bacillus subtilis]
Length = 381
Score = 287 bits (727), Expect = 1e-76
Identities = 150/380 (39%), Positives = 232/380 (60%), Gaps = 2/380 (0%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIY DNS+TT VL Y +++ GNPSSLH G +LL+A++ QI LG+
Sbjct: 1 MIYLDNSSTTKPYDEVLNVYEQTSSRYFGNPSSLHRYGAETEQLLQAAKNQIKRSLGLKK 60
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQ-GFEVDFAP 119
+I FTSG TE +N LKG A K G HII +++EHP+V + E LK GF++ +
Sbjct: 61 YDIVFTSGATEANNAALKGAALSKIKTGKHIIATSIEHPSVTESLEQLKELFGFDITYLS 120
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQA 179
V+ DGFV + +L+ IR +T+L+S+M VNNEVG++QPI ++L + I FHVD VQ
Sbjct: 121 VNEDGFVSIEDLKAAIRPDTVLVSMMHVNNEVGSVQPIEAAGEVLKEHSNILFHVDYVQG 180
Query: 180 IGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTEN 239
I K+PL A +D +S HKFHG +G G ++ K+G RL PL+ GG Q+ R+ TE+
Sbjct: 181 IYKVPL-AIEKAGIDLCSISGHKFHGLKGTGALIVKEGTRLIPLITGGSQQKGIRAGTEH 239
Query: 240 LAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGI 299
AG + +KA+ LA D D + + A+K++ + L + V + + N AP+I+ F +
Sbjct: 240 TAGAVSLAKAINLASADFDTRLDTMTAVKELFMNRLSEIEGVVINTPQMNSAPHIINFSV 299
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
G++ EV++H E+ +I++STTSACS+K++ + L+ M ++A S++RISL+ +
Sbjct: 300 PGIKAEVLLHMLEEQDIFVSTTSACSAKEHKPSKVLLEMGKGEQIAGSSIRISLNYSQTS 359
Query: 360 AEVEQFLTVFRQIYQELEKV 379
E F+ R ++L ++
Sbjct: 360 DVAEPFMNALRPGIKKLREM 379
gb|AAD36759.1|AE001809_11 (AE001809) aminotransferase, class V [Thermotoga maritima]
Length = 384
Score = 285 bits (722), Expect = 4e-76
Identities = 159/379 (41%), Positives = 229/379 (59%), Gaps = 7/379 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
+YFDN+ATT V+ VL + GNP+S HG+G A +E +R ++A++LGV
Sbjct: 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVLGVSPS 62
Query: 62 EIFFTSGGTEGDNWILKGVA--FEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAP 119
EIFFTS TE NWILK VA FEKR II + +EH AV T ++L +GF+V + P
Sbjct: 63 EIFFTSCATESINWILKTVAETFEKRK--RTIITTPIEHKAVLETMKYLSMKGFKVKYVP 120
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISF-HVDAVQ 178
VD G V + ELEKL+ ++T L+SIMA NNEVGTIQP+ +++ ++ K + HVDAVQ
Sbjct: 121 VDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQ 180
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
IGKIP E VD+A SAHKFHGP+GVGI +KG + PL+HGGGQE RS T+
Sbjct: 181 TIGKIPFSLEKLE-VDYASFSAHKFHGPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQ 239
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
N+ GI ++A+ +A+++ + + ++ ++ L + H+ + +E PN L+
Sbjct: 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGL-MNLGAHIITPLEISLPNTLSVS 298
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
+RG + + + IY+ST+SAC+SK + L AM V ++A A+RISL N
Sbjct: 299 FPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLSHVLDAMGVDRRIAQGAIRISLCKYNT 358
Query: 359 MAEVEQFLTVFRQIYQELE 377
EV+ FL +I L+
Sbjct: 359 EEEVDYFLKKIEEILSFLD 377
gi|4154727 (AE001459) putative AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 387
Score = 249 bits (630), Expect = 2e-65
Identities = 143/382 (37%), Positives = 216/382 (56%), Gaps = 5/382 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGT-TATRLLEASRRQIAELLGVDS 60
IY DN+ATT ++P V GNPSSLH GT T + EA + + D
Sbjct: 5 IYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARDI 64
Query: 61 QEIFFTSGGTEGDNWILKGVAFEK--RPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
++ TS TE +NW+LKGV F++ + NHII + EHPAV++T +L++ G EV +
Sbjct: 65 DDVIITSCATESNNWVLKGVYFDECLKKGKNHIITTVAEHPAVRSTCNFLESLGVEVTYL 124
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
P++ G + ++++ I ++T L+S+M NNE G I PI EI + +K + FH DAVQ
Sbjct: 125 PINEHGSITADQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKGVL-FHTDAVQ 183
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
AIGKIP++ L VDF SAHKFHGP+G+G + + G LTPL HGG + RS T
Sbjct: 184 AIGKIPVDV-LKANVDFLSFSAHKFHGPKGIGGLYIRSGVGLTPLFHGGEHMNGRRSGTL 242
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
N+ I +A++LA++ D++++ V ++ + E L K V V + PN
Sbjct: 243 NVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLEEALLKIPDVMVVGDRVHRVPNTTLIS 302
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
+RG+ GE ++ + I ST SAC+S+ A +VA+ +LA +A+R+SL N
Sbjct: 303 VRGIEGEAMLWDLNRSNIAASTGSACASEDLEANPVMVAIGASKELAHTAIRLSLSRFNT 362
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
AE+++ + VF Q L +S
Sbjct: 363 EAEIDKTIEVFSQAAVRLRNIS 384
gb|AAD07288.1| (AE000542) synthesis of [Fe-S] cluster (nifS) [Helicobacter pylori
26695]
Length = 387
Score = 247 bits (623), Expect = 2e-64
Identities = 141/382 (36%), Positives = 215/382 (55%), Gaps = 5/382 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGT-TATRLLEASRRQIAELLGVDS 60
IY DN+ATT ++P V GNPSSLH GT T + EA + + D
Sbjct: 5 IYLDNNATTRIDPKVKEIMDPFLRDHYGNPSSLHQFGTETHPAIAEALDKLYKGINARDI 64
Query: 61 QEIFFTSGGTEGDNWILKGVAFEK--RPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
++ TS TE +NW+LKGV F++ + NHI+ + EHPAV++T +L++ G EV +
Sbjct: 65 DDVIITSCATESNNWVLKGVYFDECLKKGKNHIVTTVAEHPAVRSTCNFLESLGVEVTYL 124
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
P++ G + ++++ I ++T L+S+M NNE G I PI EI + +K + FH DAVQ
Sbjct: 125 PINEHGSITAEQVKEAITEKTALVSVMWANNETGLIFPIEEIGAICKEKGVL-FHTDAVQ 183
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
AIGKIP++ L DF SAHKFHGP+G+G + + G LTPL HGG + RS T
Sbjct: 184 AIGKIPVDV-LKANADFLSFSAHKFHGPKGIGGLYIRSGVGLTPLFHGGEHMNGRRSGTL 242
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
N+ I +A++LA++ D++++ V ++ + E L K V V + PN
Sbjct: 243 NVPYIVGMGEAMKLAVEHLDYEKEVVGKLRDKLEEALLKIPDVMVVGDRIHRVPNTTLVS 302
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
+RG+ GE ++ + I ST SAC+S+ A +VA+ +LA +A+R+SL N
Sbjct: 303 VRGIEGEAMLWDLNRSNIAASTGSACASEDLEANPVMVAIGASKELAHTAIRLSLSRFNT 362
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
AE+++ + VF Q L +S
Sbjct: 363 EAEIDKTIEVFSQAAVRLRNIS 384
sp|Q43884|NIFS_ANAAZ NIFS PROTEIN >gi|762778 (L34879) NifS gene product [Anabaena
azollae]
Length = 400
Score = 242 bits (610), Expect = 5e-63
Identities = 142/381 (37%), Positives = 206/381 (53%), Gaps = 4/381 (1%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
+IY DN+ATT V+P V+ T GNPSS+H G + + +R Q+A LLG D
Sbjct: 3 VIYLDNNATTKVDPEVVEAIMPYLTDYYGNPSSMHTFGGQLGKAVRTAREQVAALLGADE 62
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS GTEGDN ++ A +P HII + VEHPAV N + L+TQG+ V + V
Sbjct: 63 SEIVFTSCGTEGDNAAIR-AALLAQPEKRHIITTQVEHPAVLNVCKQLETQGYTVTYLSV 121
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+G G + + ELE + T L++IM NNE GT+ PI EI + ++ I FHVDAVQA+
Sbjct: 122 NGHGQLDLDELEASLTGNTALVTIMYANNETGTVFPIEEIGKRVKERGAI-FHVDAVQAV 180
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIPL T +D +S HK H P+G+G + ++G R PLL GG QE R+ TEN+
Sbjct: 181 GKIPLN-MKTSTIDMLTISGHKIHAPKGIGALYVRRGVRFRPLLIGGHQERGRRAGTENV 239
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVILEE-LEKHRKVHVFSKVENFAPNILTFGI 299
GI KA L L + +K ++ + + L K V V PN G
Sbjct: 240 PGIVGLGKAAELELIHIETAIKKETRLRDRLEQTLLAKIPDCEVNGDVTQRLPNTTNIGF 299
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
+ + GE ++ + ++ I S+ SAC+S + L AM +P ++R SL
Sbjct: 300 KYIEGEAILLSLNKYGICASSGSACTSGSLEPSHVLRAMGLPYTTLHGSIRFSLCRYTTE 359
Query: 360 AEVEQFLTVFRQIYQELEKVS 380
A++++ + V +I + L +S
Sbjct: 360 AQIDRVIEVMPEIVERLRALS 380
sp|P12623|NIFS_ANASP NIFS PROTEIN >gi|97706|pir||C34443 nitrogen fixation protein nifS -
Anabaena sp >gi|142037 (J05111) nifS [Anabaena sp.]
Length = 400
Score = 238 bits (602), Expect = 4e-62
Identities = 140/381 (36%), Positives = 205/381 (53%), Gaps = 4/381 (1%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
+IY DN+ATT V+P V+ T GNPSS+H G + + +R Q+A LLG D
Sbjct: 3 VIYLDNNATTKVDPDVVEAIMPYLTDYYGNPSSMHTFGGQLGKAVRTAREQVAALLGADE 62
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS GTEGDN ++ A +P HII + VEHPAV N + L+TQG+ V + V
Sbjct: 63 SEIVFTSCGTEGDNAAIR-AALLAQPAKRHIITTQVEHPAVLNVCKQLETQGYTVTYLSV 121
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ G + + ELE + T L++IM NNE GT+ PI EI + ++ I FHVDAVQA+
Sbjct: 122 NSHGQLDLDELEASLTGNTALVTIMYANNETGTVFPIEEIGKRVKERGAI-FHVDAVQAV 180
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIPL T +D +S HK H P+G+G + ++G R PLL GG QE R+ TEN+
Sbjct: 181 GKIPLN-MKTSTIDMLTISGHKIHAPKGIGALYVRRGVRFRPLLIGGHQERGRRAGTENV 239
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVILEE-LEKHRKVHVFSKVENFAPNILTFGI 299
GI KA L L + +K ++ + + L K V + PN G
Sbjct: 240 PGIVGLGKAAELELIHIETAIKKETRLRDRLEQTLLAKIPDCEVNGDITQRLPNTTNIGF 299
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
+ + GE ++ + ++ I S+ SAC+S + L AM +P ++R SL
Sbjct: 300 KYIEGEAILLSLNKYGICASSGSACTSGSLEPSHVLRAMGLPYTTLHGSIRFSLCRYTTE 359
Query: 360 AEVEQFLTVFRQIYQELEKVS 380
A++++ + V +I + L +S
Sbjct: 360 AQIDRVIEVMPEIVERLRALS 380
gi|1236927 (U49859) NifS2 [Anabaena variabilis]
Length = 398
Score = 230 bits (580), Expect = 2e-59
Identities = 139/383 (36%), Positives = 206/383 (53%), Gaps = 9/383 (2%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
+IY DN+ATT V+ VL T+ GNPSS+H G + ++ +R Q+A LLG +
Sbjct: 3 VIYLDNNATTQVDAEVLAAMLPYLTEFYGNPSSMHTFGGQVGKAVQQARGQVAFLLGAEE 62
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS GTEG+N +K A +P HII + VEH A+ N + L+ QG++V + V
Sbjct: 63 SEIIFTSCGTEGNNAAIK-AALAAQPEKRHIITTQVEHAAIINVCKQLEKQGYKVTYLSV 121
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G + + ELE + +T L+S M NNE G + PI +I D I FHVDAVQA+
Sbjct: 122 DSQGQIDLLELEAALTGDTALVSTMYANNETGVVFPIEQIGLRAKDAGAI-FHVDAVQAV 180
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GK+PL T +D LS HK H P+G+G + ++G R PLL GG QE R+ TEN+
Sbjct: 181 GKVPLNL-KTSSIDMLTLSGHKLHAPKGIGALYIRRGVRFRPLLVGGHQERGRRAGTENV 239
Query: 241 AGIAATSKALRLA-LDDDDFKRQKV--RAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
G+ A KA LA + D KR+K ++Q +L + V + P
Sbjct: 240 PGMIALGKAAELAQIHLKDVKREKALRDRLEQGLLSAIP---NTEVNGHPTSRLPTPTNI 296
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
G + + GE ++ + ++ I S+ SAC+S ++ L AM +P + ++R SL
Sbjct: 297 GFKYIEGEAILLSLNKYGICASSGSACTSGSLESSHVLRAMGLPYTILHGSIRFSLSRYT 356
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
AE+++ L + I + L +S
Sbjct: 357 TEAEIDKVLQLMPPIVERLRAIS 379
emb|CAA05909.1| (AJ003152) cysteine desulphurase [Ruminococcus flavefaciens]
Length = 396
Score = 228 bits (576), Expect = 5e-59
Identities = 130/380 (34%), Positives = 210/380 (55%), Gaps = 3/380 (0%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
IY DN+ATTAV+ VL GN SS++ LG A R +E +R ++A+ LG + +
Sbjct: 6 IYADNAATTAVSEEVLSAMLPYFRTAYGNASSIYKLGRDAQRDVELAREKVAKALGAEPR 65
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGN-HIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI+FTS G+E DNW +KG A G HI+ S EH AV +T E+L+ G+EV + PV
Sbjct: 66 EIYFTSCGSESDNWAIKGTAELMAKKGKKHIVTSVFEHHAVLHTCEYLEKHGYEVTYVPV 125
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ G + ++ K +R++T L++IM NNE+GTIQPI EI+ + +K + FH DAVQA+
Sbjct: 126 NDKGLIDPEDVRKAVREDTALVTIMYANNEIGTIQPIEEIAAVCREKGVL-FHTDAVQAV 184
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
G + ++ + +D LS HK H +G+G + +KG L L+HGGGQE R+ TEN+
Sbjct: 185 GHVDIDVH-KQGIDMLSLSGHKIHAQKGIGAIYIRKGIVLPNLVHGGGQERGKRAGTENV 243
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIR 300
I A+ A+ + K + + I++EL K + E P +
Sbjct: 244 PAIVGLGVAIEAAVRNTAEKAAIIIPRRNRIIDELLKIPYTRLNGDREKRLPGNINISFE 303
Query: 301 GVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMA 360
G+ GE ++ + + I S+ SAC+S + L+++ + +A ++R+S++ +
Sbjct: 304 GIEGESLLLMLDLNGICASSGSACTSGSLDPSHVLLSIGLKHAVAHGSLRLSIEEDVSDE 363
Query: 361 EVEQFLTVFRQIYQELEKVS 380
+VE + ++ Q L +S
Sbjct: 364 DVEYIIETIPKVVQRLRSMS 383
emb|CAB14693| (Z99117) similar to NifS protein homolog [Bacillus subtilis]
>gi|2635215|emb|CAB14710| (Z99118) similar to NifS
protein homolog [Bacillus subtilis]
Length = 346
Score = 227 bits (573), Expect = 1e-58
Identities = 123/338 (36%), Positives = 195/338 (57%), Gaps = 3/338 (0%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
IY D++AT+ ++ VL + GNPSS+H G + + ++ +R QIA +G Q
Sbjct: 4 IYLDHAATSPMDERVLEQMIPHFSGSFGNPSSIHSFGRESRKWVDEARAQIAAEIGAAEQ 63
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVD 121
EI FTSGGTE DN + G A ++ G HII + +EH AV +T E L+ GF++ + VD
Sbjct: 64 EIIFTSGGTEADNLAIMGTALARKDLGRHIITTKIEHHAVLHTCEKLEGDGFDITYLDVD 123
Query: 122 GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIG 181
+G V ++++ +RD+TIL+++M NNEVGT+QPI EI +LL + FH DAVQA G
Sbjct: 124 QNGRVSAKQVKEALRDDTILVTVMYGNNEVGTVQPIEEIGELLKEHKAY-FHTDAVQAFG 182
Query: 182 KIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENLA 241
+P++ +D +S HK +GP+G G + A K +L+PLL GG QE R+ TEN+
Sbjct: 183 LLPIDV-KNSHIDLLSVSGHKLNGPKGTGFLYASKDVKLSPLLFGGEQERKRRAGTENVP 241
Query: 242 GIAATSKALRLALDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPNILTFGIR 300
GI +A++L+ ++ D K +K ++ K + + L + V E+ P++L
Sbjct: 242 GIVGLKEAIKLSSEERDEKNEKYQSFKAIFADTLRDAGVAFEVNGDKEHSLPHVLNLYFP 301
Query: 301 GVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAM 338
GV E ++ + + +S+ SAC++ + L AM
Sbjct: 302 GVSVEALLVNLDMAGVAVSSGSACTAGSVLPSHVLTAM 339
gi|2650451 (AE001093) nifS protein, class-V aminotransferase (nifS-1)
[Archaeoglobus fulgidus]
Length = 392
Score = 227 bits (572), Expect = 1e-58
Identities = 130/382 (34%), Positives = 216/382 (56%), Gaps = 7/382 (1%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M YFD ++T V+ V+ T+ GNPSS+H G A ++E +R +I+EL+
Sbjct: 11 MPYFDYASTKPVDERVVEAMLPYMTEHFGNPSSVHSYGFKAREVIEEARGKISELINGGG 70
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+I FTSG TE +N L G A G H++VS++EH +V N A++L+ QGFEV+F PV
Sbjct: 71 GDIVFTSGATESNNLALIGYAMRNARKGKHVLVSSIEHMSVINPAKYLQKQGFEVEFIPV 130
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G V + +E+ IR++TIL+S+ NNE+GTIQPI EIS+++ + + HVDA ++
Sbjct: 131 DKYGTVDLEFIEEKIREDTILVSVQHANNEIGTIQPIKEISEIINGRAAL--HVDATASL 188
Query: 181 GKIPLEAWLTERV--DFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
G+I ++ E++ D +S++ +GP+GVG + ++G RL P++ GGGQE RS +E
Sbjct: 189 GQIEVD---VEKIGADMLTISSNDIYGPKGVGALWVRQGVRLQPIILGGGQEKGLRSGSE 245
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
N+ I KA + + + ++R ++ I++ + K + ++ E PN +
Sbjct: 246 NVPAIVGFGKAAEITAKEWGEEAGRLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVR 305
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
+ GE +V + + I ST SACSSK + L+A + + A + ++L N
Sbjct: 306 FSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT 365
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
+V++ L V + + L +S
Sbjct: 366 DEDVDRLLEVLPGVIERLRSMS 387
emb|CAB72709.1| (AL139074) putative aminotransferase (nifS protein homolog)
[Campylobacter jejuni]
Length = 393
Score = 226 bits (569), Expect = 3e-58
Identities = 145/383 (37%), Positives = 210/383 (53%), Gaps = 7/383 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGT-TATRLLEASRRQIAELLGVDS 60
+Y DN+ATT ++P + GNP+SLH G+ T L EA + A L D
Sbjct: 3 VYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHPALREALDKLYAGLGANDL 62
Query: 61 QEIFFTSGGTEGDNWILKGVAFEK--RPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
+I TS TE NW+LKGV F+ N +I+S+VEHPAV A +LK+ G +V
Sbjct: 63 DDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEHPAVTAAAYFLKSLGVKVIEL 122
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
PV+ +G V +L K+I D+T L+S+M NNE G I I +++L + + FH DA Q
Sbjct: 123 PVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFDIKAMAELAHEFGAL-FHTDATQ 181
Query: 179 AIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTT 237
A+GKI + LT+ VDFA SAHKFHGP+GVG + KKG +LTPLLHGG RS T
Sbjct: 182 AVGKIKVN--LTQVGVDFASFSAHKFHGPKGVGGLFIKKGLKLTPLLHGGEHMGGRRSGT 239
Query: 238 ENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
N+ I A +ALR+A DF+ +R ++ + +++ V K E+ PN +
Sbjct: 240 LNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQILALPDTTVVGKREHRVPNTILA 299
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
I+GV GE ++ ++ I ST SAC+S+ + + A+ LA +A+R+SL N
Sbjct: 300 SIKGVEGEAMLWDLNKNGIAASTGSACASEALESNPIMEAIGAEHDLAHTALRLSLSRFN 359
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
E++ + Q L +S
Sbjct: 360 TEEEIDYAAKQIKNATQRLRAIS 382
sp|P55690|NIFS_RHISN NIFS PROTEIN >gi|2182702 (AE000104) NifS [Rhizobium sp. NGR234]
Length = 387
Score = 224 bits (565), Expect = 1e-57
Identities = 144/381 (37%), Positives = 204/381 (52%), Gaps = 8/381 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
IY DN+ATT V+ VL+ + GN SS+H G TA + +RRQ+ L+G
Sbjct: 4 IYLDNNATTRVDAEVLQAMLPFFADVFGNASSMHDAGATAGAAINVARRQLQALIGAKFD 63
Query: 61 QEIFFTSGGTEGDNW-ILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVDFA 118
EI FTSGGTE +N IL G+ E P I+ S VEHPAV L KT+G +V
Sbjct: 64 PEITFTSGGTESNNAAILSGL--EAMPERTEIVTSAVEHPAVLTLCTHLEKTRGTKVHKV 121
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
PVD G + + + + ++SIM NNE GTI P+ +++++ A K FH DAVQ
Sbjct: 122 PVDHQGRLDLDAYQDALTHRVAIVSIMWANNETGTIFPVVKLAEM-AKKVGAIFHTDAVQ 180
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
AIGK+P++ T +D LSAHKFHGP+GVG + K+G L+ GG QE + R+ TE
Sbjct: 181 AIGKLPIDLKSTA-IDMLSLSAHKFHGPKGVGALYIKRGVPFHALIKGGHQERDRRAGTE 239
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEE-LEKHRKVHVFSKVENFAPNILTF 297
N GI KA LALD D +R+ + + + LE+ +V V PN +
Sbjct: 240 NTPGIVGLGKAAELALDCMDKDNAIIRSFRDRLEKGLLERVPQVFVMGDPVTRLPNTTSI 299
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
GV GE + +H I S+ SAC+S+ + + L AM P + A AVR SL N
Sbjct: 300 AFEGVGGEAMQFLLNRHGIACSSGSACTSRSLSTSHVLKAMGTPHRQAVGAVRFSLSGYN 359
Query: 358 NMAEVEQFLTVFRQIYQELEK 378
++++ L V + ++L +
Sbjct: 360 CEEDIDRVLRVIPAVVKKLRE 380
dbj|BAA10109| (D63999) NifS protein [Synechocystis sp.]
