BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ndrI (1005 kb reverse) BIO06.05
(140 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q48709|NRDI_LACLC NRDI PROTEIN >gi|1222681|emb|CAA63373|... 271 2e-72
emb|CAB70606.1| (Y18363) ribonucleotide reductase-like (Nrd... 85 3e-16
emb|CAB06244| (Z83866) nrdI [Mycobacterium tuberculosis] 74 6e-13
sp|P75460|NRDI_MYCPN NRDI PROTEIN >gi|2146386|pir||S73839 M... 72 2e-12
gb|AAD45274.1|AF152114_2 (AF152114) NrdI protein [Mycoplasm... 72 2e-12
emb|CAB38641.1| (AJ133495) NRD1 [Staphylococcus aureus] 71 4e-12
gb|AAD41035.1|AF112535_2 (AF112535) NrdI [Corynebacterium g... 70 1e-11
dbj|BAA16538| (D90891) similar to [SwissProt Accession Numb... 66 1e-10
sp|Q47415|NRDI_ECOLI NRDI PROTEIN >gi|2121210|pir||S70890 h... 66 1e-10
emb|CAA70764| (Y09572) NrdI protein [Corynebacterium ammoni... 66 2e-10
sp|P47472|NRDI_MYCGE NRDI PROTEIN >gi|1361639|pir||D64225 h... 66 2e-10
sp|Q56109|NRDI_SALTY NRDI PROTEIN >gi|1050838|emb|CAA51698|... 61 6e-09
sp|P50618|NRDI_BACSU NRDI PROTEIN >gi|1262335|emb|CAA92809|... 54 6e-07
emb|CAB13899| (Z99114) similar to hypothetical proteins [Ba... 46 1e-04
sp|Q48709|NRDI_LACLC NRDI PROTEIN >gi|1222681|emb|CAA63373| (X92690) homologous to ORF2
in nrdEF operons of E.coli and S.typhimurium
[Lactococcus lactis]
Length = 140
Score = 271 bits (686), Expect = 2e-72
Identities = 131/140 (93%), Positives = 137/140 (97%)
Query: 1 MKLAYFSVTGQTRRFVSKTNLPNVEISPDDDIEMNEPFLLITPSYAEESPTVSKSIDVMD 60
MKLAYFSVTGQTRRFVSKT+LPNVEI+PDDD+EM+EPFLLITPSYAEESPTVSKSIDVMD
Sbjct: 1 MKLAYFSVTGQTRRFVSKTDLPNVEITPDDDLEMDEPFLLITPSYAEESPTVSKSIDVMD 60
Query: 61 PVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADVAA 120
VFDFMAYNDNYKHC GIIGTGNRNFAGIYIFTAKE+SAKYQIPLLYDFEFNGTPADVAA
Sbjct: 61 SVFDFMAYNDNYKHCRGIIGTGNRNFAGIYIFTAKEVSAKYQIPLLYDFEFNGTPADVAA 120
Query: 121 VEKLATQLDKGAKVTFKNPL 140
VEKLA QLD+GAKVTFKNPL
Sbjct: 121 VEKLAAQLDQGAKVTFKNPL 140
emb|CAB70606.1| (Y18363) ribonucleotide reductase-like (Nrd-like) protein
[Streptococcus dysgalactiae]
Length = 142
Score = 85.0 bits (207), Expect = 3e-16
Identities = 44/138 (31%), Positives = 78/138 (55%), Gaps = 14/138 (10%)
Query: 1 MKLAYFSVTGQTRRFVSKTNLP------------NVEISPDDDIEMNEPFLLITPSYAEE 48
+ + + S++G T FV + +L N++ + + E F+ + P+Y E
Sbjct: 4 LTIVFISLSGNTLSFVKRLSLYLTENHECHVKQINIKDLKHETFPVEEDFVAMLPTYLEG 63
Query: 49 SPTV-SKSIDVM-DPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLL 106
+ S ++++ +P+ DF+A +DNYKHC+GIIG+GN+NF Y TAK+ + ++ P+L
Sbjct: 64 GNGIDSGEVEILTNPLGDFIAAHDNYKHCMGIIGSGNKNFNNQYCLTAKQYAKRFGFPML 123
Query: 107 YDFEFNGTPADVAAVEKL 124
DFE GT D+ + K+
Sbjct: 124 GDFELRGTNDDIERLAKI 141
emb|CAB06244| (Z83866) nrdI [Mycobacterium tuberculosis]
Length = 150
Score = 73.7 bits (178), Expect = 6e-13
Identities = 45/122 (36%), Positives = 61/122 (49%), Gaps = 3/122 (2%)
Query: 3 LAYFS-VTGQTRRFVSKTNLPNVEISPDDDIEMNEPFLLITPSYA--EESPTVSKSIDVM 59
L YFS V+ T RFV K +P I IE++EP++LI P+Y +P + V
Sbjct: 8 LVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLDAGGYVP 67
Query: 60 DPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADVA 119
V F+ + N G+I GN NF + + +S K +P LY FE GT DVA
Sbjct: 68 KQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVA 127
Query: 120 AV 121
AV
Sbjct: 128 AV 129
sp|P75460|NRDI_MYCPN NRDI PROTEIN >gi|2146386|pir||S73839 MG230 homolog F10_orf153 -
Mycoplasma pneumoniae (SGC3) (ATCC 29342) >gi|1674207
(AE000050) Mycoplasma pneumoniae, MG230 homolog, from M.
