Score E
Sequences producing significant alignments: (bits) Value
emb|CAA04021| (AJ000346) NapC protein [Enterococcus hirae] 393 e-108
gi|207852 (M20189) tet protein [artificial sequence] 197 2e-49
sp|P02982|TCR1_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS... 196 2e-49
gb|AAD19681.1| (AF118810) RK2 tetracycline resistance prote... 195 5e-49
pir||S38656 tetA protein - Pseudomonas aeruginosa >gi|58143... 195 5e-49
gi|1236519 (U46855) tetracycline resistance protein [Clonin... 195 7e-49
pir||YTECR1 tetracycline resistance protein - Escherichia c... 195 7e-49
sp|P02981|TCR3_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS... 195 7e-49
gi|984918 (U35134) tetracycline resistance protein [Cloning... 194 9e-49
gb|AAF10051.1|AE001906_7 (AE001906) tetracycline-efflux tra... 187 2e-46
sp|P02980|TCR2_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS... 176 2e-43
gi|3860032 (AF090987) drug efflux protein TetA [Agrobacteri... 175 5e-43
emb|CAA23880| (V00611) coding sequence [Escherichia coli] >... 175 5e-43
emb|CAA75663| (Y15510) tetracycline resistance efflux prote... 170 2e-41
emb|CAA76069| (Y16103) tetracycline resistance efflux prote... 170 2e-41
sp|P51564|TCR8_PASMU TETRACYCLINE RESISTANCE PROTEIN, CLASS... 169 5e-41
gi|4104705 (AF038993) tetracycline resistance protein [Prot... 166 3e-40
gi|309958 (L06798) class D tetracycline/H+ antiporter [Plas... 166 3e-40
sp|P33733|TCR4_SALOR TETRACYCLINE RESISTANCE PROTEIN, CLASS... 164 9e-40
sp|Q07282|TCR5_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS... 161 8e-39
gb|AAD25095.1|AF133140_2 (AF133140) tetracycline resistance... 160 2e-38
gb|AAC98496.1| (AF071555) tetracycline resistance protein [... 160 2e-38
sp|P51563|TCR7_VIBAN TETRACYCLINE RESISTANCE PROTEIN, CLASS... 159 4e-38
bbs|121867 (S52437) Tet A=40.9 kda class G tetracycline res... 159 4e-38
gb|AAD25063.1|AF121000_10 (AF121000) tetracycline resistanc... 158 9e-38
gb|AAD25538.1|AF133139_2 (AF133139) tetracycline resistance... 156 4e-37
gi|3309049 (AF070999) tetracycline resistance protein [IncQ... 150 3e-35
sp|P39843|BMR2_BACSU MULTIDRUG RESISTANCE PROTEIN 2 (MULTID... 141 8e-33
gi|1124844 (L29404) tetracycline resistance protein [Escher... 139 5e-32
gb|AAF11718.1|AE002050_4 (AE002050) drug transport protein ... 124 1e-27
gb|AAF04096.1|AF188291_2 (AF188291) 12-TMS multidrug efflux... 124 1e-27
sp|P33449|BMR1_BACSU MULTIDRUG RESISTANCE PROTEIN 1 (MULTID... 119 5e-26
gi|153053 (M80252) norA1199 protein [Staphylococcus aureus]... 115 9e-25
bbs|157398 (S74031) NorA {ISP794, quinolone resistance} [St... 113 3e-24
sp|P21191|NORA_STAAU QUINOLONE RESISTANCE NORA PROTEIN >gi|... 113 4e-24
gb|AAD55441.1|AF181656_1 (AF181656) BcDNA.LD28419 [Drosophi... 112 6e-24
dbj|BAA36484.1| (AB019536) NorA [Staphylococcus aureus] 109 3e-23
ref|NP_032272.1|| hippocampus abundant gene transcript 1 >g... 106 4e-22
gb|AAD26811.1|AF119247_1 (AF119247) tetracycline resistance... 101 1e-20
gi|3319438 (AF077539) similar to serine/threonine dehydrata... 96 7e-19
dbj|BAA32779| (AB012083) ITM [Homo sapiens] 93 5e-18
gb|AAC14725| (AF059663) tumor suppressing STF cDNA 5 [Homo ... 93 5e-18
ref|NP_002546.1|| organic cation transporter-like 2 >gi|292... 92 8e-18
gi|3158349 (AF030302) p45-BWR1A [Homo sapiens] 91 2e-17
emb|CAA23425| (V00083) tetracycline resistance [synthetic c... 91 2e-17
dbj|BAA32780| (AB012084) ITM [Mus musculus] 90 3e-17
ref|NP_032793.1|| organic cationic transporter-like 2 >gi|2... 90 3e-17
gi|2583225 (AF028739) multi-membrane spanning polyspecific ... 89 7e-17
gi|3219699 (AF070479) efflux transporter like protein [Homo... 89 9e-17
gi|2583223 (AF028738) imprinted multi-membrane spanning pol... 89 9e-17
gi|1072210 (U40945) coded for by C. elegans cDNA yk74b9.3; ... 89 9e-17
ref|NP_001111.1|| tetracycline transporter-like protein >gi... 86 6e-16
pir||I54353 tetracycline transporter-like protein - human >... 86 6e-16
sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-A... 85 1e-15
emb|CAB73802.1| (AL139078) putative efflux protein [Campylo... 84 2e-15
gi|4193955 (AF113952) multidrug-efflux transporter [Campylo... 84 2e-15
emb|CAA07482| (AJ007367) multi-drug resistance efflux pump ... 82 1e-14
sp|P25744|YCEE_ECOLI HYPOTHETICAL 43.9 KD PROTEIN IN MSYB-H... 82 1e-14
dbj|BAA22257| (AB000617) YceJ [Bacillus subtilis] >gi|26325... 80 3e-14
sp|P77726|YAJR_ECOLI HYPOTHETICAL 49.0 KD PROTEIN IN ABPA-C... 80 3e-14
sp|P40760|YUXJ_BACSU HYPOTHETICAL 39.1 KD PROTEIN IN KAPD-P... 80 3e-14
dbj|BAA75244.1| (AB023657) tetracycline-resistance protein ... 78 1e-13
gb|AAF09843.1|AE001887_3 (AE001887) multidrug-efflux transp... 78 1e-13
gi|3617954 (AF079900) tetracycline efflux protein [Streptom... 78 2e-13
gi|3108177 (AF061335) oxytetracycline exporter [Streptomyce... 78 2e-13
gi|2983666 (AE000729) transporter (major facilitator family... 78 2e-13
sp|P39637|YWFA_BACSU HYPOTHETICAL 44.5 KD PROTEIN IN ROCC-P... 76 7e-13
dbj|BAA88541.1| (AP000969) ESTs C97915(C0113), C26087(C1161... 73 6e-12
emb|CAA04933| (AJ001694) putative membrane protein [Thermot... 73 6e-12
gi|4155704 (AE001538) putative transporter [Helicobacter py... 72 8e-12
emb|CAB02189| (Z80108) hypothetical protein Rv1410c [Mycoba... 72 1e-11
gi|4240426 (AF080235) LanJ [Streptomyces cyanogenus] 71 2e-11
dbj|BAA08793.1| (D50098) multidrug transporter [Bacillus su... 70 3e-11
gb|AAD08227.1| (AE000624) multidrug-efflux transporter [Hel... 69 7e-11
emb|CAB50282.1| (AJ248287) multidrug resistance protein [Py... 68 1e-10
gi|2621135 (AE000800) multidrug transporter homolog [Methan... 68 2e-10
emb|CAB10049| (Z97193) hypothetical protein Rv1877 [Mycobac... 68 2e-10
sp|P31126|YDEE_ECOLI HYPOTHETICAL 42.7 KD PROTEIN IN MARB-D... 68 2e-10
gb|AAF00219.1|AF164961_8 (AF164961) transporter [Streptomyc... 67 3e-10
pir||S44207 hypothetical protein 337 - Coxiella burnetii 67 3e-10
emb|CAA55564| (X78969) orf 337; translated orf similarity t... 67 3e-10
emb|CAB12669| (Z99108) similar to multidrug-efflux transpor... 67 3e-10
sp|P45123|BCR_HAEIN BICYCLOMYCIN RESISTANCE PROTEIN HOMOLOG... 67 3e-10
emb|CAB61602.1| (AL133210) putative export protein [Strepto... 66 6e-10
gi|1813491 (U64313) MsyB [Bacillus firmus] 66 7e-10
pir||G64494 quinolone resistance protein norA homolog - Met... 65 1e-09
emb|CAA22731| (AL035161) putative efflux protein [Streptomy... 63 4e-09
dbj|BAA07390| (D38215) tcr3 [Streptomyces aureofaciens] 63 5e-09
emb|CAB40866.1| (AL049628) putative exporter [Streptomyces ... 62 6e-09
sp|P55705|Y4XM_RHISN HYPOTHETICAL TRANSPORT PROTEIN Y4XM >g... 62 6e-09
emb|CAA85742.1| (Z37515) TetA [synthetic construct] 62 8e-09
gb|AAF12391.1|AE001863_16 (AE001863) drug transport protein... 62 1e-08
emb|CAA20760.1| (AL031536) MSF transporter [Schizosaccharom... 61 1e-08
emb|CAB12101| (Z99105) multidrug-efflux transporter [Bacill... 61 2e-08
sp|P39886|TCMA_STRGA TETRACENOMYCIN C RESISTANCE AND EXPORT... 61 2e-08
gb|AAD56432.1|AF158699_4 (AF158699) major facilitator super... 61 2e-08
emb|CAB37973| (X76640) hypothetical protein [Myxococcus xan... 61 2e-08
ref|NP_009952.1|YCR023C| Membrane transporter; Ycr023cp >gi... 61 2e-08
gi|3169811 (AF029304) Fnx1p [Schizosaccharomyces pombe] 60 4e-08
emb|CAA74477.1| (Y14081) hypothetical protein [Bacillus sub... 59 6e-08
gb|AAC48874.1| (U66885) lacZ-alpha [bacteriophage lambda] >... 59 7e-08
dbj|BAA08941| (D50453) multidrug resistance protein(EmrB) h... 59 7e-08
emb|CAB71269.1| (AL138598) putative integral membrane efflu... 58 2e-07
emb|CAB62752.1| (AL133424) putative membrane transport prot... 58 2e-07
emb|CAB12938| (Z99109) similar to multidrug resistance prot... 58 2e-07
emb|CAA70662| (Y09476) YitG [Bacillus subtilis] 58 2e-07
gb|AAF12254.1|AE001862_80 (AE001862) drug transport protein... 57 2e-07
gb|AAF10899.1|AE001979_5 (AE001979) multidrug-efflux transp... 57 2e-07
emb|CAA92452.1| (Z68215) cDNA EST yk317f3.3 comes from this... 57 2e-07
emb|CAB55652.1| (AL117385) putative transmembrane efflux pr... 57 3e-07
gb|AAD42406.1|AF157493_14 (AF157493) putative transporter [... 57 3e-07
gi|2649251 (AE001012) multidrug resistance protein [Archaeo... 57 3e-07
emb|CAB12667| (Z99108) similar to multidrug resistance prot... 57 3e-07
ref|NP_009852.1|YBR293W| Probable multidrug resistance prot... 57 3e-07
gb|AAD25166.1|AF030397_4 (AF030397) putative 4-chlorobenzoa... 57 4e-07
gi|3372360 (AF042490) 4-chlorobenzoate transport protein [A... 56 5e-07
gi|2648517 (AE000963) sugar transporter, putative [Archaeog... 56 5e-07
sp|Q10072|YAN6_SCHPO HYPOTHETICAL 63.5 KD PROTEIN C3H1.06C ... 56 5e-07
dbj|BAA29758| (AP000003) 413aa long hypothetical protein [P... 56 6e-07
emb|CAA16868.1| (AL021748) MFS efflux transporter of unknow... 56 6e-07
gb|AAF10876.1|AE001977_9 (AE001977) major facilitator famil... 55 8e-07
dbj|BAA78678.1| (AB019519) VarS [Streptomyces virginiae] 55 1e-06
sp|Q00538|MMR_BACSU METHYLENOMYCIN A RESISTANCE PROTEIN (MM... 55 1e-06
emb|CAA21416.1| (AL031907) putative vesicular acetylcholine... 54 2e-06
gi|2792329 (AF040570) rifamycin efflux protein [Amycolatops... 54 2e-06
dbj|BAA19354| (AB001488) SIMILAR TO YDDS_BACSU. [Bacillus s... 54 2e-06
pir||S43686 monoamine transport protein homolog - Torpedo o... 54 2e-06
gi|458257 (U05339) vesicular acetylcholine transporter [Tor... 54 2e-06
pir||S18539 actVA-1 protein - Streptomyces coelicolor >gi|5... 54 2e-06
gb|AAF18594.1|AC002354_1 (AC002354) putative tetracycline t... 54 2e-06
gi|2293179 (AF008220) YttB [Bacillus subtilis] >gi|2635519|... 54 2e-06
gi|2072793 (U70046) No definition line found [Pseudomonas a... 54 2e-06
gb|AAD50292.1|AF172824_1 (AF172824) vesicular acetylcholine... 53 3e-06
pir||S47094 hypothetical protein - rabbit >gi|498983|emb|CA... 53 3e-06
gb|AAD32274.1| (U67949) contains similarity t to sugar and ... 53 4e-06
gb|AAB81677.1| (AC002354) putative tetracycline transporter... 53 4e-06
sp|P37597|YDHC_ECOLI HYPOTHETICAL 43.4 KD PROTEIN IN PURR-C... 53 4e-06
dbj|BAA15426| (D90809) Bicyclomycin resistance protein (Sul... 53 4e-06
pir||S43685 monoamine transport protein homolog - marbled e... 53 4e-06
gi|458263 (U05591) vesamicol binding protein [Torpedo marmo... 53 4e-06
emb|CAB73511.1| (AL139077) putative efflux pump [Campylobac... 53 5e-06
emb|CAB60461.1| (AL132856) putative transmembrane efflux pr... 53 5e-06
dbj|BAA19345| (AB001488) PROBABLE METABOLITE TRANSPORT PROT... 53 5e-06
emb|CAB61606.1| (AL133210) putative export protein [Strepto... 52 7e-06
emb|CAB02373| (Z80226) hypothetical protein Rv0783c [Mycoba... 52 7e-06
dbj|BAA14386| (D90381) Tc resistance protein [synthetic con... 52 9e-06
dbj|BAA11739| (D83026) hypothetical [Bacillus subtilis] >gi... 52 9e-06
gb|AAF11851.1|AE002062_4 (AE002062) multidrug-efflux transp... 52 1e-05
sp|P37498|YYBF_BACSU HYPOTHETICAL 44.2 KD PROTEIN IN COTF-T... 51 2e-05
emb|CAA40706| (X57470) p43 [Escherichia coli] 51 2e-05
sp|P39386|YJIO_ECOLI HYPOTHETICAL 44.7 KD PROTEIN IN IADA-M... 51 2e-05
dbj|BAA10613| (D64004) hypothetical protein [Synechocystis ... 50 3e-05
emb|CAA23882| (V00611) coding sequence [Escherichia coli] 50 3e-05
gi|2625056 (AF030197) vesicular acetylcholine transporter [... 50 4e-05
gb|AAF27726.1|AF156486_5 (AF156486) chloramphenicol transpo... 50 5e-05
sp|P24077|YBDA_ECOLI HYPOTHETICAL MEMBRANE PROTEIN P43 >gi|... 50 5e-05
sp|P31474|YIEO_ECOLI HYPOTHETICAL 51.5 KD PROTEIN IN RBSR-R... 50 5e-05
gb|AAF13274.1|AF199486_1 (AF199486) sugar transporter 4 [Dr... 49 6e-05
emb|CAB49189.1| (AJ248283) hypothetical protein [Pyrococcus... 49 6e-05
emb|CAB43715.1| (AJ009627) multidrug resistance transporter... 49 6e-05
emb|CAB08887| (Z95554) hypothetical protein Rv1634 [Mycobac... 49 6e-05
sp|P43531|YNFM_ECOLI HYPOTHETICAL 45.3 KD PROTEIN IN MLC-AS... 49 6e-05
pir||D64464 hypothetical protein MJ1317 - Methanococcus jan... 49 6e-05
gi|1669857 (U70055) macrolide-efflux protein [Streptococcus... 49 8e-05
gi|2618837 (AF017113) YvkA [Bacillus subtilis] >gi|2636047|... 48 1e-04
dbj|BAA19401| (AB001488) SIMILAR TO BICYCLOMYCIN RESISTANCE... 48 1e-04
gb|AAF13999.1|AF201913_2 (AF201913) SgcB [Streptomyces glob... 48 1e-04
emb|CAB66155.1| (AJ011372) sugar transporter [Homo sapiens] 48 2e-04
gi|2293329 (AF008220) YtbD [Bacillus subtilis] >gi|2635369|... 48 2e-04
pir||S58131 integral membrane protein LmrP - Lactococcus la... 48 2e-04
gb|AAD14769| (AF125971) contains similarity to tetracycline... 47 2e-04
sp|Q46966|MDFA_ECOLI MULTIDRUG TRANSLOCASE MDFA (CHLORAMPHE... 47 2e-04
sp|P31442|EMRD_ECOLI MULTIDRUG RESISTANCE PROTEIN D >gi|290... 47 2e-04
dbj|BAA29302.1| (AP000001) 385aa long hypothetical protein ... 47 3e-04
gb|AAD14701| (AF125952) contains similarity to monocarboxyl... 47 3e-04
gb|AAC27108.1| (AF009672) VanK [Acinetobacter sp. ADP1] 47 3e-04
pir||C55220 msyB homolog, pbpD 5'-region - Bacillus subtili... 47 3e-04
emb|CAB49137.1| (AJ248283) MULTIDRUG RESISTANCE PROTEIN [Py... 46 4e-04
emb|CAA69997| (Y08743) MdfA [Escherichia coli] 46 4e-04
ref|NP_013031.1|YKR105C| Ykr105cp >gi|549651|sp|P36172|YK85... 46 4e-04
dbj|BAA17836| (D90909) quinolene resistance protein NorA [S... 46 5e-04
pir||C64167 hypothetical protein HI1104 - Haemophilus influ... 46 5e-04
dbj|BAA29305.1| (AP000001) 387aa long hypothetical protein ... 45 0.001
gi|2435399 (U80063) putative transmembrane, proton-dependen... 45 0.001
emb|CAB75124.1| (AL139075) putative sugar transporter [Camp... 45 0.002
emb|CAB46978.1| (AL096825) putative transmembrane transport... 45 0.002
sp|Q01827|VMT2_RAT SYNAPTIC VESICLE AMINE TRANSPORTER (MONO... 45 0.002
sp|P21906|GLF_ZYMMO GLUCOSE FACILITATED DIFFUSION PROTEIN >... 45 0.002
emb|CAB13555| (Z99112) similar to phage-related protein [Ba... 44 0.002
gb|AAF10631.1|AE001956_12 (AE001956) hypothetical protein [... 44 0.003
emb|CAA14548| (AJ235270) PROLINE/BETAINE TRANSPORTER (proP1... 44 0.003
pir||JQ1201 CmlA protein - Pseudomonas sp. plasmid R1033 tr... 44 0.003
emb|CAA16033| (AL021246) hypothetical protein Rv2456c [Myco... 43 0.004
emb|CAB07473| (Z92954) product highly similar to metabolite... 43 0.004
dbj|BAA15320| (D90801) Bicyclomycin resistance protein (Sul... 43 0.005
emb|CAB72528.1| (AL139074) putative efflux protein [Campylo... 43 0.006
gi|2315545 (AF016656) Similar to sugar transporter [Caenorh... 43 0.006
emb|CAB73495.1| (AL139077) putative transmembrane transport... 42 0.008
emb|CAB46807.1| (AL096811) putative integral membrane trans... 42 0.008
ref|NP_010143.1|RGT2| glucose permease; Rgt2p >gi|2500936|s... 42 0.008
sp|P32482|CMLA_PSEAE CHLORAMPHENICOL RESISTANCE PROTEIN >gi... 42 0.008
emb|CAA04021| (AJ000346) NapC protein [Enterococcus hirae]
Length = 400
Score = 393 bits (998), Expect = e-108
Identities = 191/388 (49%), Positives = 260/388 (66%), Gaps = 1/388 (0%)
Query: 3 INKHAXXXXXXXXXXXXXXXXXXSPVVPFMVAPFA-NAHDQALIVTSLMAIYALCTFFAA 61
INKHA +PV+PFMV + N QA VT L AIYA F AA
Sbjct: 5 INKHALVFGFTSVFLIGLGLTIVNPVIPFMVEQYTKNTQQQATTVTLLSAIYAFSMFLAA 64
Query: 62 PALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYF 121
P LG+LSDRFGRK IL+ SL GSA+GY +FG G+LW+LFLGRII+GLTGG I + AYF
Sbjct: 65 PMLGALSDRFGRKIILISSLFGSAIGYYLFGFGGALWILFLGRIIEGLTGGEISAILAYF 124
Query: 122 ADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFV 181
AD+T E+RTK FGW +A VG+GT +GP +GG LA +G ++P Y + +S++N +YG F
Sbjct: 125 ADLTPIESRTKYFGWISATVGIGTAAGPLIGGFLAQYGPAIPLYVASFLSLSNAVYGYFF 184
Query: 182 MNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSL 241
M ESL + RTRN SL+Q+NPF QL + +++ LL G L+WLPNG+ QAI +QFS+
Sbjct: 185 MPESLTKRERTRNLSLQQINPFKQLQLVFTFRSVKWLLITGFLIWLPNGSFQAIFAQFSI 244
Query: 242 DSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSA 301
D+F +P++IG S++G+MDI Q+ IMP LLK E+++I + + E+I Y + LSA
Sbjct: 245 DTFHLSPIIIGFTFSLIGIMDIFAQLLIMPILLKFWRENQIITMGITSEMIGYSVIILSA 304
Query: 302 FSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLI 361
F P FI+ M F GD+IF ++NG +S A+ +QGK+QG SQ++QAL RVIGP+I
Sbjct: 305 FYGSIPCFIIGMVFFGLGDAIFSPSYNGLISTYASKEDQGKIQGASQSIQALARVIGPMI 364
Query: 362 GGQIYISLGHFAPALMGFIFLIIALLVL 389
GGQ+Y + H P ++GFI L +A ++
Sbjct: 365 GGQLYANFHHTMPFIIGFILLGLATFIV 392
gi|207852 (M20189) tet protein [artificial sequence]
Length = 396
Score = 197 bits (495), Expect = 2e-49
Identities = 120/340 (35%), Positives = 175/340 (51%), Gaps = 6/340 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ ++ A L+A+YAL F AP LG+LSDRFGR+P+LL SL G+ +
Sbjct: 26 PVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATI 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I LW+L+ GRI+ G+TG AY ADITD E+R + FG +A GVG +
Sbjct: 86 DYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP GGLL PF A+++ NLL G F+M ES R L+ NP +
Sbjct: 146 AGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQES--HKGERRPMPLRAFNPVSSF 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
M + L+ ++ L A+ F D F W+ +IGL++++ G++ L Q
Sbjct: 204 RWARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQ 263
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
F+ K E + I + + + Y+L A + ++ W F + M + A G I A