Length = 386
Score = 223 bits (563), Expect = 2e-57
Identities = 133/369 (36%), Positives = 201/369 (54%), Gaps = 5/369 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
+YFDN ATTA++P VL T+ GN S H G A+ ++ +R++IAE +G +
Sbjct: 5 LYFDNHATTALDPRVLEAMLPYLTEQYGNAGSAHFYGWQASAAIKQARQEIAETMGAQPE 64
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVD 121
EI FTSG TE +N ++GVA G H++ EH AV +L+T GFEV + V
Sbjct: 65 EIIFTSGATEANNLAIRGVAEAYFAQGKHLVTVETEHQAVLAPCRYLETLGFEVTYLSVQ 124
Query: 122 GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIG 181
G V ++ELEK +R +TIL+S+MA NNE+G +QP+ EI L + +I FH D QA+G
Sbjct: 125 SSGLVDLTELEKALRPDTILVSVMAANNEIGVLQPLKEIGALCRQR-SIIFHCDGAQALG 183
Query: 182 KIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKK--GKRLTPLLHGGGQEHNWRSTTEN 239
KIPL+ +D + HK HGP+G+G + ++ G RL P L GGGQE N+RS T
Sbjct: 184 KIPLDVHQL-NIDLLSFTGHKIHGPKGIGGLYRRQNPGVRLAPQLLGGGQEGNFRSGTLP 242
Query: 240 LAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGI 299
+ I +KAL +A + + + R ++ + + L K V + E P L I
Sbjct: 243 VPLIVGLAKALTIAGETLVSEGDRQRQLRDQLWQGLAKISGVVLNGDYEQRLPGNLNVSI 302
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
GV + ++ Q + +S+ SACSS + A+ L A+ A +++R L
Sbjct: 303 TGVDPKALLTTL-QPRLALSSGSACSSYRTEASHVLYALGRDKTSAQASLRFGLSRFTTE 361
Query: 360 AEVEQFLTV 368
E++Q + +
Sbjct: 362 IEIDQAIAI 370
sp|Q01179|NIFS_RHOSH NIFS PROTEIN >gi|282176|pir||C41880 nitrogenase stabilizer NifS -
Rhodobacter sphaeroides >gi|151968 (M86823) nifS
[Rhodobacter sphaeroides]
Length = 387
Score = 223 bits (563), Expect = 2e-57
Identities = 142/382 (37%), Positives = 201/382 (52%), Gaps = 9/382 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
+Y DN+ATT + P L+ T+ GNPSSLHG G R L A+RR + EL+G ++
Sbjct: 4 VYLDNNATTRLAPEALQAMLPFLTEEFGNPSSLHGQGRAPARALMAARRAVLELIGAEAD 63
Query: 62 -EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQ-GFEVDFAP 119
EI FTSGGTE D ++ A P I+ S VEH AV + L+ Q G V P
Sbjct: 64 SEILFTSGGTEADTTAIRS-ALAADPSRREIVTSTVEHAAVLALCDHLERQEGVTVHRIP 122
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQA 179
VDGDG + + + L+S+M NNE GT+ P+ +++L A + FH DAVQA
Sbjct: 123 VDGDGRLDIEAYRAALSPRVALVSLMWANNETGTVFPVEGLAEL-AHRAGALFHTDAVQA 181
Query: 180 IGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTEN 239
+GK+P+ TE +D LSAHKFHGP+GVG + +KG PL+ GG Q+ R+ TEN
Sbjct: 182 VGKVPIVLRGTE-IDMLSLSAHKFHGPKGVGALWLRKGVPFQPLIRGGRQQRGHRAGTEN 240
Query: 240 LAGIAATSKALRLALDDDDFKRQKVR-AMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
+ GI +A LAL D + +R ++Q IL + K R V + PN
Sbjct: 241 IPGIVGLGRAAELALGGDHGAVRLLRDRLEQGILARVPKAR---VLGDPLDRLPNTSCVA 297
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
GE +V ++ I +S+ +AC+S + + AM VP A A+R SL
Sbjct: 298 FDFAEGEAIVMLLDRAGICVSSGAACASGAMEPSHVIRAMKVPFTAAHGAIRFSLSHWTT 357
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
AE+++ L V I +L +S
Sbjct: 358 AAEIDRLLEVLPPIVDQLRALS 379
sp|P39171|NIFS_ECOLI NIFS PROTEIN HOMOLOG >gi|1799938|dbj|BAA16424| (D90883) UNKNOWN
PROTEIN FROM 2D-PAGE (SPOT M92) (FRAGMENT). [Escherichia
coli]
Length = 404
Score = 222 bits (561), Expect = 3e-57
Identities = 134/385 (34%), Positives = 215/385 (55%), Gaps = 11/385 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATK--IMGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D SATT V+P V T GNP+S H G A ++ +R QIA+L+G
Sbjct: 5 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 64
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
D +EI FTSG TE DN +KG A + G HII S EH AV +T L+ +GFEV +
Sbjct: 65 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYL 124
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
+G + + ELE +RD+TIL+SIM VNNE+G +Q I I ++ + I +HVDA Q
Sbjct: 125 APQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGII-YHVDATQ 183
Query: 179 AIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRS 235
++GK+P++ L++ +VD S HK +GP+G+G + ++ R+ +HGGG E RS
Sbjct: 184 SVGKLPID--LSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 241
Query: 236 TTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNIL 295
T + I +A R+A ++ + +++R ++ + ++ +V++ +E+ APNIL
Sbjct: 242 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNIL 301
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
V GE ++ A + ++ +S+ SAC+S + L A+ + +LA S++R SL
Sbjct: 302 NVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGR 359
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
E++ + + R+ L +S
Sbjct: 360 FTTEEEIDYTIELVRKSIGRLRDLS 384
gi|1788879 (AE000339) putative aminotransferase [Escherichia coli]
Length = 412
Score = 222 bits (561), Expect = 3e-57
Identities = 134/385 (34%), Positives = 215/385 (55%), Gaps = 11/385 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATK--IMGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D SATT V+P V T GNP+S H G A ++ +R QIA+L+G
Sbjct: 13 IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGA 72
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
D +EI FTSG TE DN +KG A + G HII S EH AV +T L+ +GFEV +
Sbjct: 73 DPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYL 132
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
+G + + ELE +RD+TIL+SIM VNNE+G +Q I I ++ + I +HVDA Q
Sbjct: 133 APQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGII-YHVDATQ 191
Query: 179 AIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRS 235
++GK+P++ L++ +VD S HK +GP+G+G + ++ R+ +HGGG E RS
Sbjct: 192 SVGKLPID--LSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRS 249
Query: 236 TTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNIL 295
T + I +A R+A ++ + +++R ++ + ++ +V++ +E+ APNIL
Sbjct: 250 GTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNIL 309
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
V GE ++ A + ++ +S+ SAC+S + L A+ + +LA S++R SL
Sbjct: 310 NVSFNYVEGESLIMALK--DLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGR 367
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
E++ + + R+ L +S
Sbjct: 368 FTTEEEIDYTIELVRKSIGRLRDLS 392
gi|2650055 (AE001065) nifS protein, class-V aminotransferase (nifS-2)
[Archaeoglobus fulgidus]
Length = 382
Score = 221 bits (557), Expect = 8e-57
Identities = 127/382 (33%), Positives = 214/382 (55%), Gaps = 7/382 (1%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M YFD ++ V+ VL T+ GNPSS+H G A ++ +R ++A+L+
Sbjct: 1 MAYFDYTSAKPVDERVLEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGG 60
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+ FTSG TE +N + G A G HI+VS VEH +V N A++L+ QGFEV++ PV
Sbjct: 61 GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPV 120
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
G V VS +++ +RD+TIL+S+ NNE+GTIQP+ EIS++LA K + H+DA ++
Sbjct: 121 GKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAAL--HIDATASV 178
Query: 181 GKIPLEAWLTERV--DFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
G+I ++ E++ D +S++ +GP+GVG + +K +L P++ GGGQE+ RS +E
Sbjct: 179 GQIEVD---VEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSGSE 235
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
N+ I KA + + + +++R ++ I++ + K + ++ E PN +
Sbjct: 236 NVPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVR 295
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
+ GE +V + + I ST SACSSK + L+A + + A + ++L N
Sbjct: 296 FSYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT 355
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
+V++ L V + + L +S
Sbjct: 356 DEDVDRLLEVLPGVIERLRSMS 377
emb|CAA07007| (AJ006406) AgSPL1 [Eremothecium gossypii]
Length = 490
Score = 213 bits (536), Expect = 2e-54
Identities = 129/382 (33%), Positives = 205/382 (52%), Gaps = 7/382 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D ATT +P V+ T T + GNP S+ H G ++ +E +R+ +A+++ D
Sbjct: 93 IYLDMQATTPTDPRVVDTMLKFYTGLYGNPHSNTHSYGWETSQEVEKARKNVADVIKADP 152
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N LKGVA + NHII + EH V A +K +GF+V F V
Sbjct: 153 KEIIFTSGATESNNMALKGVARFYKKRKNHIITTRTEHKCVLEAARSMKDEGFDVTFLNV 212
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ DG V + ELE+ IR ET L+S+M+VNNE+G +QPI EI + + + FH DA QA
Sbjct: 213 NEDGLVSLEELEQAIRPETSLVSVMSVNNEIGVVQPIKEIG-AICRRHKVFFHSDAAQAY 271
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKIP++ +D +S+HK +GP+G+G + ++ R+ PLL GGGQE +RS T
Sbjct: 272 GKIPIDV-DEMNIDLLSISSHKIYGPKGIGALYVRRRPRVRMEPLLSGGGQERGFRSGTL 330
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
+ A +L +++ ++ VR + +L+ L + + ++ P +
Sbjct: 331 PPPLVVGLGHAAKLMVEEYEYDSAHVRRLSDRLLKGLLSIEQTTLNGSADHRYPGCVNVS 390
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
V GE ++ A +I +S+ SAC+S + L A+ LA S++R +
Sbjct: 391 FAFVEGESLLMAL--RDIALSSGSACTSASLEPSYVLHAIGRDDALAHSSIRFGIGRFTT 448
Query: 359 MAEVEQFLTVFRQIYQELEKVS 380
AEV+ + + + L ++S
Sbjct: 449 EAEVDYVIKAITERVEFLRELS 470
gb|AAC33372| (AF001780) NifS [Cyanothece PCC8801]
Length = 400
Score = 207 bits (522), Expect = 1e-52
Identities = 133/383 (34%), Positives = 198/383 (50%), Gaps = 12/383 (3%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
IY DN+ATT V+ VL T GNPSS+H G + +R Q+A LLG +
Sbjct: 5 IYLDNNATTQVDEEVLGAMLPYLTLYYGNPSSMHTFGGQVGSAIRTAREQVAALLGAEPS 64
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVD 121
EI FTS GTEGDN ++ A +P HII + VEHPA+ N + L+ QG+ V + V+
Sbjct: 65 EIVFTSCGTEGDNAAIR-AALAAQPNKRHIITTEVEHPAILNLCKNLERQGYTVTYLSVN 123
Query: 122 GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIG 181
G + +SELE + T ++SIM NNE G I P+ ++ + + + FHVDAVQA+G
Sbjct: 124 NQGQLDLSELEASLTGNTAVVSIMYANNETGVIFPVEQVGQMAKEYGAL-FHVDAVQAVG 182
Query: 182 KIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENLA 241
K+PL +D A KF P+G+ + + ++ R PLL GG QE R+ TEN+
Sbjct: 183 KVPLN-MAESTIDMLTYPAIKFMPPKGL-VHICRRNTRFRPLLIGGHQERGRRAGTENVP 240
Query: 242 GIAATSKALRLA---LDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPNILTF 297
GI A KA LA L +R+ ++Q IL + + H ++ PN
Sbjct: 241 GIVALGKAAELAAYHLQYGTSERELRDYLEQTILTIIPDTVLNGHPVQRL----PNTSNI 296
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
G + + GE ++ + Q+ I S+ SAC+S + L AM +P + ++R SL
Sbjct: 297 GFKFIEGEAILLSLNQYGICASSGSACTSGSLEPSHILRAMGLPYSVLHGSIRFSLSRFT 356
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
++++ L V I L +S
Sbjct: 357 TQEQIQKVLEVLPGIIDRLRALS 379
sp|P87185|SPL1_CANAL TRNA SPLICING PROTEIN SPL1 >gi|2121284 (AF000120) tRNA splicing
protein [Candida albicans]
Length = 488
Score = 206 bits (520), Expect = 2e-52
Identities = 126/384 (32%), Positives = 202/384 (51%), Gaps = 9/384 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D ATT V+P VL + T + GNP SS H G + +E +R IA+++ D
Sbjct: 89 IYLDVQATTPVDPRVLDKMLEFYTGLYGNPHSSTHAYGWETDKEVEKARTYIADVINADP 148
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N +KGV + HII + EH V ++A ++ +GFEV + PV
Sbjct: 149 KEIIFTSGATETNNMAIKGVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFEVTYLPV 208
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+G + + +L+K IR +T+L+SIMAVNNE+G IQP+ EI + + + FH DA QA
Sbjct: 209 SSEGLINLDDLKKAIRKDTVLVSIMAVNNEIGVIQPLKEIGKICREN-KVFFHTDAAQAY 267
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKIP++ +D +S+HK +GP+G+G ++ RL P++ GGGQE RS T
Sbjct: 268 GKIPIDV-NEMNIDLLSISSHKIYGPKGIGACYVRRRPRVRLDPIITGGGQERGLRSGTL 326
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEK--HRKVHVFSKVENFAPNILT 296
+A +A RL + F ++ + + + L + + + ++ P +
Sbjct: 327 APPLVAGFGEAARLMKQESSFDKRHIEKLSSKLKNGLLSIPSTQFNGCNDAKSQYPGCVN 386
Query: 297 FGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDST 356
+ GE ++ A + +I +S+ SAC+S + L A+ LA S++R +
Sbjct: 387 VSFAYIEGESLLMALK--DIALSSGSACTSASLEPSYVLHALGADDALAHSSIRFGIGRF 444
Query: 357 NNMAEVEQFLTVFRQIYQELEKVS 380
AEV+ + + L K+S
Sbjct: 445 TTEAEVDYVIQAINERVDFLRKMS 468
pir||S02507 nifS protein - Klebsiella pneumoniae >gi|43831|emb|CAA31675|
(X13303) nifS protein (AA 1-400) [Klebsiella pneumoniae]
Length = 400
Score = 206 bits (518), Expect = 3e-52
Identities = 130/383 (33%), Positives = 188/383 (48%), Gaps = 10/383 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT ++PMVL T GNPSS+H G A LE + +Q A LLG +
Sbjct: 4 VYLDNNATTRLDPMVLEAMMPFLTDFYGNPSSIHDFGIPAQAALERAHQQAAALLGAEYP 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS TE + A P II S VEHPA E ++ +G+ + V
Sbjct: 64 SEIIFTSCATEATATAIAS-AIALLPERREIITSVVEHPATLAACEHMEREGYRIHRIAV 122
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
DG+G + +++ + L+S+M NNE G + PIGE+++L ++ + FH DAVQ +
Sbjct: 123 DGEGALDMAQFRAALSPRVALVSVMWANNETGVLFPIGEMAELAHEQGAL-FHCDAVQVV 181
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIP+ T R+D SAHKFHGP+GVG + ++G R PLL GG QE+ R+ TEN+
Sbjct: 182 GKIPIAVGQT-RIDMLSCSAHKFHGPKGVGCLYLRRGTRFRPLLRGGHQEYGRRAGTENI 240
Query: 241 AGIAATSKALRLA---LDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
GI A LA L Q ++ +L + V V + P +
Sbjct: 241 CGIVGMGAACELANIHLPGMTHIGQLRNRLEHRLLASVP---SVMVMGGGQPAVPGTVNL 297
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
+ GE ++ Q I S+ SAC+S + + AMN+P A +R SL
Sbjct: 298 AFEFIEGEAILLLLNQAGIAASSGSACTSGSLEPSHVMRAMNIPYTAAHGTIRFSLSRYT 357
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
E++ + I L +S
Sbjct: 358 REKEIDYVVATLPPIIDRLRALS 380
gi|142397 (M17349) nifS protein [Azotobacter vinelandii]
Length = 402
Score = 206 bits (518), Expect = 3e-52
Identities = 127/381 (33%), Positives = 195/381 (50%), Gaps = 5/381 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT V+ +++ T+ GNPSSLH LG L+ +R+ + +LLG +
Sbjct: 4 VYLDNNATTRVDDEIVQAMLPFFTEQFGNPSSLHSLGNQVGMALKKARQSVQKLLGAEHD 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS GTE D+ + A + +P +I + VEHPAV + ++L ++G+ V PV
Sbjct: 64 SEILFTSCGTESDSTAILS-ALKAQPERKTVITTVVEHPAVLSLCDYLASEGYTVHKLPV 122
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G + + L+ D+ ++S+M NNE GT+ PI E++ LAD I FH DAVQA+
Sbjct: 123 DKKGRLDLEHYASLLTDDVAVVSVMWANNETGTLFPIEEMA-RLADDAGIMFHTDAVQAV 181
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GK+P++ + L HK H P+GVG++ ++G R PLL GG QE R+ TEN
Sbjct: 182 GKVPIDL-KNSSIHMLSLCGHKLHAPKGVGVLYLRRGTRFRPLLRGGHQERGRRAGTENA 240
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVI-LEELEKHRKVHVFSKVENFAPNILTFGI 299
A I A AL + + +V A++ + L V +N PN
Sbjct: 241 ASIIGLGVAAERALQFMEHENTEVNALRDKLEAGILAVVPHAFVTGDPDNRLPNTANIAF 300
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
+ GE ++ + I S+ SAC+S + + AM++P A VR SL
Sbjct: 301 EYIEGEAILLLLNKVGIAASSGSACTSGSLEPSHVMRAMDIPYTAAHGTVRFSLSRYTTE 360
Query: 360 AEVEQFLTVFRQIYQELEKVS 380
E+++ + I +L VS
Sbjct: 361 EEIDRVIREVPPIVAQLRNVS 381
gi|2827032 (AF008210) NifS [Buchnera aphidicola]
Length = 404
Score = 205 bits (516), Expect = 5e-52
Identities = 134/387 (34%), Positives = 209/387 (53%), Gaps = 15/387 (3%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVAT--KIMGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D +ATT V V + + T I GNP+S H G A +++ +R +I+EL+G
Sbjct: 5 IYLDYAATTPVEFKVAKKMMNYLTIDGIFGNPASRSHKFGWEAEEVIDIARNEISELIGS 64
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
DS+EI FTSG TE +N +KG+AF R GNHII S EH +V + +L++ GF V +
Sbjct: 65 DSREIVFTSGATEANNLAIKGIAFFHRKKGNHIITSKTEHKSVLDACRYLESVGFSVTYL 124
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
+G + +++L+K I TIL+SIM VNNE G IQ I IS + I FHVDA Q
Sbjct: 125 TPKNNGIIDLNDLKKNINKNTILVSIMHVNNETGIIQDITNISKICRSH-DIFFHVDATQ 183
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGV-GIVVAKKGK-RLTPLLHGGGQEHNWRST 236
++GKI + VD SAHK +GP+G+ G+ V +K + RL+ L HGGG E R+
Sbjct: 184 SVGKIAINL-KNLFVDLMSFSAHKIYGPKGIGGLYVRRKPRVRLSALSHGGGHERGMRAG 242
Query: 237 T---ENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPN 293
T + G+ + K R ++DD +R + ++ +V++ S ++ AP+
Sbjct: 243 TLPVHQIVGMGESFKLARKKINDDFIHLTNLR---NDLWNGIKNIEEVYLNSDLKQGAPH 299
Query: 294 ILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISL 353
IL + GE ++ A + ++ IS+ SAC+S + L A+ + +LA S++R S+
Sbjct: 300 ILNVSFNYIEGESLIMALK--DLAISSGSACTSSSLEPSYVLRALGIKDELAHSSIRFSI 357
Query: 354 DSTNNMAEVEQFLTVFRQIYQELEKVS 380
E++ + + L +S
Sbjct: 358 GRFTTKEEIQHTVKSVHKSIHRLRALS 384
sp|P05341|NIFS_AZOVI NIFS PROTEIN >gi|420859|pir||S29757 nifS protein - Azotobacter
vinelandii >gi|142361 (M20568) nifS protein [Azotobacter
vinelandii]
Length = 402
Score = 204 bits (514), Expect = 9e-52
Identities = 126/381 (33%), Positives = 194/381 (50%), Gaps = 5/381 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT V+ +++ T+ GNPSSLH G L+ +R+ + +LLG +
Sbjct: 4 VYLDNNATTRVDDEIVQAMLPFFTEQFGNPSSLHSFGNQVGMALKKARQSVQKLLGAEHD 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS GTE D+ + A + +P +I + VEHPAV + ++L ++G+ V PV