genitalium [Mycoplasma pneumoniae]
Length = 153
Score = 72.2 bits (174), Expect = 2e-12
Identities = 42/134 (31%), Positives = 66/134 (48%), Gaps = 5/134 (3%)
Query: 3 LAYFS-VTGQTRRFVSKTNLPN--VEISPDDDIEMNEPFLLITPSYAEESPTVSKSIDVM 59
+ YFS ++ T RF+ K + + ++ D+ IE+N+ ++L P+Y+ S ++
Sbjct: 22 VVYFSSISNNTHRFIEKLEFEHTRIPVNLDEQIEVNQEYVLFCPTYSGGGEYTSGAVPKQ 81
Query: 60 DPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADVA 119
V F+ N C G+I +GN NF + LS K +PLLY FE GT DV
Sbjct: 82 --VIHFLNNKHNRDLCRGVISSGNTNFGNTFAIAGPILSKKLNVPLLYQFELLGTKNDVE 139
Query: 120 AVEKLATQLDKGAK 133
V+ + T AK
Sbjct: 140 QVQTIITNFFGKAK 153
gb|AAD45274.1|AF152114_2 (AF152114) NrdI protein [Mycoplasma gallisepticum]
Length = 151
Score = 71.8 bits (173), Expect = 2e-12
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 1 MKLAYFSVTGQ-TRRFVSKTNLP--NVEISPDDDIEMNEPFLLITPSYAEESPTVSKSID 57
M++ YFS T + T++F K LP + I P ++IE++ ++LI P+YA S+
Sbjct: 18 MRVVYFSSTTENTKKFCDKLGLPATRIPIKPSEEIEVDYDYVLICPTYAGGLDDFKGSVP 77
Query: 58 VMDPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPAD 117
V F+ N +HC+G++ +GN NF + L AK +PLL+ FE GT D
Sbjct: 78 RQ--VIKFLNKVQNREHCVGVVASGNTNFGETFGLAGHVLRAKLHVPLLHVFELIGTKYD 135
Query: 118 VAAVEK 123
V +
Sbjct: 136 EELVRE 141
emb|CAB38641.1| (AJ133495) NRD1 [Staphylococcus aureus]
Length = 132
Score = 71.0 bits (171), Expect = 4e-12
Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 12/120 (10%)
Query: 1 MKLAYFSVTGQTRRFVSKTNLPN-VEISPDDDIE-MNEPFLLITPSYAEESPTVSKSIDV 58
MK+ YFS TG RRF+ +T L N +EI+ ++ +E +NEPF+++T + +V
Sbjct: 1 MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVNEPFIIVTGTIGFG--------EV 52
Query: 59 MDPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADV 118
+PV F+ N Y G+ +GNRN+ + + +S +Y +PLL FE +G DV
Sbjct: 53 PEPVQSFLEVNHQYIR--GVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDV 110
gb|AAD41035.1|AF112535_2 (AF112535) NrdI [Corynebacterium glutamicum]
Length = 148
Score = 69.9 bits (168), Expect = 1e-11
Identities = 45/132 (34%), Positives = 66/132 (49%), Gaps = 5/132 (3%)
Query: 1 MKLAYFS-VTGQTRRFVSKTNLPNVEIS---PDDDIEMNEPFLLITPSYAEE-SPTVSKS 55
M + YFS T T RFV K +LPNV I ++ +++NEP++LITP+Y S T S
Sbjct: 1 MLIVYFSSATDNTHRFVQKLDLPNVRIPLTRVEEPLKINEPYVLITPTYGGGVSMTGENS 60
Query: 56 IDVMDPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTP 115
V V F+ N ++ GN NF + + +S K ++P +Y FE G
Sbjct: 61 RPVPPQVIRFLNDEHNRSFIRAVVAGGNSNFGSDFGLAGEIISKKCKVPYVYRFELMGNE 120
Query: 116 ADVAAVEKLATQ 127
DV+ + TQ
Sbjct: 121 EDVSILRGGLTQ 132
dbj|BAA16538| (D90891) similar to [SwissProt Accession Number P47472]
[Escherichia coli]
Length = 217
Score = 66.3 bits (159), Expect = 1e-10
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 2 KLAYFSVTGQ-TRRFVSKTNLPNVEI--SPDDDIEMNEPFLLITPSYAEESPTVSKSIDV 58