Sbjct: 264 AFVTGPATKRFGEKQAIIAGMAADALGYVLLAFA--TRGWMAFPI-MILLASG-GIGMPA 319
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
LS+ QG+LQG AL +LT +IGPLI IY
Sbjct: 320 LQAMLSRQVDDDHQGQLQGSLAALTSLTSIIGPLIVTAIY 359
sp|P02982|TCR1_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS A (TETA(A))
>gi|78883|pir||JQ1479 tetracycline resistance protein -
Escherichia coli transposon Tn1721
>gi|581806|emb|CAA43643| (X61367) tetracycline
resistance protein [Escherichia coli]
Length = 399
Score = 196 bits (494), Expect = 2e-49
Identities = 115/342 (33%), Positives = 181/342 (52%), Gaps = 10/342 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ +++D L+A+YAL F AP LG+LSDRFGR+P+LL+SLAG+A+
Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALMQFACAPVLGALSDRFGRRPVLLVSLAGAAV 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GRI+ G+TG AY ADITD + R + FG+ +A G G +
Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ--LNPFT 204
+GP +GGL+ F PF+ A ++ N L G F+ LPE+H+ L++ LNP
Sbjct: 146 AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL----LPESHKGERRPLRREALNPLA 201
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
M + L+ ++ L A+ F D F W IG++++ G++ L
Sbjct: 202 SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL 261
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q I + E + + L ++ + Y+L A + ++ W F + + + + G I
Sbjct: 262 AQAMITGPVAARLGERRALMLGMIADGTGYILLAFA--TRGWMAFPIMVLLASGG--IGM 317
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LS+ QG+LQG AL +LT ++GPL+ IY
Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
gb|AAD19681.1| (AF118810) RK2 tetracycline resistance protein [Shuttle vector
pME6010] >gi|4378792|gb|AAD19688| (AF118811) RK2
tetracycline resistance protein [Shuttle vector pME6031]
>gi|4512184|gb|AAD21659.1| (AF133828) RK2 tetracycline
resistance protein [Shuttle vector pME6011]
>gi|4512192|gb|AAD21666.1| (AF133829) RK2 tetracycline
resistance protein [Shuttle vector pME6012]
>gi|4512200|gb|AAD21673.1| (AF133830) TetA [Shuttle
vector pME6030]
Length = 424
Score = 195 bits (491), Expect = 5e-49
Identities = 115/342 (33%), Positives = 180/342 (52%), Gaps = 10/342 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ +++D L+A+YAL F AP LG+LSDRFGR+PILL+SLAG+ +
Sbjct: 51 PVLPGLLRDLVHSNDVTAHYGILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATV 110
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GRI+ G+TG AY ADITD + R + FG+ +A G G +
Sbjct: 111 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 170
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ--LNPFT 204
+GP +GGL+ F PF+ A ++ N L G F+ LPE+H+ L++ LNP
Sbjct: 171 AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL----LPESHKGERRPLRREALNPLA 226
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
M + L+ ++ L A+ F D F W IG++++ G++ L
Sbjct: 227 SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL 286
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q I + E + + L ++ + Y+L A + ++ W F + + + + G I
Sbjct: 287 AQAMITGPVAARLGERRALMLGMIADGTGYILLAFA--TRGWMAFPIMVLLASGG--IGM 342
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LS+ QG+LQG AL +LT ++GPL+ IY
Sbjct: 343 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 384
pir||S38656 tetA protein - Pseudomonas aeruginosa >gi|581438|emb|CAA53389|
(X75761) tetA [Pseudomonas aeruginosa] >gi|1628646
(U73849) TetA [synthetic construct]
>gi|4930298|dbj|BAA78027.1| (AB027254) tetA [Cloning
vector pSB4] >gi|4930301|dbj|BAA78029.1| (AB027255) tetA
[Cloning vector pSB1]
Length = 399
Score = 195 bits (491), Expect = 5e-49
Identities = 115/342 (33%), Positives = 180/342 (52%), Gaps = 10/342 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ +++D L+A+YAL F AP LG+LSDRFGR+PILL+SLAG+ +
Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATV 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GRI+ G+TG AY ADITD + R + FG+ +A G G +
Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ--LNPFT 204
+GP +GGL+ F PF+ A ++ N L G F+ LPE+H+ L++ LNP
Sbjct: 146 AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL----LPESHKGERRPLRREALNPLA 201
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
M + L+ ++ L A+ F D F W IG++++ G++ L
Sbjct: 202 SFRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL 261
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q I + E + + L ++ + Y+L A + ++ W F + + + + G I
Sbjct: 262 AQAMITGPVAARLGERRALMLGMIADGTGYILLAFA--TRGWMAFPIMVLLASGG--IGM 317
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LS+ QG+LQG AL +LT ++GPL+ IY
Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
gi|1236519 (U46855) tetracycline resistance protein [Cloning vector pAS1-tet]
Length = 394
Score = 195 bits (490), Expect = 7e-49
Identities = 119/340 (35%), Positives = 174/340 (51%), Gaps = 6/340 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ ++ A L+A+YAL F AP LG+LSDRFGR+P+LL SL G+ +
Sbjct: 26 PVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATI 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I LW+L+ GRI+ G+TG AY ADITD E+R + FG +A GVG +
Sbjct: 86 DYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP GGLL PF A+++ NLL G F+M ES R L+ NP +
Sbjct: 146 AGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQES--HKGERRPMPLRAFNPVSSF 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
M + L+ ++ L A+ F D F W+ +IGL++++ G++ L Q
Sbjct: 204 RWARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQ 263
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
F+ K E + I + + + Y+L A + ++ W F + M + A G I A
Sbjct: 264 AFVTGPATKRFGEKQAIIAGMAADALGYVLLAFA--TRGWMAFPI-MILLASG-GIGMPA 319
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
LS+ QG+LQG AL +LT + GPLI IY
Sbjct: 320 LQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLIVTAIY 359
pir||YTECR1 tetracycline resistance protein - Escherichia coli plasmid PR1
transposon Tn1721 >gi|1333751|emb|CAA24909| (X00006)
possible tetA protein [unidentified bacterium]
>gi|2343037 (U75324) TetA [Cloning vector pJB3Tc20]
>gi|2576387 (U82001) TetA [Expression vector pJB866]
Length = 399
Score = 195 bits (490), Expect = 7e-49
Identities = 115/342 (33%), Positives = 182/342 (52%), Gaps = 10/342 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ +++D L+A+YAL F AP LG+LSDRFGR+PILL+SLAG+ +
Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGATV 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GRI+ G+TG AY ADITD + R + FG+ +A G G +
Sbjct: 86 DYAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ--LNPFT 204
+GP +GGL+ F PF+ A ++ N L G F+ LPE+H+ L++ LNP +
Sbjct: 146 AGPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL----LPESHKGERRPLRREALNPLS 201
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
+ M + L+ ++ L A+ F D F W IG++++ G++ L
Sbjct: 202 FVRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSL 261
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q I + E + + L ++ + Y+L A + ++ W F + + + + G I
Sbjct: 262 AQAMITGPVAARLGERRALMLGMIADGTGYILLAFA--TRGWMAFPIMVLLASGG--IGM 317
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LS+ QG+LQG AL +LT ++GPL+ IY
Sbjct: 318 PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 359
sp|P02981|TCR3_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS C (TETA(C))
>gi|72840|pir||YTEC32 tetracycline resistance protein -
Escherichia coli plasmid pBR322 >gi|208959 (J01749)
tetracycline resistance protein [Cloning vector pBR322]
>gi|208978 (M98046) Tet [Cloning vector] >gi|460953
(U07168) tetracycline efflux protein [Cloning vector
pUCP26] >gi|595991 (U17139) tetracycline resistance
protein [Cloning vector pSIT] >gi|732518 (U22104)
tetracycline efflux protein [Cloning vector pAComegaGm]
>gi|833820|gb|AAB06690.1| (U25059) unnamed protein
product [Cloning vector pBBR1MCS-3] >gi|1051184 (U37692)
Description: tetracyline resistance gene; tetracycline
resistance protein [Cloning vector lambda TXF97]
>gi|1052555|emb|CAA90509| (Z50148) pMin1,
tetracyclin-resistance protein [synthetic construct]
>gi|1052557|emb|CAA90510| (Z50149) pMin2
tetracyclin-resistance protein [synthetic construct]
>gi|1066307 (U39284) tetracycline resistance protein
[Cloning vector TLF97-1] >gi|1066311 (U39285)
tetracycline resistance protein [Cloning vector TLF97-2]
>gi|1066315 (U39286) tetracycline resistance protein
[Cloning vector TLF97-3] >gi|1197549 (U47102) TetR
[Cloning vector pALTER-Ex1] >gi|1197552 (U47103) TetR
[Cloning vector pALTER-Ex2]
>gi|1208492|dbj|BAA08269.1| (D45834) protein resposible
for tetracycline resistance [Size marker plasmid pKF339]
>gi|1335929|gb|AAB01166.1| (U54828) tetracycline efflux
protein [synthetic construct] >gi|1335935|gb|AAB01171.1|
(U54829) tetracycline efflux protein [synthetic
construct] >gi|1335940|gb|AAB01175.1| (U54830)
tetracycline efflux protein [synthetic construct]
>gi|2961147 (AF047519) tetracycline efflux protein
[Cloning vector pEX18Tc] >gi|3037076 (AF055345)
tetracycline-resistance protein [Francisella tularensis]
>gi|3135563 (AF061924) tetracycline resistance protein
[Plasposon pTnMod-OTc] >gi|3135566 (AF061925)
tetracycline resistance protein [Plasposon pTnMod-OTc']
>gi|3135573 (AF061927) tetracycline resistance protein
[Plasposon pTnMod-CmOTc] >gi|3135577 (AF061928)
tetracycline resistance protein [Plasposon
pTnMod-Cm'OTc] >gi|3135605 (AF062082) tetracycline
resistance protein class C [Cloning vector p34S-Tc]
>gi|6272577|gb|AAF06113.1|AF140576_2 (AF140576) Tet
protein [Integration vector mini-CTX1]
>gi|6272581|gb|AAF06116.1|AF140577_3 (AF140577) Tet
protein [Integration vector mini-CTX2]
>gi|6272585|gb|AAF06119.1|AF140578_3 (AF140578) Tet
protein [Integration vector mini-CTX-GFP]
>gi|6272589|gb|AAF06122.1|AF140579_3 (AF140579) Tet
protein [Integration vector mini-CTX-lacZ]
>gi|223759|prf||0909740A protein,tetracyclin resistance
[Escherichia coli]
Length = 396
Score = 195 bits (490), Expect = 7e-49
Identities = 119/340 (35%), Positives = 174/340 (51%), Gaps = 6/340 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ ++ A L+A+YAL F AP LG+LSDRFGR+P+LL SL G+ +
Sbjct: 26 PVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATI 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I LW+L+ GRI+ G+TG AY ADITD E+R + FG +A GVG +
Sbjct: 86 DYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP GGLL PF A+++ NLL G F+M ES R L+ NP +
Sbjct: 146 AGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQES--HKGERRPMPLRAFNPVSSF 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
M + L+ ++ L A+ F D F W+ +IGL++++ G++ L Q
Sbjct: 204 RWARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQ 263
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
F+ K E + I + + + Y+L A + ++ W F + M + A G I A
Sbjct: 264 AFVTGPATKRFGEKQAIIAGMAADALGYVLLAFA--TRGWMAFPI-MILLASG-GIGMPA 319
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
LS+ QG+LQG AL +LT + GPLI IY
Sbjct: 320 LQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLIVTAIY 359
gi|984918 (U35134) tetracycline resistance protein [Cloning vector pBSL190]
>gi|984921 (U35135) tetracycline resistance protein
[Cloning vector pBSL193]
Length = 396
Score = 194 bits (489), Expect = 9e-49
Identities = 119/340 (35%), Positives = 174/340 (51%), Gaps = 6/340 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ ++ A L+A+YAL F AP LG+LSDRFGR+P+LL SL G+ +
Sbjct: 26 PVLPGLLRDIVHSDSIASHYGVLLALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATI 85
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I LW+L+ GRI+ G+TG AY ADITD E+R + FG +A GVG +
Sbjct: 86 DYAIMATTPVLWILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMV 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP GGLL PF A+++ NLL G F+M ES R L+ NP +
Sbjct: 146 AGPVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQES--HKGERRPMPLRAFNPVSSF 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
M + L+ ++ L A+ F D F W+ +IGL++++ G++ L Q
Sbjct: 204 RWARGMTIVAALMTVLFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQ 263
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
F+ K E + I + + + Y+L A + ++ W F + M + A G I A
Sbjct: 264 AFVTGPATKRFGEKQAIIAGMAADALGYVLLAFA--TRGWMAFPI-MILLASG-GIGMPA 319
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
LS+ QG+LQG AL +LT + GPLI IY
Sbjct: 320 LQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLIVTAIY 359
gb|AAF10051.1|AE001906_7 (AE001906) tetracycline-efflux transporter [Deinococcus
radiodurans]
Length = 407
Score = 187 bits (469), Expect = 2e-46
Identities = 116/341 (34%), Positives = 174/341 (51%), Gaps = 6/341 (1%)
Query: 27 PVVPFMVAPFANAH-DQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
PV+P +V A + A + L A YA F AP LG+LSDRFGR+P+LL+SLAG
Sbjct: 30 PVLPGLVKELAGSEAGGARFIGVLTAAYAAMQFIFAPILGTLSDRFGRRPVLLLSLAGMV 89
Query: 86 LGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGT 145
L YL+ + +LW L +GR+I G+TG ++ AY AD+T E+R K FG A GVG
Sbjct: 90 LDYLLLFFSPNLWWLLVGRLIAGVTGASLTVANAYIADVTAPEDRAKNFGRLGATWGVGF 149
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
I GP +GG L G PF F A ++ N LYG V+ ESLP R LNPFT
Sbjct: 150 ILGPMLGGWLGEHGLRAPFLFAAGLTALNFLYGLLVLPESLPPEKRGAAGG-GTLNPFTP 208
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
L L L L +LL L + + ++ W+P+ G+A ++ GL+
Sbjct: 209 LRALTEYPLLRGLTLTFVLLGLAGQVIVSTWVLYTEGVLRWSPLQNGIAFAVYGLLTAGV 268
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
Q ++ + E + I LV + +++ ++ ++ P L++ + A G +
Sbjct: 269 QAGLISPFIARFGERRTIMTGLVASTLEFVVLSV---ARSAPVLYLSLVVGALG-GLAQP 324
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A G +S+ EQG++ G +L +L V GPL+ ++
Sbjct: 325 AMQGLISRQVGEQEQGRVMGAITSLNSLVGVFGPLLATSVF 365
sp|P02980|TCR2_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS B (TETA(B))
(METAL-TETRACYCLINE/H+ ANTIPORTER) >gi|72835|pir||YTECT0
tetracycline resistance protein - Escherichia coli
transposon Tn10 >gi|5103199|dbj|BAA78835.1| (AP000342)
tetracycline resistance protein [Plasmid R100]
>gi|5738089|gb|AAD50247.1|AF162223_6 (AF162223) TetA
[Shigella flexneri]
Length = 401
Score = 176 bits (443), Expect = 2e-43
Identities = 114/359 (31%), Positives = 175/359 (47%), Gaps = 13/359 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + D A L+A+YAL AP LG +SDRFGR+P+LL+SL G++L
Sbjct: 24 PVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + +LWML+LGR++ G+TG + AD T R K FGW A+ G+G I
Sbjct: 84 DYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ- 205
+GP +GG PF+ AL++I L F ET TR+ + ++ TQ
Sbjct: 144 AGPIIGGFAGEISPHSPFFIAALLNIVTFLVVMFWFR----ETKNTRDNTDTEVGVETQS 199
Query: 206 -LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
+ K + LL L + F+ + F W +++G +++ +GL+ +
Sbjct: 200 NSVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSLAGLGLLHSV 259
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q F+ R+ E + L + + A+ A S+ W + + I G I
Sbjct: 260 FQAFVAGRIATKWGEKTAVLLGFIADSSAFAFLAF--ISEGW--LVFPVLILLAGGGIAL 315
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A G +S S +QG LQG +L T VIGPL+ IY H P G+I++I
Sbjct: 316 PALQGVMSIQTKSHQQGALQGLLVSLTNATGVIGPLLFAVIY---NHSLPIWDGWIWII 371
gi|3860032 (AF090987) drug efflux protein TetA [Agrobacterium tumefaciens]
Length = 394
Score = 175 bits (440), Expect = 5e-43
Identities = 109/365 (29%), Positives = 187/365 (50%), Gaps = 13/365 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P++P ++ D + ++ ++A+ F +P LG+LSDRFGR+P+LL+SLAG+ L
Sbjct: 24 PILPDILVEVTGGGDIGFLYGVMLGVFAVMQFVFSPILGALSDRFGRRPVLLLSLAGTLL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + W+L +GR + G+T N+ AY DIT E R + FG A + +G I
Sbjct: 84 DYLVMAFSPLGWVLVVGRAMAGITSANMAVASAYITDITPAEQRAQRFGTVGAVMSLGFI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRT--RNFSLKQLNPFT 204
GP +GG++ + PF AL + NL FV LPE+ + F+ K+LNP
Sbjct: 144 IGPVIGGVIGAWWLRAPFLVAALFNGLNLFVALFV----LPESRKAGPGKFAFKELNPLA 199
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
L L K L L+ ++ L I + + F W V +GL++S+ G+ L
Sbjct: 200 PLVWLWNFKPLLPLVTVSVVFGLVAAIPGTIWVLYGAERFGWDSVHMGLSLSVFGVSGAL 259
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q F++ L + + + + + +++AY+L A + ++ W + +A +FA G +
Sbjct: 260 AQAFLVGPLSRRFGDLGTLMIGVGFDMLAYMLMAFA--NQSWMGYAVAP-LFALG-GVAM 315
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLII 384
A ++ + +QG+LQG +L +L +IGP++ ++ S +G I+L+
Sbjct: 316 PALQSLVTSRVSDDQQGQLQGVLASLMSLAGIIGPVLTTAVFFST---KSIWIGTIWLVG 372
Query: 385 ALLVL 389
A L L
Sbjct: 373 AALYL 377
emb|CAA23880| (V00611) coding sequence [Escherichia coli] >gi|154847 (J01830)
tetracycline resistance protein (tetA) [Transposon Tn10]
>gi|5327032|emb|CAB46266.1| (AJ247373) tetracyclin
resistance protein [Cloning vector pYanni5]
Length = 401
Score = 175 bits (440), Expect = 5e-43
Identities = 116/359 (32%), Positives = 175/359 (48%), Gaps = 13/359 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + D A L+A+YAL AP LG +SDRFGR+P+LL+SL G++L
Sbjct: 24 PVLPTLLREFIASEDIANHFGVLLALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + +LWML+LGR++ G+TG + AD T R K FGW A+ G+G I
Sbjct: 84 DYLLLAFSSALWMLYLGRLLSGITGATGAVAASVIADTTSASQRVKWFGWLGASFGLGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ- 205
+GP +GG PF+ AL++I L F ET TR+ + ++ TQ
Sbjct: 144 AGPIIGGFAGEISPHSPFFIAALLNIVTFLVVMFWFR----ETKNTRDNTDTEVGVETQS 199