Sbjct: 64 SEILFTSCGTESDSTAILS-ALKAQPERKTVITTVVEHPAVLSLCDYLASEGYTVHKLPV 122
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G + + L+ D+ ++S+M NNE GT+ PI E++ LAD I FH DAVQA+
Sbjct: 123 DKKGRLDLEHYASLLTDDVAVVSVMWANNETGTLFPIEEMA-RLADDAGIMFHTDAVQAV 181
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GK+P++ + L HK H P+GVG++ ++G R PLL GG QE R+ TEN
Sbjct: 182 GKVPIDL-KNSSIHMLSLCGHKLHAPKGVGVLYLRRGTRFRPLLRGGHQERGRRAGTENA 240
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVI-LEELEKHRKVHVFSKVENFAPNILTFGI 299
A I A AL + + +V A++ + L V +N PN
Sbjct: 241 ASIIGLGVAAERALQFMEHENTEVNALRDKLEAGILAVVPHAFVTGDPDNRLPNTANIAF 300
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
+ GE ++ + I S+ SAC+S + + AM++P A VR SL
Sbjct: 301 EYIEGEAILLLLNKVGIAASSGSACTSGSLEPSHVMRAMDIPYTAAHGTVRFSLSRYTTE 360
Query: 360 AEVEQFLTVFRQIYQELEKVS 380
E+++ + I +L VS
Sbjct: 361 EEIDRVIREVPPIVAQLRNVS 381
sp|P87187|SPL1_CANMA TRNA SPLICING PROTEIN SPL1 >gi|2121288 (AF000115) tRNA splicing
protein [Candida maltosa]
Length = 484
Score = 203 bits (511), Expect = 2e-51
Identities = 126/385 (32%), Positives = 201/385 (51%), Gaps = 11/385 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D ATT V+P VL + T + GNP SS H G + +E +R IA+++ D
Sbjct: 85 IYLDVQATTPVDPRVLDKMLEFYTGLYGNPHSSTHAYGWETDKEVEKARGYIADVINADP 144
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N +KGV + HII + EH V ++A ++ +GF++ + PV
Sbjct: 145 KEIIFTSGATETNNMAIKGVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFDITYLPV 204
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ +G + + +L+K IR +T+L+S+MAVNNE+G IQP+ EI + + I FH DA QA
Sbjct: 205 NSEGLINLDDLKKAIRKDTVLVSVMAVNNEIGVIQPLKEIGQICREN-KIFFHTDAAQAY 263
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKIP++ +D +S+HK +GP+G+G ++ RL P++ GGGQE RS T
Sbjct: 264 GKIPIDV-NEMNIDLLSISSHKIYGPKGIGACYVRRRPRVRLDPIITGGGQERGLRSGTL 322
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFA---PNIL 295
+A +A RL + F ++ + + + L F+ N P +
Sbjct: 323 APPLVAGFGEAARLMKQESAFDKKHIEKLSTKLKNGLLSIPSTQ-FNGCNNPTYQYPGCV 381
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
+ GE ++ A + +I +S+ SAC+S + L A+ LA S++R +
Sbjct: 382 NVSFAYIEGESLLMALK--DIALSSGSACTSASLEPSYVLHALGADDALAHSSIRFGIGR 439
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
AEV+ + + L K+S
Sbjct: 440 FTTEAEVDYVIQAINERVDFLRKMS 464
sp|Q57337|NIFS_HAEIN NIFS PROTEIN HOMOLOG >gi|1075069|pir||D64064 nitrogen fixation
protein (nifS) homolog - Haemophilus influenzae (strain
Rd KW20) >gi|1573347 (U32721) nifS protein (nifS)
[Haemophilus influenzae Rd]
Length = 406
Score = 203 bits (510), Expect = 3e-51
Identities = 128/385 (33%), Positives = 206/385 (53%), Gaps = 11/385 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVAT--KIMGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D +AT V+ V + T GNP+S H G A ++ +R QIA+L+G
Sbjct: 7 IYLDYAATCPVDERVAKKMMAFLTIDGTFGNPASRSHKFGWQAEEAVDIARNQIADLIGA 66
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
DS+EI FTSG TE DN +KG A + G HII EH AV +T L+ +GFEV +
Sbjct: 67 DSREIVFTSGATESDNLAIKGAAHFYQTKGKHIITCKTEHKAVLDTCRQLEREGFEVTYL 126
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
+ DG + + + + +R +TIL SIM NNE+G +Q I I +L TI FHVDA Q
Sbjct: 127 SPEADGLIDLEKFKAALRPDTILASIMHANNEIGVLQDIKAIGELCRANKTI-FHVDATQ 185
Query: 179 AIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRS 235
++GK+ + L E VD +S+HK +GP+GVG + ++ RL ++HGGG E RS
Sbjct: 186 SVGKVEIN--LEELAVDLMSMSSHKLYGPKGVGALYVRRKPRVRLEAIIHGGGHERGMRS 243
Query: 236 TTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNIL 295
T + I +A R+A ++ + +++A++ + L+ + +V +E+ + L
Sbjct: 244 GTLPVHQIVGMGEAYRIAKEEMASEMPRLKALRDRLYNGLKDIEETYVNGSMEHRLDSNL 303
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
V GE ++ A +I +S+ SAC+S + L A+ + +LA S++R +L
Sbjct: 304 NISFNYVEGESLMMAL--RDIAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFTLGR 361
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
E++ + + + ++L +S
Sbjct: 362 YTTEEEIDYTINLMKGAVEKLRALS 386
ref|NP_009912.1|NFS1| NifS-like protein; Nfs1p >gi|128151|sp|P25374|SPL1_YEAST TRNA
SPLICING PROTEIN SPL1 (NIFS-LIKE 54.5 KD PROTEIN)
>gi|83348|pir||S19343 nifS protein homolog SPL1 - yeast
(Saccharomyces cerevisiae) >gi|172038 (M98808) nitrogen
fixation-like protein [Saccharomyces cerevisiae]
>gi|1907129|emb|CAA42344| (X59720) YCL017c, len:497
[Saccharomyces cerevisiae]
Length = 497
Score = 202 bits (508), Expect = 5e-51
Identities = 127/365 (34%), Positives = 188/365 (50%), Gaps = 7/365 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D ATT +P VL T T + GNP S+ H G +E +R +A+++ D
Sbjct: 100 IYLDMQATTPTDPRVLDTMLKFYTGLYGNPHSNTHSYGWETNTAVENARAYVAKMINADP 159
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N +LKGV + HII + EH V A + +GFEV F V
Sbjct: 160 KEIIFTSGATESNNMVLKGVPRFYKKTKKHIITTRTEHKCVLEAARAMMKEGFEVTFLNV 219
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G + + ELE IR +T L+S+MAVNNE+G IQPI EI + K I FH DA QA
Sbjct: 220 DDQGLIDLKELEDAIRPDTCLVSVMAVNNEIGVIQPIKEIG-AICRKNKIYFHTDAAQAY 278
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKI ++ +D +S+HK +GP+G+G + ++ RL PLL GGGQE RS T
Sbjct: 279 GKIHIDV-NEMNIDLLSISSHKIYGPKGIGAIYVRRRPRVRLEPLLSGGGQERGLRSGTL 337
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
+A +A RL + D + ++ + +++ L + ++ P +
Sbjct: 338 APPLVAGFGEAARLMKKEFDNDQAHIKRLSDKLVKGLLSAEHTTLNGSPDHRYPGCVNVS 397
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
V GE ++ A +I +S+ SAC+S + L A+ LA S++R + +
Sbjct: 398 FAYVEGESLLMAL--RDIALSSGSACTSASLEPSYVLHALGKDDALAHSSIRFGIGRFST 455
Query: 359 MAEVE 363
EV+
Sbjct: 456 EEEVD 460
sp|P05344|NIFS_KLEPN NIFS PROTEIN >gi|479600|pir||S34847 nifS protein - Klebsiella
pneumoniae >gi|43880|emb|CAA31118| (X12600) nifS gene
product (AA 1 - 397) [Klebsiella pneumoniae]
Length = 397
Score = 199 bits (502), Expect = 2e-50
Identities = 129/383 (33%), Positives = 185/383 (47%), Gaps = 13/383 (3%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT ++PMVL T GNPSS+H G A LE + +Q A LLG +
Sbjct: 4 VYLDNNATTRLDPMVLEAMMPFLTDFYGNPSSIHDFGIPAQAALERAHQQAAALLGAEYP 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS + A P II S VEHPA E L+ QG+ + V
Sbjct: 64 SEIIFTSWPRATP----RHAAIALLPERREIITSVVEHPATLAACEHLERQGYRIHRIAV 119
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D +G + +++ + L+S+M NNE G + PIGE+++L ++ + FH DAVQ +
Sbjct: 120 DSEGALDMAQFRAALSPRVALVSVMWANNETGVLFPIGEMAELAHEQGAL-FHCDAVQVV 178
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIP+ T R+D SAHKFHGP+GVG + ++G R PLL GG QE+ R+ TEN+
Sbjct: 179 GKIPIAVGQT-RIDMLSCSAHKFHGPKGVGCLYLRRGTRFRPLLRGGHQEYGRRAGTENI 237
Query: 241 AGIAATSKALRLA---LDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
GI A LA L Q ++ +L + V V + P +
Sbjct: 238 CGIVGMGAACELANIHLPGMTHIGQLRNRLEHRLLASVP---SVMVMGGGQPRVPGTVNL 294
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
+ GE ++ Q I S+ SAC+S + + AMN+P A +R SL
Sbjct: 295 AFEFIEGEAILLLLNQAGIAASSGSACTSGSLEPSHVMRAMNIPYTAAHGTIRFSLSRYT 354
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
E++ + I L +S
Sbjct: 355 REKEIDYVVATLPPIIDRLRALS 377
emb|CAA16110.1| (AL021287) hypothetical protein Rv3025c [Mycobacterium
tuberculosis]
Length = 393
Score = 199 bits (501), Expect = 3e-50
Identities = 127/384 (33%), Positives = 210/384 (54%), Gaps = 27/384 (7%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M Y D++ATT ++P + V I GN SSLH G +A R +E +R IA+ LG
Sbjct: 1 MAYLDHAATTPMHPAAIEAMAAVQRTI-GNASSLHTSGRSARRRIEEARELIADKLGARP 59
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKR---PYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVD 116
E+ FT+GGTE DN +KG+ + +R P+ I+ + VEH AV ++ WL + +G V
Sbjct: 60 SEVIFTAGGTESDNLAVKGIYWARRDAEPHRRRIVTTEVEHHAVLDSVNWLVEHEGAHVT 119
Query: 117 FAPVDGDGFVIVSELEKLIR--DETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
+ P DG V + L + ++ D+ L+S+M NNEVGTI PI E+S ++A + + H
Sbjct: 120 WLPTAADGSVSATALREALQSHDDVALVSVMWANNEVGTILPIAEMS-VVAMEFGVPMHS 178
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWR 234
DA+QA+G++PL+ + +V + HKF GP GVG ++ ++ PL+HGGGQE + R
Sbjct: 179 DAIQAVGQLPLDFGASGLSAMSV-AGHKFGGPPGVGALLLRRDVTCVPLMHGGGQERDIR 237
Query: 235 STTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPN- 293
S T ++A + A ++A+D + ++R ++ ++E V +++++ N
Sbjct: 238 SGTPDVASAVGMATAAQIAVDGLEENSARLRLLRDRLVE--------GVLAEIDDVCLNG 289
Query: 294 ---------ILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKL 344
F RG G+ ++ + + I ST SAC++ + L+AM V +
Sbjct: 290 ADDPMRLAGNAHFTFRGCEGDALLMLLDANGIECSTGSACTAGVAQPSHVLIAMGVDAAS 349
Query: 345 ATSAVRISLDSTNNMAEVEQFLTV 368
A ++R+SL T+ A+V+ L V
Sbjct: 350 ARGSLRLSLGHTSVEADVDAALEV 373
emb|CAA14939| (AJ235272) NIFS PROTEIN HOMOLOG (spl1) [Rickettsia prowazekii]
Length = 410
Score = 198 bits (499), Expect = 5e-50
Identities = 122/387 (31%), Positives = 204/387 (52%), Gaps = 16/387 (4%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSL-HGLGTTATRLLEASRRQIAELLGVDS 60
IY D +TT ++P V+ T GNP S H G A +E +R +A+++G DS
Sbjct: 12 IYMDYQSTTPIDPRVMEAMLPYFTTKFGNPHSRSHSFGWEAENAVENARSMVAKVIGADS 71
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGN---HIIVSNVEHPAVKNTAEWLKTQGFEVDF 117
+EI FTSG TE +N ++KG+A + YGN HII EH V N L+ +G ++ +
Sbjct: 72 KEIIFTSGATESNNLVIKGIA---KFYGNKKKHIITLVSEHKCVLNACRHLEQEGIKITY 128
Query: 118 APVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
P+ +G + + L+ I D+T+L+S+MAVNNE+G IQP+ EI + ++ + FH D
Sbjct: 129 LPIKSNGIIDLETLKNAITDQTLLVSVMAVNNEIGVIQPLKEIGKICRER-NVFFHSDIA 187
Query: 178 QAIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWR 234
Q GKIP+ + E +D A +S HK +GP+G+G + +K R+TPL++GGGQE R
Sbjct: 188 QGFGKIPIN--VNECNIDLASISGHKIYGPKGIGALYIRKKPRVRVTPLINGGGQERGMR 245
Query: 235 STTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPN 293
S T I A +A ++ + Q V + L + K +V++ +
Sbjct: 246 SGTLPTPLIVGLGIASEIAYNEMEKDTQHVNYLFDRFLNNIHSKISEVYLNGDKDQRYKG 305
Query: 294 ILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISL 353
L GV GE ++ A + ++ +S+ SAC+S + L ++ + +LA +++R +
Sbjct: 306 NLNLSFAGVEGESIILAIK--DLAVSSGSACTSASLEPSYVLRSIGISEELAHTSIRFGI 363
Query: 354 DSTNNMAEVEQFLTVFRQIYQELEKVS 380
E++ + + +L ++S
Sbjct: 364 GRFTTEQEIDYAVNLVCSKIDKLRRLS 390
gi|2983322 (AE000705) FeS cluster formation protein NifS [Aquifex aeolicus]
Length = 406
Score = 198 bits (498), Expect = 7e-50
Identities = 119/385 (30%), Positives = 204/385 (52%), Gaps = 8/385 (2%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD- 59
++Y D+ ATT V VL + GNP+SLH G A + +E +R Q+A+L+ +
Sbjct: 10 VVYVDHIATTPVAEEVLEAMLPYFREKFGNPTSLHSFGQEAKKAVEKAREQVAQLINANI 69
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAP 119
+EI FTSGG E +N +KG+A + G HI+ + +EH ++ + + L+ +G+EV +
Sbjct: 70 PEEIIFTSGGIEANNLAIKGIAKAYQRRGKHIVTTEIEHHSILHPCKTLEREGWEVTYLK 129
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADK-PTISFHVDAVQ 178
D G + ++ + +R++T+L+SI N E+GTIQ I E+ +K P + FH DA
Sbjct: 130 PDKYGLIDPEQVREAVREDTVLVSIGHSNREIGTIQNIKELVKAAKEKNPKVIFHTDAAP 189
Query: 179 AIGKIPLEA--WLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRST 236
++G P++ W VD A +AH +GP+GVG + +KG ++ PL+ GG QE R+
Sbjct: 190 SLGHYPVDVQDW---GVDAASFTAHLMYGPKGVGALWTRKGVKVKPLIEGGTQERGVRAG 246
Query: 237 TENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPNIL 295
TEN+ GI A LA+ + D + +++ + + + L EK + P+ L
Sbjct: 247 TENVPGIVGFGAAAELAMKELDDRMKRLSHYRDKLRKGLEEKVDYIEFTGHPTQRLPHHL 306
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
+ + V GE ++ + I ++ SAC S + L A+ +P +++ +V S
Sbjct: 307 SIIVHFVEGEAMLLRLDLMGIETASGSACVSLALKQSHVLTAIGIPKEVSNGSVVFSFGR 366
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
N +V+ L F ++ L +VS
Sbjct: 367 ENTEEDVDYILEEFPKVINWLREVS 391
gi|2271521 (AF010139) IscS [Azotobacter vinelandii]
Length = 404
Score = 198 bits (498), Expect = 7e-50
Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 9/367 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKI--MGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D SATT V+P V + + T GNP+S H G A +E +RRQ+AEL+
Sbjct: 5 IYLDYSATTPVDPRVAQKMCECLTMEGNFGNPASRSHVFGWKAEEAVENARRQVAELVNA 64
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
D +EI +TSG TE DN +KGVA G HII S +EH AV +T L+ +GFEV +
Sbjct: 65 DPREIVWTSGATESDNLAIKGVAHFNASKGKHIITSKIEHKAVLDTTRQLEREGFEVTYL 124
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
DG + + + +R++TIL+S+M VNNE+GT+ I I +L + + +HVDA Q
Sbjct: 125 EPGEDGLITPAMVAAALREDTILVSVMHVNNEIGTVNDIAAIGELTRSRGVL-YHVDAAQ 183
Query: 179 AIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRST 236
+ GK+ ++ +VD SAHK +GP+G+G + ++ RL +HGGG E RS
Sbjct: 184 STGKVAIDL-ERMKVDLMSFSAHKTYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSG 242
Query: 237 TENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILT 296
T I +A R+A ++ + +++ + E++ +V++ P+ L
Sbjct: 243 TLATHQIVGMGEAFRIAREEMAAESRRIAGLSHRFHEQVSTLEEVYLNGSATARVPHNLN 302
Query: 297 FGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDST 356
V GE ++ + ++ +S+ SAC+S + L A+ +LA S++R +
Sbjct: 303 LSFNYVEGESLIMSL--RDLAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTFGRF 360
Query: 357 NNMAEVE 363
EV+
Sbjct: 361 TTEEEVD 367
gi|2983536 (AE000720) FeS cluster formation protein NifS [Aquifex aeolicus]
Length = 370
Score = 198 bits (497), Expect = 9e-50
Identities = 128/375 (34%), Positives = 200/375 (53%), Gaps = 8/375 (2%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIYFDN+ATT V P V + + A I GNPSS+H LG A +E +R+ IA L V
Sbjct: 1 MIYFDNAATTPVLPEV-KNFLCKALDIYGNPSSVHTLGKFARSEIETARKTIANYLKVKP 59
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+ I F S TEG+N I++ + + GN +++S +EH +VK ++ + E+ V
Sbjct: 60 ENIIFNSCATEGNNTIIRTI-LNNKDRGN-VVLSAIEHKSVKEAIKFWANKSIEIREIKV 117
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ +G + + L LI TIL+ +M V+NE GTIQPI EI+ + +DK + DAVQAI
Sbjct: 118 NKNGVIDLEHLYHLIDSNTILVCVMYVSNEFGTIQPIQEIAKICSDK-GVPLLTDAVQAI 176
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIP+E + + +A S HKFH +G G + PL+ GGGQE+ RS TEN+
Sbjct: 177 GKIPIE---LKNISYATFSGHKFHAIKGSGFLYISDEANYEPLIVGGGQENGKRSGTENV 233
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVILE-ELEKHRKVHVFSKVENFAPNILTFGI 299
GI + +KAL + + + +++++ ++ + LE + K +P+I + +
Sbjct: 234 VGILSLAKALEIIVSNFSRYQEQLKKLRDLFENLLLEALPDAQIVGKDAERSPSISSVIM 293
Query: 300 RGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNM 359
G +V+ + IY ST SAC S + ++ M + A VR S N
Sbjct: 294 PKFFGAEIVNKLSEKGIYCSTGSACLSGEYEPNKHMLKMGFSQEKALRMVRFSFGLLNKE 353
Query: 360 AEVEQFLTVFRQIYQ 374
EV + + ++IY+
Sbjct: 354 EEVIECIERIKEIYR 368
emb|CAB16421| (Z99263) nifS-like protein [Mycobacterium leprae]
Length = 396
Score = 197 bits (496), Expect = 1e-49
Identities = 125/384 (32%), Positives = 207/384 (53%), Gaps = 27/384 (7%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M Y D++ATT ++P + T A +GN SSLH G A R +E SR IA+ L
Sbjct: 1 MAYLDHAATTPMHPAAIEAMT-TALGTVGNASSLHTSGRVARRRIEESRELIADKLAARP 59
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKR---PYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVD 116
E+ FT+GGTE DN +KG+ + +R P I+ + VEH AV ++ WL + +G EV
Sbjct: 60 SEVIFTAGGTESDNLAVKGIYWARRDAQPCHRRIVTTEVEHHAVLDSVNWLVEHEGAEVT 119
Query: 117 FAPVDGDGFVIVSELEKLIR--DETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
+ P DG V L + ++ ++ L+S+M NNEVGT+ P+ E++ + A+ + H
Sbjct: 120 WLPTAADGSVSAFGLREALQQHNDVALVSVMWANNEVGTVMPVVELAAVAAEFG-VPMHS 178
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWR 234
DA+QA+G++P++ ++ +V +AHKF GP GVG ++ ++ PLLHGGGQE + R
Sbjct: 179 DAIQAVGQLPVKFGVSGLSAMSV-AAHKFGGPPGVGALLLRRDISCVPLLHGGGQERDIR 237
Query: 235 STTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFA--- 291
S T +A + + A ++A+D + +++ ++ ++E V + +++ A
Sbjct: 238 SGTPGVASVVGMAAAAQIAVDGLEINSIRLQVLRDRLIE--------GVLATIDDVALNG 289
Query: 292 -------PNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKL 344
P F RG G+V++ + + I ST SAC+S + L+AM
Sbjct: 290 ARDRMRLPGNAHFIFRGCEGDVLLMLLDANGIECSTGSACTSGVPQPSHVLIAMGADPAS 349
Query: 345 ATSAVRISLDSTNNMAEVEQFLTV 368
A ++R+SL + +VE+ L V
Sbjct: 350 ARGSLRLSLGHNSVEVDVEEVLRV 373
emb|CAA16686| (AL021684) pyridoxal-phosphate-dependent aminotransferase - like
protein [Arabidopsis thaliana]
>gi|6686815|emb|CAB64727.1| (AJ243393) nifS-like protein
[Arabidopsis thaliana]
Length = 453
Score = 195 bits (491), Expect = 5e-49
Identities = 124/385 (32%), Positives = 203/385 (52%), Gaps = 12/385 (3%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSS-LHGLGTTATRLLEASRRQIAELLGVDS 60
+Y D ATT ++P V GNP S H G A +E +R Q+A+L+
Sbjct: 55 LYLDMQATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARNQVAKLIEASP 114