+L YFS + + T+RF+ + LP V I + + I+++EP++LI PSY + V
Sbjct: 84 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGA----V 139
Query: 59 MDPVFDFMAYNDNYKHCL--GIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPA 116
V F+ ND + L G+I +GNRNF Y ++ K +P LY FE GT +
Sbjct: 140 PRQVIRFL--NDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 197
Query: 117 DVAAVEKLATQ 127
D+ V K T+
Sbjct: 198 DIENVRKGVTE 208
sp|Q47415|NRDI_ECOLI NRDI PROTEIN >gi|2121210|pir||S70890 hypothetical protein C -
Escherichia coli >gi|1050471|emb|CAA56185| (X79787) ORFC
[Escherichia coli] >gi|1789029 (AE000352) orf,
hypothetical protein [Escherichia coli]
Length = 136
Score = 66.3 bits (159), Expect = 1e-10
Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 2 KLAYFSVTGQ-TRRFVSKTNLPNVEI--SPDDDIEMNEPFLLITPSYAEESPTVSKSIDV 58
+L YFS + + T+RF+ + LP V I + + I+++EP++LI PSY + V
Sbjct: 3 QLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYILIVPSYGGGGTAGA----V 58
Query: 59 MDPVFDFMAYNDNYKHCL--GIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPA 116
V F+ ND + L G+I +GNRNF Y ++ K +P LY FE GT +
Sbjct: 59 PRQVIRFL--NDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCGVPWLYRFELMGTQS 116
Query: 117 DVAAVEKLATQ 127
D+ V K T+
Sbjct: 117 DIENVRKGVTE 127
emb|CAA70764| (Y09572) NrdI protein [Corynebacterium ammoniagenes]
Length = 144
Score = 65.6 bits (157), Expect = 2e-10
Identities = 41/116 (35%), Positives = 58/116 (49%), Gaps = 4/116 (3%)
Query: 7 SVTGQTRRFVSKTNLPNVEIS---PDDDIEMNEPFLLITPSYAEE-SPTVSKSIDVMDPV 62
SVT T RFV K +LPNV I D+ + +NEP++L+ P+Y S T S V V
Sbjct: 8 SVTDNTHRFVQKLDLPNVRIPLRLKDEPLIVNEPYVLVCPTYGGGVSLTGENSRPVPRQV 67
Query: 63 FDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADV 118
F+ N ++ GN NF + + +SAK ++P +Y FE G DV
Sbjct: 68 IRFLNNEHNRSFIRAVVAGGNSNFGADFGKAGEVISAKCKVPYVYRFEMMGNEDDV 123
sp|P47472|NRDI_MYCGE NRDI PROTEIN >gi|1361639|pir||D64225 hypothetical protein MG230 -
Mycoplasma genitalium (SGC3) >gi|3844833 (U39702) nrdI
protein (nrdI) [Mycoplasma genitalium]
Length = 153
Score = 65.6 bits (157), Expect = 2e-10
Identities = 38/125 (30%), Positives = 60/125 (47%), Gaps = 5/125 (4%)
Query: 3 LAYFS-VTGQTRRFVSKTNLPNVEISPD--DDIEMNEPFLLITPSYAEESPTVSKSIDVM 59
+ YFS ++ T RF+ K + I D I ++ ++LI P+Y+ V ++
Sbjct: 22 IVYFSSISNNTHRFIEKLGFQHKRIPVDITQSITVSNEYVLICPTYSGGGNQVEGAVPKQ 81
Query: 60 DPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADVA 119
V F+ N + C G+I +GN NF + +S K +PLLY FE GT DV
Sbjct: 82 --VIQFLNNKHNRELCRGVIASGNTNFGDTFCLAGTVISKKLNVPLLYQFELLGTKNDVE 139
Query: 120 AVEKL 124
+K+
Sbjct: 140 QTQKI 144
sp|Q56109|NRDI_SALTY NRDI PROTEIN >gi|1050838|emb|CAA51698| (X73226) nrdI [Salmonella
typhimurium]
Length = 136