Query: 206 -LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL 264
+ K + LL L + F+ + F W +++G +++ +GL+ +
Sbjct: 200 NSVYITLFKTMPILLIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSLAGLGLLHSV 259
Query: 265 TQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
Q F+ R+ E + L + + A+ A S+ W F + I G I
Sbjct: 260 FQAFVAGRIATKWGEKTAVLLEFIADSSAFAFLAF--ISEGWLDF--PVLILLAGGGIAL 315
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A G +S S EQG LQG +L T VIGPL+ IY H P G+I++I
Sbjct: 316 PALQGVMSIQTKSHEQGALQGLLVSLTNATGVIGPLLFTVIY---NHSLPIWDGWIWII 371
emb|CAA75663| (Y15510) tetracycline resistance efflux protein of class H
[Pasteurella multocida]
Length = 400
Score = 170 bits (427), Expect = 2e-41
Identities = 114/345 (33%), Positives = 174/345 (50%), Gaps = 15/345 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + + A L+A+YA AP LG LSD++GRKPILL SL G+AL
Sbjct: 24 PVLPTLLNEFVSENSLATHYGVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAAL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + +LWML++GRII G+TG + +D+T +NRT+ FG+ A GVG I
Sbjct: 84 DYLLMAFSTTLWMLYIGRIIAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGA-----LISIANLLYGAFVMNESLPETHRTRNFSLKQLN 201
GP +GGLL +PF F A L+ ++ L + E+L N + N
Sbjct: 144 IGPMLGGLLGDISAHMPFIFAAISHSILLILSLLFFRETQKREALVANRTPENQTAS--N 201
Query: 202 PFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLM 261
T F+ K+L L ++ L I F+ F W IG++++++G++
Sbjct: 202 TVTVFFK----KSLYFWLATYFIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVL 257
Query: 262 DILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDS 321
I Q + +L + E I +++ +++ LL L+ +W IL I
Sbjct: 258 HIFFQAIVAGKLAQKWGEKTTIMISMSIDMMGCLL--LAWIGHVW--VILPALICLAAGG 313
Query: 322 IFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+ A G LSKS + QGKLQG +L +T +IGPL+ IY
Sbjct: 314 MGQPALQGYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIY 358
emb|CAA76069| (Y16103) tetracycline resistance efflux protein of class H
[Pasteurella haemolytica]
Length = 400
Score = 170 bits (426), Expect = 2e-41
Identities = 114/345 (33%), Positives = 173/345 (50%), Gaps = 15/345 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + + A L+A+YA AP LG LSD++GRKPILL SL G+AL
Sbjct: 24 PVLPTLLNEFVSENSLATHYGVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAAL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + +LWML++GRII G+TG + +D+T +NRT+ FG+ A GVG I
Sbjct: 84 DYLLMAFSTTLWMLYIGRIIAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGAFGVGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGA-----LISIANLLYGAFVMNESLPETHRTRNFSLKQLN 201
GP +GGLL +PF F A L+ ++ L + E+L N + N
Sbjct: 144 IGPMLGGLLGDISAHMPFIFAAISHSILLILSLLFFRETQKREALVANRTPENQTAS--N 201
Query: 202 PFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLM 261
T F+ K+L L ++ L I F+ F W IG+++ ++G++
Sbjct: 202 TVTVFFK----KSLYFWLATYFIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLGVLGVL 257
Query: 262 DILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDS 321
I Q + +L + E I +++ +++ LL L+ +W IL I
Sbjct: 258 HIFFQAIVAGKLAQKWGEKTTIMISMSIDMMGCLL--LAWIGHVW--VILPALICLAAGG 313
Query: 322 IFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+ A G LSKS + QGKLQG +L +T +IGPL+ IY
Sbjct: 314 MGQPALQGYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIY 358
sp|P51564|TCR8_PASMU TETRACYCLINE RESISTANCE PROTEIN, CLASS H (TETA(H)) >gi|392873
(U00792) tetracycline resistance protein [Pasteurella
multocida]
Length = 400
Score = 169 bits (423), Expect = 5e-41
Identities = 113/345 (32%), Positives = 173/345 (49%), Gaps = 15/345 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + + A L+A+YA AP LG LSD++GRKPILL SL G+AL
Sbjct: 24 PVLPTLLNEFVSENSLATHYGVLLALYATMQVIFAPILGRLSDKYGRKPILLFSLLGAAL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ + +LWML++GRII G+TG + +D+T +NRT+ FG+ GVG I
Sbjct: 84 DYLLMAFSTTLWMLYIGRIIAGITGATGAVCASAMSDVTPAKNRTRYFGFLGGVFGVGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGA-----LISIANLLYGAFVMNESLPETHRTRNFSLKQLN 201
GP +GGLL +PF F A L+ ++ L + E+L N + N
Sbjct: 144 IGPMLGGLLGDISAHMPFIFAAISHSILLILSLLFFRETQKREALVANRTPENQTAS--N 201
Query: 202 PFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLM 261
T F+ K+L L ++ L I F+ F W IG++++++G++
Sbjct: 202 TVTVFFK----KSLYFWLATYFIIQLIGQIPATIWVLFTQYRFDWNTTSIGMSLAVLGVL 257
Query: 262 DILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDS 321
I Q + +L + E I +++ +++ LL L+ +W IL I
Sbjct: 258 HIFFQAIVAGKLAQKWGEKTTIMISMSIDMMGCLL--LAWIGHVW--VILPALICLAAGG 313
Query: 322 IFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+ A G LSKS + QGKLQG +L +T +IGPL+ IY
Sbjct: 314 MGQPALQGYLSKSVDDNAQGKLQGTLVSLTNITGIIGPLLFAFIY 358
gi|4104705 (AF038993) tetracycline resistance protein [Proteus mirabilis]
Length = 398
Score = 166 bits (416), Expect = 3e-40
Identities = 119/369 (32%), Positives = 176/369 (47%), Gaps = 7/369 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + + A L+A+YA AP LG LSD++GRKPILLISL G+AL
Sbjct: 24 PVLPTLLNEFVSENRLANHYGILLALYATMQVIFAPILGKLSDKYGRKPILLISLLGAAL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
YL+ SLWML++GRII G+TG + D+T RT+ FG+ A GVG I
Sbjct: 84 DYLLMACPTSLWMLYIGRIIAGITGATGAVCASAMTDVTHPHERTRYFGFLGGAFGVGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
GP +GGLL PF F A+ ++ E+ T +L Q
Sbjct: 144 IGPMLGGLLGEISAHTPFIFAAISHSLLFIFSLLCFQETQTTKISTEISALNQDTAPHST 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
++ K+L L A ++ L I F+ FAW +GL+++ +G++ I Q
Sbjct: 204 TGFIK-KSLFFWLIAYFIIQLIGQIPATIWVLFTQVRFAWHTTEVGLSLAFLGVLHIFFQ 262
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
+ +L + E + +++ + LL L+ S +W +L I + A
Sbjct: 263 AVLAGKLAQKWGERNTVIISMSIDAFGCLL--LAWISHVW--VMLPALICLAAGGMGQPA 318
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI--FLII 384
G LSKS QG+LQG +L +T ++GPL+ IY + L+ FI L
Sbjct: 319 LQGYLSKSVDHHVQGQLQGTLVSLTNITGIVGPLLFSFIYSYSVEYWDGLLWFIGAMLYS 378
Query: 385 ALLVLSKTK 393
LLV S K
Sbjct: 379 GLLVASYFK 387
gi|309958 (L06798) class D tetracycline/H+ antiporter [Plasmid pRA1]
>gi|575937|dbj|BAA03719| (D16172) PP-TETA protein
[Photobacterium damselae]
Length = 394
Score = 166 bits (416), Expect = 3e-40
Identities = 109/340 (32%), Positives = 164/340 (48%), Gaps = 8/340 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ + D A L+A+YA+ AP LG SD+ GR+P+LL+SLAG+A
Sbjct: 24 PVLPSLLREYLPEADVANHYGILLALYAVMQVCFAPLLGRWSDKLGRRPVLLLSLAGAAF 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y + L+ LWML+LGRII G+TG + AD T RT FG AA G G I
Sbjct: 84 DYTLLALSNVLWMLYLGRIISGITGATGAVAASVVADSTAVSERTAWFGRLGAAFGAGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP +GGL +PF A+++ L F+ ++ +T +Q +
Sbjct: 144 AGPAIGGLAGDISPHLPFVIAAILNACTFLMVFFIFKPAV----QTEEKPAEQKQESAGI 199
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
+ +K L LLF L + F+ FAW +G +++ +G M L Q
Sbjct: 200 SFITLLKPLALLLFVFFTAQLIGQIPATVWVLFTESRFAWDSAAVGFSLAGLGAMHALFQ 259
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
+ L K +E +I + + A+LL +SA + W + + I G I A
Sbjct: 260 AVVAGALAKRLSEKTIIFAGFIADATAFLL--MSAITSGW--MVYPVLILLAGGGIALPA 315
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
G +S A+++ QGKLQG +L LT V GPL+ I+
Sbjct: 316 LQGIISAGASAANQGKLQGVLVSLTNLTGVAGPLLFAFIF 355
sp|P33733|TCR4_SALOR TETRACYCLINE RESISTANCE PROTEIN, CLASS D (TETA(D))
>gi|421209|pir||S30286 tetracycline resistance protein -
Salmonella ordonez plasmid pIP173
>gi|49074|emb|CAA46706| (X65876) tetracyclin resistance
protein [Salmonella ordonez] >gi|446783|prf||1912305B
tetracycline resistance protein:ISOTYPE=class D
[Salmonella ordonez]
Length = 394
Score = 164 bits (412), Expect = 9e-40
Identities = 111/340 (32%), Positives = 164/340 (47%), Gaps = 8/340 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ + D A L+A+YA+ AP LG SD+ GR+P+LL+SLAG+A
Sbjct: 24 PVLPSLLREYLPEADVANHYGILLALYAVMQVCFAPLLGRWSDKLGRRPVLLLSLAGAAF 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y + L+ LWML+LGRII G+TG + AD T RT FG AA G G I
Sbjct: 84 DYTLLALSNVLWMLYLGRIISGITGATGAVAASVVADSTAVSERTAWFGRLGAAFGAGLI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP +GGL +PF A+++ L F+ ++ + + KQ +
Sbjct: 144 AGPAIGGLAGDISPHLPFVIAAILNACTFLMVFFIFKPAVQTEEKPAD--EKQESAGISF 201
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
LL K L LLF L + F+ FAW +G +++ +G M L Q
Sbjct: 202 ITLL--KPLALLLFVFFTAQLIGQIPATVWVLFTESRFAWDSAAVGFSLAGLGAMHALFQ 259
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
+ L K +E +I + + A+LL +SA + W + + I G I A
Sbjct: 260 AVVAGALAKRLSEKTIIFAGFIADATAFLL--MSAITSGW--MVYPVLILLAGGGIALPA 315
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
G +S A+++ QGKLQG +L LT V GPL+ I+
Sbjct: 316 LQGIISAGASAANQGKLQGVLVSLTNLTGVAGPLLFAFIF 355
sp|Q07282|TCR5_ECOLI TETRACYCLINE RESISTANCE PROTEIN, CLASS E (TETA(E))
>gi|625755|pir||A36896 tetracycline resistance protein
tetA, class E - Escherichia coli plasmid pSL1503
>gi|290472 (L06940) tetracycline resistance protein
[Escherichia coli]
Length = 405
Score = 161 bits (404), Expect = 8e-39
Identities = 103/340 (30%), Positives = 167/340 (48%), Gaps = 5/340 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ F + A L+A+YA+ AP LG SDR GR+P+LL+SL G+ L
Sbjct: 24 PVLPALLREFVGKANVAENYGVLLALYAMMQVIFAPLLGRWSDRIGRRPVLLLSLLGATL 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y + A +W+L+LGR+I G+TG + AD+T EE+RT FG A G G I
Sbjct: 84 DYALMATASVVWVLYLGRLIAGITGATGAVAASTIADVTPEESRTHWFGMMGACFGGGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP +GG PF F A I+ L F+++E+ + + +N T
Sbjct: 144 AGPVIGGFAGQLSVQAPFMFAAAINGLAFLVSLFILHETHNANQVSDELKNETINETTSS 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
+ + + L+ LL ++ L + F + FAW V++G+++++ GL L Q
Sbjct: 204 IREM-ISPLSGLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQ 262
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
+ K E K I + ++ + LF L+ ++ W + + + + G ++ A
Sbjct: 263 GLAAGFIAKHLGERKAIAVGILADGCG--LFLLAVITQSWMVWPVLLLLACGGITL--PA 318
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
G +S QG+LQG +L LT VIGPL+ +Y
Sbjct: 319 LQGIISVRVGQVAQGQLQGVLTSLTHLTAVIGPLVFAFLY 358
gb|AAD25095.1|AF133140_2 (AF133140) tetracycline resistance protein [Pseudomonas sp.]
Length = 391
Score = 160 bits (401), Expect = 2e-38
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 15/366 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ A A +L+++YAL AP LG LSD +GR+P+LL SLAG+A+
Sbjct: 24 PVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLGQLSDSYGRRPVLLASLAGAAV 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GR++ G+TG + AD T E +R + FG+ A G G I
Sbjct: 84 DYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRARWFGYMGACYGAGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFSLK--QLNPF 203
+GP +GG+L PF AL++ A LL F L ETH + + K ++ PF
Sbjct: 144 AGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETHHSHGGTGKPVRIKPF 198
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
L ++ L L ++ L A+ + D F W +GL+++ G
Sbjct: 199 VLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHA 258
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+ Q F+ L E + + + + ++L A + ++ W F + + + A G +
Sbjct: 259 IFQAFVTGPLSSRLGERRTLLFGMAADATGFVLLAFA--TQGWMVFPILLLLAAGGVGM- 315
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A LS + +S++QG LQG +L L+ + GPL +Y + A A G+++++
Sbjct: 316 -PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSAT---AGAWNGWVWIV 371
Query: 384 IALLVL 389
A+L L
Sbjct: 372 GAILYL 377
gb|AAC98496.1| (AF071555) tetracycline resistance protein [Salmonella typhimurium
DT104]
Length = 375
Score = 160 bits (401), Expect = 2e-38
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 15/366 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ A A +L+++YAL AP LG LSD +GR+P+LL SLAG+A+
Sbjct: 8 PVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLGQLSDSYGRRPVLLASLAGAAV 67
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GR++ G+TG + AD T E +R + FG+ A G G I
Sbjct: 68 DYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRARWFGYMGACYGAGMI 127
Query: 147 SGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFSLK--QLNPF 203
+GP +GG+L PF AL++ A LL F L ETH + + K ++ PF
Sbjct: 128 AGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETHHSHGGTGKPVRIKPF 182
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
L ++ L L ++ L A+ + D F W +GL+++ G
Sbjct: 183 VLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHA 242
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+ Q F+ L E + + + + ++L A + ++ W F + + + A G +
Sbjct: 243 IFQAFVTGPLSSRLGERRTLLFGMAADATGFVLLAFA--TQGWMVFPILLLLAAGGVGM- 299
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A LS + +S++QG LQG +L L+ + GPL +Y + A A G+++++
Sbjct: 300 -PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSAT---AGAWNGWVWIV 355
Query: 384 IALLVL 389
A+L L
Sbjct: 356 GAILYL 361
sp|P51563|TCR7_VIBAN TETRACYCLINE RESISTANCE PROTEIN, CLASS G (TETA(G))
Length = 393
Score = 159 bits (398), Expect = 4e-38
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 15/366 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ A A +L+++YAL AP LG LSD +GR+P+LL SLAG+A+
Sbjct: 24 PVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLGQLSDSYGRRPVLLASLAGAAV 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GR++ G+TG + AD T E +R + FG+ A G G I
Sbjct: 84 DYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRARWFGYMGACYGAGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFSLK--QLNPF 203
+GP +GG+L PF AL++ A LL F L ETH + + K ++ PF
Sbjct: 144 AGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETHHSHGGTGKPVRIKPF 198
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
L ++ L L ++ L A+ + D F W +GL+++ G
Sbjct: 199 VLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHA 258
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+ Q F+ L E + + + + ++L A + ++ W F + + + A G +
Sbjct: 259 IFQAFVTGPLSSRLGERRTLLFGMAADGTGFVLLAFA--TQGWMVFPILLLLAAGGVGM- 315
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A LS + +S++QG LQG +L L+ + GPL +Y + A A G+++++
Sbjct: 316 -PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSAT---AGAWNGWVWIV 371
Query: 384 IALLVL 389
A+L L
Sbjct: 372 GAILYL 377
bbs|121867 (S52437) Tet A=40.9 kda class G tetracycline resistance determinant
[Vibrio anguillarum, pJA8122, Peptide Plasmid, 393 aa]
[Vibrio anguillarum]
Length = 393
Score = 159 bits (398), Expect = 4e-38
Identities = 110/366 (30%), Positives = 181/366 (49%), Gaps = 15/366 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ A A +L+++YAL AP LG LSD +GR+P+LL SLAG+A+
Sbjct: 24 PVLPTLLRELVPAEQVAGHYGALLSLYALMQVVFAPMLGQLSDSYGRRPVLLASLAGAAV 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GR++ G+TG + AD T E +R + FG+ A G G I
Sbjct: 84 DYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRARWFGYMGACYGAGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFSLK--QLNPF 203
+GP +GG+L PF AL++ A LL F L ETH + + K ++ PF
Sbjct: 144 AGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETHHSHGGTGKPVRIKPF 198
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
L ++ L L ++ L A+ + D F W +GL+++ G
Sbjct: 199 VLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHA 258
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+ Q F+ L E + + + + ++L A + ++ W F + + + A G +
Sbjct: 259 IFQAFVTGPLSSRLGERRTLLFGMAADGTGFVLLAFA--TQGWMVFPILLLLAAGGVGM- 315
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
A LS + +S++QG LQG +L L+ + GPL +Y + A A G+++++
Sbjct: 316 -PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSAT---AGAWNGWVWIV 371
Query: 384 IALLVL 389
A+L L
Sbjct: 372 GAILYL 377
gb|AAD25063.1|AF121000_10 (AF121000) tetracycline resistance protein TetA [Corynebacterium
glutamicum]
Length = 384
Score = 158 bits (395), Expect = 9e-38
Identities = 109/374 (29%), Positives = 181/374 (48%), Gaps = 21/374 (5%)
Query: 27 PVVPFMVAPFANAHDQA-LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
P++P ++ D L V L A+YA+ F AP LG LSDRFGR+ +L+ SLAG+
Sbjct: 17 PILPTLLDQVGAPDDMIPLHVGLLTALYAIMQFLCAPILGRLSDRFGRRRVLVASLAGAT 76
Query: 86 LGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGT 145
+ YL+ L +LW+ +L R + G+TG ADIT + R K +GW A G G
Sbjct: 77 IDYLVLALTDTLWVFYLARAVAGITGATNAVTATVIADITPPDQRAKRYGWLGACYGGGM 136
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
I+GP +GGL +PF A ++ L+ A ++ E+ P + T
Sbjct: 137 IAGPAIGGLFGGVSPHLPFLVAAALAGITLVLSASLLRETRPPGSNGSHAQQPGTAKRTA 196
Query: 206 LFQLLRMKNLNRLLFAGILLWLPN--GALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
+ +L + L GI+ ++ G+ + +Q LD W PV +G+++SI G++ +
Sbjct: 197 VPGMLIL-----LAVFGIVQFIGQAPGSTWVLFTQQRLD---WNPVEVGVSLSIFGMVQV 248
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFG-DSI 322
Q + R++ E + I + + + I L L+ + W + + A G SI
Sbjct: 249 FVQAALTGRIVSRIGETRAILVGIAADAIG--LIGLALIASTW---AMLPILAALGLGSI 303
Query: 323 FGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALM----G 378
A LS+ A +QG+LQG +L +LT +IGP+ I+ A +
Sbjct: 304 TLPALQTLLSRRAPEQQQGRLQGTLASLNSLTSIIGPVTFTGIFALTRTNADGTLWICAA 363
Query: 379 FIFLIIALLVLSKT 392
++++ ALL++ +T
Sbjct: 364 ALYVLCALLMIRET 377
gb|AAD25538.1|AF133139_2 (AF133139) tetracycline resistance protein [Pseudomonas sp.]