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI F SG TE +N +KGV + H+I + EH V ++ L+ +GFEV + PV
Sbjct: 115 KEIVFVSGATEANNMAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPV 174
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
DG V + L + IR +T L+SIMAVNNE+G +QP+ EI ++ + + FH DA QAI
Sbjct: 175 KTDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIG-MICKEHNVPFHTDAAQAI 233
Query: 181 GKIPLEA--WLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRST 236
GKIP++ W V +SAHK +GP+GVG + ++ RL PL++GGGQE RS
Sbjct: 234 GKIPVDVKKW---NVALMSMSAHKIYGPKGVGALYVRRRPRIRLEPLMNGGGQERGLRSG 290
Query: 237 TENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPNIL 295
T I A LA+ + ++ + ++ +++ +L + EK V V +++ L
Sbjct: 291 TGATQQIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDSRYVGNL 350
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
V GE ++ + E+ +S+ SAC+S + L A+ V +A +++R +
Sbjct: 351 NLSFAYVEGESLLMGLK--EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR 408
Query: 356 TNNMAEVEQFLTVFRQIYQELEKVS 380
E+++ + + + ++L ++S
Sbjct: 409 FTTKEEIDKAVELTVKQVEKLREMS 433
ref|NP_035041.1|| nitrogen fixation gene, yeast homolog 1 (S. cerevisiae)
>gi|4138201|emb|CAA10916| (AJ222660) mouse NifS-like
protein [Mus musculus]
Length = 459
Score = 195 bits (490), Expect = 6e-49
Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 8/366 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSS-LHGLGTTATRLLEASRRQIAELLGVDS 60
+Y D ATT ++P VL GNP S H G + +E +R+Q+A L+G D
Sbjct: 61 LYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGADP 120
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N +KGVA R H++ + EH V ++ L+ +GF V + PV
Sbjct: 121 REIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYLPV 180
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
G + + ELE I+ +T L+S+M VNNE+G QPI EI + + + + FH DA QA+
Sbjct: 181 QKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIRQICSSR-KVYFHTDAAQAV 239
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKIPL+ ++D +S HK +GP+GVG + ++ R+ L GGGQE RS T
Sbjct: 240 GKIPLDV-NDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 298
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKH-RKVHVFSKVENFAPNILTF 297
+ A LA + ++ +++ + + +++++ K+ V + + P +
Sbjct: 299 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLVQKIMKNLPDVVMNGDPKQHYPGCINL 358
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
V GE ++ A + ++ +S+ SAC+S + A+ LA S++R +
Sbjct: 359 SFAYVEGESLLMALK--DVALSSGSACTSASLEPSYVFRAIGTDEDLAHSSIRFGIGRFT 416
Query: 358 NMAEVE 363
EV+
Sbjct: 417 TEEEVD 422
pir||S37296 nifS protein - Klebsiella pneumoniae >gi|149344 (M17350)
nifS-encoded protein [Klebsiella pneumoniae]
Length = 397
Score = 194 bits (487), Expect = 1e-48
Identities = 127/383 (33%), Positives = 183/383 (47%), Gaps = 13/383 (3%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT ++PMVL T GNPSS+H G A LE + +Q A LLG +
Sbjct: 4 VYLDNNATTRLDPMVLEAMMPFLTDFYGNPSSIHDFGIPAQAALERAHQQAAALLGAEYP 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS + A P II S VEHPA E L+ QG+ + V
Sbjct: 64 SEIIFTSWPRATP----RHAAIALLPERREIITSVVEHPATLAACEHLERQGYRIHRIAV 119
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D +G + +++ + L+S+M NNE G + PIGE+++L ++ + FH DAVQ +
Sbjct: 120 DSEGALDMAQFRAALSPRVALVSVMWANNETGVLFPIGEMAELAHEQGAL-FHCDAVQVV 178
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIP+ T R+ SAHKFH P+GVG + ++G R PLL GG QE+ R+ TEN+
Sbjct: 179 GKIPIAVGQT-RIHMLSCSAHKFHPPKGVGCLYLRRGTRFRPLLRGGHQEYGRRAGTENI 237
Query: 241 AGIAATSKALRLA---LDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
GI A LA L Q ++ +L + V V + P +
Sbjct: 238 CGIVGMGAACELANIHLPGMTHIGQLRNRLEHRLLASVP---SVMVMGGGQPRVPGTVNL 294
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
+ GE ++ Q I S+ SAC+S + + AMN+P A +R SL
Sbjct: 295 AFEFIEGEAILLLLNQAGIAASSGSACTSGSLEPSHVMRAMNIPYTAAHGTIRFSLSRYT 354
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
E++ + I L +S
Sbjct: 355 REKEIDYVVATLPPIIDRLRALS 377
gb|AAF09798.1|AE001883_4 (AE001883) aminotransferase, class V [Deinococcus radiodurans]
Length = 378
Score = 193 bits (485), Expect = 2e-48
Identities = 123/376 (32%), Positives = 189/376 (49%), Gaps = 11/376 (2%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIY D +AT + P L Y + A + GNP+S+H G A LE R ++A VD
Sbjct: 2 MIYLDYAATHPLTPAALAAYAEAAA-LPGNPASVHAAGQAAREKLEEGRARMAAAFDVDP 60
Query: 61 QEIFFTSGGTEGDNWILKGVAF---EKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDF 117
+ + SGGTEGDN +L G A E+ H++ + EH AV A L G++V +
Sbjct: 61 RTLTLNSGGTEGDNHVLLGAAQAWQERHGSPGHLVTTPTEHSAVLAPARHLAAHGWDVTW 120
Query: 118 APVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
D G +L +RD+T L+SI NNE+GT+QP ++ + A + + +H DAV
Sbjct: 121 LEPDSAGHYSPEQLGAALRDDTALVSIHHANNEIGTVQPTAALAAVAAARG-VPYHTDAV 179
Query: 178 QAIGKIP--LEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRS 235
QA G +P L W V +A SAHK+ GPRGVG + ++G L P+ GGGQE R
Sbjct: 180 QAPGVLPVNLAEW---GVTYATFSAHKWGGPRGVGALYVQRGAELPPVTLGGGQEGGLRP 236
Query: 236 TTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNIL 295
T+N AG A AL A + +R ++ ++ + + + F+ + +P ++
Sbjct: 237 GTQNTAGAYAAGVALTEAAEAQPATFAHLRDLQTAFMDAVREIPGL-TFNHPADGSPKVV 295
Query: 296 TFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDS 355
+ I G GE ++ + + S SACS+ A+ L A+ + A +++R S +
Sbjct: 296 SLTIPGADGEALLMNLDMLGVSASAGSACSAGTMQASHVLTAIGLTEADARASLRFSFGA 355
Query: 356 TNNMAEVEQFLTVFRQ 371
EV+Q RQ
Sbjct: 356 ATTRGEVQQAAAALRQ 371
gi|4185794 (AF097025) cysteine desulfurase [Homo sapiens]
Length = 457
Score = 187 bits (470), Expect = 1e-46
Identities = 116/383 (30%), Positives = 196/383 (50%), Gaps = 8/383 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSS-LHGLGTTATRLLEASRRQIAELLGVDS 60
+Y D ATT ++P VL GNP S H G + +E +R+Q+A L+G D
Sbjct: 59 LYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGADP 118
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N +KGVA R H+I + EH V ++ L+ +GF+V + PV
Sbjct: 119 REIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYLPV 178
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
G + + ELE I+ +T L+S+M VNNE+G QPI EI + + + + FH DA QA+
Sbjct: 179 QKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSR-KVYFHTDAAQAV 237
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKIPL+ ++D +S HK +GP+GVG + ++ R+ L GGGQE RS T
Sbjct: 238 GKIPLDV-NDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKH-RKVHVFSKVENFAPNILTF 297
+ A +A + ++ +++ + + +++ + K V + ++ P +
Sbjct: 297 PTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINL 356
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
V GE ++ A + ++ +S+ S+CS + L + + + S++R + +
Sbjct: 357 SFAYVEGESLLMALK--DVALSSGSSCSLHPWSPLMCLEQLALMRIYSHSSIRFGIGAFT 414
Query: 358 NMAEVEQFLTVFRQIYQELEKVS 380
EV+ + Q L ++S
Sbjct: 415 TEEEVDYTVEKCIQHVNRLREMS 437
emb|CAA20767.1| (AL031536) trna splicing protein [Schizosaccharomyces pombe]
Length = 498
Score = 187 bits (470), Expect = 1e-46
Identities = 120/375 (32%), Positives = 192/375 (51%), Gaps = 8/375 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSS-LHGLGTTATRLLEASRRQIAELLGVDS 60
IY D AT+ ++ VL + T I GNP S H G A + +E +R++IA ++ D
Sbjct: 101 IYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINADP 160
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG TE +N ILKGVA + H++ EH V ++ L+ +GFEV F PV
Sbjct: 161 REIIFTSGATESNNAILKGVARFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEVTFLPV 220
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+G + + EL IR +T+ +S+MAVNNE+G QP+ EI + K + FH DA Q
Sbjct: 221 QTNGLINLDELRDAIRPDTVCVSVMAVNNEIGVCQPLEEIGKICRQK-KVFFHSDAAQGY 279
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTE 238
GKI ++ +D +SAHK +GP+G+G ++ RL PL+ GGGQE RS T
Sbjct: 280 GKIDIDV-NRMNIDLMSISAHKIYGPKGIGAAYVRRRPRVRLEPLISGGGQERGLRSGTL 338
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFG 298
+ + A R+ ++ + + + Q +++ L + ++ P +
Sbjct: 339 APSQVVGFGTAARICKEEMKYDYAHISKLSQRLIDGLLAIPYTSLNGDPKSRYPGCVNIS 398
Query: 299 IRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNN 358
V GE ++ + I +S+ SAC+S + L A+ + A S++R +
Sbjct: 399 FNYVEGESLLMGLK--NIALSSGSACTSASLEPSYVLRAIGQSDENAHSSIRFGIGRFTT 456
Query: 359 MAEVEQFL-TVFRQI 372
AE++ + V RQ+
Sbjct: 457 EAEIDYAIENVSRQV 471
sp|Q52069|NIFS_ENTAG NIFS PROTEIN >gi|1480127|emb|CAA68020| (X99694) nifS [Enterobacter
agglomerans]
Length = 401
Score = 184 bits (462), Expect = 1e-45
Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 22/389 (5%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD-S 60
+Y DN+ATT ++PMVL GNPSS+H G LE +R Q+A LLG +
Sbjct: 4 VYLDNNATTRIDPMVLEAMMPYLRDYYGNPSSIHDFGGPCRAGLECAREQVASLLGAAYT 63
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS TE + + A P II + VEHPA E L+ QG+ + V
Sbjct: 64 SEIIFTSCATEATSTAIYS-AIALAPERREIITTAVEHPATLAVCEHLERQGYMIHRIGV 122
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+G + + + + L+++M NNE G + P+ E++ A + I FH DAVQA+
Sbjct: 123 SEEGALDTAHYYDALSENVALVTMMWANNETGVLFPVSEMATA-AHERGILFHCDAVQAV 181
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
GKIP+ T+ +D SAHK HGP+G G + ++ R PL+ GG QE R+ TEN+
Sbjct: 182 GKIPISLRATD-IDMLSCSAHKIHGPKGCGCLYLRRNTRFRPLVRGGHQERGRRAGTENI 240
Query: 241 AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENF---------A 291
AGI A LA V ++E+ + + + + +
Sbjct: 241 AGIVGMGAACELA---------DVHMPMMASVQEMRDRLETGLLTTIPHTLLMGANQPRT 291
Query: 292 PNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRI 351
PN + + GE ++ I S+ SAC+S + + AMN+P A ++R
Sbjct: 292 PNTVNIAFEYIEGEAILLLLNHCGIAASSGSACTSGSLEPSHVMRAMNIPYTAAHGSIRF 351
Query: 352 SLDSTNNMAEVEQFLTVFRQIYQELEKVS 380
SL E+E + I L +S
Sbjct: 352 SLSRFTREREIEWAIEQMPDIVARLRTLS 380
dbj|BAA16678| (D90899) NifS protein [Synechocystis sp.]
Length = 391
Score = 183 bits (460), Expect = 2e-45
Identities = 127/383 (33%), Positives = 191/383 (49%), Gaps = 11/383 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
IY D SATT V + GNP+SLH G A LE +R Q+A+LL
Sbjct: 3 IYLDYSATTPPRQEVKAAVQSFLDQSWGNPASLHHWGNRAALALETARLQVAQLLNASHP 62
Query: 62 E-IFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+ I FTSGGTE ++ + GV P H+I+S VEH A+ WL+ QG++V V
Sbjct: 63 DSIVFTSGGTEANHLAIFGVT-RNYPSPQHLIISTVEHSAIAEPVRWLENQGWQVTRLGV 121
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ G V ELE+ I+ T+LIS++ +EVGT+QPI E+ +A + I FH DAVQ
Sbjct: 122 NAQGRVNPLELEQAIQSNTVLISVIYGQSEVGTLQPIEELG-RIARQRHIPFHTDAVQVA 180
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENL 240
G+ P++ VD LS+HK +G +G G + + PLL GGGQE RS T L
Sbjct: 181 GRCPVDVKRLP-VDLLSLSSHKLYGIQGAGALYIHPDLAIGPLLMGGGQEQGLRSGTPPL 239
Query: 241 AGIAATSKALRLA---LDDDDFKRQKVRAMKQVILEELE----KHRKVHVFSKVENFAPN 293
I A +LA L ++ + Q +R +L + E +++ +F
Sbjct: 240 PAIVGLGIAAKLAHHELAEEMTRLQTLRDRCFDLLADCEFLTPTGDRLYRLPHHVSFVVQ 299
Query: 294 ILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISL 353
G+ G+ +V A + I IS +AC+S K + L+AM + A + +R++
Sbjct: 300 SRRHCTAGLTGKQLVRALNREGIAISAGAACNSGKLNPSPVLLAMGYQEQQALAGIRLTF 359
Query: 354 DSTNNMAEVEQFLTVFRQIYQEL 376
MA++E +Q++ +L
Sbjct: 360 GRETTMADIETTARTIKQVFAQL 382
emb|CAA14940| (AJ235272) NIFS PROTEIN HOMOLOG (spl1) [Rickettsia prowazekii]
Length = 376
Score = 183 bits (459), Expect = 3e-45
Identities = 122/380 (32%), Positives = 190/380 (49%), Gaps = 19/380 (5%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIY D++ATT ++P V + K + NPSS H G A ++E +R QIA LG+
Sbjct: 1 MIYLDHNATTFIDPRVKEYIISLMDKEL-NPSSAHTSGRFAKNIIETARSQIATSLGITM 59
Query: 61 QE---IFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDF 117
I FTS GTE +N I+K Y I +S +EH ++ N + +
Sbjct: 60 SREYNITFTSSGTESNNLIMKNF------YDGDIFISAIEHLSIYNHINYAPN----IKI 109
Query: 118 APVDGDGFVIVSELEKLIRDETI---LISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
V+ G V + LE L+ L+S+M NNE G +Q I IS + K FH
Sbjct: 110 IRVNKQGLVDLEHLEDLLSQSNASKKLVSVMIANNENGVLQDIAAISKI-TKKYNAKFHS 168
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWR 234
D VQ+ GKI L +DFA +S HK G G G +++ +L P++ GGGQE + R
Sbjct: 169 DLVQSFGKISLNI-KELGLDFATISGHKIGGGHGCGALISNSNFQLIPIIIGGGQEKSVR 227
Query: 235 STTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNI 294
S TEN+ IA A D K+R +++ + ++L+++ V++ S N
Sbjct: 228 SGTENVLAIAGFGLAAEFRRKDISKNYIKIRYLQERLEQKLKEYSNVNIISNNVARLANT 287
Query: 295 LTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLD 354
+ +V + F+ I +S+ SACSS K + + L M + + A S++RISL
Sbjct: 288 TLITVDNTDAQVKLIGFDLRNICVSSGSACSSGKISKSHVLTNMGIREEEARSSIRISLS 347
Query: 355 STNNMAEVEQFLTVFRQIYQ 374
TN +++++ F+ F +IY+
Sbjct: 348 HTNTISDIKAFIKAFEEIYE 367
gb|AAD17272| (AF119361) NifS [Frankia sp. EuIK1]
Length = 419
Score = 180 bits (451), Expect = 2e-44
Identities = 133/380 (35%), Positives = 187/380 (49%), Gaps = 27/380 (7%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIY D++ATT V+P V+ + T+ NP+S H G ATR++E +RR++A L G
Sbjct: 1 MIYLDHNATTPVDPRVVEVMLPLFTERFANPASKHAPGQEATRIVERARREVASLAGARP 60
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEV----- 115
+EI FTSG TE N + GV P I+V EHPAV A+ + G V
Sbjct: 61 REIVFTSGATEAANLAIGGVLATAEPGRRRILVGATEHPAVLGAADAAVSAGSAVSADGT 120
Query: 116 ---DFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTI---QPIGEISDLLADKPT 169
+ V DG V V +L + + + L+++MA NNE G + +P+ E A
Sbjct: 121 TAAERIAVHPDGTVDVDDLRRRLGPDVALVAVMAANNETGAVNDPRPLVE----AARSAG 176
Query: 170 ISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG 227
D QA+G++P+E T VD AV SAHK +GP+GVG ++A K RL P +HGG
Sbjct: 177 RCCCADVTQALGRVPVEFERT-GVDLAVSSAHKLYGPKGVGALIASKDAWSRLAPRVHGG 235
Query: 228 GQEHNWRSTTENLAGIAATSKALRLALDD--DDFKRQKVRAMKQVILEELEKH---RKVH 282
GQE R+ T N AGIA A R+A + DD RQ RA+ ++ E L K V
Sbjct: 236 GQERGLRAGTLNTAGIAGFGAAARIAAESMADDGTRQ--RALVALLTELLVKRLGPGAVE 293
Query: 283 VFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPS 342
+ V PN + G + V + + IS SACS + + L AM +
Sbjct: 294 LNGPVRARLPNTVNLRFVGAGADEVQACAPR--VAISAGSACSGGGDEPSHVLRAMGRTA 351
Query: 343 KLATSAVRISLDSTNNMAEV 362
A ++R SL E+
Sbjct: 352 TEARESLRFSLGRATTTEEI 371
emb|CAA20189| (AL031184) putative pyridoxal-phosphate-dependent aminotransferase
[Streptomyces coelicolor]
Length = 389
Score = 178 bits (446), Expect = 9e-44
Identities = 120/373 (32%), Positives = 190/373 (50%), Gaps = 13/373 (3%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M Y D++ATT + P + T GN SSLH G A R +E +R +AE LG
Sbjct: 1 MAYLDHAATTPMLPEAVEALT-AHLSATGNASSLHASGRRARRTVEEARETLAEALGARP 59
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKR---PYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVD 116
E+ TSGGTE DN +KG+ + +R P ++ S VEH AV + WL + +G V+
Sbjct: 60 SEVVLTSGGTEADNLAVKGLYWARRDADPARTRVLASPVEHHAVLDAVHWLGEHEGATVE 119
Query: 117 FAPVDGDGFVIVSEL-EKLIRD--ETILISIMAVNNEVGTIQPIGEISDLLADKPTISFH 173
+ PVD G V L E + RD L ++M NNE+GTI P+ E++D+ A+ + H
Sbjct: 120 YLPVDAQGRVHPEALREAIARDPGNVALATVMWANNEIGTIMPVRELADVAAEF-DVPLH 178
Query: 174 VDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNW 233
DAVQA G++P+ + + +S HK GP G+G ++ + P+LHGGGQE +
Sbjct: 179 ADAVQAFGQLPV-GFADSGLAAMTVSGHKIGGPYGIGALLLGRDYTPVPVLHGGGQERHV 237
Query: 234 RSTTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFS---KVENF 290
RS T ++ +A+ + A RLA + ++ +++ A++ +++ + +
Sbjct: 238 RSGTLDVPAVASFAVAGRLAAEQREWFAREIGALRDDLVDAVRTAVPDAILGGDPSPGGR 297
Query: 291 APNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVR 350
P F G G+ ++ + I ST SAC++ + L+A LA +R
Sbjct: 298 LPANAHFTFPGCEGDSLLLLLDAQGIECSTGSACTAGVAQPSHVLLATGTDPDLARGTLR 357
Query: 351 ISLDSTNNMAEVE 363
SL T+ A+VE
Sbjct: 358 FSLGHTSTEADVE 370
sp|Q07177|NIFS_RHOCA NIFS PROTEIN >gi|486694|pir||S34816 nifS protein - Rhodobacter
capsulatus >gi|297918|emb|CAA48487| (X68444) nifS
[Rhodobacter capsulatus]
Length = 384
Score = 178 bits (446), Expect = 9e-44
Identities = 135/385 (35%), Positives = 184/385 (47%), Gaps = 17/385 (4%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS- 60
IY DN+ATT V P V+ T+ GN SS HG G A L +R +A L+G S
Sbjct: 6 IYLDNNATTRVFPEVVAAMLPYFTEHFGNASSGHGFGAQAGLGLRKARLAVAALIGAASE 65
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVDFAP 119
QEI FTSGGTE + ++ A + II+S VEHPA+ A L KT+G V P
Sbjct: 66 QEILFTSGGTEANTTAIRS-ALAVQDGRREIIISAVEHPAILMLAADLEKTEGVRVHRIP 124
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQA 179
VD G + ++ + D + SIM NN P+ +++ A FH DAVQA
Sbjct: 125 VDHLGRLDLAAYRAALSDRVAVASIMWANNRYDL--PVPQLA-AEAHAAGALFHTDAVQA 181
Query: 180 IGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTEN 239
+GK+P+ TE +D LS HKFHGP+GVG + +KG PLL GG QE R+ TEN
Sbjct: 182 VGKLPMSLADTE-IDMLSLSGHKFHGPKGVGALYLRKGVAFRPLLRGGKQERGRRAGTEN 240