Score = 60.5 bits (144), Expect = 6e-09
Identities = 38/124 (30%), Positives = 61/124 (48%), Gaps = 7/124 (5%)
Query: 3 LAYFSVTGQ-TRRFVSKTNLP--NVEISPDDDIEMNEPFLLITPSYAEESPTVSKSIDVM 59
L YFS + + T RF+ + LP + ++ + I+++EP++L+ PSY + V
Sbjct: 4 LVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILVVPSYGGGGMAGA----VP 59
Query: 60 DPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADVA 119
V F+ N G+I +GNRNF + ++ K +P LY FE GT D+
Sbjct: 60 RQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVPWLYRFELMGTQRDID 119
Query: 120 AVEK 123
V K
Sbjct: 120 NVRK 123
sp|P50618|NRDI_BACSU NRDI PROTEIN >gi|1262335|emb|CAA92809| (Z68500) YmaA [Bacillus
subtilis] >gi|2634121|emb|CAB13621| (Z99113) similar to
ribonucleoprotein [Bacillus subtilis]
Length = 130
Score = 53.9 bits (127), Expect = 6e-07
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 17/132 (12%)
Query: 1 MKLAYFSVTGQTRRFVSKTNLPNVEISPDDDIEMNEPFLLITPSYAEESPTVSKSIDVMD 60
+++ + S TG +RFV+KT + D+ ++ PF+L+T Y V S
Sbjct: 2 VQIIFDSKTGNVQRFVNKTGFQQIR-KVDEMDHVDTPFVLVT--YTTNFGQVPASTQ--- 55
Query: 61 PVFDFMAYNDNYKHCL-GIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADV- 118
++ + Y H L G+ +GN+ + + +A +S +YQ+P+L+ FE +GT DV
Sbjct: 56 ------SFLEKYAHLLLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVE 109
Query: 119 ---AAVEKLATQ 127
VE++ T+
Sbjct: 110 LFTQEVERVVTK 121
emb|CAB13899| (Z99114) similar to hypothetical proteins [Bacillus subtilis]
>gi|3025638 (AF020713) similar to Bacillus subtilis NrdI
(YmaA) [Bacteriophage SPBc2]
Length = 129
Score = 46.5 bits (108), Expect = 1e-04
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 3 LAYFSVTGQTRRFVS----KTNLPNVEISPDDDIEMNEPFLLITPSYAEESPTVSKSIDV 58
+ Y S TG +RFV + ++ +EI+ DD +N+ F+ IT + +V
Sbjct: 1 MTYESKTGNVKRFVKALQQEFDVEAIEIT--DDTIINQEFIHITYTIGFG--------EV 50
Query: 59 MDPVFDFMAYNDNYKHCLGIIGTGNRNFAGIYIFTAKELSAKYQIPLLYDFEFNGTPADV 118
+ F+ N N G+ +GN+ + Y +LSAK+ PLL FE +GT D+
Sbjct: 51 PERTLSFI--NKNKNKIRGVAVSGNKVWGDNYGLAGDKLSAKFHTPLLLKFELSGTKQDL 108
Query: 119 AAVEKLATQLDK 130
+ + +DK
Sbjct: 109 QKIIQEVQLIDK 120
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.318 0.137 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40650170
Number of Sequences: 457798
Number of extensions: 1717992
Number of successful extensions: 2956
Number of sequences better than 1.0e-02: 14
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2936
Number of HSP's gapped (non-prelim): 14
length of query: 140
length of database: 140,871,481
effective HSP length: 53
effective length of query: 87
effective length of database: 116,608,187
effective search space: 10144912269
effective search space used: 10144912269
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 92 (40.2 bits)