Length = 391
Score = 156 bits (390), Expect = 4e-37
Identities = 111/367 (30%), Positives = 182/367 (49%), Gaps = 17/367 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ A A +L+++YAL AP LG SD +GR+P+LL SLAG+A+
Sbjct: 24 PVLPTLLRELVPAEQVAGHYGALLSLYALMQVVCAPLLGQFSDGYGRRPVLLASLAGAAV 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GR+I G+TG + AD T E +R + FG+ A G G I
Sbjct: 84 DYTIMASAPVLWVLYIGRLISGITGATGAVAASTIADSTGEGSRARWFGYMGACYGTGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFS--LKQLNPF 203
+GP +GG+L PF AL++ A LL F L ET+R+ + L ++ PF
Sbjct: 144 AGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETNRSHGETGKLVRIEPF 198
Query: 204 TQLFQL-LRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMD 262
LF+L ++ L L + L A+ + D F W +GL+++ G
Sbjct: 199 V-LFRLDDALRGLTALFAVFFTIQLIGQVPAALWVIYGEDRFQWDTTTVGLSLAAFGATH 257
Query: 263 ILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSI 322
+ Q F+ L E + + + + ++L A + ++ W F + + + A G +
Sbjct: 258 AIFQAFVTGPLSSRLGERRTLLFGMAADATGFILLAFA--TQGWMVFPILLLLAAGGVGM 315
Query: 323 FGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFL 382
A LS + +S++QG LQG +L L+ + GPL +Y + A G++++
Sbjct: 316 --PALQAMLSNNVSSNKQGALQGTLTSLTNLSSIAGPLGFTALYSAT---IGAWTGWVWI 370
Query: 383 IIALLVL 389
+ A+L L
Sbjct: 371 VGAILYL 377
gi|3309049 (AF070999) tetracycline resistance protein [IncQ plasmid pIE1120]
Length = 391
Score = 150 bits (374), Expect = 3e-35
Identities = 106/363 (29%), Positives = 170/363 (46%), Gaps = 10/363 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PVVP ++ F A A +++YA F AP LG LSDR+GR+ ILL+S G+ +
Sbjct: 24 PVVPALLNEFVPAEQTAFHYGVFLSLYAFMQVFCAPVLGRLSDRYGRRIILLVSFLGATI 83
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y I A LW+L++GRII G+TG + AD T +E R + FG+ A G G I
Sbjct: 84 DYSIMAAAPVLWVLYIGRIISGVTGATGAIAASIIADTTKQEERARWFGFMGACFGAGMI 143
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
+GP +GG+L PF GAL++ AF++ ++ + + + F
Sbjct: 144 AGPAIGGVLGDISVHAPFVAGALLNAIAFCLVAFLLPKTPSQPPEGQPAKINLFEGFRFN 203
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQ 266
F + + + L F L+ AL I + L+ W G+++++ G Q
Sbjct: 204 FAVQGLASFFALFFLMQLIGQAPAALWVIYGEQRLN---WDIGTAGVSLAVFGAAHTFVQ 260
Query: 267 IFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
+ L K + ++ L + ++ +LL A ++ W + A+F+ A G I A
Sbjct: 261 AVLTGTLSKRLGDRGVLLLGMGADMCGFLLLAF--ITQSW-MVLPAIFMLATG-GIGMPA 316
Query: 327 FNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIAL 386
+S +QG LQG L +T +IGP+ +Y G A G+++L+ A
Sbjct: 317 LQAIISGLVCDEKQGALQGTLTGLTNITSIIGPVGFTTLY---GLTAGQWDGWVWLVAAS 373
Query: 387 LVL 389
L L
Sbjct: 374 LYL 376
sp|P39843|BMR2_BACSU MULTIDRUG RESISTANCE PROTEIN 2 (MULTIDRUG-EFFLUX TRANSPORTER 2)
>gi|2119909|pir||I39792 multidrug efflux transporter -
Bacillus subtilis >gi|483941 (L32599) blt gene product
[Bacillus subtilis] >gi|1303699|dbj|BAA12355| (D84432)
Blt [Bacillus subtilis] >gi|2635104|emb|CAB14600|
(Z99117) multidrug-efflux transporter [Bacillus
subtilis]
Length = 400
Score = 141 bits (353), Expect = 8e-33
Identities = 100/376 (26%), Positives = 183/376 (48%), Gaps = 18/376 (4%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
++P M + H + L+A +A+ +P G DRFGRK ++++ L +L
Sbjct: 29 IIPVMPSFMKIMHLSGSTMGYLVAAFAISQLITSPFAGRWVDRFGRKKMIILGLLIFSLS 88
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
LIFGL + + + RI+ G++ I+ + AY ADIT + R+K G+ +AA+ G I
Sbjct: 89 ELIFGLGTHVSIFYFSRILGGVSAAFIMPAVTAYVADITTLKERSKAMGYVSAAISTGFI 148
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
GP GG +A FG +PF+F + I++ + F++ ESL R QL+ T+
Sbjct: 149 IGPGAGGFIAGFGIRMPFFFASAIALIAAVTSVFILKESLSIEER------HQLSSHTKE 202
Query: 207 FQLLR--MKNLNRLLFAGILLWLPN----GALQAIISQFSLDSFAWTPVLIGLAISIMGL 260
++ ++++ + F ++ A + + S FS F +TP I I+I +
Sbjct: 203 SNFIKDLKRSIHPVYFIAFIIVFVMAFGLSAYETVFSLFSDHKFGFTPKDIAAIITISSI 262
Query: 261 MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGD 320
+ ++ Q+ + +L+ E ++I+L L+ A L F + S ++ FIF D
Sbjct: 263 VAVVIQVLLFGKLVNKLGEKRMIQLCLITG--AILAFVSTVMSGFLTVLLVTCFIFLAFD 320
Query: 321 SIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI 380
+ A LS A ++QG + G + +L + GP +GG ++ H+ GF+
Sbjct: 321 -LLRPALTAHLSNMA-GNQQGFVAGMNSTYTSLGNIFGPALGGILFDLNIHYPFLFAGFV 378
Query: 381 FLI-IALLVLSKTKSD 395
++ + L ++ K K +
Sbjct: 379 MIVGLGLTMVWKEKKN 394
gi|1124844 (L29404) tetracycline resistance protein [Escherichia coli]
Length = 315
Score = 139 bits (346), Expect = 5e-32
Identities = 86/281 (30%), Positives = 138/281 (48%), Gaps = 10/281 (3%)
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTIS 147
Y I A LW+L++GRI+ G+TG AY ADITD + R + FG+ +A G G ++
Sbjct: 3 YAIMATAPFLWVLYIGRIVAGITGATGAVAGAYIADITDGDERARHFGFMSACFGFGMVA 62
Query: 148 GPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ--LNPFTQ 205
GP +GGL+ F PF+ A ++ N L G F+ LPE+H+ L++ LNP
Sbjct: 63 GPVLGGLMGGFSPHAPFFAAAALNGLNFLTGCFL----LPESHKGERRPLRREALNPLAS 118
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
M + L+ ++ L A+ F D F W IG++++ G++ L
Sbjct: 119 FRWARGMTVVAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLA 178
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
Q I + E + + L ++ + Y+L A + ++ W F + + + + G I
Sbjct: 179 QAMITGPVAARLGERRALMLGMIADGTGYILLAFA--TRGWMAFPIMVLLASGG--IGMP 234
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LS+ QG+LQG AL +LT ++GPL+ IY
Sbjct: 235 ALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGPLLFTAIY 275
gb|AAF11718.1|AE002050_4 (AE002050) drug transport protein [Deinococcus radiodurans]
Length = 441
Score = 124 bits (309), Expect = 1e-27
Identities = 101/355 (28%), Positives = 161/355 (44%), Gaps = 30/355 (8%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGL-----------AGSLWMLF 101
Y+L F +P G+ S+ GR+P LL+ L G ++ + +FGL G+L+ L
Sbjct: 85 YSLMQFIFSPIWGNRSEHHGRRPTLLMGLVGFSVSFGLFGLFAQLGMNGGLALGTLFALL 144
Query: 102 LG-RIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFG 159
+G RII G+ + + T A ADI+ E++R G AA G+G + GP +GGLL+
Sbjct: 145 VGTRIIGGIFSSATLPTAQAMMADISSEDDRAASMGLIGAAFGLGVVFGPAIGGLLSGIS 204
Query: 160 NSVPFYFGALISIANLLYGAFVMNESL-PETHRTRNFSLKQLNPFTQLFQLLRMKNLNRL 218
P YF A + + F++ E+ P RT + LL +
Sbjct: 205 LVAPVYFSAGLGLFTAALAYFMVPETRHPGQTRTATVDRR---------SLLSRGGIPLF 255
Query: 219 LFAGILLWLPNGALQAIISQFSLDSFAWTP----VLIGLAISIMGLMDILTQIFIMPRLL 274
L A L L + ++ IS + D P +G ++I G++ L Q + L
Sbjct: 256 LAASALTTLASVGMEQTISFYVQDVMKLDPGETAKTVGKMLAIFGILAALVQGGAIRPLS 315
Query: 275 KLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKS 334
K LI + LV I+A +F L + WP A+ + G +I + LS S
Sbjct: 316 KKLPPTPLILVGLV--IMAAGMFLLPQMATYWP-ITAALALIGVGSAILSPTLSAALSLS 372
Query: 335 ATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVL 389
QG + G + + AL R++GPL+G +Y +GH AP + L + +V+
Sbjct: 373 VGKDGQGAVAGLNSSALALGRMVGPLLGTNLYQHVGHGAPYIASGSILAVLFVVM 427
gb|AAF04096.1|AF188291_2 (AF188291) 12-TMS multidrug efflux protein homolog [Salmonella
typhi]
Length = 413
Score = 124 bits (308), Expect = 1e-27
Identities = 100/379 (26%), Positives = 174/379 (45%), Gaps = 31/379 (8%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
V+PF + + LI+ ++A A F AAP +G LSDR GRK IL+++LA +A+
Sbjct: 42 VLPFYIREMGGS---PLIIGIIIATEAFSQFCAAPLIGHLSDRVGRKRILIVTLAIAAIS 98
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTIS 147
L+ A + + L R + G++ GN+ AY AD T NR + G +G+G I
Sbjct: 99 LLLLANAQCILFILLARTLFGISAGNLSAAAAYIADCTHVRNRRQAIGILTGCIGLGGIV 158
Query: 148 GPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNE---SLPETHRTRNFSLKQLNPFT 204
G V G L+ P Y ++ + L + + + + T + +FS +
Sbjct: 159 GAGVSGWLSRISLGAPIYAAFILVLGAALVAIWGLKDPSTTSRTTDKIASFSAR------ 212
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWT-----PVLIGLAISIMG 259
+L+M L L+ + + G + + F D+F W P + + G
Sbjct: 213 ---AILKMPVLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFIWNGLPFGPKALSYLLMADG 269
Query: 260 LMDILTQIFIMPRLLKLANEDKLIRL--ALVCEIIAYLLFALSAFSKMWPFFILAMFIFA 317
+++I Q+F++ + + +E KLI L AL+C F + + P I A+ +
Sbjct: 270 VINIFVQLFLLGWVSQYFSERKLIILIFALLC-----TGFLTAGIATTIPVLIFAIVCIS 324
Query: 318 FGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQI--YISLGHF--A 373
D++ + LS + + QG + G +QAL A+ I P++GG + Y G +
Sbjct: 325 IADALAKPTYLAALSVHVSPARQGIVIGTAQALIAIADFISPVLGGFVLGYALYGVWIGI 384
Query: 374 PALMGFIFLIIALLVLSKT 392
+ I L+ A++ LSK+
Sbjct: 385 AISVAIIGLVTAMIYLSKS 403
sp|P33449|BMR1_BACSU MULTIDRUG RESISTANCE PROTEIN 1 (MULTIDRUG-EFFLUX TRANSPORTER 1)
>gi|80337|pir||A39705 multidrug resistance protein -
Bacillus subtilis >gi|142606 (M33768)
multidrug-resistance protein (BMR) [Bacillus subtilis]
>gi|409287|gb|AAB81539.1| (L25604) multidrug-efflux
transporter [Bacillus subtilis]
>gi|1303946|dbj|BAA12601| (D84432) Bmr [Bacillus
subtilis] >gi|2634835|emb|CAB14332| (Z99116)
multidrug-efflux transporter [Bacillus subtilis]
Length = 389
Score = 119 bits (295), Expect = 5e-26
Identities = 89/343 (25%), Positives = 161/343 (45%), Gaps = 17/343 (4%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
V+P H V ++A +A+ +P G DRFGRK +++I L ++
Sbjct: 25 VIPVTPTIMNELHLSGTAVGYMVACFAITQLIVSPIAGRWVDRFGRKIMIVIGLLFFSVS 84
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVT-LFAYFADITDEENRTKVFGWTAAAVGVGTI 146
+FG+ ++ MLF+ R++ G++ I+ + A+ ADIT + R K G+ +AA+ G I
Sbjct: 85 EFLFGIGKTVEMLFISRMLGGISAPFIMPGVTAFIADITTIKTRPKALGYMSAAISTGFI 144
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL 206
GP +GG LA + +PF+F A ++ + + E PE + Q F ++
Sbjct: 145 IGPGIGGFLAEVHSRLPFFFAAAFALLAAILSILTLRE--PERNPENQEIKGQKTGFKRI 202
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSL---DSFAWTPVLIGLAISIMGLMDI 263
F + A +++ + + L + S F+L F +T I + I+ ++
Sbjct: 203 FAPM-------YFIAFLIILISSFGLASFESLFALFVDHKFGFTASDIAIMITGGAIVGA 255
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+TQ+ + R + E LIR +L+ + L+F L+ ++ + +F G +
Sbjct: 256 ITQVVLFDRFTRWFGEIHLIRYSLI--LSTSLVFLLTTVHSYVAILLVTVTVFV-GFDLM 312
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
A LSK A +EQG G + ++ V GP+IGG ++
Sbjct: 313 RPAVTTYLSKIA-GNEQGFAGGMNSMFTSIGNVFGPIIGGMLF 354
gi|153053 (M80252) norA1199 protein [Staphylococcus aureus] >gi|153055
(M97169) norA [Staphylococcus aureus]
Length = 388
Score = 115 bits (284), Expect = 9e-25
Identities = 80/319 (25%), Positives = 151/319 (47%), Gaps = 11/319 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L+A +AL +P G+L+D+ G+K I+ I L ++ +F + + +L L R+I G
Sbjct: 43 LVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAIGQNFLILMLSRVIGG 102
Query: 109 LTGGNIVT-LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFG 167
++ G ++ + ADI+ + K FG+ +A + G I GP +GG +A + +PFYF
Sbjct: 103 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
Query: 168 ALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWL 227
+ I + ++++ P+ T F ++L P QL + K + ++L
Sbjct: 163 GALGILAFIMSIVLIHD--PKKVSTNGF--QKLEP--QLLTKINWKVFITPVILTLVLSF 216
Query: 228 PNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLAL 287
A + + S ++ D ++P I +AI+ G+ L QI+ + +K +E I +L
Sbjct: 217 GLSAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL 276
Query: 288 VCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGS 347
+ +I +L ++ W +++ +F G + A S A QG G +
Sbjct: 277 IYSVIVLVLLVIA--DGYWTIMVISFVVF-IGFDMIRPAITNYFSNIA-GDRQGFAGGLN 332
Query: 348 QALQALTRVIGPLIGGQIY 366
++ IGPLI G ++
Sbjct: 333 STFTSMGNFIGPLIAGALF 351
bbs|157398 (S74031) NorA {ISP794, quinolone resistance} [Staphylococcus
aureus, NCTC 8325, Peptide Insertion, 388 aa]
[Staphylococcus aureus]
Length = 388
Score = 113 bits (280), Expect = 3e-24
Identities = 79/319 (24%), Positives = 151/319 (46%), Gaps = 11/319 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L+A +AL +P G+L+D+ G+K I+ I L ++ +F + + +L L R+I G
Sbjct: 43 LVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGG 102
Query: 109 LTGGNIVT-LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFG 167
++ G ++ + ADI+ + K FG+ +A + G I GP +GG +A + +PFYF
Sbjct: 103 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
Query: 168 ALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWL 227
+ I + ++++ P+ T F ++L P QL + K + ++L
Sbjct: 163 GALGILAFIMSIVLIHD--PKKSTTSGF--QKLEP--QLLTKINWKVFITPVILTLVLSF 216
Query: 228 PNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLAL 287
A + + S ++ D ++P I +AI+ G+ L QI+ + +K +E I +L
Sbjct: 217 GLSAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL 276
Query: 288 VCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGS 347
+ ++ +L + + W +++ +F G + A S A QG G +
Sbjct: 277 LYSVVVLILLVFA--NDYWSIMLISFVVF-IGFDMIRPAITNYFSNIA-GERQGFAGGLN 332
Query: 348 QALQALTRVIGPLIGGQIY 366
++ IGPLI G ++
Sbjct: 333 STFTSMGNFIGPLIAGALF 351
sp|P21191|NORA_STAAU QUINOLONE RESISTANCE NORA PROTEIN >gi|97835|pir||A37838 norA
protein - Staphylococcus aureus >gi|216975|dbj|BAA14147|
(D90119) ORF for norA [Staphylococcus aureus]
Length = 388
Score = 113 bits (279), Expect = 4e-24
Identities = 79/319 (24%), Positives = 151/319 (46%), Gaps = 11/319 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L+A +AL +P G+L+D+ G+K I+ I L ++ +F + + +L L R+I G
Sbjct: 43 LVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGG 102
Query: 109 LTGGNIVT-LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFG 167
++ G ++ + ADI+ + K FG+ +A + G I GP +GG +A + +PFYF
Sbjct: 103 MSAGMVMPGVTGLIADISPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
Query: 168 ALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWL 227
+ I + ++++ P+ T F ++L P QL + K + ++L
Sbjct: 163 GALGILAFIMSIVLIHD--PKKSTTSGF--QKLEP--QLLTKINWKVFITPVILTLVLSF 216
Query: 228 PNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLAL 287
A + + S ++ D ++P I +AI+ G+ L QI+ + +K +E I +L
Sbjct: 217 GLSAFETLYSLYTADKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL 276
Query: 288 VCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGS 347
+ ++ +L + + W +++ +F G + A S A QG G +
Sbjct: 277 LYSVVVLILLVFA--NGYWSIMLISFVVF-IGFDMIRPAITNYFSNIA-GERQGFAGGLN 332
Query: 348 QALQALTRVIGPLIGGQIY 366
++ IGPLI G ++
Sbjct: 333 STFTSMGNFIGPLIAGALF 351
gb|AAD55441.1|AF181656_1 (AF181656) BcDNA.LD28419 [Drosophila melanogaster]
Length = 477
Score = 112 bits (277), Expect = 6e-24
Identities = 89/366 (24%), Positives = 168/366 (45%), Gaps = 26/366 (7%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L ++++ F A+P +G LSD +GRKP+LL +G AL YLI+ + + + L R + G
Sbjct: 116 LGSMFSFLQFVASPIVGGLSDYYGRKPVLLACASGIALSYLIWACSSNFALFVLARFVGG 175
Query: 109 LTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNS------- 161
++ GNI + D++ + R + A +G I GP +G L A F +
Sbjct: 176 ISKGNISLCMSVITDVSSVKTRGRGMALVGVAFSLGFIVGPMIGALFAIFSDKSGSTWFV 235
Query: 162 VPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLK-----QLNPFTQLFQLLRMKNLN 216
+P +++ +L+ A + E+LP+ R + S QL F+ +F+ +KN+
Sbjct: 236 LPSLLAFGLAVGDLVVLACCLRETLPKEKRVKEISSALSYGLQLLNFSAIFRFAAIKNVP 295
Query: 217 RLLFAG---------ILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQI 267
+ A + L+L +G L+ ++ F +T + G++ L Q
Sbjct: 296 KKDIAALRSIGLVYFLYLFLYSG-LEFTVTFLMYHKFGYTSMDQAKMFLTTGVIMTLLQG 354
Query: 268 FIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAF 327
++ RL + + I +L + A+++ L+ S+M M +FA + T
Sbjct: 355 SVVRRLPEAKIKGYAI-FSLYLIVPAFVVVGLAEGSRM---LYAGMTLFAISTAFAVTCL 410
Query: 328 NGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALL 387
+SK ++G + G ++L AL R +GP++G + +G + G + LI +
Sbjct: 411 TTLVSKYGNDDQKGSVLGIFRSLGALARALGPVVGCIAFWCVGSRITYIAGGLLLIYPAM 470
Query: 388 VLSKTK 393
L + +
Sbjct: 471 ALQRAR 476
dbj|BAA36484.1| (AB019536) NorA [Staphylococcus aureus]
Length = 388
Score = 109 bits (271), Expect = 3e-23
Identities = 78/319 (24%), Positives = 149/319 (46%), Gaps = 11/319 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L+A +AL +P G+L+D+ G+K I+ I L ++ +F + + +L L R+I G
Sbjct: 43 LVAAFALSQMIISPFGGTLADKLGKKLIICIGLILFSVSEFMFAVGHNFSVLMLSRVIGG 102
Query: 109 LTGGNIVT-LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFG 167
++ G ++ + AD++ + K FG+ +A + G I GP +GG +A + +PFYF
Sbjct: 103 MSAGMVMPGVTGLIADVSPSHQKAKNFGYMSAIINSGFILGPGIGGFMAEVSHRMPFYFA 162
Query: 168 ALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWL 227
+ I + ++++ P+ T F ++L P QL + K ++L
Sbjct: 163 GALGILAFIMSVVLIHD--PKKSTTSGF--QKLEP--QLLTKINWKVFITPAILTLVLAF 216
Query: 228 PNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLAL 287
A + + S ++ ++P I +AI+ G+ L QI+ + +K +E I +L
Sbjct: 217 GLSAFETLYSLYTSYKVNYSPKDISIAITGGGIFGALFQIYFFDKFMKYFSELTFIAWSL 276
Query: 288 VCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGS 347
+ +I +L ++ W +++ +F G + A S A QG G +
Sbjct: 277 IYSVIVLVLLVIA--DGYWTIMVISFVVF-IGFDMIRPAITNYFSNIA-GDRQGFAGGLN 332
Query: 348 QALQALTRVIGPLIGGQIY 366
++ IGPLI G ++
Sbjct: 333 STFTSMGNFIGPLIAGALF 351
ref|NP_032272.1|| hippocampus abundant gene transcript 1 >gi|2506078|dbj|BAA22622|
(D88315) tetracycline transporter-like protein [Mus
musculus]
Length = 490
Score = 106 bits (262), Expect = 4e-22
Identities = 75/323 (23%), Positives = 149/323 (45%), Gaps = 11/323 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
+ + L +F +AP +G+LSD +GRK LL+++ + + + S W F + G
Sbjct: 77 IQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKI--SPWWYFAVISVSG 134
Query: 109 LTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH-FGNSVPFYFG 167
+ +FAY ADIT E R+ +G +A ++ P +G L +G+S+
Sbjct: 135 VFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGQMYGDSLVVVLA 194
Query: 168 ALISIANLLYGAFVMNESLPETHRTRNF----SLKQLNPFTQLFQLLRMKNLNRLLFAGI 223
I++ ++ + + ESLPE R ++ S +Q +PF L ++ + + +
Sbjct: 195 TAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVLLICITVF 254
Query: 224 LLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLI 283
L +LP + + ++P + I+++G++ I+ Q ++ L++ I
Sbjct: 255 LSYLPEAGQYSSFFLYLKQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTI 314
Query: 284 RLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKL 343
L L +I+ + + P+ + A A SI A + +S++A + +QG +
Sbjct: 315 LLGLGFQILQLAWYGFGS----EPWMMWAAGAVAAMSSITFPAVSALVSRTADADQQGVV 370
Query: 344 QGGSQALQALTRVIGPLIGGQIY 366