Query: 240 L-----AGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNI 294
+ G+AA A R+A D ++ ++ + + N N
Sbjct: 241 VPALVGMGLAAEIVAARMAAD-----LSRIATLRDWLESGILALGGCQRLGDPANRLANT 295
Query: 295 LTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLD 354
T + E V+ + I IST SAC+S + AM VP A VR SL
Sbjct: 296 CTLAFDRIDSEAVLTKLARAGIAISTGSACASGAMEPSHVTRAMAVPFTAAHGVVRFSLS 355
Query: 355 STNNMAEVEQFLTVFRQIYQELEKV 379
+ AE+ + L + +I EL V
Sbjct: 356 ADTTAAELSRVLAILPEILAELRPV 380
sp|P38033|NIFS_BACSU NIFS PROTEIN HOMOLOG >gi|421514|pir||B47071 nitrogenase
biosynthesis protein NifS - Bacillus subtilis >gi|143241
(M98822) homologous to the nifS gene products of other
bacteria [Bacillus subtilis] >gi|2635253|emb|CAB14748|
(Z99118) nifS [Bacillus subtilis]
Length = 395
Score = 177 bits (445), Expect = 1e-43
Identities = 125/384 (32%), Positives = 195/384 (50%), Gaps = 17/384 (4%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
MIY D +ATT + L Y ++ + GN SSLH G A +LE R +IA ++G ++
Sbjct: 1 MIYLDYAATTPICEEALTVYQKLSMDMYGNASSLHDAGGKAKHILEYCREKIANIIGGEA 60
Query: 61 QEIFFTSGGTEGD----NWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVD 116
I+FTSGGTE + +L G+ KR H I + +EH ++ N A +L+ QG++V
Sbjct: 61 SGIYFTSGGTESNFLAIQSLLNGLPKTKR----HFITTAMEHQSIHNCAAFLEQQGYDVT 116
Query: 117 FAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
+ G + L IR ET L+SI N+E G IQPI +S L +K I H DA
Sbjct: 117 VIEPNEYGLITEEILLTHIRPETGLVSIQHANSETGIIQPIQHLSSYLHNK-GILLHCDA 175
Query: 177 VQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRST 236
VQ GKIP+ VD +S+HK HGP+GVG V + P+ E+ +R+
Sbjct: 176 VQTFGKIPINT-KNLGVDALSMSSHKIHGPKGVGAVYIRPDVPWKPVYPLTTHEYGFRAG 234
Query: 237 TENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHV-----FSKVENFA 291
T N+ GI A + A L + + + + + A++ L+++ + R + V SK E
Sbjct: 235 TVNVPGIGAFTAAAELIVSEMEKQISRNEALRTYFLDQI-RIRSLPVTLAADTSKAE-CL 292
Query: 292 PNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRI 351
P+I+ G+ V+ + I IST SACS+ + + T+ A+ + A +RI
Sbjct: 293 PHIIGCFFHSFEGQYVMLECNRSNICISTGSACSAGYHGPSETMKALRKTEQEALQFIRI 352
Query: 352 SLDSTNNMAEVEQFLTVFRQIYQE 375
S ++EQ L F ++++
Sbjct: 353 SFGRHTTAEQLEQLLHTFTVLWEQ 376
sp|P23120|NIFS_AZOCH NIFS PROTEIN >gi|280008|pir||B43706 nifS protein - Azotobacter
chroococcum >gi|142388 (M60090) nifS [Azotobacter
chroococcum]
Length = 396
Score = 173 bits (435), Expect = 2e-42
Identities = 117/380 (30%), Positives = 186/380 (48%), Gaps = 9/380 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
+Y DN+ATT V+ ++ T+ GNPSSLH G L+ +R+Q A +LG
Sbjct: 4 VYLDNNATTRVDDEIVEAMLPFFTEQFGNPSSLHSFGNQVGLALKRARQQRAGVLGEHDS 63
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVD 121
EI FTS GTE D+ IL ++ + +I + VEHPAV + ++L ++G+ V PVD
Sbjct: 64 EIIFTSCGTESDHAILSALSPAR---AQDLITTVVEHPAVLSLCDYLASEGYTVHKLPVD 120
Query: 122 GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIG 181
G + + L+ D+ ++S+M NNE GT+ P+ E++ +AD+ I FH DAVQA+
Sbjct: 121 KKGRLDLDHYASLLNDDVAVVSVMWANNETGTLFPVEEMA-RMADEAGIMFHTDAVQAVR 179
Query: 182 KIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTENLA 241
K+P++ + LS HK H +GVG++ ++G R G + TEN A
Sbjct: 180 KLPIDL-KNSSIHMLSLSGHKLH-RKGVGVLYLRRGTRFRRCCR--GHQERPAGGTENAA 235
Query: 242 GIAATSKALRLALDDDDFKRQKVRAMKQVI-LEELEKHRKVHVFSKVENFAPNILTFGIR 300
I A A AL + + +V+ ++ + L V +N PN
Sbjct: 236 SIIAMGWAAERALAFMEHENTEVKRLRDKLEAGILAVVPHAFVTGDPDNRLPNTANIAFE 295
Query: 301 GVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMA 360
+ GE ++ + I S+ SAC+S + + AM++P A VR SL
Sbjct: 296 YIEGEAILLLLNKVGIAASSGSACTSGSLEPSHVMRAMDIPYTAAHGTVRFSLSRYTTEE 355
Query: 361 EVEQFLTVFRQIYQELEKVS 380
E+++ + I +L VS
Sbjct: 356 EIDRVIREVPPIVAQLRNVS 375
gb|AAC16992.1| (AF067211) similar to aminotransferases class-V; Pfam domain:
PF00266 (aminotran_5), Score=389.1, E-value=1.4e-113,
N=1 [Caenorhabditis elegans]
Length = 446
Score = 167 bits (418), Expect = 2e-40
Identities = 121/401 (30%), Positives = 186/401 (46%), Gaps = 43/401 (10%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSS-LHGLGTTATRLLEASRRQIAELLGVDS 60
IY D AT ++P V+ GNP S H G A +E +R +A L+ D
Sbjct: 13 IYLDVQATAPMDPRVVDAMLPYMINDFGNPHSRTHSYGWKAEEGVEQAREHVANLIKADP 72
Query: 61 QEIFFTSGGTEGDNWILKGVA-FEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAP 119
++I FTSG TE +N +KGVA F K+ NHII EH V ++ +L+ +GF+V + P
Sbjct: 73 RDIIFTSGATESNNLAIKGVAKFRKQSGKNHIITLQTEHKCVLDSCRYLENEGFKVTYLP 132
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQP----------------------- 156
VD G V + +L + I ET L+SIM VNNE+G +QP
Sbjct: 133 VDKGGMVDMEQLTQSITAETCLVSIMFVNNEIGVMQPIKQIGLFFFSNQRNTPKKKLNLT 192
Query: 157 -----------IGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHG 205
I E S+L K + FH DA QA GK+P++ ++D +SAHK +G
Sbjct: 193 KISKFFSFDSLIAEFSELCRSK-GVYFHTDAAQATGKVPIDV-NEMKIDLMSISAHKIYG 250
Query: 206 PRGVGIVVAKKGK--RLTPLLHGGGQEHNWRSTTENLAGIAATSKALRLALDDDDFKRQK 263
P+G G + ++ R+ + GGGQE RS T +A ++A + +
Sbjct: 251 PKGAGALYVRRRPRVRIEAQMSGGGQERGLRSGTVAAPLCIGLGEAAKIADKEMAMDKAH 310
Query: 264 VRAMKQVILEEL-EKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTS 322
V + Q+++ + +K + + P + V GE ++ A + I +S+ S
Sbjct: 311 VERLSQMLINGISDKLPHIIRNGDARHAYPGCVNLSFAYVEGESLLMALK--SIALSSGS 368
Query: 323 ACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVE 363
AC+S + L A+ LA S++R L EV+
Sbjct: 369 ACTSASLEPSYVLRAIGSEEDLAHSSIRFGLGRFTTDEEVK 409
sp|P70727|NIFS_AZOBR NIFS PROTEIN >gi|1597739 (U26427) nifS [Azospirillum brasilense]
Length = 398
Score = 161 bits (404), Expect = 7e-39
Identities = 121/371 (32%), Positives = 172/371 (45%), Gaps = 9/371 (2%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTA--TRLLEASRRQIAELLGVD 59
IY DN+ATT V+P VL + T+ GNPSS+HG G + A A D
Sbjct: 6 IYLDNNATTRVDPDVLAEMLPLFTEQFGNPSSMHGFGAAVGGQDRMGAQAGAGAARAAHD 65
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWL-KTQGFEVDFA 118
S EI FTSGGTE DN + E P I+ S VEHPAV ++L K +G+ V
Sbjct: 66 S-EIVFTSGGTESDNTAILST-LEAYPKKKSIVTSVVEHPAVLALCDYLEKKRGYTVHRI 123
Query: 119 PVDGDGFVIVSELEKL-IRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
VD G + + ++ + + ++SIM NNE GTI PI E++ L + FH AV
Sbjct: 124 GVDNRGNLDLDAYKRCALGPDVAIVSIMWANNETGTIFPIEELAQLAKAAGAV-FHT-AV 181
Query: 178 QAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTT 237
QA+GKIP+ VD HK H P+GV + K+G R P++ GG QE + R+
Sbjct: 182 QAVGKIPMNV-RHSAVDMLCACGHKLHAPKGVHALYVKRGLRFRPIVRGGHQERSRRAGN 240
Query: 238 ENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTF 297
AG +AL + +V+ +Q L V N PN
Sbjct: 241 GERAGHRRAGGGAHVALMHMTDENTRVKRSRQAGAAILAAVPNCFVTGNPANRLPNTCNV 300
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
+ GE ++ + +I S+ SAC+S + + AM VP A R+SL
Sbjct: 301 AFEYIEGEAILLLLNEADIAASSGSACTSGSLEPSHVMRAMGVPYTAAHGPTRLSLSRET 360
Query: 358 NMAEVEQFLTV 368
E+++ + V
Sbjct: 361 TEEEIDRVIRV 371
gi|3323174 (AE001256) nitrogen fixation protein (nifS-2) [Treponema pallidum]
Length = 427
Score = 160 bits (400), Expect = 2e-38
Identities = 125/433 (28%), Positives = 194/433 (43%), Gaps = 66/433 (15%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQ 61
+Y D +A ++ T A + NPS++H LG A LE +R A+ LG++ +
Sbjct: 3 LYLDWAAAAIPETRLILRETQQACTLFANPSAVHCLGNDARDALERARHTCAQSLGINPE 62
Query: 62 EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVD 121
+ FTSGG+E + L V + P+ I VS +EH +V L+ V PV+
Sbjct: 63 RLIFTSGGSEANQLALLSV-LTRLPHAE-ISVSMLEHASVTALLPRLERLQVSVRHIPVN 120
Query: 122 GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPT----ISFHVDAV 177
GF+ + + T L+ + AV++E G IQP+ I+ +LA T I HVDA
Sbjct: 121 ARGFITPEAVRATLSPRTTLVCVSAVHSETGAIQPLPAIAHVLAHTGTRGRSIQLHVDAA 180
Query: 178 QAIGKIPLEAWLT--------------------------ERVDFAV-LSAHKFHGPRGVG 210
QA GKIPL ++ + ++V +S HK PRG+G
Sbjct: 181 QAFGKIPLNLYMDLPRIEEHAQENNAPQTPPGYPAPTAQRALTYSVAISGHKIGAPRGIG 240
Query: 211 IVVAKKGKRLTPLLHGGGQEHNWRSTTENLAGIAATSKALRLALDDDDFKR--------- 261
++ A + TP + GGGQE R TENLAG A + +R + F R
Sbjct: 241 LLCAHRS--FTPFVLGGGQEKERRPGTENLAGALALAACVR----EGAFFRTLHTTPEGP 294
Query: 262 ------------QKVRAMKQVILEELEKHRKVHVFSKVE-----NFAPNILTFGIRGVRG 304
+ VRA + L +V + +F+P I+ ++ G
Sbjct: 295 TPHTKPTAPAGLRSVRARTCAFVRALSDLPRVQLVPATRKEDEAHFSPYIVCCAVQDASG 354
Query: 305 EVVVHAFEQHEIYISTTSACSSKKNAAAGTLV-AMNVPSKLATSAVRISLDSTNNMAEVE 363
E +V AF + IST SACS+KK + L+ A+ V S+ +R S +++
Sbjct: 355 EALVRAFSDAGVCISTGSACSTKKGGVSTRLLRALGVESRATRGVLRFSFGPHTTAEDLD 414
Query: 364 QFLTVFRQIYQEL 376
+ LT+FR + Q+L
Sbjct: 415 RVLTLFRTLLQKL 427
gi|2121290 (AF000116) tRNA splicing protein [Candida maltosa]
Length = 305
Score = 160 bits (400), Expect = 2e-38
Identities = 85/220 (38%), Positives = 131/220 (58%), Gaps = 4/220 (1%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D ATT V+P VL + T + GNP SS H G + +E +R IA+++ D
Sbjct: 85 IYLDVQATTPVDPRVLDKMLEFYTGLYGNPHSSTHAYGWETDKEVEKARGYIADVINADP 144
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
+EI FTSG T +N +KGV + HII + EH V ++A ++ +GF++ + PV
Sbjct: 145 KEIIFTSGATATNNMAIKGVPRFYKKTKKHIITTQTEHKCVLDSARHMQDEGFDITYLPV 204
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
+ +G + + +L K IR +T+L+S+MAVNNE+G IQP+ EI + + I FH DA QA
Sbjct: 205 NSEGLINLDDL-KAIRKDTVLVSVMAVNNEIGVIQPLKEIGQICREN-KIFFHTDAAQAY 262
Query: 181 GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRL 220
GKIP++ +D +S+HK +GP+G+G ++ R+
Sbjct: 263 GKIPIDV-NEMNIDLLSISSHKIYGPKGIGACYVRRRPRV 301
gb|AAC67851.1| (AE001298) NifS family of pyridoxal phosphate-dependent enzymes
[Chlamydia trachomatis]
Length = 374
Score = 145 bits (362), Expect = 6e-34
Identities = 104/376 (27%), Positives = 178/376 (46%), Gaps = 20/376 (5%)
Query: 2 IYFDNSATTAVNPMVLRTYTD--VATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVD 59
IY D +A+ + P VL + GNPSS+H G +L++ + I + LG
Sbjct: 3 IYLDTNASALLEPGVLMCLHSLFIGEGGFGNPSSVHSFGKKTKKLVKETSTLIEKALGFS 62
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAP 119
+ +TSG TE N +A + P G+H+I S++EHPAV + K +D P
Sbjct: 63 HCRVIYTSGATESLN-----LAIQNIPTGSHVITSSMEHPAVIEPLKQAKLSVTYLD--P 115
Query: 120 VDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQA 179
+ G+ V + ++++ ++ +T I + VN+EVG + I++ ++ + VDA
Sbjct: 116 IPGECVVSLEQIKEAVQSDTSAIVLGWVNSEVGVRIDLEAIAEFAKERQLLLI-VDATAI 174
Query: 180 IGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTEN 239
+GK + + E V S HKFH G+G+++ +++P++ GGGQ+ RS TE+
Sbjct: 175 VGKEVIH--IPEGVSMVAFSGHKFHALSGIGVLLTSPKIKISPIISGGGQQGGIRSGTEH 232
Query: 240 LAGIAATSKALRLALDDDDFKRQKVRAMKQVI---LEELEKHRKVHVFSKVENFAPNILT 296
+ GIA+ L + Q +R+ + + ++E VH K N+
Sbjct: 233 IHGIASLRYIFSKLLVEQPAIAQTMRSYRDLFESRIQETFPECIVHCQDKPR--VSNLSA 290
Query: 297 FGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDST 356
G+ GEV+ A + + SACSS +L M VP LA + +R S
Sbjct: 291 IAFPGLEGEVMQIALDLEGVACGYGSACSSGATTVFKSLTVMKVPQDLAVATLRFSF--- 347
Query: 357 NNMAEVEQFLTVFRQI 372
+ + E+ LT R++
Sbjct: 348 SYLLSEEEILTAARRV 363
emb|CAB39884.1| (AL049497) putative aminotransferase [Streptomyces coelicolor]
Length = 460
Score = 142 bits (355), Expect = 4e-33
Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 13/371 (3%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDS 60
M YFD ++ ++P+ + + +P+ L+ G A LL+A+R AE +G
Sbjct: 1 MAYFDAASAAPLHPVARQALLASLDEGWADPARLYREGRRARLLLDAAREATAECVGCRP 60
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
E+ FT GT + + G +R G H+IVS VEH +V + AE + G + V
Sbjct: 61 DELVFTPSGTRAVHSGVAGALAGRRRVGRHLIVSAVEHSSVLHAAEAHEAGGGSLTQVGV 120
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAI 180
D G V + + ++T L + + N+EVGT QP+ +++ + VDA Q++
Sbjct: 121 DRAGAVDPAAYAAALGEDTALACLQSANHEVGTEQPVARVAE-ACRAAGVPLLVDAAQSL 179
Query: 181 GKIPLEAWLTERVDFAVL--SAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTTE 238
G W D+++L SAHK+ GP GVG++ +KG R P +E E
Sbjct: 180 G------WGRVEGDWSLLTGSAHKWGGPSGVGLLAVRKGVRFAPQGPEDERESGRAPGFE 233
Query: 239 NLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEEL-EKHRKVHVFSKVENFAPNILTF 297
NL I A + +LR + + ++R + + I + E V V P I+TF
Sbjct: 234 NLPAIVAAAASLRAVRAEATAEAARLRELTERIRSRVPELVPDVEVVGDPSRRLPGIVTF 293
Query: 298 GIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTN 357
V GE ++H ++ +S+ S+C+S + L AM V L+ VR+SL
Sbjct: 294 SCLYVDGETLLHELDRAGFSVSSGSSCTSSTLTPSHVLRAMGV---LSEGNVRVSLPPGT 350
Query: 358 NMAEVEQFLTV 368
+VE+FL V
Sbjct: 351 AAEDVERFLEV 361
gi|722379 (U23139) similar to NIFS protein (nitrogen fixation)
[Caenorhabditis elegans]
Length = 328
Score = 141 bits (353), Expect = 7e-33
Identities = 93/320 (29%), Positives = 150/320 (46%), Gaps = 16/320 (5%)
Query: 55 LLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYGN--HIIVSNVEHPAVKNTAEWLKTQG 112
+ VD + + FTSGGTE +NW+++G + HII +N+EHP++ + + G
Sbjct: 1 MFNVDGECVVFTSGGTESNNWVIEGTIRNAKKVSKLPHIITTNIEHPSILEPLKRREEDG 60
Query: 113 -FEVDFAPVDG-DGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTI 170
V + ++ GFV + + +T L++IM NN+ G +QP+ EI + +K
Sbjct: 61 EISVTYVSINPLTGFVTSQSILDALTSDTCLVTIMLANNDTGVLQPVSEIFQAIREKLKT 120
Query: 171 S---FHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGG 227
+ H D QA GKIP+ + D + HKF+GPR ++ K KR+ P+L GG
Sbjct: 121 NVPFLHSDVAQAAGKIPVNV-RSLSADAVTVVGHKFYGPRSGALIFNPKSKRIPPMLLGG 179
Query: 228 GQEHNWRSTTENLAGIAATSKALRL----ALDDDDFKRQKVRAMKQVILEELEKHRKVHV 283
QE WRS TEN I +A ++ L+ + RQ ++++L+ L +H
Sbjct: 180 NQESGWRSGTENTPMIVGLGEAAKVYNEGFLNIESILRQNRDYFEELLLKRLRNSHIIHF 239
Query: 284 FSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSK 343
PN + + ST +AC KN + L A +P
Sbjct: 240 IGSQR--LPNTSSVAFLDYPSHGCDLLEKCQTFNASTGAAC--HKNECSPILKACGIPFA 295
Query: 344 LATSAVRISLDSTNNMAEVE 363
+A+ VRIS + +AE+E
Sbjct: 296 VASKTVRISFGRSTKIAEIE 315
emb|CAA09424| (AJ010952) putative tRNA splicing protein [Homo sapiens]
Length = 318
Score = 139 bits (347), Expect = 4e-32
Identities = 85/294 (28%), Positives = 151/294 (50%), Gaps = 7/294 (2%)
Query: 90 HIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNN 149
H+I + EH V ++ L+ +GF+V + PV G + + ELE I+ +T L+S+M VNN
Sbjct: 9 HLITTQTEHKCVLDSCRSLEAEGFQVTYLPVQKSGIIDLKELEAAIQPDTSLVSVMTVNN 68
Query: 150 EVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGV 209
E+G QPI EI + + + + FH DA QA+GKIPL+ ++D +S HK +GP+GV
Sbjct: 69 EIGVKQPIAEIGRICSSR-KVYFHTDAAQAVGKIPLDV-NDMKIDLMSISGHKIYGPKGV 126
Query: 210 GIVVAKKGK--RLTPLLHGGGQEHNWRSTTENLAGIAATSKALRLALDDDDFKRQKVRAM 267
G + ++ R+ L GGGQE RS T + A +A + ++ +++ +
Sbjct: 127 GAIYIRRRPRVRVEALQSGGGQERGMRSGTVPTPLVVGLGAACEVAQQEMEYDHKRISKL 186
Query: 268 KQVILEELEKH-RKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSS 326
+ +++ + K V + ++ P + V GE ++ A + ++ +S+ SAC+S
Sbjct: 187 SERLIQNIMKSLPDVVMNGDPKHHYPGCINLSFAYVEGESLLMALK--DVALSSGSACTS 244
Query: 327 KKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVS 380
+ L A+ LA S++R + EV+ + Q + L ++S
Sbjct: 245 ASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTEEEVDYTVEKCIQHVKRLREMS 298
gb|AAF12840.1|AF203881_13 (AF203881) NifS [Zymomonas mobilis]
Length = 370
Score = 132 bits (328), Expect = 6e-30
Identities = 90/240 (37%), Positives = 122/240 (50%), Gaps = 11/240 (4%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMG--NPSSLHGLGTTATRLLEASRRQIAELLGV 58
MIY D ATT PM + + G NP S H +G A + ++ QIA L+
Sbjct: 1 MIYLDYQATT---PMAPEAKAAMLPWLDGGANPHSPHRIGRKAAAAVAIAKDQIAALIPE 57
Query: 59 -DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDF 117
++ + FTSG TE N +KG+ F + I+ EH A ++ +L G E+
Sbjct: 58 REAGNLVFTSGATEALNMAIKGLWFSGKNTRRKIVTLATEHAATLDSLGYLARLGAEIVL 117
Query: 118 APVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
PV DG V + + I D+T L++ M VNNE+G IQPI E++ LA + F +DAV
Sbjct: 118 LPVHSDGLVDLEKAAAAIDDKTALVTAMFVNNEIGVIQPIAELAK-LACQVGAYFLLDAV 176
Query: 178 QAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTT 237
Q G+ L E D LS HK H P G G + KK LTPLLHGG Q+ +RS T
Sbjct: 177 QGYGRFA----LPEGCDMIALSGHKIHAPIGSGALWFKKDITLTPLLHGGHQQEGFRSGT 232
gb|AAD18539| (AE001623) NifS-related aminotransferase [Chlamydia pneumoniae]
Length = 371
Score = 131 bits (327), Expect = 8e-30
Identities = 109/385 (28%), Positives = 175/385 (45%), Gaps = 24/385 (6%)
Query: 1 MIYFDNSATTAVNPMVLRTY--TDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGV 58
MIY DN+A T +L T + NPSS+H LG + +L+ + + ++L
Sbjct: 1 MIYLDNNAMTPPERGLLEFLQKTFLIEGTYANPSSVHQLGKKSRQLVLEASHWMQKVLSF 60
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFA 118
+ + +TSG TE N +A P +H+I S EHPA+ E LK V +
Sbjct: 61 QGR-VLYTSGATESLN-----LAIASLPKDSHVITSGSEHPAI---LEPLKHSSLSVSYL 111
Query: 119 -PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
P +G + + ++E+ + +T I + VN+E G I I+ A + + F VDA
Sbjct: 112 NPEEGRCVLTIEQIERAVTPKTSAIILGWVNSETGAKADIAAIAHF-AQERQLQFIVDAT 170