QG ++ L +GP + G I+
Sbjct: 371 QGMITGIRGLCNGLGPALYGFIF 393
gb|AAD26811.1|AF119247_1 (AF119247) tetracycline resistance protein TetG [Salmonella
typhimurium DT104]
Length = 253
Score = 101 bits (249), Expect = 1e-20
Identities = 69/245 (28%), Positives = 114/245 (46%), Gaps = 10/245 (4%)
Query: 78 LISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWT 137
L SLAG+A+ Y I A LW+L++GR++ G+TG + AD T E +R + FG+
Sbjct: 1 LASLAGAAVDYTIMASAPVLWVLYIGRLVSGVTGATGAVAASTIADSTGEGSRARWFGYM 60
Query: 138 AAAVGVGTISGPTVGGLLAHFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRTRNFS 196
A G G I+GP +GG+L PF AL++ A LL F L ETH + +
Sbjct: 61 GACYGAGMIAGPALGGMLGGISAHAPFIAAALLNGFAFLLACIF-----LKETHHSHGGT 115
Query: 197 LK--QLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLA 254
K ++ PF L ++ L L ++ L A+ + D F W +GL+
Sbjct: 116 GKPVRIKPFVLLRLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLS 175
Query: 255 ISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMF 314
++ G + Q F+ L E + + + + ++L A + ++ W F + +
Sbjct: 176 LAAFGATHAIFQAFVTGPLSSRLGERRTLLFGMAADATGFVLLAFA--TQGWMVFPILLL 233
Query: 315 IFAFG 319
+ A G
Sbjct: 234 LAAGG 238
gi|3319438 (AF077539) similar to serine/threonine dehydratases (Pfam:
S_T_dehydratase.hmm, score: 21.58) [Caenorhabditis
elegans]
Length = 1010
Score = 95.6 bits (234), Expect = 7e-19
Identities = 74/323 (22%), Positives = 146/323 (44%), Gaps = 18/323 (5%)
Query: 55 LCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNI 114
L +F +AP +G+LSD +GRK L++++ + + I L S W F + GL
Sbjct: 143 LLSFLSAPLVGALSDVWGRKAFLILTVLCTCMP--IPCLKISPWWYFSLFSLSGLFSVTF 200
Query: 115 VTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH-FGNSVPFYFGALISIA 173
+ AY ADITD+ R+ +G +A ++ P +G ++ +G+S+ ++S+A
Sbjct: 201 SVILAYVADITDKSERSSAYGLVSATFAASLVTSPALGAYISEVYGDSLVVLLATIVSVA 260
Query: 174 NLLYGAFVMNESLPETHRTRN---------FSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
++++ + ESLP T + F+ + +PF L + K + +L L
Sbjct: 261 DVIFIVLFVPESLPSRRNTGSVSQITPNEVFNWQSADPFGSLRIVWEDKLVLQLATIVFL 320
Query: 225 LWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIR 284
+LP + + ++P + + I ++G++ ++ Q + L I
Sbjct: 321 SYLPESGQFSCFFVYLKLVVGFSPEAVAMYIGLVGILSVVAQTGFLHCLTSRFGTKHTIT 380
Query: 285 LALVCEIIAYLLFAL-SAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKL 343
L L+ ++I + L + + MW +LA SI + + +S + +QG +
Sbjct: 381 LGLIFQLIQLTWYGLGTQYWMMWSAGVLAAM-----SSITYPSISAFVSILSDKDKQGTV 435
Query: 344 QGGSQALQALTRVIGPLIGGQIY 366
QG ++ L GP + G ++
Sbjct: 436 QGVITGIRGLCTGFGPALFGTVF 458
dbj|BAA32779| (AB012083) ITM [Homo sapiens]
Length = 408
Score = 92.8 bits (227), Expect = 5e-18
Identities = 89/361 (24%), Positives = 152/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +D+ G + L +S + YL+ A S +++LF
Sbjct: 48 LQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 107
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 108 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 163
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 164 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIA------S 217
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ R+ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 218 LLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGL 277
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ L+R +++ I+ L A++ S ++ F +L + F +
Sbjct: 278 VIGQLSSHFSEEVLLRASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 334
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 335 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 394
Query: 384 I 384
+
Sbjct: 395 L 395
gb|AAC14725| (AF059663) tumor suppressing STF cDNA 5 [Homo sapiens]
Length = 424
Score = 92.8 bits (227), Expect = 5e-18
Identities = 89/361 (24%), Positives = 152/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +D+ G + L +S + YL+ A S +++LF
Sbjct: 64 LQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 123
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 124 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 179
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 180 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIA------S 233
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ R+ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 234 LLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGL 293
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ L+R +++ I+ L A++ S ++ F +L + F +
Sbjct: 294 VIGQLSSHFSEEVLLRASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 350
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 351 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 410
Query: 384 I 384
+
Sbjct: 411 L 411
ref|NP_002546.1|| organic cation transporter-like 2 >gi|2921449 (AF037064) organic
cation transporter-like protein 2 [Homo sapiens]
Length = 424
Score = 92.1 bits (225), Expect = 8e-18
Identities = 88/361 (24%), Positives = 152/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +D+ G + L +S + YL+ A S +++LF
Sbjct: 64 LQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 123
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 124 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 179
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 180 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIA------S 233
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ R+ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 234 LLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGL 293
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ ++R +++ I+ L A++ S ++ F +L + F +
Sbjct: 294 VIGQLSSHFSEEVMLRASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 350
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 351 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 410
Query: 384 I 384
+
Sbjct: 411 L 411
gi|3158349 (AF030302) p45-BWR1A [Homo sapiens]
Length = 424
Score = 90.9 bits (222), Expect = 2e-17
Identities = 88/361 (24%), Positives = 152/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +++ G + L +S + YL+ A S +++LF
Sbjct: 64 LQTTFGVLQLLGGPVFGRFANQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 123
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 124 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 179
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 180 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFDLKAIA------S 233
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ R+ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 234 LLRLPDVPRIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAQAGYLMSFFGLLQMVTQGL 293
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ L+R +++ I+ L A++ S ++ F +L + F +
Sbjct: 294 VIGQLSSHFSEEVLLRASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 350
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 351 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 410
Query: 384 I 384
+
Sbjct: 411 L 411
emb|CAA23425| (V00083) tetracycline resistance [synthetic construct]
Length = 338
Score = 90.9 bits (222), Expect = 2e-17
Identities = 65/218 (29%), Positives = 99/218 (44%), Gaps = 6/218 (2%)
Query: 149 PTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQ 208
P GGLL PF A+++ NLL G F+M ES R L+ NP +
Sbjct: 90 PVAGGLLGAISLHAPFLAAAVLNGLNLLLGCFLMQES--HKGERRPMPLRAFNPVSSFRW 147
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
M + L+ ++ L A+ F D F W+ +IGL++++ G++ L Q F
Sbjct: 148 ARGMTIVAALMTVFFIMQLVGQVPAALWVIFGEDRFRWSATMIGLSLAVFGILHALAQAF 207
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
+ K E + I + + + Y+L A + ++ W F + M + A G I A
Sbjct: 208 VTGPATKRFGEKQAIIAGMAADALGYVLLAFA--TRGWMAFPI-MILLASG-GIGMPALQ 263
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
LS+ QG+LQG AL +LT + GPLI IY
Sbjct: 264 AMLSRQVDDDHQGQLQGSLAALTSLTSITGPLIVTAIY 301
Score = 45.7 bits (106), Expect = 7e-04
Identities = 30/108 (27%), Positives = 50/108 (45%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
+I SL L A G + RFG K ++ +A ALGY++ A WM F
Sbjct: 189 MIGLSLAVFGILHALAQAFVTGPATKRFGEKQAIIAGMAADALGYVLLAFATRGWMAFPI 248
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTV 151
I+ G + L A + D++++ ++ G AA + +I+GP +
Sbjct: 249 MILLASGGIGMPALQAMLSRQVDDDHQGQLQGSLAALTSLTSITGPLI 296
dbj|BAA32780| (AB012084) ITM [Mus musculus]
Length = 406
Score = 90.1 bits (220), Expect = 3e-17
Identities = 88/356 (24%), Positives = 154/356 (42%), Gaps = 28/356 (7%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLIS-LAGSALGYLIFGLAG----SLWMLFLG 103
L + + P G +D+ G + L +S LA SAL L+ +++LF
Sbjct: 48 LQTTFGVLQLLGGPVFGRFADQCGARAALSLSFLAASALYLLLVASCSPALPGVFLLFAS 107
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLL-AHFGNSV 162
RI L + D+T R G G+G I G +GG L +G
Sbjct: 108 RIPSALMH-TLPAAQMVITDLTAPTERPAALGRLGLCFGIGIIFGSLLGGTLNTAYGIQC 166
Query: 163 PFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLF-- 220
P A+++ L GA + +P T T+ S++ + +K + RLL
Sbjct: 167 P----AILAFVVTLLGAVLSFTCVPAT--TKEASVQSAPQGGTKASVFDLKAITRLLLLP 220
Query: 221 -------AGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRL 273
++ LP+G + S S+D F G +S G++ ++ Q ++ RL
Sbjct: 221 RVLPVFLVKVISGLPSGLFLVMFSIISMDFFQLEAAQAGYLMSFFGILQMMIQGLVIGRL 280
Query: 274 LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSK 333
E+ L+R +++ + L AL + S + F++ +F+ + L+K
Sbjct: 281 STHFPEEALLRSSVLVFAVVGLGMALMS-SVLHFCFLMPGLVFSL--CTLNVVTDSMLTK 337
Query: 334 SATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVL 389
+ ++S+ G + G S ++Q LTR +GP +GG +Y S G + G + L++ LLVL
Sbjct: 338 AVSASDTGTMLGLSASVQPLTRTLGPTLGGLLYRSYG---VPIFGHVQLMVNLLVL 390
ref|NP_032793.1|| organic cationic transporter-like 2 >gi|2921451 (AF037065) organic
cation transporter-like protein 2 [Mus musculus]
Length = 409
Score = 90.1 bits (220), Expect = 3e-17
Identities = 88/355 (24%), Positives = 154/355 (42%), Gaps = 27/355 (7%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLIS-LAGSALGYLIFGLAG----SLWMLFLG 103
L + + P G +++ G + L +S LA SAL L+ +++LF
Sbjct: 52 LQTTFGVLQLLGGPVFGRFANQCGARAALSLSFLAASALYLLLVASCSPALPGVFLLFAS 111
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLL-AHFGNSV 162
RI L I D+T R G G+G + G +GG L +G
Sbjct: 112 RIPSALMH-TIPAAQMVITDLTAPTERPAALGRLGLCFGIGIMFGSLLGGTLNTAYGIQC 170
Query: 163 PFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLL--- 219
P A+++ L GA + +P T T+ S++ + +K + RLL
Sbjct: 171 P----AILAFVVTLLGAVLSFTCVPAT--TKEASVQSAPQGGTKASVFDLKAITRLLLLP 224
Query: 220 -----FAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLL 274
F + LP+G + S S+D F G +S G++ ++ Q ++ RL
Sbjct: 225 RVLPVFLSVFSGLPSGLFLVMFSIISMDFFQLEAAQAGYLMSFFGILQMMIQGLVIGRLS 284
Query: 275 KLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKS 334
E+ L+R +++ + L AL + S + F++ +F+ + L+K+
Sbjct: 285 THFPEEALLRSSVLVFAVVGLGMALMS-SVLHFCFLMPGLVFSL--CTLNVVTDSMLTKA 341
Query: 335 ATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVL 389
++S+ G + G S ++Q LTR +GP +GG +Y S G + G + L++ LLVL
Sbjct: 342 VSASDTGTMLGLSASVQPLTRTLGPTLGGLLYRSYG---VPIFGHVQLMVNLLVL 393
gi|2583225 (AF028739) multi-membrane spanning polyspecific transporter [Mus
musculus]
Length = 406
Score = 88.9 bits (217), Expect = 7e-17
Identities = 88/356 (24%), Positives = 154/356 (42%), Gaps = 28/356 (7%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLIS-LAGSALGYLIFGLAG----SLWMLFLG 103
L + + P G +D+ G + L +S LAGSAL L+ +++LF
Sbjct: 48 LQTTFGVLQLLGGPVFGRFADQCGARAALSLSFLAGSALYLLLVASCSPALPGVFLLFAS 107
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLL-AHFGNSV 162
RI L + D+T R G G+G I G +GG L +G
Sbjct: 108 RIPSALMH-TLPAAQMVITDLTAPTERPAALGRLGLCFGIGIIFGSLLGGTLNTAYGIQC 166
Query: 163 PFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLF-- 220
P A+++ L A + +P T T+ S++ + +K + RLL
Sbjct: 167 P----AILAFVVTLLRAVLSFTCVPAT--TKEASVQSAPQGGTKGSVFDLKAITRLLLLP 220
Query: 221 -------AGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRL 273
++ LP+G + S S+D F G +S G++ ++ Q ++ RL
Sbjct: 221 RVLPVFLVKVISGLPSGLFLVMFSIISMDFFQLEAAQAGYLMSFFGILQMMIQGLVIGRL 280
Query: 274 LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSK 333
E+ L+R +++ + L AL + S + F++ +F+ + L+K
Sbjct: 281 STHFPEEALLRSSVLVFAVVGLGMALMS-SVLHFCFLMPGLVFSL--CTLNVVTDSMLTK 337
Query: 334 SATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVL 389
+ ++S+ G + G S ++Q LTR +GP +GG +Y S G + G + L++ LLVL
Sbjct: 338 AVSASDTGTMLGLSASVQPLTRTLGPTLGGLLYRSYG---VPIFGHVQLMVNLLVL 390
gi|3219699 (AF070479) efflux transporter like protein [Homo sapiens]
Length = 424
Score = 88.5 bits (216), Expect = 9e-17
Identities = 87/361 (24%), Positives = 151/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +D+ G + L +S + YL+ A S +++LF
Sbjct: 64 LQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 123
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 124 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 179
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 180 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFELKGIA------S 233
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ ++ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 234 LLRLPDVPKIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAKAGYLMSFFGLLQMVTQGL 293
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ L+ +++ I+ L A++ S ++ F +L + F +
Sbjct: 294 VIGQLSSHFSEEVLLGASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 350
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 351 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 410
Query: 384 I 384
+
Sbjct: 411 L 411
gi|2583223 (AF028738) imprinted multi-membrane spanning polyspecific
transporter-related protein [Homo sapiens]
Length = 408
Score = 88.5 bits (216), Expect = 9e-17
Identities = 87/361 (24%), Positives = 151/361 (41%), Gaps = 38/361 (10%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS-----LWMLFLG 103
L + + P G +D+ G + L +S + YL+ A S +++LF
Sbjct: 48 LQTTFGVLQLLGGPVFGRFADQRGARAALTLSFLAALALYLLLAAASSPALPGVYLLFAS 107
Query: 104 RIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFG 159
R L G + TL A ITD E R G GVG I G +GG L++ +G
Sbjct: 108 R----LPGALMHTLPAAQMVITDLSAPEERPAALGRLGLCFGVGVILGSLLGGTLVSAYG 163
Query: 160 NSVPFYFGALISIANLLYGAFVMNES-----------LPETHRTRNFSLKQLNPFTQLFQ 208
P AL ++ + + S LP R F LK +
Sbjct: 164 IQCPAILAALATLLGAVLSFTCIPASTKGAKTDAQAPLPGGPRASVFELKGIA------S 217
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
LLR+ ++ ++ + P G + S S+D F G +S GL+ ++TQ
Sbjct: 218 LLRLPDVPKIFLVKVASNCPTGLFMVMFSIISMDFFQLEAAKAGYLMSFFGLLQMVTQGL 277
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN 328
++ +L +E+ L+ +++ I+ L A++ S ++ F +L + F +
Sbjct: 278 VIGQLSSHFSEEVLLGASVLVFIVVGL--AMAWMSSVFHFCLLVPGL-VFSLCTLNVVTD 334
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYIS-----LGHFAPALMGFIFLI 383
L K+ ++S+ G + G ++Q L R +GP +GG +Y S GH A+ + L+
Sbjct: 335 SMLIKAVSTSDTGTMLGLCASVQPLLRTLGPTVGGLLYRSFGVPVFGHVQVAINTLVLLV 394
Query: 384 I 384
+
Sbjct: 395 L 395
gi|1072210 (U40945) coded for by C. elegans cDNA yk74b9.3; coded for by C.
elegans cDNA yk74b9.5; similar to repeat of calcium
channel alpha subunits; similar to tetracycline
resistance protein; similar to hypothetical protein in
HSP30-PMP1 region (SP...
Length = 445
Score = 88.5 bits (216), Expect = 9e-17
Identities = 87/380 (22%), Positives = 161/380 (41%), Gaps = 29/380 (7%)
Query: 35 PFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLA 94
P + +D+ L ++++ F ++P LGSLSD +GR+ ++ + + + Y+ + A
Sbjct: 68 PHSERYDKVFFGGFLGSLFSALQFISSPTLGSLSDIYGRRAVISLCCIMTFISYVNWLKA 127
Query: 95 GSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGL 154
L RI+ GL+ GNI A +D+ E+ K + +G + GP +G
Sbjct: 128 DIFAYFVLSRILGGLSKGNINVATAIVSDVYSPEDHPKGMALIGISYSLGFLIGPMIGAY 187
Query: 155 LAHFGN-SVPFYFGALIS-IANLLYGAFVM----------NESLPETHRTRNFSLKQLNP 202
+ + PF + A+ S I +L F+ +SL + +TR K+L
Sbjct: 188 FSTIASIDSPFAYPAMFSIILTILEFGFLFFLPETLDLKEQKSLDDIKKTR----KELVT 243
Query: 203 FTQLFQLL-------RMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAI 255
LFQ R + + ++ + L L+ + + F + + G
Sbjct: 244 PKDLFQFTAVNAPQERKQEMQKVGWIYFLFLFLYSGLEFTLPFLTHIRFDFDNMQQGKVY 303
Query: 256 SIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILA-MF 314
GL+ + Q + R + + + + C I AYLL A++ P + A +F
Sbjct: 304 LFTGLLMLPIQAKYV-RKTPIEKQKAVAEFGIACIIPAYLLVAVA----KTPLVLYAGLF 358
Query: 315 IFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAP 374
+A + T+ + SE+G L G ++L L R +GP+I + LG
Sbjct: 359 FYAIASATVVTSLTSLVHVIYPQSEKGVLAGIFRSLGCLARALGPVISSTFFWLLGATTC 418
Query: 375 ALMGFIFLIIALLVLSKTKS 394
+MG L I L++L + ++
Sbjct: 419 YIMGAFLLFIPLILLKRLEN 438
ref|NP_001111.1|| tetracycline transporter-like protein >gi|1130693|emb|CAA92577.1|
(Z68280) Human tetracycline transporter-like protein
mRNA [Homo sapiens]
Length = 455
Score = 85.8 bits (209), Expect = 6e-16
Identities = 81/353 (22%), Positives = 154/353 (42%), Gaps = 32/353 (9%)
Query: 35 PFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLA 94
P ++ L + + +++ F AP G+ SD GR+P++L+ L G A Y ++ +
Sbjct: 78 PVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVMLLCLMGVATSYAVWATS 137
Query: 95 GSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGL 154
S R+I G++ GN+ A AD+ R++ A +GV G T+G +
Sbjct: 138 RSFAAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQ----GMAVIGVAFSLGFTLGPM 193
Query: 155 LAHFGNSVPF----YFGALISIANLLYGAFVMNESLPETHRTRNFSL------KQLNPFT 204
L G S+P +F L + ++LL+ + E+LP R + +L L+P
Sbjct: 194 L---GASLPLEMAPWFALLFAASDLLFIFCFLPETLPLEKRAPSIALGFRDAADLLSPLA 250
Query: 205 QL-FQLL----------RMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGL 253
L F + R+ +L RL L L+ +S + F ++ + G
Sbjct: 251 LLRFSAVARGQDPPSGDRLSSLRRLGLVYFLYLFLFSGLEYTLSFLTHQRFQFSSLQQGK 310
Query: 254 AISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAM 313
++GL + T R + E ++ AL+ + A+LL + + P L +
Sbjct: 311 MFFLIGL-TMATIQGAYARRIHPGGEVAAVKRALLLLVPAFLLI---GWGRSLPVLGLGL 366
Query: 314 FIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+++F ++ + ++ + ++G + G ++L AL R GPL+ +Y