Query: 178 QAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGGGQEHNWRSTT 237
+GK + L V A S HKFH G+G ++ G +L P L GGGQ+ R+ T
Sbjct: 171 ANVGKERIV--LPSGVTMAAFSGHKFHALSGIGALLVSPGVKLHPQLWGGGQQGGLRAGT 228
Query: 238 ENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRK-----VHVFSKVENFAP 292
ENL GIA+ + D ++++ EK K VH+ + A
Sbjct: 229 ENLWGIASLLYIFKYL----DLHQERISQEILTHRNGFEKAIKARIPDVHIHCADQPRAN 284
Query: 293 NILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRIS 352
N+ + GEV+ A + + SACSS A +LV+M V +L + +R S
Sbjct: 285 NVSAIAFPPLEGEVLQIALDIEGVACGYGSACSSGATAPFKSLVSMGVDEELTLATLRFS 344
Query: 353 LDSTNNMAEVEQFLTVFRQIYQELE 377
+VE+ + + ++ + L+
Sbjct: 345 FSHLLLQEDVERAVGIIEKVVERLK 369
gb|AAD36460.1|AE001791_22 (AE001791) aminotransferase, class V [Thermotoga maritima]
Length = 413
Score = 104 bits (257), Expect = 1e-21
Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 37/340 (10%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
++Y D++ATT V++ + N ++H L AT E +R + AE LG
Sbjct: 22 IVYLDSAATTLKPKQVVKKLEEFYYNSYANVHRAVHTLAVRATTEFEETREEFAEFLGAS 81
Query: 60 SQEIFFTSGGTEGDN-----WILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWL---KTQ 111
+EI FTSG T N + G+ E + ++VS +EH A N WL K
Sbjct: 82 PEEIIFTSGTTMAINLAVVSLLRSGILKE----DDLVLVSLLEHHA--NFVPWLRLSKFH 135
Query: 112 GFEVDFAPVDGD-GFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTI 170
G+ +DF G G + + +L K +++I ++N G P+ E+ ++ P
Sbjct: 136 GYRIDFIRPSGRFGTLEMDDLLKHRDKNPKVVAITGLSNVTGQRIPVEELRNVF---PNS 192
Query: 171 SFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGG 228
+D Q I P++ VDF S HK GP GVG++ K+ +++ P L+GG
Sbjct: 193 IILLDGAQLIPHEPVKP-KEIGVDFLAFSLHKMLGPTGVGVLYGKREVLEQMEPFLYGGE 251
Query: 229 Q--------------EHNWRSTTENLAGIAATSKALRLALDDD-DFKRQKVRAMKQVILE 273
+ + + T N+A I A+ +ALR + D +K+ + Q+ L+
Sbjct: 252 MIDRVSLEDVTFNELPYKFEAGTPNIADIVASREALRYLKETGFDSVHEKIEQLTQMALK 311
Query: 274 ELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQ 313
E+ K V ++ ++ I++F ++G+ V H +Q
Sbjct: 312 EMMKIGGVEIYGPLDERQHGIVSFNVKGIHPHDVAHILDQ 351
gb|AAF30866.1|AE002141_12 (AE002141) nitrogen fixation protein - class-V pyridoxal-phosphate
aminotransferase [Ureaplasma urealyticum]
Length = 402
Score = 99.1 bits (243), Expect = 6e-20
Identities = 100/412 (24%), Positives = 181/412 (43%), Gaps = 59/412 (14%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATR-LLEASRRQIAELLGVD 59
+IY D+SAT+ +V+ D TK NP + T T ++ +R +A+ + +
Sbjct: 17 VIYLDSSATSLKPQVVIDAIVDYYTKYSTNPHNTDSNFTFHTHEIMNETRANVAKFINAN 76
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPY---GNHIIVSNVEHPAVKNTAEWLKTQ---GF 113
EI FTSG TE N I G+ RP+ G+ II++ +EH N W K + G
Sbjct: 77 FDEIIFTSGATESLNLIANGL----RPHLKKGDEIILTYIEH--ASNLLPWYKLRDDLGV 130
Query: 114 EVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIG-EISDLLADKPTISF 172
++ FA + F +S+ K+I +T ++S + N +G + I ++ KP +
Sbjct: 131 KIIFAN-QKNQFPQLSDFLKVISPKTKVVSFASGGNLIGNVLDENLIIKNIKKIKPDVLV 189
Query: 173 HVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQE 230
VDA Q+I + + DF V SAHK GP G+G+ K K++ PL +GGG
Sbjct: 190 CVDATQSIQHRMFDVKKC-KSDFMVFSAHKLLGPTGIGVAYIKNDLIKKMQPLKYGGGMN 248
Query: 231 HN--------------WRSTTENLAGIAATSKALRLALD-------DDDFKRQKVRAMKQ 269
+ + T ++AG + AL+ +D + + K K +
Sbjct: 249 FSIDLNSYQLYDNYMKFEGGTPHVAGFYGFNAALKFLMDIGYNKIHEHELKITKYARDQL 308
Query: 270 VILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKN 329
++ E++ + V++ + +TF GV + + I + + +C+ N
Sbjct: 309 ALIPEIKTY--------VQDATSSTITFSYNGVFCQDFANYLGSKNIIVRSGLSCAKIIN 360
Query: 330 AAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVSG 381
T A+R S N+ +V++ + ++ YQ+ ++++G
Sbjct: 361 NVIQT-----------ECAIRASFYIYNDFNDVDRLIKAIKE-YQKGDELNG 400
emb|CAB49156.1| (AJ248283) NIFS PROTEIN [Pyrococcus abyssi]
Length = 401
Score = 97.1 bits (238), Expect = 2e-19
Identities = 98/410 (23%), Positives = 182/410 (43%), Gaps = 63/410 (15%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
+IYFDN+AT+ V+ + + N +H L AT+ E SR+ +A+ + +
Sbjct: 17 VIYFDNTATSLTPKPVIEAMDEYYLRYRANVHRGVHRLSQMATQKYEESRKVVADFINAE 76
Query: 60 SQEIFFTSGGTEGDNWILKGV--AFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFE 114
EI FT +E N + G+ F+K G+ I+ + EH + N W K +G +
Sbjct: 77 FDEIAFTKNTSESLNLVALGLEHLFKK---GDKIVTTPYEHHS--NLLPWQRLAKKKGLK 131
Query: 115 VDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
++F D +G + +++ EK I+ L+++ V+N +G I + E+ ++ ++ I F V
Sbjct: 132 LEFIEGDDEGNLDLADAEKKIKGAK-LVAVQHVSNALGVIHEVEELGKMVKEEGAI-FVV 189
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKF-HGPRGVGIVVAKKG--KRLTPLLHGGG--- 228
DA Q++G + ++ + DF S HK GP G+G++ K P L GGG
Sbjct: 190 DAAQSVGHMEVDV-KKLKADFLAFSGHKGPMGPTGIGVLYINKEFFDVFEPPLIGGGTIE 248
Query: 229 -----------QEHNWRSTTENLAGIAATSKALRL--ALDDDDFKRQKVRAMKQVI--LE 273
+ + T N+ G + ++ + D ++Q+ + +K+ L+
Sbjct: 249 DVELCCYKLTEPPERFEAGTPNIGGAIGLAAGIKYIEKIGIDKIEKQERKLVKRTTEGLD 308
Query: 274 ELE------KHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSK 327
ELE ++ H +++F + + V ++H+I + + C
Sbjct: 309 ELEIPWYGPRNLDKHA---------GVVSFNVPPLHPHDVASVLDEHKIMVRSGHHC--- 356
Query: 328 KNAAAGTLVAMNVPSKL-ATSAVRISLDSTNNMAEVEQFLTVFRQIYQEL 376
A+ V +L VR S N++ EVE FL V ++ + L
Sbjct: 357 ---------ALPVMKRLKINGTVRASFHVYNSLEEVETFLGVLEELVKSL 397
gi|2622499 (AE000901) nifS protein [Methanobacterium thermoautotrophicum]
Length = 400
Score = 94.0 bits (230), Expect = 2e-18
Identities = 69/233 (29%), Positives = 113/233 (47%), Gaps = 13/233 (5%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVDS 60
+Y D ++TT V+R T+ + N + L ATR L+ +R ++A + S
Sbjct: 20 VYLDAASTTPTPLPVVRAMTEYFKEYNANTGRGAYSLVLRATRKLQEAREKVAGFINASS 79
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW--LKTQGFEVDFA 118
EI FT +E N + G+ F K G+ ++V N+EH + N W L+ +G +V
Sbjct: 80 DEIVFTKNTSEAINIVAGGLRFRK---GDSVVVPNIEHHS--NFLPWLRLRERGVDVRVV 134
Query: 119 PVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQ 178
D G V +E + + T L+++ ++N +GT+Q + EI + D + + VDA Q
Sbjct: 135 KADEGGVVDPGRIEDAVDETTRLVTVTHISNALGTVQDVKEIGRIAHDVGAL-YLVDAAQ 193
Query: 179 AIGKIPLEAWLTERVDFAVLSAHK-FHGPRGVGIVVAKKGKR--LTPLLHGGG 228
+IG + ++ DFA HK GP G G + + L PL+ GGG
Sbjct: 194 SIGHMEVDV-RAIGADFAAFPGHKGTLGPVGTGFLYCSTDVQGELEPLMLGGG 245
emb|CAB15258| (Z99120) similar to NifS protein homolog [Bacillus subtilis]
Length = 406
Score = 93.6 bits (229), Expect = 2e-18
Identities = 63/234 (26%), Positives = 114/234 (47%), Gaps = 11/234 (4%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
++Y D++AT+ V+ T + N +H LGT AT E +R ++ + +
Sbjct: 22 LVYLDSAATSQKPRAVIETLDKYYNQYNSNVHRGVHTLGTRATDGYEGAREKVRKFINAK 81
Query: 60 SQ-EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFEV 115
S EI FT G T N + A G+ ++++ +EH A N W +K G +
Sbjct: 82 SMAEIIFTKGTTTSLNMVALSYARANLKPGDEVVITYMEHHA--NIIPWQQAVKATGATL 139
Query: 116 DFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVD 175
+ P+ DG + + ++ + + T ++++ V+N +GT+ PI E++ + D + VD
Sbjct: 140 KYIPLQEDGTISLEDVRETVTSNTKIVAVSHVSNVLGTVNPIKEMAKIAHDNGAV-IVVD 198
Query: 176 AVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG 227
Q+ + ++ + DF LS+HK GP GVG++ KK + + P GG
Sbjct: 199 GAQSTPHMKIDVQDLD-CDFFALSSHKMCGPTGVGVLYGKKALLENMEPAEFGG 251
gb|AAD18828| (AE001651) NifS-related Aminotransferase [Chlamydia pneumoniae]
Length = 406
Score = 91.7 bits (224), Expect = 9e-18
Identities = 102/405 (25%), Positives = 171/405 (42%), Gaps = 48/405 (11%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVDS 60
IY D++ATT V+ + T + +++ T A R ++ + + S
Sbjct: 22 IYLDSAATTQKPQQVIDAVANFYTSSYATVNRAIYSSSRNVTEAYAAVREKVRKWVSAAS 81
Query: 61 Q-EIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFEVD 116
EI FT G T G N + V P G ++VS EH A N W + +G V
Sbjct: 82 DSEIVFTRGTTAGLNLLAISVNDLWIPKGGVVLVSEAEHHA--NVLSWEIACRRRGSLVK 139
Query: 117 FAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
V G + + +LEKL+ + +SI V+N G +QP+ ++++L+ + VD
Sbjct: 140 KIRVHDSGLIDLDDLEKLLNEGAQFVSIPHVSNVTGCVQPLQQVAELV-HRYDAYLAVDG 198
Query: 177 VQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQ----E 230
Q +P++ L + VDF V S+HK +GP G+G++ KK +L P+ GG +
Sbjct: 199 AQGAPHLPIDVQLWD-VDFYVFSSHKIYGPTGIGVLYGKKDLLDQLPPVEGGGDMVAIYD 257
Query: 231 H----------NWRSTTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRK 280
H + + T N+AG+ L ALD D K K++ L H++
Sbjct: 258 HQNPEYLPAPMKFEAGTPNIAGVL----GLGAALDYLDGLSAKFIYDKEIALTTY-LHKE 312
Query: 281 VHVFSKVENFAPNI-------LTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAG 333
+ VE P+I + I G + + I + T C A
Sbjct: 313 LLEIPGVEILGPSIEEPRGALIGMTIDGAHPLDLGFLLDLRGIAVRTGHQC------AQP 366
Query: 334 TLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEK 378
+ NV L R+SL N+ +++QF+ V + ++ +
Sbjct: 367 AMERWNVGHVL-----RVSLGIYNDEDDIDQFILVLQDSLDKIRR 406
dbj|BAA15457| (D90811) NifS protein. [Escherichia coli] >gi|1742773|dbj|BAA15463|
(D90812) NifS protein. [Escherichia coli] >gi|1787970
(AE000263) orf, hypothetical protein [Escherichia coli]
Length = 406
Score = 91.3 bits (223), Expect = 1e-17
Identities = 95/369 (25%), Positives = 161/369 (42%), Gaps = 47/369 (12%)
Query: 34 LHGLGTTATRLLEASRRQIAELLGVDS-QEIFFTSGGTEGDNWILKGVAFEKRPYGNHII 92
+H L AT +E R++ + + S +E+ F G TEG N + G++II
Sbjct: 58 IHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNII 117
Query: 93 VSNVEHPAVKNTAEW---LKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNN 149
+S +EH A N W G E+ P++ DG + + L L ++T L++I V+N
Sbjct: 118 ISQMEHHA--NIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSN 175
Query: 150 EVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGV 209
+GT P+ E+ LA + VD QA+ P++ + DF V S HK +GP G+
Sbjct: 176 VLGTENPLAEMI-TLAHQHGAKVLVDGAQAVMHHPVDVQALD-CDFYVFSGHKLYGPTGI 233
Query: 210 GIVVAKKG-KRLTPLLHGGGQ--------------EHNWR--STTENLAGIAATSKALRL 252
GI+ K+ + P GGG + WR + T N GI AL
Sbjct: 234 GILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL-- 291
Query: 253 ALDDDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVV---- 308
+ V A+ + E E++ + S++E+ P++ +G + G +
Sbjct: 292 ---------EYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQNRLGVIAFNLGK 341
Query: 309 -HAFEQHEIYISTTSACSSKKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLT 367
HA++ + A + + A + NVP + R SL N EV++ +T
Sbjct: 342 HHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVP-----AMCRASLAMYNTHEEVDRLVT 396
Query: 368 VFRQIYQEL 376
++I++ L
Sbjct: 397 GLQRIHRLL 405
gi|2687967 (AE001121) aminotransferase (nifS) [Borrelia burgdorferi]
Length = 422
Score = 90.5 bits (221), Expect = 2e-17
Identities = 95/403 (23%), Positives = 171/403 (41%), Gaps = 40/403 (9%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
+IYFDN+AT+ V+ + + N S H ++ +E +R + + +
Sbjct: 32 IIYFDNAATSQKPKNVIYSNVEYYENYNANVHRSGHKFAIQSSIKIEKTRELVKNFINAE 91
Query: 60 S-QEIFFTSGGTEGDNWILKGVAFEKR-PYGNHIIVSNVEHPAVKNTAEWLKTQGF---E 114
S + I FTSG T+G N I + K + II++ +EH + N W+ +
Sbjct: 92 SAKNIIFTSGTTDGINTIASSFFYSKYFKKKDEIILTTLEHNS--NLLPWVNLANLANLK 149
Query: 115 VDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
+ A + G + E+EKLI ++T LISI +NN +GTI + I +A K I V
Sbjct: 150 IKLAKFNEMGIITPEEIEKLITEKTKLISISGINNTLGTINDLESIGK-IAKKYNICLFV 208
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKK--GKRLTPLLHGGG---- 228
DA Q I ++ DF V S HK P G+GI+ ++L GG
Sbjct: 209 DAAQMAPHIKIDV-KKIGCDFLVFSGHKMLAPTGIGILYISNNMAEKLHSSKLGGNTVEE 267
Query: 229 --------------QEHNWRSTTENLAGIAATSKALRLALD-DDDFKRQKVRAMKQVILE 273
+ + S T N+AGI +A++ + DF + + + + ++
Sbjct: 268 IFIENEKIKFKASDSPNKFESGTPNIAGIIGLEEAIKYIDNISMDFILEHDKQLIEYGVK 327
Query: 274 ELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAG 333
+L++ +V +I++F ++ + + E Y+ T + +
Sbjct: 328 KLQELDEVEFILNTNLKRNSIISFTVKNIHSHDI-------ETYLDTMGIAT--RAGRTC 378
Query: 334 TLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQEL 376
+ VA + +RIS N E++ F+ +++ +EL
Sbjct: 379 SYVAFFPENLNKDHLLRISFYFYNTQEEIDNFILGLKKVIKEL 421
emb|CAB11409| (Z98741) nifS-like protein [Mycobacterium leprae]
Length = 611
Score = 88.2 bits (215), Expect = 1e-16
Identities = 99/394 (25%), Positives = 166/394 (42%), Gaps = 38/394 (9%)
Query: 1 MIYFDNSATTAVNPMVL-RTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGV- 58
+I+FDN+ATT +V+ R A + + H L AT E +R +G
Sbjct: 226 LIWFDNAATTQKPQVVIDRLSYFYAHENSNIHRAAHELAARATDAYEEARETARRFIGAA 285
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW--LKTQ-GFEV 115
+QEI F G TE N + + G+ ++++++EH A N W L +Q G +
Sbjct: 286 KAQEIIFVRGTTEAINLVAYAWGGKHLQPGDEVVITHLEHHA--NIVPWQLLSSQTGAIL 343
Query: 116 DFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVD 175
APVD G +++SE E L+ T L++ V+N +GT+ GE L + +D
Sbjct: 344 KVAPVDDAGNLLMSEFEDLLGPRTKLVAATQVSNALGTVTQ-GEKIVELGHRYGARVLID 402
Query: 176 AVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG------ 227
Q+I +P+ DF V S HK +GP G+G++ + + P GG
Sbjct: 403 GAQSIPHLPINV-SELGADFFVFSGHKIYGPTGIGVLYGCEDVLTEMPPWQGGGNMIVDV 461
Query: 228 --------GQEHNWRSTTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHR 279
G + + + T N+A +ALR + Q++ + +Q +L+
Sbjct: 462 TLERSLYQGPPNKFEAGTGNIADAVGLGEALRYV---ERVGVQRIASHEQALLD------ 512
Query: 280 KVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAMN 339
+ ++ + P + G + V+ HE + + AG A
Sbjct: 513 --YATPRLADI-PGVRLVGTATEKASVLSFVLAGHEPLEVGKALNAEGIAVRAGHHCAQP 569
Query: 340 VPSKLATSA-VRISLDSTNNMAEVEQFLTVFRQI 372
V +L A VR S N E++ F+ V R+I
Sbjct: 570 VLRRLGLEATVRPSFAFYNTYEEIDVFINVVRRI 603
pir||I64114 nitrogen fixation protein (nifS) homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1574753 (U32809) nifS protein,
putative [Haemophilus influenzae Rd]
Length = 437
Score = 87.0 bits (212), Expect = 2e-16
Identities = 92/390 (23%), Positives = 161/390 (40%), Gaps = 44/390 (11%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLL--EASRRQIAELLGV 58
+IY DN+ATT + P VL D + + S+H A + + E +R Q+ E +
Sbjct: 59 VIYLDNAATT-LKPQVL---IDRTAEFYASAGSVHRSQYDAAQTVQYEQARTQVKEWVHA 114
Query: 59 -DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQ---GFE 114
D + +TSG T N + G+ + + I++S +H A N W +T G +
Sbjct: 115 EDKHAVIWTSGTTHAINLVANGLMPQLNAE-DEILISQADHHA--NFVTWHETAKKCGAK 171
Query: 115 VDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHV 174
+ P+ + + + L + ++T L+++ V+N GT QPI + L+ V
Sbjct: 172 IQVLPILDNWLIDENALISALSEKTKLVALNFVSNVTGTEQPIKRLIQLIRKHSNALVLV 231
Query: 175 DAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQ--- 229
DA QAI I ++ + DF SAHK +GP G+G++ K +L PL GG
Sbjct: 232 DAAQAISHIKIDLQDLD-ADFLAFSAHKIYGPNGLGVLTGKLTALSQLQPLFFGGKMVDR 290
Query: 230 -----------EHNWRSTTENLAGIAATSKALR-LALDDDDFKRQKVRAMKQVILEELEK 277
+ + T N+AG+ + L L D Q ++ + + L+
Sbjct: 291 VSNDRITFAELPYRLEAGTPNIAGVIGFNAVLDWLQKWDFTAAEQYAISLAESVKVRLKS 350
Query: 278 HRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVA 337
+ +F+ + A ++ F G+ + + I + C+ A G
Sbjct: 351 YENCRLFNSPQ--ASTVVCFVFDGIDCSDLSTLLSEQNIALRVGEHCAQPYLARLG---- 404
Query: 338 MNVPSKLATSAVRISLDSTNNMAEVEQFLT 367
+ +R+S N +VE F T
Sbjct: 405 -------ERTTLRLSFAPYNTQEDVEAFFT 427
gi|3322912 (AE001236) nitrogen fixation protein (nifS-1) [Treponema pallidum]
Length = 404
Score = 85.0 bits (207), Expect = 9e-16
Identities = 84/346 (24%), Positives = 140/346 (40%), Gaps = 28/346 (8%)
Query: 3 YFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGV-DS 60
Y D++ATT VL T + GN H L + L+E +R++ A+ + +
Sbjct: 21 YLDSAATTQRPAPVLERVMHYHTHLNGNAGRGSHELAVESALLIENTRKKTAQFINAAPT 80
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFEVDF 117
+I FT TE N I A + G+ I+++ H A N W + G + +
Sbjct: 81 HDIVFTKSCTESLNIIAHCYALPRLRAGDEIVLAISNHHA--NIVPWQHVCRCTGATIQW 138
Query: 118 APVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAV 177
D +G + + E +K IR T ++S AV N G + P E++ LA + +D
Sbjct: 139 LYPDAEGNLDIQEAQKKIRACTKIVSFSAVVNATGAVNPAQELT-ALAHQVGAVVVIDGA 197
Query: 178 QA-IGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQ----- 229
QA + +P A L DF V S HK GVG++ A + + P L+GGG
Sbjct: 198 QAMVHGVPNVADLG--CDFFVFSGHKMFSLFGVGVLCAPHTLLESMPPFLYGGGMVDFVT 255
Query: 230 ---------EHNWRSTTENLAGIAATSKALRLALD-DDDFKRQKVRAMKQVILEELEKHR 279
H + + N A + + A+ + R V A+ +L LE+
Sbjct: 256 EQESVFKGAPHKYEGGSANTAAVVSLCAAIEYCESLESSAVRASVHALDAALLARLEELP 315
Query: 280 KVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACS 325
+ + I+ F ++ V H + + + + CS
Sbjct: 316 FLETYHARARERLGIIAFNVKNVHSHDTAHILGEEGVMVRSGDHCS 361
gb|AAC68282.1| (AE001339) NifS-related enzyme [Chlamydia trachomatis]
Length = 401
Score = 84.3 bits (205), Expect = 2e-15
Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 13/234 (5%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD- 59
+Y D++ATT V+ + D + + +L+ T R ++ +G
Sbjct: 19 VYLDSAATTHKPQCVIDSIVDYYSSSYATVNRALYTASHDITFAHWQVRSKVGSWIGAQY 78
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFEVD 116
QEI FT G T N +L A + G +++S EH A N W + G +
Sbjct: 79 DQEIIFTRGTTSSLN-LLAIAANDSWLAGGTVVISEAEHHA--NLVSWELACQRSGATIK 135
Query: 117 FAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
VD +G V S LE+L++ L+S+ V+N G + P+ EI+ L+ + F VD
Sbjct: 136 KVRVDDEGMVDCSHLEQLLKQGVQLVSLAHVSNVSGAVLPLPEIAHLVHRYEAL-FAVDG 194
Query: 177 VQAIGKIPLEAWLTE-RVDFAVLSAHKFHGPRGVGIVVAKKG-KRLTPLLHGGG 228
Q +GK PL L+E VDF S HK + P G+G++ KK P + GGG
Sbjct: 195 AQGVGKGPLN--LSEWGVDFYAFSGHKLYAPTGIGVLYGKKELLESLPPVEGGG 246
emb|CAB50746.1| (AL096839) putative aminotransferase [Streptomyces coelicolor]
Length = 418
Score = 83.1 bits (202), Expect = 4e-15
Identities = 63/238 (26%), Positives = 117/238 (48%), Gaps = 15/238 (6%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
++Y DN+AT+ VL ++ + N +H L AT L E +R ++AE +
Sbjct: 30 LVYLDNAATSQKPRQVLDALSEYYERYNANVHRGVHVLAEEATALYEGARDKVAEFINAP 89
Query: 60 SQ-EIFFTSGGTEGDNWILKGVAFEKRPYG----NHIIVSNVEHPAVKNTAEW---LKTQ 111
S+ E+ FT +E N + + + PY I+++ +EH + N W +
Sbjct: 90 SRDEVIFTKNASESLNLVANMLGWADDPYRVDHETEIVITEMEHHS--NIVPWQLLAQRT 147
Query: 112 GFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTIS 171
G ++ + + DG + +S ++++I ++T ++S + V+N +GT P+ E A +
Sbjct: 148 GAKLRWFGLTDDGRLDLSNIDEVITEKTKVVSFVLVSNILGTQNPV-EAIVRRAQEVGAL 206
Query: 172 FHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG 227
+DA QA +PL+ + DF + HK GP G+G++ ++ + L P L GG
Sbjct: 207 VCIDASQAAPHMPLDVQALQ-ADFVAFTGHKMCGPTGIGVLWGRQELLEDLPPFLGGG 263
dbj|BAA81033.1| (AP000063) 411aa long hypothetical tRNA splicing protein SPL1
[Aeropyrum pernix]
Length = 411
Score = 79.2 bits (192), Expect = 5e-14
Identities = 60/234 (25%), Positives = 107/234 (45%), Gaps = 10/234 (4%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
++Y DN+A+T V+ + + + N +H L A++ E + +A L+G
Sbjct: 20 IVYLDNAASTLKPRRVVEAMREFSYRSYANVHRGVHRLSMEASKAYEDAHEVVARLVGGS 79
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQ---GFEVD 116
E+ FT TE +A+ G ++V+ +H + W++ G
Sbjct: 80 WDEVVFTRNTTEAMQLAALTLAYNGLLRGGEVLVTAADHHST--LLPWVRAARLGGGRAR 137
Query: 117 FAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
P+DG G LE I ++T +++ V+N G + P+ +I A K +D+
Sbjct: 138 ILPLDGRGVPRWDLLEDYITEDTRAVAVGHVSNVTGVVAPVEDIVKA-AKKVGALVVLDS 196
Query: 177 VQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGG 228
Q + +P++ + VD A S HK GP G+G++ A++ + L P L GGG
Sbjct: 197 AQGVPHLPVD-FRRMGVDMAAFSGHKMLGPTGIGVLWARRDLLEELEPPLGGGG 249
gi|882705 (U29581) ORF_o401 [Escherichia coli] >gi|1789175 (AE000364) orf,
hypothetical protein [Escherichia coli]
Length = 401
Score = 77.6 bits (188), Expect = 2e-13
Identities = 90/365 (24%), Positives = 149/365 (40%), Gaps = 32/365 (8%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGV-D 59
+Y D++AT V+ + GN S T EA+R ++A+LL D
Sbjct: 21 VYLDSAATALKPEAVVEATQQFYSLSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPD 80
Query: 60 SQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWL---KTQGFEVD 116
+ I +T G TE N + + A + G+ IIVS EH A N WL + G +V
Sbjct: 81 DKTIVWTRGTTESINMVAQCYARPRLQPGDEIIVSVAEHHA--NLVPWLMVAQQTGAKVV 138
Query: 117 FAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
P++ V L +LI + ++++ ++N G + + A + VD
Sbjct: 139 KLPLNAQRLPDVDLLPELITPRSRILALGQMSNVTGGCPDLAR-AITFAHSAGMVVMVDG 197
Query: 177 VQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQEHN-- 232
Q P + + +DF S HK +GP G+G++ K + ++P L GG H
Sbjct: 198 AQGAVHFPADVQQLD-IDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMVHEVS 256
Query: 233 ----------WR--STTENLAGIAATSKALRLALDDDDFKRQK-VRAMKQVILEELEKHR 279
W+ + T N+AG+ S AL D D + + R++ + + L K
Sbjct: 257 FDGFTTQSAPWKLEAGTPNVAGVIGLSAALEWLADYDINQAESWSRSLATLAEDALAKRP 316
Query: 280 KVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNA---AAGTLV 336
F ++ ++L F GV +V ++ I + C+ A GTL
Sbjct: 317 GFRSFRCQDS---SLLAFDFAGVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLR 373
Query: 337 AMNVP 341
A P
Sbjct: 374 ASFAP 378
dbj|BAA10545| (D64004) NifS [Synechocystis sp.]
Length = 420
Score = 76.5 bits (185), Expect = 3e-13
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 10/235 (4%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
++Y DN+AT+ VL N H L AT EA R ++A+ +
Sbjct: 29 LVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINAR 88
Query: 60 S-QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQ---GFEV 115
S +EI +T TE N + G+ II + +EH + N W G +
Sbjct: 89 SPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHS--NLVPWQMVAAKTGAVL 146
Query: 116 DFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVD 175
F +D + + L+ ++T L++++ ++N +G + P EI+ L A + VD
Sbjct: 147 KFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQL-AHQAGAKVLVD 205
Query: 176 AVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG-KRLTPLLHGGGQ 229
A Q+ PL+ L + D+ V S HK P G+G + K+ P GGG+
Sbjct: 206 ACQSAPHYPLDVQLID-CDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGE 259
sp|P75298|NISH_MYCPN NIFS-LIKE PROTEIN >gi|2146475|pir||S73681 nitrogen fixation protein
nifS - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1674033 (AE000034) Mycoplasma pneumoniae, nitrogen
fixation protein; similar to GenBank Accession Number
I64114, from H. influenzae [Mycoplasma pneumoniae]
Length = 408
Score = 74.5 bits (180), Expect = 1e-12
Identities = 79/303 (26%), Positives = 130/303 (42%), Gaps = 27/303 (8%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNP-SSLHGLGTTATRLLEASRRQIAELLGVDS 60
+ FDN+AT+ V + + NP + L ++ +R+ +A+ V +
Sbjct: 25 VNFDNAATSIALDTVSQACKEYYELFSVNPHNKTPDLNNQIIAIIAETRQLVADWFNVTA 84
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLK-TQGFEVDFAP 119
EI FTS TE N G+ +P G+ I++ EH A N W+ + +
Sbjct: 85 LEIIFTSSATESINLFAHGLKPWIKP-GDEIVLKGDEHSA--NVLPWVALAKQTKARLVW 141
Query: 120 VDGDGFVIVSELEK-LIRDETILISIMAVNNEVGTIQPIGEISDLLAD-KPTISFHVDAV 177
V+ + + K LI +T +++I A +N G +I+D L P VDAV
Sbjct: 142 VEKQANQSLEDTFKSLINPKTKVVAITATSNLFGNSIDFAQIADYLKQVNPKAFVAVDAV 201
Query: 178 QAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG-------- 227
Q + ++ T+ +DF S HKF+GP G+G+ KK +L PL GG
Sbjct: 202 QTVQHKQIDIAKTQ-IDFLAFSTHKFYGPTGLGVAYIKKSLQPQLQPLKLGGDIFTQIDP 260
Query: 228 GQEHNWRST-------TENLAGIAATSKALRLALDDDDFKRQKV--RAMKQVILEELEKH 278
+++ST T N+ I A +K LR +F + +KQ E L +
Sbjct: 261 DNTIHFKSTPLKFEAGTPNIMAIYALNKLLRFFKQKFNFAQMMAYGHQLKQQAYELLNSN 320
Query: 279 RKV 281
++
Sbjct: 321 PQI 323
dbj|BAA75914.1| (AB024602) NIFS-like protein [Pseudomonas putida]
Length = 401
Score = 70.6 bits (170), Expect = 2e-11
Identities = 95/398 (23%), Positives = 163/398 (40%), Gaps = 55/398 (13%)
Query: 3 YFDNSATTAVNPMVLRTYTDVATKIMGNPSS-----LHGLGTTATRLLEASRRQIAELLG 57
Y D++ATT +L D + G+ ++ H G AT+ E SR ++A L
Sbjct: 24 YLDSAATTQKPQALL----DALSHYYGHGAANVHRAQHLPGALATQAFETSRDKVAAWLN 79
Query: 58 V-DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKT---QGF 113
DS++I FT G T N + G+ + G+ I +S +EH A N W + +
Sbjct: 80 AADSRQIVFTHGATSALNLLAYGLE-HRLEAGDEIAISALEHHA--NLLPWQQLAHRRNL 136
Query: 114 EVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFH 173
+ P+D G + + +LI T +++I ++N +GT QP+ + + ++
Sbjct: 137 HLVVLPLDAHGRIDQDQALQLIGPRTRVLAISQLSNVLGTWQPLPALLAHARAQGALTV- 195
Query: 174 VDAVQAI--GKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLH---GG- 227
VD Q + G+ ++ DF V S+HK +GP GVG++ + + L L H GG
Sbjct: 196 VDGAQGVVHGRQDMQQL---GCDFYVFSSHKLYGPDGVGVLYG-RAQALELLRHWQFGGE 251
Query: 228 ----GQEHN---------WRSTTENLAGIAATSKAL-RLALDDDDFKRQKVRAMKQVILE 273
+ H+ + + T +AG+ L LA D ++ Q +L
Sbjct: 252 MVQLAEYHSASFRPAPLGFEAGTPPIAGVIGLGATLDYLASLDAHAVAAHEASLHQHLLR 311
Query: 274 ELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAG 333
L V V + + +F I GV + H + I + C+ G
Sbjct: 312 GLGDREGVRVLGAPQT---ALASFVIEGVHNADIAHLLTEQGIAVRAGHHCAMPLLKGLG 368
Query: 334 TLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQ 371
A+R+SL N+ +V++F Q
Sbjct: 369 -----------LEGAIRVSLGLYNDSDDVQRFFDALDQ 395
emb|CAA15994| (AL021184) hypothetical protein Rv1464 [Mycobacterium tuberculosis]
Length = 417
Score = 68.7 bits (165), Expect = 8e-11
Identities = 66/239 (27%), Positives = 109/239 (44%), Gaps = 20/239 (8%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
+ Y D+ AT+ VL + T G H L AT E R IA +G D
Sbjct: 30 LAYLDSGATSQRPLQVLDAEREFLTASNGAVHRGAHQLMEEATDAYEQGRADIALFVGAD 89
Query: 60 SQEIFFTSGGTEGDN---WILKGVAFEKRPY-GNHIIVSNVEHPAVKNTAEW---LKTQG 112
+ E+ FT TE N ++L FE+ G+ I+ + +EH A N W + G
Sbjct: 90 TDELVFTKNATEALNLVSYVLGDSRFERAVGPGDVIVTTELEHHA--NLIPWQELARRTG 147
Query: 113 FEVDFAPVDGDGFVIVSELEKLIRDETI-LISIMAVNNEVGTIQPIGEISDLLADKPTIS 171
+ + V DG + +L+ L D+ + +++ +N G + P+ E+ ++
Sbjct: 148 ATLRWYGVTDDGRI---DLDSLYLDDRVKVVAFTHHSNVTGVLTPVSELVSRAHQSGALT 204
Query: 172 FHVDAVQAIGKIPLEAWLTER-VDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGG 227
+DA Q++ P++ L E VDFA S HK GP G+G++ ++ ++ P L GG
Sbjct: 205 V-LDACQSVPHQPVD--LHELGVDFAAFSGHKMLGPNGIGVLYGRRELLAQMPPFLTGG 260
pir||JC4557 capreomycin acetyltransferase (EC 2.3.1.-) - Streptomyces capreolus
>gi|1223838 (U13077) capreomycin acetyltransferase
[Streptomyces capreolus] >gi|1586532|prf||2204233A
capreomycin acetyltransferase [Streptomyces capreolus]
Length = 359
Score = 66.7 bits (160), Expect = 3e-10
Identities = 80/313 (25%), Positives = 135/313 (42%), Gaps = 47/313 (15%)
Query: 45 LEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYG--NHIIVSNVEH---- 98
LEA A L+G E+ FT T +W+ AF+ P G + ++V+ VE+
Sbjct: 28 LEAGYGVFASLMGAHPDEVAFTDSATR--SWL---AAFDAVPLGPGDRVLVTEVEYGGNA 82
Query: 99 -PAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPI 157
P + E GFEV P D G V V L +L+ + L+S++ G + P+
Sbjct: 83 IPILHRARE----VGFEVVTIPSDAVGQVDVEALRELVDERVKLVSLVHAPTNGGLVNPV 138
Query: 158 GEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSA---HKFHGPRGVGIVVA 214
E++ + + +DA Q++G++P+ A + + ++SA GPRG G++V
Sbjct: 139 REVASAAHEVGALVL-LDACQSLGQLPVRA---DELGVDIISATGRKWLRGPRGTGVLVV 194
Query: 215 --KKGKRLTPL---LHGG---GQE-----------HNWRSTTENLAGIAATSKALRLALD 255
RL P LH G G E W ++ + G+ A A R ALD
Sbjct: 195 CRSAADRLRPRLVDLHSGEWVGPEEVKLREDARVYELWETSVADRLGLIA---AARYALD 251
Query: 256 -DDDFKRQKVRAMKQVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQH 314
D +VR+ + + L + V V + I+TF + G V +H
Sbjct: 252 LGIDAIAAEVRSRAERLRAGLREVPGVEV-RDIGARLSGIVTFTVEGRDPVAVRDELARH 310
Query: 315 EIYISTTSACSSK 327
++ ++T+ S++
Sbjct: 311 DVVVTTSHLTSTR 323
pir||S72761 nitrogen fixation protein homolog nifS - Mycobacterium leprae
>gi|466883 (U00013) nifS; B1496_C2_193 [Mycobacterium
leprae] >gi|2398703|emb|CAB16168| (Z99125) nifS-like
protein [Mycobacterium leprae]
Length = 418
Score = 61.3 bits (146), Expect = 1e-08
Identities = 78/311 (25%), Positives = 130/311 (41%), Gaps = 35/311 (11%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGVD 59
+ Y D+ AT+ VL + G H L AT E R IA +G
Sbjct: 30 LAYLDSGATSQRPVQVLDAEREFLVTSNGAVHRGAHQLMEEATDAYERGRVDIAAFIGAA 89
Query: 60 SQEIFFTSGGTEGDN---WILKGVAFE--KRPYGNHIIVSNVEHPAVKNTAEWLKTQ--- 111
+ E+ FT TE N ++ FE G+ I+ + +EH A N W +
Sbjct: 90 ADELVFTKNATESLNLVSYVFGDNRFEGTSGDGGDVIVTTELEHHA--NLIPWQELARRI 147
Query: 112 GFEVDFAPVDGDGFVIVSELEKLIRDETI-LISIMAVNNEVGTIQPIGEISDLLADKPTI 170
G + + V DG + +L+ L DE + +++ +N G + P+ E+ + +
Sbjct: 148 GATLRWYGVTDDGQI---DLDSLQLDERVKVVAFSHHSNVTGAVAPVRELVARAKEVGAL 204
Query: 171 SFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGG 228
+ +DA Q++ P++ VDFA S HK GP G+G++ A++ + P L GG
Sbjct: 205 TV-LDACQSVPHQPVDLHGLG-VDFAAFSGHKMLGPNGIGVLYARRELLSVMPPFLTGGS 262
Query: 229 --QEHNWRSTT------ENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRK 280
+ STT AG TS+ + LA R + + ++ +E H +
Sbjct: 263 MIETVTMESTTYAPAPQRFEAGTPMTSQVVGLA--------AAARYLDAIGMKAVEAHER 314
Query: 281 VHVFSKVENFA 291
V + VE +
Sbjct: 315 ELVAAAVEGLS 325
pir||G64117 nitrogen fixation protein (nifS) homolog - Haemophilus influenzae
(strain Rd KW20) >gi|1574801 (U32813) H. influenzae
predicted coding region HI1343 [Haemophilus influenzae
Rd]
Length = 238
Score = 60.5 bits (144), Expect = 2e-08
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 8/150 (5%)
Query: 85 RPYGNHIIVSNVEHPA--VKNTAEWLKTQ---GFEVDFAPVDGDGFVIVSELEKLIRDET 139
+ + NH I S + V N W +T G ++ P+ + + + L + ++T
Sbjct: 25 KKFSNHSIASTSKWLVHQVANFVTWHETAKKCGAKIRVLPILDNWLIDENVLISTLSEKT 84
Query: 140 ILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLS 199
L+++ V+N GT QPI + L+ VDA QAI I ++ + DF S
Sbjct: 85 KLVALNFVSNVTGTEQPIKRLIQLIRKHSHALVLVDAAQAISHIKIDLQDLD-ADFLAFS 143
Query: 200 AHKFHGPRGVGIVVAKKG--KRLTPLLHGG 227
AHK +GP G+G++ K +L PL GG
Sbjct: 144 AHKIYGPNGLGVLTGKLTALSQLQPLFFGG 173
sp|Q49420|NISH_MYCGE NIFS-LIKE PROTEIN >gi|1361731|pir||B64237 nitrogen fixation protein
nifS homolog - Mycoplasma genitalium (SGC3) >gi|3844918
(U39715) nitrogen fixation protein (nifS) [Mycoplasma
genitalium]
Length = 408
Score = 59.3 bits (141), Expect = 5e-08
Identities = 65/239 (27%), Positives = 96/239 (39%), Gaps = 24/239 (10%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATKIMGNPSSLHG-LGTTATRLLEASRRQIAELLGVDS 60
I FDN+AT+ +V + NP + + + ++E +R +A+
Sbjct: 25 INFDNAATSIALDVVAEASKEYYQYFCVNPHNKNPEINQKLIAIIEETRDLLAKFFNAKK 84
Query: 61 QEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
EI FTS TE N G++ + + II+ EH A N W V+ A
Sbjct: 85 NEIIFTSSATESLNLFAFGLSSLVKS-NDEIILKEDEHAA--NVFPW-------VNLAKE 134
Query: 121 DGDGFVIVSELE---------KLIRDETILISIMAVNNEVGTIQPIGEISDLLAD-KPTI 170
+ I+ + K T L+ I A +N G +IS L P
Sbjct: 135 NKAKLKIIKKTPNKSWTDAFLKACTPSTKLLVITATSNLFGNSIDYEKISKHLKKISPNS 194
Query: 171 SFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVVAKK--GKRLTPLLHGG 227
VDAVQA+ ++ + +DF S HKF+GP G+GI K RL P GG
Sbjct: 195 FIVVDAVQAVPHHKIDI-TSANIDFLTFSTHKFYGPTGLGIAFIKSELQSRLKPFKLGG 252
gi|2622218 (AE000881) glutamate decarboxylase [Methanobacterium
thermoautotrophicum]
Length = 363
Score = 57.8 bits (137), Expect = 1e-07
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 7 SATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASR-RQIAELLGVDSQEIFF 65
S T+ +P+ R Y D +G+P G TR LE+ + ELL
Sbjct: 11 SMCTSSHPLARRVYCDFLESNLGDPGLFRG-----TRELESGVIGMLGELLSEPDAAGHI 65
Query: 66 TSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGF 125
+GGTE + ++ IIV H + + A+ L G + A +D D
Sbjct: 66 ITGGTEANLMAMRAARNMAGAEKPEIIVPKSAHFSFRKAADIL---GLRLREAELDQDYR 122
Query: 126 VIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
V V + KLI + T+ + +A E+G I P+ E+S++ D+ I H+DA
Sbjct: 123 VDVESVRKLISENTVAVVGVAGTTELGRIDPVEELSEICLDE-DIHLHIDA 172
gb|AAF22900.1|AC006932_17 (AC006932) T27G7.17 [Arabidopsis thaliana]
Length = 526
Score = 57.0 bits (135), Expect = 3e-07
Identities = 62/249 (24%), Positives = 106/249 (41%), Gaps = 26/249 (10%)
Query: 1 MIYFDNSATTAVNPMVLRTYTDVATKIMGNPS-SLHGLGTTATRLLEASRRQIAELLGV- 58
++Y D++AT+ VL + N +H L AT E +R+++A +
Sbjct: 73 LVYLDSAATSQKPAAVLDALQNYYEFYNSNVHRGIHYLSAKATDEFELARKKVARFINAS 132
Query: 59 DSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEW---LKTQGFEV 115
DS+EI FT TE N + G+ +I++ EH + W + G +
Sbjct: 133 DSREIVFTRNATEAINLVAYSWGLSNLKPGDEVILTVAEHHSC--IVPWQIVSQKTGAVL 190
Query: 116 DFAPVDGDGFVIVSELEKLIRDETILISIMAVNNE------------VGTIQPIGEISDL 163
F ++ D +++L +LI +T L+++ V+N + + PI EI +
Sbjct: 191 KFVTLNEDEVPDINKLRELISPKTKLVAVHHVSNVLEGKYLTYVSFCLASSLPIEEIV-V 249
Query: 164 LADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHK---FHGPRGVGIVVAKKG--K 218
A VDA Q++ + ++ DF V S+HK GP G+G + K
Sbjct: 250 WAHDVGAKVLVDACQSVPHMVVDVQKL-NADFLVASSHKVGIMCGPTGIGFLYGKSDLLH 308
Query: 219 RLTPLLHGG 227
+ P L GG
Sbjct: 309 SMPPFLGGG 317
gi|2649253 (AE001012) group II decarboxylase [Archaeoglobus fulgidus]
Length = 488
Score = 55.4 bits (131), Expect = 8e-07
Identities = 55/186 (29%), Positives = 82/186 (43%), Gaps = 21/186 (11%)
Query: 50 RQIAELLGVDSQEIF-FTSGGTEGDNWILKGVA--FEKRPYGN---HIIVSNVEHPAVKN 103
R + LL D + + FT GGTE LK F K GN I++ HPA
Sbjct: 108 RMASSLLNGDEEVVGNFTYGGTESIMLALKAAREKFRKEEGGNVVPEIVLPATAHPAFWK 167
Query: 104 TAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDL 163
+AE+L G A +D + V +++L+ D+T +I A N G + I +SD+
Sbjct: 168 SAEYL---GMRCLRAKLDDELRADVETVKELVGDKTAMIVGSAPNYPFGVVDDIKALSDI 224
Query: 164 LADKPTISFHVDAVQAIGKIPLEAWLTERV---DFAVLSAHK----FH----GPRGVGIV 212
D + HVDA +P L E++ DF+V H FH PRG ++
Sbjct: 225 AVD-GKLWLHVDACLGGFHLPFFRELGEKIPDFDFSVEGVHSISADFHKYGLSPRGASVI 283
Query: 213 VAKKGK 218
+ + K
Sbjct: 284 LYRNAK 289
dbj|BAA17725| (D90908) isopenicillin N epimerase [Synechocystis sp.]