Sbjct: 367 LLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVY 419
pir||I54353 tetracycline transporter-like protein - human >gi|307502 (L11669)
tetracycline transporter-like protein [Homo sapiens]
Length = 455
Score = 85.8 bits (209), Expect = 6e-16
Identities = 81/353 (22%), Positives = 154/353 (42%), Gaps = 32/353 (9%)
Query: 35 PFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLA 94
P ++ L + + +++ F AP G+ SD GR+P++L+ L G A Y ++ +
Sbjct: 78 PVEKRYNSVLFGGLIGSAFSVLQFLCAPLTGATSDCLGRRPVMLLCLMGVATSYAVWATS 137
Query: 95 GSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGL 154
S R+I G++ GN+ A AD+ R++ A +GV G T+G +
Sbjct: 138 RSFAAFLASRLIGGISKGNVSLSTAIVADLGSPLARSQ----GMAVIGVAFSLGFTLGPM 193
Query: 155 LAHFGNSVPF----YFGALISIANLLYGAFVMNESLPETHRTRNFSL------KQLNPFT 204
L G S+P +F L + ++LL+ + E+LP R + +L L+P
Sbjct: 194 L---GASLPLEMAPWFALLFAASDLLFIFCFLPETLPLEKRAPSIALGFRDAADLLSPLA 250
Query: 205 QL-FQLL----------RMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGL 253
L F + R+ +L RL L L+ +S + F ++ + G
Sbjct: 251 LLRFSAVARGQDPPSGDRLSSLRRLGLVYFLYLFLFSGLEYTLSFLTHQRFQFSSLQQGK 310
Query: 254 AISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAM 313
++GL + T R + E ++ AL+ + A+LL + + P L +
Sbjct: 311 MFFLIGL-TMATIQGAYARRIHPGGEVAAVKRALLLLVPAFLLI---GWGRSLPVLGLGL 366
Query: 314 FIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+++F ++ + ++ + ++G + G ++L AL R GPL+ +Y
Sbjct: 367 LLYSFAAAVVVPCLSSVVAGYGSPGQKGTVMGTLRSLGALARAAGPLVAASVY 419
sp|P54559|YQJV_BACSU HYPOTHETICAL 44.7 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
>gi|1303973|dbj|BAA12628| (D84432) YqjV [Bacillus
subtilis] >gi|2634808|emb|CAB14305| (Z99116) similar to
multidrug resistance protein [Bacillus subtilis]
Length = 410
Score = 85.0 bits (207), Expect = 1e-15
Identities = 91/370 (24%), Positives = 162/370 (43%), Gaps = 46/370 (12%)
Query: 37 ANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGS 96
A+A L++ + ++ L +F+ G +SD+FGRK ++L+S+ G L + F A +
Sbjct: 42 ASASYAGLVIAASSSVGILASFYG----GYISDKFGRKNMMLVSIFGWMLVFAGFAAASN 97
Query: 97 LWMLFLGRIIDGLTGGNIVTLF-----AYFADITDEENRTKVFGWTAAAVGVGTISGPTV 151
LW+ F+ ++GL +LF A +D+T+E+ R VF AA+ +G + GP +
Sbjct: 98 LWVFFVVNALNGL----CKSLFEPASKALLSDMTEEKTRLLVFNLRYAAINIGVVFGPVL 153
Query: 152 GGLLAHFGNSVPFYFGALISIANLLYG-----AFVMNESLPETHRTRNFSLKQLNPFTQL 206
G ++ PF A+I LYG F + SL ++RN S++ +
Sbjct: 154 GLYFGSSQSTTPFLVPAVI---YGLYGIVLALQFKKHPSLSAPAQSRNMSVR------EA 204
Query: 207 FQLLRMKNLNRLLFAGILLWLPNGALQAIISQFS--LDSFAWTPVLIGLAISIMGLMDIL 264
F + + L + GI L SQFS + LIG + GLM L
Sbjct: 205 FMVTQKDYLFTIALVGITLCTFG------YSQFSSTFPQYMAQNPLIGNGTKLYGLMLTL 258
Query: 265 TQIFIMPRLLKLANEDKLIRLALVC-----EIIAYLLFALSAFSKMWPFFILAMFIFAFG 319
I ++ + + K R + +C ++ + A+ S P ++ + F G
Sbjct: 259 NAIVVLATQFPIVHFAK--RFSPLCSLMLGNVMVSISMAIFTVSHGVPSIVMIVITFTIG 316
Query: 320 DSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGF 379
+ + + + + + A +G G+ L VIGP +GG I + F +
Sbjct: 317 EVLLFSMMDLYVDQIAKPGLKG-TYFGAIGFPQLGNVIGPWVGG---ICIDLFGAGRPIY 372
Query: 380 IFLIIALLVL 389
IF +++ + L
Sbjct: 373 IFSVLSGITL 382
emb|CAB73802.1| (AL139078) putative efflux protein [Campylobacter jejuni]
Length = 431
Score = 83.9 bits (204), Expect = 2e-15
Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 19/364 (5%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+ A++ +V L+ +YAL G LSD+ GRK +LI L +
Sbjct: 24 PVLSLYALKLEGANE--FLVGLLVGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFII 81
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
G LI A +++ + LGR++ G G A +D EENR K + +G+
Sbjct: 82 GSLICSFAENIYTMLLGRMLQG-AGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFA 140
Query: 147 SGPTVGGLL-AHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
+ + L+ A +G S F A +S+ ++ V+ + TH N T
Sbjct: 141 ASMVISPLMSAKWGLSSLFDLSAALSLLCIILLYTVVPKENKITHE---------NEKTP 191
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
F L++ KNL + + + I + + + + S + +
Sbjct: 192 FFHLIKQKNLALMNLTNFMQKMLMSIAFLSIPIILVKHLGFASDKLWIVYSASMVAGFIA 251
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
F K +++ L +V I++YL F AFS FFI+A+ IF G ++
Sbjct: 252 MGFAGSLGEKKGLAKQILLLGIVFFILSYLFF---AFSNSIDFFIIAVVIFFIGFNLHEP 308
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIA 385
SK E+G G A IG +IGG I++ L L+ I +I+A
Sbjct: 309 IMQSCASKFCKVHEKGAALGLFNAFGYGGSFIGGIIGG-IFLHLDTL--NLLAIILVILA 365
Query: 386 LLVL 389
L+ L
Sbjct: 366 LIWL 369
gi|4193955 (AF113952) multidrug-efflux transporter [Campylobacter jejuni]
Length = 431
Score = 83.9 bits (204), Expect = 2e-15
Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 19/364 (5%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+ A++ +V L+ +YAL G LSD+ GRK +LI L +
Sbjct: 24 PVLSLYALKLEGANE--FLVGLLVGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFII 81
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
G LI A +++ + LGR++ G G A +D EENR K + +G+
Sbjct: 82 GSLICSFAENIYTMLLGRMLQG-AGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFA 140
Query: 147 SGPTVGGLL-AHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
+ + L+ A +G S F A +S+ ++ V+ + TH N T
Sbjct: 141 ASMVISPLMSAKWGLSSLFDLSAALSLLCIILLYTVVPKENKITHE---------NEKTP 191
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
F L++ KNL + + + I + + + + S + +
Sbjct: 192 FFHLIKQKNLALMNLTNFMQKMLMSIAFLSIPIILVKHLGFASDKLWIVYSASMVAGFIA 251
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
F K +++ L +V I++YL F AFS FFI+A+ IF G ++
Sbjct: 252 MGFAGSLGEKRGLAKQILLLGIVFFILSYLFF---AFSNSIDFFIIAVVIFFIGFNLHEP 308
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIA 385
SK E+G G A IG +IGG I++ L L+ I +I+A
Sbjct: 309 IMQSCASKFCKVHEKGAALGLFNAFGYGGSFIGGIIGG-IFLHLDTL--NLLAIILVILA 365
Query: 386 LLVL 389
L+ L
Sbjct: 366 LIWL 369
emb|CAA07482| (AJ007367) multi-drug resistance efflux pump [Streptococcus
pneumoniae]
Length = 399
Score = 81.5 bits (198), Expect = 1e-14
Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 23/356 (6%)
Query: 27 PVVPFMVAPFANAHDQALIVTSL-MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
P +P V Q L +++ A+ +P G L+D++GRKP+++ AG A
Sbjct: 29 PFMPIFVENLGVGSQQVAFYAGLAISVSAISAALFSPIWGILADKYGRKPMMI--RAGLA 86
Query: 86 LGYLIFGLA---GSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVG 142
+ + GLA W++FL R+++G+ G + A A +E G + V
Sbjct: 87 MTITMGGLAFVPNIYWLIFL-RLLNGVFAGFVPNATALIASQVPKEKSGSALGTLSTGVV 145
Query: 143 VGTISGPTVGGLLAH-FG-NSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQL 200
GT++GP +GG +A FG +V G+ + +A +L F+ + P + ++
Sbjct: 146 AGTLTGPFIGGFIAELFGIRTVFLLVGSFLFLAAILTICFIKEDFQP-------VAKEKA 198
Query: 201 NPFTQLFQLLRMKNLNRLLF-AGILLWLPNGALQAIISQFSLDSFAWTPVLI--GLAISI 257
P +LF ++ L LF ++ ++ I++ + D +L GL +S
Sbjct: 199 IPTKELFTSVKYPYLLLNLFLTSFVIQFSAQSIGPILALYVRDLGQTENLLFVSGLIVSS 258
Query: 258 MGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFA 317
MG +++ +M +L +L+ +A +I YLL A +A S + L F+F
Sbjct: 259 MGFSSMMS-AGVMGKLGDKVGNHRLLVVAQFYSVIIYLLCA-NASSPLQ--LGLYRFLFG 314
Query: 318 FGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFA 373
G N LSK + ++ +Q L V+GP+ G + G+ A
Sbjct: 315 LGTGALIPGVNALLSKMTPKAGISRVFAFNQVFFYLGGVVGPMAGSAVAGQFGYHA 370
sp|P25744|YCEE_ECOLI HYPOTHETICAL 43.9 KD PROTEIN IN MSYB-HTRB INTERGENIC REGION (ORF1)
>gi|95972|pir||B42290 probable integral membrane protein
- Escherichia coli >gi|42029|emb|CAA42562| (X59939) ORF1
[Escherichia coli] >gi|1787291 (AE000206) putative
transport protein [Escherichia coli]
>gi|4062627|dbj|BAA35851| (D90742) Probable integral
membrane protein. [Escherichia coli]
>gi|4062636|dbj|BAA35862| (D90743) Probable integral
membrane protein. [Escherichia coli]
Length = 408
Score = 81.5 bits (198), Expect = 1e-14
Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 35/376 (9%)
Query: 27 PVVPFMVAPFANAHDQALIVTS--LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
P +P V AL + S + +I L + A+P G L+DR GRK +LL S G
Sbjct: 35 PFLPLYVEQLGVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGM 94
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVG 144
+ ++ GLA ++W + R + GL GG + A I + R K GW + G
Sbjct: 95 GIVMVLMGLAQNIWQFLILRALLGLLGGFVPNANAL---IATQVPRNK-SGWALGTLSTG 150
Query: 145 TIS----GPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ 199
+S GP GGLLA +G F+ A + I F + E + +++
Sbjct: 151 GVSGALLGPMAGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMRE 210
Query: 200 LNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLD---SFAWTPVLIGLAIS 256
+ + L K + L +++ + G++ I++ + + + + + G+ S
Sbjct: 211 V-----VTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIAS 265
Query: 257 IMGLMDILTQIFIMPRLLKLANE---DKLIRLALVCEIIAYLLFALSAFSKMWPFFILAM 313
+ G+ +L+ PRL KL + +K++ AL+ ++ LL +S IL
Sbjct: 266 VPGVAALLS----APRLGKLGDRIGPEKILITALIFSVL--LLIPMSYVQTPLQLGIL-R 318
Query: 314 FIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFA 373
F+ D A L ++++ G++ +Q+ + + V GPL+G I + G A
Sbjct: 319 FLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRA 378
Query: 374 PALMGFIFLIIALLVL 389
+FL+ A +VL
Sbjct: 379 ------VFLVTAGVVL 388
dbj|BAA22257| (AB000617) YceJ [Bacillus subtilis] >gi|2632582|emb|CAB12090|
(Z99105) similar to multidrug-efflux transporter
[Bacillus subtilis]
Length = 390
Score = 80.4 bits (195), Expect = 3e-14
Identities = 95/363 (26%), Positives = 150/363 (41%), Gaps = 18/363 (4%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAI-YALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
SP++P + F + D + + S A+ YAL F A P +SDR RK ++L LAG
Sbjct: 22 SPLLPLLQDQFHVSTDLSGWMVSAYALGYALFAFIAGP----ISDRLNRKTVMLWGLAGF 77
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGV 143
+ + G+A S + L R G++ + ++A I K G A +
Sbjct: 78 IVSTFLCGIAPSFAAMCLFRFAAGVSAAFVTPQIWASIPVIVQPSQIIKGMGIATAGLAA 137
Query: 144 GTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPF 203
+ G +GG LA F PF+ + S+ LL A VM P R +NP+
Sbjct: 138 SQMLGLPIGGFLASFTWHTPFFVLSACSLILLLILAAVMPGIRPSEPLARP---SIVNPY 194
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
+LF L + +L A L N A + + + + T IG A+ ++GL ++
Sbjct: 195 RELFSL---PKTSVILLAYFLFQTGNFASFSFLGTWLSADYHLTVSQIGAAMLVLGLGNM 251
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
L + KL LI L ++ L FAL F + F + A F F +
Sbjct: 252 LGSLIGSRVSEKLGMFKTLISGML---LMGALYFALPFFPNL--FLVEAGFFLTFFTAGI 306
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
+ +S + +G + S A +G I G +Y S HF A+ GF ++
Sbjct: 307 IFPLMMGVFQSIAPNARGTIASLSNAAMYAGTTVGTSIAGFLYQSTQHFG-AVTGFTAIL 365
Query: 384 IAL 386
L
Sbjct: 366 FIL 368
sp|P77726|YAJR_ECOLI HYPOTHETICAL 49.0 KD PROTEIN IN ABPA-CYOE INTERGENIC REGION
>gi|1773111 (U82664) hypothetical protein [Escherichia
coli] >gi|1786630 (AE000149) putative transport protein
[Escherichia coli]
Length = 456
Score = 80.4 bits (195), Expect = 3e-14
Identities = 87/370 (23%), Positives = 158/370 (42%), Gaps = 28/370 (7%)
Query: 31 FMVAPFANAHDQAL------IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
FMV P + AL ++ + IY L G LSDR GRKP+++ LA
Sbjct: 31 FMVLPVLTTYGMALQGASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVF 90
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVG 144
A G +I L+ S+W + LGR + G +G + A +D+T E+NRTK + + G+
Sbjct: 91 AAGSVIAALSDSIWGIILGRALQG-SGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGIT 149
Query: 145 TISGPTVGGLLAH-FGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPF 203
+G ++ H G F+ A+++ + +V+ S TH S F
Sbjct: 150 FAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVVPNS--STHVLNRESGMVKGSF 207
Query: 204 TQLFQLLRMKNLN-RLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMD 262
+++ R+ LN ++ ILL AL ++ + V + + G
Sbjct: 208 SKVLAEPRLLKLNFGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFG--- 264
Query: 263 ILTQIFIMPRLLKLANEDKLIRLALVCE--IIAYLLFALSAFSKMWPFFI-LAMFIFAFG 319
++P ++ + K+ ++ + C I+ + +A ++ W + + +F AF
Sbjct: 265 -----SVVPFIIYAEVKRKMKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAF- 318
Query: 320 DSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQI---YISLGHF-APA 375
++ +SK + + +G G Q L IG +GG I + G F A A
Sbjct: 319 -NLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWINGMFDGQGVFLAGA 377
Query: 376 LMGFIFLIIA 385
++ ++L +A
Sbjct: 378 MLAAVWLTVA 387
sp|P40760|YUXJ_BACSU HYPOTHETICAL 39.1 KD PROTEIN IN KAPD-PBPD INTERGENIC REGION (ORF1)
>gi|1934783|emb|CAB07914| (Z93933) unknown [Bacillus
subtilis] >gi|2635644|emb|CAB15137| (Z99120) alternate
gene name: yugC; similar to multidrug-efflux transporter
[Bacillus subtilis]
Length = 356
Score = 80.0 bits (194), Expect = 3e-14
Identities = 87/356 (24%), Positives = 153/356 (42%), Gaps = 27/356 (7%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
Y L F +P G D+ G K IL+ + G AL G S++ LF R+ GL G
Sbjct: 9 YILMAFLVSPFWGRFGDKRGYKKILMATGTGIALSIFFMGFVTSVYQLFFLRMAMGLVTG 68
Query: 113 NIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFYFGALIS 171
I T A + T + + K G G++ GP +GG+LA FG + F+ + +
Sbjct: 69 FIPTSLAMISAQTPKSSAGKTLGTLQMGQVSGSLFGPLLGGMLADRFGFTYTFFITSFVI 128
Query: 172 IANLLYGAFVMNES--LPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPN 229
+++L F + E +T + ++S K++ L + L ++ +L+ N
Sbjct: 129 FSSVLLVLFGVKEKHLAEKTAKRTSYSRKEV-----LSYIFHHPALWVMMLLTMLIQTGN 183
Query: 230 GALQAIISQF--SLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLAL 287
++Q +++ + L G+A S GL +L + + L + R+ +
Sbjct: 184 FSIQPLLALYVNELHGPVNLAFFSGMAFSATGLGSLL----LARKWGDLGDRYGHRRILI 239
Query: 288 VCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG--TAFNGKLSKSATSSEQGKLQG 345
+ A F A + +L +F F FG ++ G + A S QG++ G
Sbjct: 240 GLLLAASFFFIPQALAS--SLSVLLVFRFLFGMAMGGLLPCITAAIRVQAPGSIQGEVLG 297
Query: 346 GSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI--FLIIA----LLVLSKTKSD 395
+ + + L V+GPL+GG I HF + ++ FL A L ++ K + D
Sbjct: 298 YNVSFRFLGNVLGPLLGG---IISSHFTISATFYVTAFLFFAGACMLWIMQKLRKD 350
dbj|BAA75244.1| (AB023657) tetracycline-resistance protein [Escherichia coli]
Length = 93
Score = 78.4 bits (190), Expect = 1e-13
Identities = 39/87 (44%), Positives = 52/87 (58%)
Query: 99 MLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF 158
+L+ GRI+ G+TG AY ADITD E+R + FG +A GVG ++GP GGLL
Sbjct: 1 ILYAGRIVAGITGATGAVAGAYIADITDGEDRARHFGLMSACFGVGMVAGPVAGGLLGAI 60
Query: 159 GNSVPFYFGALISIANLLYGAFVMNES 185
PF A+++ NLL G F+M ES
Sbjct: 61 SLHAPFLAAAVLNGLNLLLGCFLMQES 87
gb|AAF09843.1|AE001887_3 (AE001887) multidrug-efflux transporter, putative [Deinococcus
radiodurans]
Length = 544
Score = 78.0 bits (189), Expect = 1e-13
Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 6/151 (3%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGY 88
+P +++ H A T+ Y+L T P +G+LSDR+GR+P++L+ + ALG
Sbjct: 45 MPRVISDLGGFHLYAWAFTA----YSLTTTVTIPIVGTLSDRYGRRPLILLGIVVFALGS 100
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTIS 147
+ G S+ L R I G+ GG ++ + F AD+ R + G+T A G+ ++
Sbjct: 101 MGLGFVQSMEQLIALRAIQGIGGGTLMAMSFTAIADLFTPIERGRYQGYTGAVWGISSVV 160
Query: 148 GPTVGGLLA-HFGNSVPFYFGALISIANLLY 177
GP VGG L HFG F+ ++ L +
Sbjct: 161 GPLVGGFLTDHFGWRSVFFLNLPFALLALFF 191
gi|3617954 (AF079900) tetracycline efflux protein [Streptomyces rimosus]
Length = 563
Score = 77.6 bits (188), Expect = 2e-13
Identities = 49/145 (33%), Positives = 72/145 (48%), Gaps = 17/145 (11%)
Query: 32 MVAPFANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDRFGRKP 75
++A F A DQ +I T++ I Y + + A P G LSD +GRKP
Sbjct: 32 LLAVFLAALDQTVIATAMRTIADDLHGQTEQAWATTGYLIASVLAMPFYGKLSDIYGRKP 91
Query: 76 ILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVF 134
+ LIS+ G ++ G AGS+W L L R + GL GG +++L A AD+ R + F
Sbjct: 92 MYLISIVVFIGGSVLCGTAGSMWELALFRAVQGLGGGGLMSLPTAVVADLAPVRERGRYF 151
Query: 135 GWTAAAVGVGTISGPTVGGLLAHFG 159
+ A V +++GP GG A G
Sbjct: 152 AFLQMAWVVASVAGPLAGGFFAEAG 176
gi|3108177 (AF061335) oxytetracycline exporter [Streptomyces rimosus]
Length = 536
Score = 77.6 bits (188), Expect = 2e-13
Identities = 49/145 (33%), Positives = 72/145 (48%), Gaps = 17/145 (11%)
Query: 32 MVAPFANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDRFGRKP 75
++A F A DQ +I T++ I Y + + A P G LSD +GRKP
Sbjct: 5 LLAVFLAALDQTVIATAMRTIADDLHGQTEQAWATTGYLIASVLAMPFYGKLSDIYGRKP 64
Query: 76 ILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVF 134
+ LIS+ G ++ G AGS+W L L R + GL GG +++L A AD+ R + F
Sbjct: 65 MYLISIVVFIGGSVLCGTAGSMWELALFRAVQGLGGGGLMSLPTAVVADLAPVRERGRYF 124
Query: 135 GWTAAAVGVGTISGPTVGGLLAHFG 159
+ A V +++GP GG A G
Sbjct: 125 AFLQMAWVVASVAGPLAGGFFAEAG 149
gi|2983666 (AE000729) transporter (major facilitator family) [Aquifex
aeolicus]
Length = 392
Score = 77.6 bits (188), Expect = 2e-13
Identities = 88/364 (24%), Positives = 156/364 (42%), Gaps = 25/364 (6%)
Query: 32 MVAPFA-NAHDQALIVTSL-MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYL 89
++AP+ N ++T L + IY L G LSD++ RK ++ L ALG
Sbjct: 30 VLAPYVKNLPGSTPLLTGLAVGIYGLTQALLQIPFGYLSDKYSRKGVISFGLLVYALGSF 89
Query: 90 IFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGV----GT 145
+ G+A ++WM+ R + G G A AD+ EE RT F AA+G+
Sbjct: 90 LGGIAQNIWMMLFARFLQG-AGAISSAAIALAADLIREEVRTVTFAHIGAAIGMSFAFSI 148
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
++ P + G HFG F+ +S+ LLY + E P+ H K++ PF +
Sbjct: 149 VAAPFLAG---HFGVPFIFFLTGGLSLLALLYLWIFIKE--PQRHE------KEIEPFLK 197
Query: 206 LF-QLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAW-TPVLIGLAISIMGLMDI 263
L Q+LR KN + + +L L ++ +I ++ F + P + + ++ I
Sbjct: 198 LLPQILRDKNQMAVDLSIGILHLFLVSIFTVIPVELIERFNFPKPEHWKIYLPVI----I 253
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
++ ++P ++ + K+ + L L FA + + +L + F G +
Sbjct: 254 ISLAIMVPAIIAAERKGKMKPVFLAGIAFVALGFASHLILQDFWGAVLLLLFFFIGFHLM 313
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
L+K A +G G +Q IG +GG +++ LG L + +
Sbjct: 314 EPILPSMLTKFAGPERRGIAVGVYNTVQFSGAFIGGFLGG-LFLKLGAVYMLLTNLLLSL 372
Query: 384 IALL 387
+ LL
Sbjct: 373 VWLL 376
sp|P39637|YWFA_BACSU HYPOTHETICAL 44.5 KD PROTEIN IN ROCC-PTA INTERGENIC REGION
>gi|629086|pir||S39734 hypothetical protein - Bacillus
subtilis >gi|414003|emb|CAA51635| (X73124) ipa-79d
[Bacillus subtilis] >gi|2636311|emb|CAB15802| (Z99123)
alternate gene name: ipa-79d; similar to chloramphenicol
resistance [Bacillus subtilis]
Length = 412
Score = 75.7 bits (183), Expect = 7e-13
Identities = 94/389 (24%), Positives = 168/389 (43%), Gaps = 36/389 (9%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
SP++P + F++ D +++ S+ +IY + F AP L L D++ R+ LL L
Sbjct: 38 SPLLPDLAKAFSS--DVSVLALSI-SIYGVMIFIGAPLLVPLGDKYSRELSLLAGLMIFI 94
Query: 86 LGYLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFG-----WTAA 139
+G +I LA +++ FLGR + GL G V T +A D R KV G W+ A
Sbjct: 95 IGTVICALAQNIFFFFLGRALSGLAAGAFVPTAYAVVGDRVPYTYRGKVMGLIVSSWSLA 154
Query: 140 AVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ 199
+ G G +GG+L H+ F+ AL+ + +L M + + +
Sbjct: 155 LI-FGVPLGSFIGGVL-HW--RWTFWIFALMGVLVVLLILLEMRRHAQHKNSGKEEIEEP 210
Query: 200 LNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMG 259
F ++ R+ + F ++ + + + + + D F GL I I G
Sbjct: 211 AGTFRDALKVPRVPVYITITFCNMIGFY---GMYSFLGTYLQDVFTGGNTAAGLFIMIYG 267
Query: 260 L---MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIF 316
+ M ++T I R+ K+ LI L ++ ++A L +A ++ I ++FI+
Sbjct: 268 IGFSMSVITG-KIADRIGKM--RSLLIALGVISVLLACLPYAPASMF----LLIASLFIW 320
Query: 317 AFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPAL 376
S+ T + LS + +GK+ L +G + G +Y++ G+ A L
Sbjct: 321 GLMQSLTVTLLSTILS-DCSERHRGKVMVFYSLASNLAVTLGSALMGPVYVAYGYAAVGL 379
Query: 377 -------MGFIFLIIALLVLSK--TKSDQ 396
+GF+ + A K K+DQ
Sbjct: 380 ICAAITVLGFVLSVFAYKKYGKLEQKADQ 408
dbj|BAA88541.1| (AP000969) ESTs C97915(C0113), C26087(C11614) correspond to a
region of the predicted gene.; hypothetical protein
[Oryza sativa]
Length = 398
Score = 72.6 bits (175), Expect = 6e-12
Identities = 84/348 (24%), Positives = 140/348 (40%), Gaps = 57/348 (16%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADI 124
G ++D++GRKPI++I+L + +FGL+ S WM R + GL G + + AY ++
Sbjct: 12 GIVADKYGRKPIIIITLISIIIFNTLFGLSSSYWMALTSRGLLGLMCGILGPIKAYATEV 71
Query: 125 TDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPF------------YFGALISI 172
+E+ +++ G+G I GP +GG LA + P YF + I
Sbjct: 72 CRKEHGHLGLSLVSSSRGIGLIVGPAIGGYLAQPADKYPSIFSEKSIFGRFPYFLPCLCI 131
Query: 173 ANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLL--------FAGIL 224
+ L A + + LPET L+ TQ L ++ L AG L
Sbjct: 132 SLLAIVALLASFWLPET----------LHKHTQDMVLEDSISVEEGLSGPTAEENSAGCL 181
Query: 225 LWLPNGALQAIISQ---FSLDSFAWTPVL-------------------IGLAISIMGLMD 262
N L + I FSL A+ V +G ++ GL
Sbjct: 182 NLFTNWPLMSAIIAYCIFSLQDVAYAEVFSLWAVSDRKYGGLSFSSQDVGSVLAFSGLFL 241
Query: 263 ILTQIFIMPRLLKLANEDKLIRLALVCEI---IAYLLFALSAFSKMWPFFILAMFI-FAF 318
++ QI + P + K L+R+ + I +Y A + S + A F+ AF
Sbjct: 242 LVFQILVYPSVAKSVEPITLVRIVAILTIPLLSSYPFMAGLSGSILQLIVNCASFLKNAF 301
Query: 319 GDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIY 366
+ T FN ++ + + G + L ++ + I P I G I+
Sbjct: 302 AVTTI-TVFNILMNDAVAQDVRASANGVAVTLMSIFKAIAPAIAGAIF 348
emb|CAA04933| (AJ001694) putative membrane protein [Thermotoga maritima]
>gi|4981562|gb|AAD36098.1|AE001764_1 (AE001764)
permease, putative [Thermotoga maritima]
Length = 422
Score = 72.6 bits (175), Expect = 6e-12
Identities = 84/360 (23%), Positives = 148/360 (40%), Gaps = 20/360 (5%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
L+ +S I AL + G L+DR+ RK +L+ S+ + L+ + S LF
Sbjct: 40 LVASSFTVIGALVSL----VWGYLADRYSRKNLLIYSILVGEIPCLMSAFSRSYGELFFW 95
Query: 104 RIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFGNS 161
R + G+ G + +++ D+ DE R KV ++A+ +G++ G VGG L +G
Sbjct: 96 RALTGIGVGASFPIVYSMIGDMFDEVKRGKVVALISSAISIGSVLGMIVGGFLGPKYGWR 155
Query: 162 VPFYFGALISIANLLYGAFVMNESLPETHRT-------RNFSLKQLNPFTQLFQLLRMKN 214
VPF ++ +I + FV+ E + + + +L+++K
Sbjct: 156 VPFIAVSVPNIFFAVLSIFVLKEPKRGAFEKGIGELVQSGYEYPKAPKLSDYAKLVKVKT 215
Query: 215 LNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLL 274
L F GI +P GA+ + +F + L + GL +I+ I
Sbjct: 216 NLLLFFQGIAGTIPWGAIPYFLVEFFRRERGLSVETATLVFLVFGLGNIVGIILGGLWGA 275
Query: 275 KLANEDKLIRLALVCEIIAYL--LFALSAFSKMWPFFILAM--FIFAFGDSIFGTAFNGK 330
+ + + L L C I L F + M +L + FI +F S+ G
Sbjct: 276 SIYAKSRPF-LPLFCSITTALGTFFTVMTLDYMGSLLVLMLLGFIASFTASLTGPNVKFM 334
Query: 331 LSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPAL--MGFIFLIIALLV 388
L E+G++ +L G GG + ++LG AL + +LI A+L+
Sbjct: 335 LLNVNEPQERGRIFSIFNLTDSLGTGFGKFAGGVMSVALGSLGAALKVSAYFWLICAVLL 394
gi|4155704 (AE001538) putative transporter [Helicobacter pylori J99]
Length = 443
Score = 72.2 bits (174), Expect = 8e-12
Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 21/350 (6%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+ + F ++ L+ ++ Y F P +G LSD+ GRK ++++ L +
Sbjct: 24 PVISWYADSF-HSSSPLLVGLAVGGAYLTQIIFQTP-MGILSDKIGRKVVVMVCLLLFLI 81
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTG-GNIVTLFAYFADITDEENRTKVFGWTAAAVGVG- 144
G L+ +A + L +GR I G+ G +V+ A AD EE RTK A + +
Sbjct: 82 GSLVCFVANDIITLVIGRFIQGMGALGGVVS--AMVADEVKEEERTKAMAIMGAFIFISF 139
Query: 145 TISGPTVGGLLAHFGNSV-PFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPF 203
TIS G++A G + F A++++ +LL + ++ +++ +N +K P
Sbjct: 140 TISMAIGPGVVAFLGGAKWLFLLTAILTLLSLLM-LLKVKDAPKISYQIKN--IKAYQPN 196
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLD-SFAWTPVLIG--LAISIMGL 260
++ LL + + +F ++ L A++++F D SF + G L + MG+
Sbjct: 197 SKALYLLYLSSFFEKMFMTLIFVL---IPLALVNEFHKDESFLILVYVPGALLGVLSMGI 253
Query: 261 MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGD 320
++ + + P+ + L+ + L +V + +L + +W FI+ + F G
Sbjct: 254 ASVMAEKYNKPKGVMLSG----VLLFIVSYLCLFLADSSFLGKYLW-LFIVGVAFFFIGF 308
Query: 321 SIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG 370
+ SK A E+GK+ G L +G + GG Y LG
Sbjct: 309 ATLEPIMQSLASKFAKVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLG 358
emb|CAB02189| (Z80108) hypothetical protein Rv1410c [Mycobacterium tuberculosis]
Length = 518
Score = 71.8 bits (173), Expect = 1e-11
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 46 VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLA---GSLWMLFL 102
+T ++ +Y L A P LG SDRFGRK +L +SLAG +G ++ LA G ML
Sbjct: 47 ITWIVTMYLLGYIAAMPLLGRASDRFGRKLMLQVSLAGFIIGSVVTALAGHFGDFHMLIA 106
Query: 103 GRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVG 152
GR I G+ G ++ + A AD+ + NR V G AA +G++ GP G
Sbjct: 107 GRTIQGVASGALLPITLALGADLWSQRNRAGVLGGIGAAQELGSVLGPLYG 157
gi|4240426 (AF080235) LanJ [Streptomyces cyanogenus]
Length = 517
Score = 70.6 bits (170), Expect = 2e-11
Identities = 87/350 (24%), Positives = 143/350 (40%), Gaps = 67/350 (19%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL-TG 111
Y L T P G L D +GRK + L S+A G ++ GLA S+ L R++ GL +G
Sbjct: 65 YMLATAATTPIWGKLGDMYGRKGVFLTSIALFLAGSVVAGLAQSMGQLIGCRVLQGLGSG 124
Query: 112 GNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFG------NSVPF 164
G +V + ++ R K ++A +GV + GP GG L H G +VPF
Sbjct: 125 GLMVGALSLIGELVTPRERGKFQAMSSAVMGVAMVGGPLAGGFLTDHLGWRYCFYVNVPF 184
Query: 165 YFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
A ++IA L LP+ L L A ++
Sbjct: 185 GLAAFVTIAVAL--------KLPKRRSQAPIDY-----------------LGAALLAAVI 219
Query: 225 LWLPNGALQAIISQFSLDSFAW-TPVLIGL-AISIMGLMDILTQIFIMPRLLKLANEDKL 282
L +++ + + W +PV+IGL AI++ G F +P + + A
Sbjct: 220 TSL------VLVTTWGGRQYDWSSPVIIGLIAIAVAG-------AFTLPAVERRA----- 261
Query: 283 IRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGK 342
V ++ +F + FS W + +F F ++ + + A++S G
Sbjct: 262 -----VAPVLPLTVFRSANFS--WANVVSFLFGFVMVAAMTFLPIYQQTVQGASASSAGL 314
Query: 343 LQGGSQALQALTRVIGP-LIGGQIYISLGHF-APALMGFIFLIIALLVLS 390
L L L ++G GGQ+ G+F A+ G + L+ +L+LS
Sbjct: 315 LM-----LPLLLGMVGTNAFGGQLMSKQGNFKLYAIAGGVLLLAGILLLS 359
dbj|BAA08793.1| (D50098) multidrug transporter [Bacillus subtilis]
Length = 512
Score = 70.2 bits (169), Expect = 3e-11
Identities = 88/365 (24%), Positives = 142/365 (38%), Gaps = 84/365 (23%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT 110
A Y + P G LSD +GRK L L +G + G+A ++ L + R I G+
Sbjct: 54 ASYMVAVMAGMPIYGKLSDMYGRKRFFLFGLIFFLIGSALCGIAQTMNQLIIFRAIQGIG 113
Query: 111 GGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP----FY 165
GG ++ + F D+ E R K+ G A G+ ++ GP +G ++ +S+ FY
Sbjct: 114 GGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT---DSISWHWVFY 170
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILL 225
I +L + ESL HR +
Sbjct: 171 INVPIGALSLFFIIRYYKESL--EHRKQKID----------------------------- 199
Query: 226 WLPNGALQAIIS----QFSLD----SFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLA 277
W GA+ ++S F+L+ ++ W +I I+GL + FI +++
Sbjct: 200 W--GGAITLVVSIVCLMFALELGGKTYDWN------SIQIIGLFIVFAVFFIAFFIVERK 251
Query: 278 NEDKLI-------RLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGK 330
E+ +I RL +I+A+L F ILA+FI F +++G+
Sbjct: 252 AEEPIISFWMFKNRLFATAQILAFLYGG--------TFIILAVFIPIFVQAVYGS----- 298
Query: 331 LSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLS 390
SATS+ G + VIG +IGG L+ I I +L+LS
Sbjct: 299 ---SATSA------GFILTPMMIGSVIGSMIGGIFQTKASFRNLMLISVIAFFIGMLLLS 349
Query: 391 KTKSD 395
D
Sbjct: 350 NMTPD 354
gb|AAD08227.1| (AE000624) multidrug-efflux transporter [Helicobacter pylori 26695]
Length = 443
Score = 69.1 bits (166), Expect = 7e-11
Identities = 83/350 (23%), Positives = 154/350 (43%), Gaps = 21/350 (6%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+ F ++ L+ ++ Y F P +G LSD+ GRK ++++ L
Sbjct: 24 PVISLYADSF-HSSSPLLVGLAVGGAYLTQIVFQTP-MGILSDKIGRKVVVMVCLLLFLA 81
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTG-GNIVTLFAYFADITDEENRTKVFGWTAAAVGVG- 144
G L+ +A + L +GR I G+ G +++ A AD EE RTK A + +
Sbjct: 82 GSLVCFIANDIVWLVIGRFIQGMGALGGVIS--AMVADEVKEEERTKAMAIMGAFIFISF 139
Query: 145 TISGPTVGGLLAHFGNSV-PFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPF 203
TIS G++A G + F A++++ +LL + ++ +++ +N +K P
Sbjct: 140 TISMAIGPGVVAFLGGAKWLFLLTAILTLLSLLM-LLKVKDAPKISYQIKN--IKAYQPN 196
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLD-SFAWTPVLIG--LAISIMGL 260
++ LL + + F ++ L A++++F D SF + G L + MG+
Sbjct: 197 SKALYLLYLSSFFEKAFMTLIFVL---IPLALVNEFHKDESFLILVYVPGALLGVLSMGI 253
Query: 261 MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGD 320
++ + + P+ + L+ + L +V + +L + +W FI+ + F G
Sbjct: 254 ASVMAEKYNKPKGVMLSG----VLLFIVSYLCLFLADSSFLGKYLW-LFIVGVAFFFIGF 308
Query: 321 SIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG 370
+ SK A E+GK+ G L +G + GG Y LG
Sbjct: 309 ATLEPIMQSLASKFAKVHEKGKVLGQFTTFGYLGSFVGGVSGGLSYHHLG 358
emb|CAB50282.1| (AJ248287) multidrug resistance protein [Pyrococcus abyssi]
Length = 410
Score = 68.3 bits (164), Expect = 1e-10
Identities = 85/357 (23%), Positives = 155/357 (42%), Gaps = 22/357 (6%)
Query: 45 IVTSLMAIYALCTFFAAPALGSLSDRFG-RKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
+V L +Y L + G LSD+ G RKP +++ + S Y + L S +L
Sbjct: 62 LVGLLSVVYNLTSTIFQYPFGYLSDKTGKRKPFIILGILASGTTYGLVALITSPILLLGL 121
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRT-KVFGWTAAAVGVGTISGPTVGGLLAH-FGNS 161
R G G ++ A+ A I++ R +FG+ +G ++G GG + G
Sbjct: 122 RAFQGALGASLAP--AHSALISELSPRIGSMFGFFGFVENLGFMAGNFAGGYIVKTLGMK 179
Query: 162 VPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQL------FQLLRMKNL 215
+ F +L+S+ +L+ + + R +K+ ++ F+ L L
Sbjct: 180 MMFIITSLVSLIGILFLLKIKERGRAKAGGDRLIIVKEGRESDRVELKEIAFKKLMKGRL 239
Query: 216 NRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLK 275
A +L + +GA+ A +S + + F +G I L L+ + I+ RL+
Sbjct: 240 GIFYVAVLLAMIASGAVYATVSVYFEEKFG--EEFVGYLFGIDSLSAALSAL-IIGRLID 296
Query: 276 LANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGD--SIFGTAFNGKLSK 333
E RL+LV II ++ +AL+ I+A+ G ++ + + +++
Sbjct: 297 KYGEKLFFRLSLVGYIITFMGYALAN-----SVIIMALISILSGLKWTMLTNSSSTYVAR 351
Query: 334 SATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLS 390
+SE+G+ G + L VIGPLIGG + + G FA L + ++ +LS
Sbjct: 352 RVPTSERGQGMGLLNTMMTLGWVIGPLIGGILADNFG-FAVMLYSTVPILFLGFLLS 407
gi|2621135 (AE000800) multidrug transporter homolog [Methanobacterium
thermoautotrophicum]
Length = 459
Score = 67.5 bits (162), Expect = 2e-10
Identities = 94/394 (23%), Positives = 150/394 (37%), Gaps = 63/394 (15%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
Y L P + LSDR+GR+ I ++ + ALG +I ++ S +L LGR I G G
Sbjct: 53 YILFFMVGTPLMAKLSDRYGRRDIYILDIILFALGSVITAISPSYPLLILGRSIQGFGAG 112
Query: 113 NIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALIS 171
I + A+ D E+R K G + G +I+GP + G + +G F I+
Sbjct: 113 GIFPVASAFIGDTFPPESRGKALGIIGSVFGFSSIAGPILAGFILPYGWQWLFLINIPIA 172
Query: 172 IANLLYGAFVMNESLPETHRTRN-------------------FSLKQLNPFTQLFQLLRM 212
A ++ G F++ LP T +T + + Q++ L+R
Sbjct: 173 -ATIVVGGFLI---LPVTGKTDDGEFDARGTLLLAIIVASLAVGINQIDTTDLTGSLMRP 228
Query: 213 KNLNRLLFAGIL---LWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFI 269
+ L+ A L LW A + Q +D A V I AIS + +FI
Sbjct: 229 IVVVPLILAAALTPILWRVERAAPDPVVQ--VDLLASREVRIATAISAGNGLSQAAIVFI 286
Query: 270 MP-RLLKLANEDKL---------IRLALVCEIIAYLL--------------------FAL 299
LL L+ + + +AL I+ LL +
Sbjct: 287 PSYALLALSLSESMASFSLLPFVTTMALSAPIVGVLLDRVGSRVVMISGSLILMVGCTIM 346
Query: 300 SAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGP 359
+ S P FILA + A G T L S + + QAL + G
Sbjct: 347 ALLSSTTPLFILAEVLMALG---LITVIGAPLRYIMLSETPPEHRASGQALINILSSAGQ 403
Query: 360 LIGGQIYISL-GHFAPALMGFIFLIIALLVLSKT 392
L+GG + + +MG+ F + L+ ++ T
Sbjct: 404 LVGGALIGGIVASMGSGVMGYRFSFLFLVAVAFT 437
emb|CAB10049| (Z97193) hypothetical protein Rv1877 [Mycobacterium tuberculosis]
Length = 687
Score = 67.5 bits (162), Expect = 2e-10
Identities = 49/155 (31%), Positives = 76/155 (48%), Gaps = 6/155 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P +P +VA + DQ+ VTS Y L G L D GR +LL S+ +
Sbjct: 49 PALPTIVAELGSTVDQSWAVTS----YLLGGTVVVVVAGKLGDLLGRNRVLLGSVVVFVV 104
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNI-VTLFAYFADITDEENRTKVFGWTAAAVGVGT 145
G ++ GL+ ++ ML + R + G+ G I VT +A A++ +R + G A GV T
Sbjct: 105 GSVLCGLSQTMTMLAISRALQGVGAGAISVTAYALAAEVVPLRDRGRYQGVLGAVFGVNT 164
Query: 146 ISGPTVGGLLAHFGN-SVPFYFGALISIANLLYGA 179
++GP +GG L + + F+ +SIA L A
Sbjct: 165 VTGPLLGGWLTDYLSWRWAFWINVPVSIAVLTVAA 199
sp|P31126|YDEE_ECOLI HYPOTHETICAL 42.7 KD PROTEIN IN MARB-DCP INTERGENIC REGION
>gi|1787815 (AE000251) putative transport protein
[Escherichia coli]
Length = 395
Score = 67.5 bits (162), Expect = 2e-10
Identities = 82/370 (22%), Positives = 158/370 (42%), Gaps = 29/370 (7%)
Query: 29 VPFMVAPFANAHDQAL-IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
+PFM + + ++ ++ M I + G L+D+F +K +L+++ A G
Sbjct: 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASG 86
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGTI 146
++ L ++ ++ L + T+ A+FAD ++TK+F + +G
Sbjct: 87 FIAITLVNNVTLVVLFFALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWT 146
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVM--NESLPETHRTRNFSLKQLNPFT 204
GP +G LL ++PF+ A+ S +L+ + +E + T +S K
Sbjct: 147 IGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPK------ 200
Query: 205 QLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSL----DSFAWTPVLIGLAISIMGL 260
LL+ K L +G L +GA + ISQ+ + FA V + L ++
Sbjct: 201 ---VLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVN---A 254
Query: 261 MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGD 320
++T + + R L AN L+ +C +I + F S S + + ++ +F G+
Sbjct: 255 AMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNSLL--LWGMSAAVFTVGE 312
Query: 321 SIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI 380
I+ L E +Q+L L I PL+ G + SL + +
Sbjct: 313 IIYAPG-EYMLIDHIAPPEMKASYFSAQSLGWLGAAINPLVSGVVLTSLPPSS------L 365
Query: 381 FLIIALLVLS 390
F+I+AL++++
Sbjct: 366 FVILALVIIA 375
gb|AAF00219.1|AF164961_8 (AF164961) transporter [Streptomyces fradiae]
Length = 525
Score = 67.1 bits (161), Expect = 3e-10
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
++ YAL T A P G L D +GRK + L ++ LG + G + ++ L R + G
Sbjct: 61 VVTAYALATAAATPIWGKLGDMYGRKVVFLAAIGVFLLGSALAGASQTMEQLIAFRAVQG 120
Query: 109 L-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFY 165
L GG +V FA DI R K G +A +G+ ++GP GGL+ H G FY
Sbjct: 121 LGAGGLMVGAFAIIGDIVPGRERGKYQGMMSAVMGLAMVAGPLAGGLITDHLGWRWCFY 179
pir||S44207 hypothetical protein 337 - Coxiella burnetii
Length = 338
Score = 67.1 bits (161), Expect = 3e-10
Identities = 66/292 (22%), Positives = 121/292 (40%), Gaps = 9/292 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P +P + F H ++ + ++ + F+ GSLSD +GRKP+LLI L +
Sbjct: 26 PALPALTTYF---HTFPGVIQLSLTLFLIAFGFSQLFYGSLSDCYGRKPLLLIGLVIVMI 82
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGT 145
G+LI A L +L + R++ GL G++ L A D + E + A +
Sbjct: 83 GFLIAVFARHLSLLLIARVVQGLGAGSVSVLARAVIRDRFEGEKLVQALSLLIMAASLAP 142
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
+ P +GG + H + +L G F + LPET +T + K +
Sbjct: 143 MIAPFIGGHIQHRLGWHSIFIFLFFYSGLILLGIFFL---LPETKKTESVPFK-MGALLN 198
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
++LL + I++ L IS F + I + +
Sbjct: 199 NYKLLLRHPIYIKYVVCIIMAYACQILYLSISPFIFQNGLKLNAAQYSTIITLPAIGYFV 258
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFAL-SAFSKMWPFFILAMFIF 316
F+ RL++ + + L+ + + ++A + AL +AF+ + F ++ IF
Sbjct: 259 GNFLSTRLIRFFDSNHLVFVGALIVVMAGIALALEAAFNGLSAFSVITPIIF 310
emb|CAA55564| (X78969) orf 337; translated orf similarity to SW: BCR_ECOLI
bicyclomycin resistance protein of Escherichia coli
[Coxiella burnetii]
Length = 339
Score = 67.1 bits (161), Expect = 3e-10
Identities = 66/292 (22%), Positives = 121/292 (40%), Gaps = 9/292 (3%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P +P + F H ++ + ++ + F+ GSLSD +GRKP+LLI L +
Sbjct: 26 PALPALTTYF---HTFPGVIQLSLTLFLIAFGFSQLFYGSLSDCYGRKPLLLIGLVIVMI 82
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGT 145
G+LI A L +L + R++ GL G++ L A D + E + A +
Sbjct: 83 GFLIAVFARHLSLLLIARVVQGLGAGSVSVLARAVIRDRFEGEKLVQALSLLIMAASLAP 142
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
+ P +GG + H + +L G F + LPET +T + K +
Sbjct: 143 MIAPFIGGHIQHRLGWHSIFIFLFFYSGLILLGIFFL---LPETKKTESVPFK-MGALLN 198
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