Length = 401
Score = 55.0 bits (130), Expect = 1e-06
Identities = 50/179 (27%), Positives = 83/179 (45%), Gaps = 19/179 (10%)
Query: 43 RLLEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVK 102
+L+ R+ + E VD I T T G + +L G+ ++K G+ I++++ EHP +
Sbjct: 62 QLIAQLRQALGETFNVDPNTITITDNVTTGCDIVLWGIDWQK---GDEILLTDCEHPGII 118
Query: 103 NTAEWLKTQ-GFEVDFAPV-----DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQP 156
+ + + G F PV GD + L + +T L+ + + G + P
Sbjct: 119 AIVQAIAARFGVTYRFFPVADTLNQGDAAAV---LVNHLGPKTRLVILSHLLWNTGQVLP 175
Query: 157 IGEISDLL----ADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHK-FHGPRGVG 210
+GEI + D P + VD Q+ G +PL+ E VD+ + HK F GP GVG
Sbjct: 176 LGEIMAVCRRHQGDYP-VRVLVDGAQSAGSLPLDFSRLE-VDYYAFTGHKWFAGPAGVG 232
gi|2648533 (AE000964) group II decarboxylase [Archaeoglobus fulgidus]
Length = 367
Score = 54.7 bits (129), Expect = 1e-06
Identities = 42/171 (24%), Positives = 81/171 (46%), Gaps = 8/171 (4%)
Query: 6 NSATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFF 65
+S T +P+ + + +G+P G +L+ R I ++L ++ +
Sbjct: 22 SSMCTVPHPVAVEAHRMFIETNLGDPGIFRGTVELEAKLM----RLIGDILHCETPAGYI 77
Query: 66 TSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGF 125
SGGTE + ++ ++ +I++ H + + + L G ++ A VD +
Sbjct: 78 CSGGTEANIQGIRAARNVQKKENPNIVIPKTAHFSFEKIGDIL---GVKIKRAGVDEEYK 134
Query: 126 VIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
V V ++E L+ + T+ I +A E+G I PI E+S LA++ + HVDA
Sbjct: 135 VDVGQVEDLMDENTVAIVGIAGTTELGQIDPIVELSK-LAEERQVELHVDA 184
sp|P42253|YCBU_BACSU HYPOTHETICAL 40.8 KD PROTEIN IN PCP-LMRB INTERGENIC REGION
PRECURSOR (ORF21) >gi|2415717|dbj|BAA22227| (AB000617)
YcbU [Bacillus subtilis] >gi|2632552|emb|CAB12060|
(Z99105) similar to NifS protein homolog [Bacillus
subtilis]
Length = 370
Score = 53.1 bits (125), Expect = 4e-06
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 15/175 (8%)
Query: 46 EASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYGN-HIIVSNVEHPAVKNT 104
E +R + A+L+G + E+ ++ L VA +G H++ ++++ PAV +
Sbjct: 59 EFARNEFAKLIGAEPDEVAIVPSVSDA----LVSVASYLTAFGKKHVVYTDMDFPAVPHV 114
Query: 105 AEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLL 164
W + V P DG + + + E I DET+L + V+ G +Q I I+++
Sbjct: 115 --WQAHSDYTVSVIP-SIDGVLPLEQYETHISDETVLTCVPHVHYRDGYVQDIKAIAEIS 171
Query: 165 ADKPTISFHVDAVQAIGKIPLEA--WLTERVDFAVLSAHKF-HGPRGVGIVVAKK 216
K ++ F VDA Q+ G IP++ W VD K+ G GV + +K
Sbjct: 172 QRKGSLLF-VDAYQSAGHIPIDVKEW---GVDMLAAGTRKYLLGIPGVAFLYVRK 222
gi|533117 (U13077) capreomycin acetyltransferase [Streptomyces capreolus]
Length = 289
Score = 52.7 bits (124), Expect = 5e-06
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 31/239 (12%)
Query: 112 GFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTIS 171
GFEV P D G V V L +L+ + L+S++ G + P+ E++ + +
Sbjct: 23 GFEVVTIPSDAVGQVDVEALRELVDERVKLVSLVHAPTNGGLVNPVREVASAAHEVGALV 82
Query: 172 FHVDAVQAIGKIPLEAWLTERVDFAVLSA---HKFHGPRGVGIVVA--KKGKRLTPL--- 223
+DA Q++G++P+ A + + ++SA GPRG G++V RL P
Sbjct: 83 L-LDACQSLGQLPVRA---DELGVDIISATGRKWLRGPRGTGVLVVCRSAADRLRPRLVD 138
Query: 224 LHGG---GQE-----------HNWRSTTENLAGIAATSKALRLALD-DDDFKRQKVRAMK 268
LH G G E W ++ + G+ A A R ALD D +VR+
Sbjct: 139 LHSGEWVGPEEVKLREDARVYELWETSVADRLGLIA---AARYALDLGIDAIAAEVRSRA 195
Query: 269 QVILEELEKHRKVHVFSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSK 327
+ + L + V V + I+TF + G V +H++ ++T+ S++
Sbjct: 196 ERLRAGLREVPGVEV-RDIGARLSGIVTFTVEGRDPVAVRDELARHDVVVTTSHLTSTR 253
gb|AAD19000| (AE001667) NifS-related Aminotransferase [Chlamydia pneumoniae]
Length = 384
Score = 51.5 bits (121), Expect = 1e-05
Identities = 76/350 (21%), Positives = 135/350 (37%), Gaps = 20/350 (5%)
Query: 40 TATRLLEASRRQIAELLGVDSQEIF-FTSGGTEGDNWILKGVA-----FEKRPYGNHIIV 93
+A +L E + I +L+G+ IF F + +L + F+ R NHII+
Sbjct: 44 SALKLAEKTEESIRQLVGLKDSHIFRFVPHFPHVVHIVLAALVENLSMFQGR---NHIIL 100
Query: 94 SNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGT 153
+ + N+ + G D+ V+ +G ++ +L + + ++L S+ A + G
Sbjct: 101 PAHDQQLLINSLCRHQGLGTTYDWVTVNHEGRIVEEQLIETLSPRSLLFSLSAAHGLTGV 160
Query: 154 IQPIGEISDLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKFHGPRGVGIVV 213
IQP+ + L D+ I H+D +G+ PL + D S+ G +G +
Sbjct: 161 IQPLDPLLSLCKDR-RILLHLDISDILGRAPLTPEILN-ADIITFSSAALGGMGSIGGIF 218
Query: 214 AKKGKRLTPLLHGGGQEHNWRSTTENLAGIAATSKALRL-ALDDDDFKRQKVRAMKQVIL 272
+K L + H S + T+ R+ AL F + K++I
Sbjct: 219 IRKS--LERVFSSWFPPHTSASLCFSAVAAMQTACEERISALPLFTFHTSNL--CKKLIQ 274
Query: 273 EELEKHRKVHV-FSKVENFAPNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAA 331
E + + FS+V+N PNI+ I + E + Q IY S +
Sbjct: 275 ELQSVLPSIQLAFSEVQNRLPNIVVAAIPDIPAESLAFHLHQQGIY---PSLGYERFQPL 331
Query: 332 AGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQELEKVSG 381
A L + L SA+ SL + E + + L + G
Sbjct: 332 AQVLQNCGISPFLCHSALHFSLTERSKDLEFSKLARAMHDAIKHLTPLLG 381
emb|CAA22532.1| (AL034563) hypothetical 48.1 kd protein. [Schizosaccharomyces
pombe]
Length = 392
Score = 50.8 bits (119), Expect = 2e-05
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 12/192 (6%)
Query: 45 LEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNT 104
+EA+R ++A+L+G DS I F + T+G + +L +E+ + I++ NV +P
Sbjct: 63 MEATRNEVAKLIGADSSNIVFCNSATDGISTVLLTFPWEQ---NDEILMLNVAYPTCTYA 119
Query: 105 AEWLKTQ---GFEVDFAPVDGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEIS 161
A++ K Q +V V+ D + + E+E+ I + + + I E
Sbjct: 120 ADFAKNQHNLRLDVIDVGVEIDEDLFLKEVEQRFLQSKPRAFICDILSSMPVILFPWEKV 179
Query: 162 DLLADKPTISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHKF-HGPRGVGIV-VAKKGKR 219
L K I +D AIG IP+ + DF +AHK+ + P ++ V+ K
Sbjct: 180 VKLCKKYNIVSIIDGAHAIGHIPMNLANVD-PDFLFTNAHKWLNSPAACTVLYVSAKNHN 238
Query: 220 L---TPLLHGGG 228
L PL +G G
Sbjct: 239 LIEALPLSYGYG 250
gi|3820527 (AF061964) L-cysteine/cystine lyase C-DES [Synechocystis PCC6714]
Length = 393
Score = 50.4 bits (118), Expect = 3e-05
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 43 RLLEASRRQIAELLGVDSQEIFFTSGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVK 102
+L+ R+ +AE VD I T T G + +L G+ + + G+ I++++ EHP +
Sbjct: 62 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQ---GDEILLTDCEHPGII 118
Query: 103 NTAEWLKTQ-GFEVDFAPV-----DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQP 156
+ + + G F PV GD + L + +T L+ + + G + P
Sbjct: 119 AIVQAIAARFGITYRFFPVAATLNQGDAAAV---LANHLGPKTRLVILSHLLWNTGQVLP 175
Query: 157 IGEISDLLADKP---TISFHVDAVQAIGKIPLEAWLTERVDFAVLSAHK-FHGPRGVG 210
+ EI + + VD Q+ G +PL+ E VD+ + HK F GP GVG
Sbjct: 176 LAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLE-VDYYAFTGHKWFAGPAGVG 232
dbj|BAA81279.1| (AP000064) 454aa long hypothetical glutamate decarboxylase
[Aeropyrum pernix]
Length = 454
Score = 47.6 bits (111), Expect = 2e-04
Identities = 47/179 (26%), Positives = 79/179 (43%), Gaps = 24/179 (13%)
Query: 57 GVDSQEIFFTSGGTEGDNWILKGVAFEK--RPYGNH----IIVSNVEHPAVKNTAEWLKT 110
GV+ T GGTE + IL +A + R G I+ HP+V+ A +L
Sbjct: 77 GVEGVVGTVTYGGTE--SIILAAMAAREWYRSLGGSRTPGIVAPQTVHPSVRKAARYL-- 132
Query: 111 QGFEVDFAPVD-GDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPT 169
G + APVD G V + L L+ D T ++ + A N GT+ + +++ L+ +
Sbjct: 133 -GMRLSIAPVDPGSKRVDIDSLVSLVDDRTAMVVVSAPNYPYGTVDDVRSVAEALSSQ-R 190
Query: 170 ISFHVDAVQAIGKIPLE----------AWLTERVDFAVLSAHKF-HGPRGVGIVVAKKG 217
+ HVDA +P A+ E V + HK+ + P+G +++ + G
Sbjct: 191 VWLHVDACVGGFILPFMRELGLYSGAFAFDVEGVYSVSMDLHKYGYSPKGASVLLFRDG 249
emb|CAB39873.1| (AL049497) putative aminotransferase [Streptomyces coelicolor]
Length = 476
Score = 46.5 bits (108), Expect = 4e-04
Identities = 89/409 (21%), Positives = 150/409 (35%), Gaps = 64/409 (15%)
Query: 14 PMVLRTYTDVATKIMGNPSSLHGLG---TTATRLLEASRRQIAELLGV-DSQEIFFTSGG 69
P + R + DVA S G G +T L E +R +A LG D ++ FT
Sbjct: 40 PALQRVWDDVAAYAPYYGSVHRGAGYLSQLSTDLFENARGTVAGFLGCRDDDQVVFTRST 99
Query: 70 TEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFVIVS 129
T+ N + + P + V EH A L + +V + V
Sbjct: 100 TDSLNLLAAAL-----PAHCRVFVFETEHHA-----SLLPWRAADVTYLDAPRTPAEAVE 149
Query: 130 ELEKLIRDET----ILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPL 185
LE+ + L+ + +N G + P+ E++ A +DA Q P+
Sbjct: 150 TLERALAAREPYGPALVCVTGASNVTGELWPVRELA-AAAHAHGARIVLDAAQLAPHHPV 208
Query: 186 EAWLTERVDFAVLSAHKFHGPRGVGIVVAKKG--KRLTPLLHGGGQEHN----------- 232
+ VD+ S HK + P G G++ + + P L GGG +
Sbjct: 209 SVRDLD-VDWVAFSGHKLYAPFGSGVLAGRADWLREAEPYLAGGGASRSVSRRADGGVDV 267
Query: 233 -WRST-------TENLAG---IAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKV 281
W + + N+ G IA+ KAL A D R++ K + E L + +V
Sbjct: 268 QWHDSAARHEAGSPNVIGVYAIASACKALTEAGFDTLVAREEYLIRK--VREGLAEVPEV 325
Query: 282 HVFSKVENFAP--NILTFGIRGVRGEVVVHA-------------FEQHEIYISTTSACSS 326
V S + AP +L+F + G A F H + + T
Sbjct: 326 RVLSLFGDDAPRVGVLSFVVEGWNSSHFAAALSAEYGIGVRDGLFCAHPL-VRTLLGSDP 384
Query: 327 KKNAAAGTLVAMNVPSKLATSAVRISLDSTNNMAEVEQFLTVFRQIYQE 375
+ G A P + + +A+R+S + VE+F++ R++ +
Sbjct: 385 QTQGECGAPEA--APGEKSLNAIRVSFGAGTPDEHVERFVSAVRELVSD 431
dbj|BAA30034| (AP000004) 383aa long hypothetical protein [Pyrococcus horikoshii]
Length = 383
Score = 44.5 bits (103), Expect = 0.001
Identities = 58/222 (26%), Positives = 91/222 (40%), Gaps = 15/222 (6%)
Query: 7 SATTAVNPMVLRTYTDVATKIMGNPSSLHGLGTTATRLLEASRRQIAELLGVDSQEIFFT 66
S T + + + YT + +G+P GL ++ E I++LL ++
Sbjct: 35 SMCTMPHDLAIEVYTKYIDRNLGDP----GLHPGTRKIEEEVIEMISDLLHLEKGHGHIV 90
Query: 67 SGGTEGDNWILKGVAFEKRPYGNHIIVSNVEHPAVKNTAEWLKTQGFEVDFAPVDGDGFV 126
SGGTE + ++ +I+ H + E L G ++ +A ++ D V
Sbjct: 91 SGGTEANILAVRAFRNLSDVEKPELILPKSAHFSFIKAGEML---GVKLVWAELNPDYTV 147
Query: 127 IVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDAVQAIGKIPLE 186
V ++E I D TI I +A +G + I +SDL D I HVDA IP
Sbjct: 148 DVRDVEAKISDNTIGIVGIAGTTGLGVVDDIPALSDLARDY-GIPLHVDAAFGGFVIPFA 206
Query: 187 AWL-TERVDFAVLSAHKFHGPRGVGIVVAKKGKRLTPLLHGG 227
L E DF K G + + I K G + P+ GG
Sbjct: 207 KELGYELPDF----DFKLKGVQSITIDPHKMG--MAPIPAGG 242
gi|3801005 (AF100673) similar to pyridoxal-dependent decarboxylases conserved
domain (Pfam: pyridoxal_deC.hmm. score: 76.39)
[Caenorhabditis elegans]
>gi|5532489|gb|AAD44756.1|AF144639_1 (AF144639)
sphingosine-1-phosphate lyase [Caenorhabditis elegans]
Length = 552
Score = 43.4 bits (100), Expect = 0.003
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 66 TSGGTEGDNWILKGVAFEKRPYG---NH--IIVSNVEHPAVKNTAEWLKTQGFEVDFAPV 120
TSGGTE + I+ ++ R + H I+ H A A G + PV
Sbjct: 202 TSGGTE--SIIMACFSYRNRAHSLGIEHPVILACKTAHAAFDKAAHLC---GMRLRHVPV 256
Query: 121 DGDGFVIVSELEKLIRDETILISIMAVNNEVGTIQPIGEISDLLADKPTISFHVDA 176
D D V + E+E+LI ++ A N GTI PI EI+ L K I HVDA
Sbjct: 257 DSDNRVDLKEMERLIDSNVCMLVGSAPNFPSGTIDPIPEIAK-LGKKYGIPVHVDA 311
gb|AAF13801.1|AF130813_1 (AF130813) NifS protein homolog [Buchnera aphidicola]
Length = 68
Score = 43.0 bits (99), Expect = 0.004
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 2 IYFDNSATTAVNPMVLRTYTDVATK--IMGNPSSL-HGLGTTATRLLEASRRQIAELLGV 58
IY D +ATT + P+V++ T GNP+S H G A ++ +R QIAEL+
Sbjct: 5 IYLDYAATTPMEPLVIKNMIKFLTLDGTFGNPASRSHQFGWKAEESVDIARNQIAELINA 64
Query: 59 DSQE 62
DS+E
Sbjct: 65 DSRE 68
gi|2121294 (AF000118) tRNA splicing protein [Candida maltosa]
Length = 147
Score = 43.0 bits (99), Expect = 0.004
Identities = 37/145 (25%), Positives = 63/145 (42%), Gaps = 6/145 (4%)
Query: 222 PLLHGGGQEHNWRSTTENLAGIAATSKALRLALDDDDFKRQKVRAMKQVILEELEKHRKV 281
P++ GGGQE RS T +A +A RL + F ++ + + + L
Sbjct: 2 PIITGGGQERGLRSGTLAPPLVAGFGEAARLMKQESAFDKKHIEKLSTKLKNGLLSIPST 61
Query: 282 HVFSKVENFA---PNILTFGIRGVRGEVVVHAFEQHEIYISTTSACSSKKNAAAGTLVAM 338
F+ N A P + + GE ++ A + +I +S+ SAC+S + L A+
Sbjct: 62 Q-FNGCNNPAYQYPGCVNVSFAYIEGESLLMALK--DIALSSGSACTSASLEPSYVLHAL 118
Query: 339 NVPSKLATSAVRISLDSTNNMAEVE 363
LA S++R + AEV+
Sbjct: 119 GADDALAHSSIRFGIGRFTTEAEVD 143
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100220638
Number of Sequences: 457798
Number of extensions: 4069719
Number of successful extensions: 11419
Number of sequences better than 1.0e-02: 98
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 11084
Number of HSP's gapped (non-prelim): 103
length of query: 381
length of database: 140,871,481
effective HSP length: 59
effective length of query: 322
effective length of database: 113,861,399
effective search space: 36663370478
effective search space used: 36663370478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 96 (41.8 bits)