++LL + I++ L IS F + I + +
Sbjct: 199 NYKLLLRHPIYIKYVVCIIMAYACQILYLSISPFIFQNGLKLNAAQYSTIITLPAIGYFV 258
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFAL-SAFSKMWPFFILAMFIF 316
F+ RL++ + + L+ + + ++A + AL +AF+ + F ++ IF
Sbjct: 259 GNFLSTRLIRFFDSNHLVFVGALIVVMAGIALALEAAFNGLSAFSVITPIIF 310
emb|CAB12669| (Z99108) similar to multidrug-efflux transporter [Bacillus
subtilis] >gi|2804525|dbj|BAA24461| (D85082) YfiU
[Bacillus subtilis]
Length = 518
Score = 66.7 bits (160), Expect = 3e-10
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 50 MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL 109
+ +Y L + P +G LSDR+GRK + LI + LG L+ L+ S + + R+I L
Sbjct: 54 ITLYTLGLSVSVPIVGKLSDRYGRKKLFLIEVCLFGLGSLLVALSQSFPLFLISRLIQAL 113
Query: 110 TGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGA 168
GG I + ++ +E + K G A G+ + GP +G L + S + F
Sbjct: 114 GGGGIFIIGSSHILATLPKEKQGKALGLLGAMNGMAAVLGPNIGSFLLDWTGSWHWLFLI 173
Query: 169 LISIANLL--YGA-FVMNESLPETHR 191
+ IA LL +GA F+ PE R
Sbjct: 174 NLPIAVLLVVFGACFIAETKAPEAKR 199
sp|P45123|BCR_HAEIN BICYCLOMYCIN RESISTANCE PROTEIN HOMOLOG >gi|1073902|pir||E64112
bicyclomycin resistance protein (bcr) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574174
(U32804) bicyclomycin resistance protein (bcr)
[Haemophilus influenzae Rd]
Length = 398
Score = 66.7 bits (160), Expect = 3e-10
Identities = 81/336 (24%), Positives = 140/336 (41%), Gaps = 28/336 (8%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFAD 123
G D FGRKPI+L+ + AL L+ S+ R + G G V L A D
Sbjct: 65 GPFGDSFGRKPIILLGVIVGALTALVLTEINSVGNFTALRFVQGFFGAAPVVLSGALLRD 124
Query: 124 ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMN 183
+ ++ +KV + + P +GG + F + ++ +IS+ LL A V
Sbjct: 125 LFSKDQLSKVMSTITLVFMLAPLVAPIIGGYIVKFFHWHAIFY--VISLVGLLAAALVF- 181
Query: 184 ESLPETHRTRNFSLKQLNPFTQLFQLL-RMKNLNRLLFAGILLWLPNGALQAIISQFSLD 242
+PETH+ N +LN + F LL + K + +FA + G L A ++ S+
Sbjct: 182 FIIPETHKKENRIPLRLNIIARNFLLLWKQKEVLGYMFAASFSF---GGLFAFVTAGSIV 238
Query: 243 SFAWTPVLIGLAISIMG---LMDILTQI---FIMPRLLKLANEDKLIRLALVCEIIAYLL 296
+ G+ + G +M+I+T I F+ R + + ++R+AL + ++ +
Sbjct: 239 YIG----IYGVPVDQFGYFFMMNIVTMIFASFLNSRFVTKVGAETMLRIALAIQFLSGMW 294
Query: 297 FALSAFSKM--WPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALT 354
L+A + WP I F I A L + ++ G + +L
Sbjct: 295 LILTALLDLGFWPMAIGVAFFVGPNPVISSNAMASALERCP------QMAGTANSLIGSV 348
Query: 355 RVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLS 390
R I G + S+ A M +F + A +V+S
Sbjct: 349 RFAVGAIMGSLVASMKMDTAAPM--LFTMGACVVIS 382
emb|CAB61602.1| (AL133210) putative export protein [Streptomyces coelicolor A3(2)]
Length = 533
Score = 66.0 bits (158), Expect = 6e-10
Identities = 91/364 (25%), Positives = 138/364 (37%), Gaps = 74/364 (20%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFAD 123
G L DRFGR+ L+ +AG L + GLAGS+ + R + G GG ++
Sbjct: 88 GKLGDRFGRRTYYLVGVAGFTLASIAIGLAGSIEGVVAFRALQGAFGGLLMPNTLGLLRS 147
Query: 124 ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVM 182
+ + G A V T GP VGGLL H FY A I +A + +GA V+
Sbjct: 148 VFPPKKFGMAVGIWAMVSAVATALGPIVGGLLVEHVDWESVFYVNAPIGVAAIAFGALVL 207
Query: 183 NESLPETHRTR----NFSLKQLNPFTQLFQLLRMKNLN-------RLLFAGILLWLPNGA 231
+S R R L L +F +++ + + AG+LL L G
Sbjct: 208 PQSRNAAGRERFDIPGLVLLALGLLAVVFGVVKGETWGWTSAGTLGAVAAGLLLLLVFGR 267
Query: 232 LQAIISQ--FSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANED--------- 280
+ + + F + IG ++ + +L IF + +L L N
Sbjct: 268 YETRVEHPLLPMRLFRSRALTIGAIVTALNFFVMLGVIFFV--MLYLQNVRGFTPVEAGV 325
Query: 281 KLIRLALVCEIIAYLLFAL------------------------------SAFSKMWPFFI 310
+ + L+L + + L AL SA++ MWP FI
Sbjct: 326 RTLPLSLASLVASPLGAALTQRFGPRLTMPLGMLLQAASCFGMLTWQTDSAYATMWPPFI 385
Query: 311 -----LAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQI 365
+ M + A D+I G A G + GG LQA T IG +G +
Sbjct: 386 ALGLGVGMVMAASSDAIVGNA----------PVRDGGVAGG---LQATTLQIGGALGTSV 432
Query: 366 YISL 369
+SL
Sbjct: 433 LVSL 436
gi|1813491 (U64313) MsyB [Bacillus firmus]
Length = 307
Score = 65.6 bits (157), Expect = 7e-10
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 18/251 (7%)
Query: 32 MVAPFANAHDQALIVTS--LMAIYA--------LCTFFAAPALGSLSDRFGRKPILLISL 81
M+ PF + + L VT+ ++++A L F +P G ++DR GRK ++L S
Sbjct: 34 MIIPFLPLYLKELGVTNPQTLSLWAGIIFGANFLTAFLFSPFWGRMADRHGRKMMILRSG 93
Query: 82 AGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAV 141
G AL + G A L + R+++G+ G I + T +E G +
Sbjct: 94 FGMALVISLTGFATGPVSLLILRLLNGVISGFIPASIGLVSTNTPKEKVGYALGVLQSGT 153
Query: 142 GVGTISGPTVGGLLAH-FGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQL 200
G I GP +GG++A F + F+ L + L F + ES + + S K+
Sbjct: 154 VAGAICGPLIGGVMAQAFSYQMVFFLTGLCILVAALGVLFFVRESFTPVSKEQKTSTKE- 212
Query: 201 NPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQF--SLDSFAWTPVLIGLAISIM 258
+ + K + L L+ L + ++S F L GLAIS+M
Sbjct: 213 ----DFIAVTKQKPVLSLYLVIFLIQLAIMGVNPLLSLFVTELTPAENVAFFAGLAISVM 268
Query: 259 GLMDILTQIFI 269
G +++T F+
Sbjct: 269 GFANMMTAPFL 279
pir||G64494 quinolone resistance protein norA homolog - Methanococcus
jannaschii >gi|1592184 (U67596) multidrug-efflux
transporter (bmr1) [Methanococcus jannaschii]
Length = 386
Score = 65.2 bits (156), Expect = 1e-09
Identities = 77/351 (21%), Positives = 149/351 (41%), Gaps = 22/351 (6%)
Query: 33 VAPFANAHDQALIVTSL-----MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
+AP + Q L T+L +AL A +G LSD +G+K ++ +
Sbjct: 25 IAPIMAIYAQTLGATNLEIGLIFGSFALARTVAQIPVGVLSDIYGKKFFIVCGTFFYGVS 84
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGTI 146
L++ ++ + RI G+ + + +Y A I + + G +A+ +G
Sbjct: 85 TLMYNFVSTVLGFLIVRIFTGIFSAFVTPVAGSYIAAIAPKTRLGEYMGIFNSAITLGFG 144
Query: 147 SGPTVGGLLAH-FGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
GP +GG+LA +G +PFYF + I + +++ E + +K+++
Sbjct: 145 IGPFIGGILADMYGIKMPFYFCGFLGILAAII-SYMKLEDIVFNKNKEKIDVKKISTLFS 203
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
F+ L+ +N + + + N + A ++ +++ ++ T +G I++ ++ L
Sbjct: 204 -FEFLKNRNFSSSFIINVSNVMINAGIYAYLALYAI-NYNITISQVGFMIALTNILMALL 261
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
Q KL N I + + II++ ++ LS S + + ++ I A G SI T
Sbjct: 262 QRSFGKLYDKLGN----IMIIIGIFIISFGMYLLST-STTFLTILASLTIIAVGSSISST 316
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPAL 376
A K + +G+ G L + IG IG +S G A L
Sbjct: 317 ATTSLAVKDIPTHRKGEAMG----LFTTSINIGMFIGA---VSFGFLADIL 360
emb|CAA22731| (AL035161) putative efflux protein [Streptomyces coelicolor]
Length = 815
Score = 63.2 bits (151), Expect = 4e-09
Identities = 84/392 (21%), Positives = 153/392 (38%), Gaps = 77/392 (19%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDRFG 72
V M+A A +Q ++ T+L I Y L + P G L D FG
Sbjct: 52 VGLMLALLLAALEQMIVATALPKIVGELHGLDKMSWAITAYLLTSTVGLPIYGKLGDLFG 111
Query: 73 RKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL-TGGNIVTLFAYFADITDEENRT 131
RK + ++ +G + G A ++ L R + G+ GG ++ + A ADI R
Sbjct: 112 RKGVFQFAILVFVVGSALAGRAQTMDQLIAFRAVQGVGAGGLMIGVQAIIADIVPPRERA 171
Query: 132 KVFGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETH 190
+ G A+ G+ +++GP +GG H FY + + A V+
Sbjct: 172 RYMGLIGASFGLASVAGPLLGGYFTDHLSWRWCFYINVPFGLVTMAVVAVVL-------- 223
Query: 191 RTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAW-TPV 249
+L R + RL G LL +++ + +AW + V
Sbjct: 224 -----------------KLPRPRVKPRLDILGALLLAAASTCLVLLTSWGGTEYAWGSRV 266
Query: 250 LIGLAISIMG--LMDILTQIFIMPRL--LKLANEDKLIRLALVCEIIAYLLFALSAFSKM 305
++GLA + L+ ++ + F L L+L + ALV ++ LF +++
Sbjct: 267 ILGLAAGAVAATLLFLVAEHFAPEPLIPLRLFRDSIFNVTALVGLVVGVALFGAASY--- 323
Query: 306 WPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIG-PLIGGQ 364
P F+ ++ A+++E G L L + V+G +I GQ
Sbjct: 324 LPTFL-------------------QMVDGASATESGLLM-----LPMMGGVVGASIISGQ 359
Query: 365 IYISLGHF-APALMGFIFLIIALLVLSKTKSD 395
+ GH+ ++G ++ + +LS+ +D
Sbjct: 360 LISRTGHYRIHPILGSALSVVGMWLLSRLDAD 391
dbj|BAA07390| (D38215) tcr3 [Streptomyces aureofaciens]
Length = 512
Score = 62.8 bits (150), Expect = 5e-09
Identities = 44/149 (29%), Positives = 69/149 (45%), Gaps = 18/149 (12%)
Query: 42 QALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLF 101
QA ++T Y + + A P G LSD +GRKP+ L ++A +G +A S+ L
Sbjct: 67 QAWVITG----YLVSSTIAMPFYGKLSDIYGRKPLYLAAIAVFIVGSAACAMANSMETLA 122
Query: 102 LGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGN 160
+ R++ G G +++L A AD+ R + F + A ++ GP VGGL A G
Sbjct: 123 IARVLQGFGGAGLMSLPTAVIADLAPVRERGRYFSYLMMAWVAASVLGPLVGGLFAGAGE 182
Query: 161 -------------SVPFYFGALISIANLL 176
+VP AL+S+ L
Sbjct: 183 ILGVTGWRWAFLINVPLGLVALLSVRKAL 211
emb|CAB40866.1| (AL049628) putative exporter [Streptomyces coelicolor]
Length = 531
Score = 62.5 bits (149), Expect = 6e-09
Identities = 46/157 (29%), Positives = 71/157 (44%), Gaps = 12/157 (7%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGY 88
+P +V + +VT+ Y L T + P G L D +GRK + + S+ G
Sbjct: 46 MPTIVGELGGLEHLSWVVTA----YTLATAASTPLWGKLGDMYGRKGVFMTSIVIFLAGS 101
Query: 89 LIFGLAGSLWMLFLGRIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTIS 147
+ G+A + L R + GL GG +V + A D+ R K G A + + I
Sbjct: 102 ALSGMAQDMGQLIGFRAVQGLGAGGLMVGVMAIIGDLIPPRERGKYQGMIAGVMALSMIG 161
Query: 148 GPTVGGLLA-HFGNSVPFYFG------ALISIANLLY 177
GP VGG + H+G FY ALI+I+ +L+
Sbjct: 162 GPLVGGTITDHWGWRWSFYINIPLGVIALIAISAVLH 198
sp|P55705|Y4XM_RHISN HYPOTHETICAL TRANSPORT PROTEIN Y4XM >gi|2182721 (AE000106) Y4xM
[Rhizobium sp. NGR234]
Length = 404
Score = 62.5 bits (149), Expect = 6e-09
Identities = 70/312 (22%), Positives = 129/312 (40%), Gaps = 33/312 (10%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADI 124
G + DR+G + +++ +L G A+ L+ A +W + R + G G I AY ++
Sbjct: 73 GRMGDRYGNRLMMVRALLGLAITQLLVAFAQDVWTILALRFLQGACAGYIAPAQAYGVEV 132
Query: 125 TDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNE 184
T +R ++F W A VG++ G +GGL+ +++PF L + + A V
Sbjct: 133 TGGRDRARLFAWLQVATNVGSLGGAFLGGLIL---DALPFAAVNLTAGVICAFCAAVAWT 189
Query: 185 SLP------ETHRTRNFSLKQLNPFT--QLFQLLRMKNLNRLLFAGILLWLPNGALQAII 236
SLP +T + P T +F LL + L LL + ++L +P
Sbjct: 190 SLPVPLGGAGLTKTAKATTVSCAPSTGVSVFGLLALMGL--LLASRMVLQVP-------F 240
Query: 237 SQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEII---- 292
S + + + + GL+ ++ L + + E + L C ++
Sbjct: 241 SLYMSEVYGSQHWITGLSYGLLAL-----GFVVAAPVWARTFEGREPSFVLGCNVLIAGG 295
Query: 293 AYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT--AFNGKLSKSATSSEQGKLQGGSQAL 350
++ L+ ++ F A F +G + GT +S + S QG + G +Q
Sbjct: 296 CFVATGLAGSTRAIGLF--AALYFTWGALLGGTTPVLLSLVSAATRSERQGSVLGLAQTC 353
Query: 351 QALTRVIGPLIG 362
Q V+G + G
Sbjct: 354 QQGASVVGIIAG 365
emb|CAA85742.1| (Z37515) TetA [synthetic construct]
Length = 112
Score = 62.1 bits (148), Expect = 8e-09
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P ++ +++D L+A+YAL F AP LG+LSDRFGR+PILL+SLAG+
Sbjct: 26 PVLPGLLRDLVHSNDVTAHYGILLALYALVQFACAPVLGALSDRFGRRPILLVSLAGARS 85
Query: 87 G 87
G
Sbjct: 86 G 86
gb|AAF12391.1|AE001863_16 (AE001863) drug transport protein, putative [Deinococcus
radiodurans]
Length = 698
Score = 61.7 bits (147), Expect = 1e-08
Identities = 80/364 (21%), Positives = 145/364 (38%), Gaps = 59/364 (16%)
Query: 45 IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM-LFLG 103
+ T + Y L + P G LSD +GRKPIL+ + G + GLAG ++ FLG
Sbjct: 69 LYTWVTTAYLLASTVMVPIYGKLSDLYGRKPILIFGILVFLFGSALCGLAGEPFLGNFLG 128
Query: 104 ---------RIIDGLTGGNI-VTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG 153
R + G G + T F AD+ D R K G A G+ + GP +GG
Sbjct: 129 GGMNQLIAFRAVAGFGGAALFTTAFTILADMFDPTERAKFGGLFGAIFGLSMVLGPLIGG 188
Query: 154 LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPE-THRTRNFSLKQLNPFTQLFQLLRM 212
L +++ + + ++ + F++ +P+ HR +
Sbjct: 189 WLT---DTLSWRWTFYANLPLGILALFLIISKMPKLAHRMQ------------------- 226
Query: 213 KNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPR 272
++ + G L L + + ++AW I +++ L+ ++ +F+ R
Sbjct: 227 ---GKIDYWGAALILATTIPLLLALTWGGTTYAWNSSTI-ISLFAGSLVSLIAFLFVERR 282
Query: 273 LLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLS 332
D +I L L + + + L++F FF + MF+ + + G
Sbjct: 283 -----TPDAIIPLTLF-NVPMFSIGNLASFVMGMAFFGVVMFLPLYMQMVLGV------- 329
Query: 333 KSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALM-GFIFLIIALLVLSK 391
S T+S G S L ++ + G I G + P ++ G + LI+ + L+
Sbjct: 330 -SPTAS------GTSMLPLMLGLMLSSITSGNIVARTGKYKPWMIGGALILILGMWTLTG 382
Query: 392 TKSD 395
+SD
Sbjct: 383 IRSD 386
emb|CAA20760.1| (AL031536) MSF transporter [Schizosaccharomyces pombe]
Length = 531
Score = 61.3 bits (146), Expect = 1e-08
Identities = 63/232 (27%), Positives = 107/232 (45%), Gaps = 30/232 (12%)
Query: 30 PFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYL 89
P + + F ++ + IVT+ Y + P G LSD FGR+P ++ + A LG
Sbjct: 56 PVIGSEFKLMNNASYIVTA----YLITNTAFQPLYGRLSDIFGRRPTVVFANAAFTLGTF 111
Query: 90 IFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYF-ADITDEENRTKVFGWTAAAVGVGTISG 148
G++ SL L + R + G+ GG + T+ + +DI R G T G+G G
Sbjct: 112 WCGISRSLPELCMARALAGIGGGGLGTMSSIISSDIVSLRERGTWQGITNIVWGIGGSLG 171
Query: 149 PTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLF 207
+GGL+A +G F+F + I + + A+ + + T R N SL
Sbjct: 172 GPLGGLIAQRWGWRTAFHFQVPMGILSTILVAWRVR--VKPTVRNSNASL---------- 219
Query: 208 QLLRMKNLNRLLFAGILLWLPNGALQAIISQFSL--DSFAW-TPVLIGLAIS 256
L+R+ + G L + + A++ F++ D+F W +PV+I L +S
Sbjct: 220 -------LSRIDYLGSFLLVT--GITALVVTFNMGGDAFPWVSPVIITLLVS 262
emb|CAB12101| (Z99105) multidrug-efflux transporter [Bacillus subtilis]
Length = 426
Score = 60.9 bits (145), Expect = 2e-08
Identities = 83/358 (23%), Positives = 134/358 (37%), Gaps = 69/358 (19%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT 110
A Y + P G LSD +GRK + L S +G + G+A ++ L + R I G+
Sbjct: 54 ASYMVAVMAGMPIYGKLSDMYGRKRFSCLDLFFSLIGSALCGIAQTMNQLIIFRAIQGIG 113
Query: 111 GGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP----FY 165
GG ++ + F D+ E R K+ G A G+ ++ GP +G ++ +S+ FY
Sbjct: 114 GGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT---DSISWHWVFY 170
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILL 225
I +L + ESL HR +
Sbjct: 171 INVPIGALSLFFIIRYYKESL--EHRKQKID----------------------------- 199
Query: 226 WLPNGALQAIIS----QFSLD----SFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLA 277
W GA+ ++S F+L+ ++ W +I I+GL + FI +++
Sbjct: 200 W--GGAITLVVSIVCLMFALELGGKTYDWN------SIQIIGLFIVFAVFFIAFFIVEKK 251
Query: 278 NEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATS 337
ED A + + AF F ILA+FI F ++ + SA S
Sbjct: 252 AEDPARYSARSSRMACLRQRQILAFLYEGIFIILAVFIPTFVQPVY--------ASSAAS 303
Query: 338 SEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLSKTKSD 395
+ G + VI +IGG L+ I I +L+LS D
Sbjct: 304 A------GFILTPMMIGSVIRSMIGGIFQTKASFRNLMLISVIAFFIGMLLLSNMTPD 355
sp|P39886|TCMA_STRGA TETRACENOMYCIN C RESISTANCE AND EXPORT PROTEIN
>gi|282569|pir||A41901 metabolite export pump of
tetracenomycin C resistance TcmA - Streptomyces
glaucescens >gi|153490 (M80674) tetracenomycin C
resistance and export protein [Streptomyces glaucescens]
Length = 538
Score = 60.9 bits (145), Expect = 2e-08
Identities = 38/138 (27%), Positives = 64/138 (45%), Gaps = 2/138 (1%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
Y L + G L DRFG + L+ +AG A+ GL+GS+ + + R++ GL G
Sbjct: 70 YLLALAVSLITAGKLGDRFGHRQTFLVGVAGFAVTSAAIGLSGSVAAIVVFRVLQGLFGA 129
Query: 113 NIVTLFAYFADITDEENRTKV-FGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFYFGALI 170
+ +T + + G + VG T +GP +GGLL H G F+ +
Sbjct: 130 LMQPSALGLLRVTFPPGKLNMAIGIWSGVVGASTAAGPIIGGLLVQHVGWEAVFFINVPV 189
Query: 171 SIANLLYGAFVMNESLPE 188
+A L+ G ++ ++ E
Sbjct: 190 GLAALVAGLVILTDARAE 207
gb|AAD56432.1|AF158699_4 (AF158699) major facilitator superfamily transporter homolog
[Burkholderia cepacia]
Length = 531
Score = 60.5 bits (144), Expect = 2e-08
Identities = 44/152 (28%), Positives = 73/152 (47%), Gaps = 7/152 (4%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGY 88
+P +VA A + TS Y L + P G L D +GRKP ++ S+ +
Sbjct: 45 LPTIVAELRGFDLYAWVATS----YLLSSVITVPIFGRLGDYYGRKPFVIASIVVFSGAS 100
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADI-TDEENRTKVFGWTAAAVGVGTI 146
++ G+A + L L R + G+ GG +V T FA D+ D R + ++A G+
Sbjct: 101 VLCGMANDMLYLVLARGLQGIGGGMLVGTAFACIPDLFPDSVVRLRWQVLMSSAFGIANA 160
Query: 147 SGPTVGGLLAH-FGNSVPFYFGALISIANLLY 177
GP++GG+L FG FY + + +L++
Sbjct: 161 VGPSLGGVLTQTFGWRSVFYVNLPVGLLSLVF 192
emb|CAB37973| (X76640) hypothetical protein [Myxococcus xanthus]
Length = 507
Score = 60.5 bits (144), Expect = 2e-08
Identities = 40/134 (29%), Positives = 61/134 (44%), Gaps = 5/134 (3%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
S +P +V A + T+ Y L + P G L+D +GRKP+L+ +
Sbjct: 28 STAMPTVVGELGGIQHYAWVFTA----YMLSSTITVPIYGKLADLYGRKPVLVFGIVLFL 83
Query: 86 LGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVG 144
+G + GL+ S+ ML R + GL G + + DI E R KV G +A G+
Sbjct: 84 VGSIASGLSTSMAMLIGFRTLQGLGAGAMQPVALTVIGDIYTLEERAKVQGAFSAVWGIA 143
Query: 145 TISGPTVGGLLAHF 158
+ GP GG L +
Sbjct: 144 GLIGPITGGFLVKY 157
ref|NP_009952.1|YCR023C| Membrane transporter; Ycr023cp >gi|140474|sp|P25351|YCR3_YEAST
HYPOTHETICAL 69.2 KD PROTEIN IN HSP30-PMP1 INTERGENIC
REGION >gi|83212|pir||S19434 probable transport protein
YCR023c - yeast (Saccharomyces cerevisiae)
>gi|1907167|emb|CAA42315| (X59720) YCR023c, len:611
[Saccharomyces cerevisiae]
Length = 611
Score = 60.5 bits (144), Expect = 2e-08
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 7/147 (4%)
Query: 27 PVVPFMVAPFANAHDQALIVTS---LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAG 83
P V FMV F A + A + L + +ALC +A G S++ GRK L L G
Sbjct: 39 PYVYFMVRDFNIAPNDAQVSKYSGYLSSSFALCQVISAYHWGRFSEKHGRKITLTCGLIG 98
Query: 84 SALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADI-TDEENRTKVFGWTAAAVG 142
+++ LI G + + + + R + GL GN+ + +I T+ +++ F
Sbjct: 99 TSVSLLILGFSHNFYQALVARSLMGLLNGNVGVIRTIIGEIATERKHQALAFSTMPLLFQ 158
Query: 143 VGTISGPTVGGLLAHFG---NSVPFYF 166
G + GP +GG L N VP +F
Sbjct: 159 FGAVVGPMIGGFLVFRDGTMNEVPLWF 185
gi|3169811 (AF029304) Fnx1p [Schizosaccharomyces pombe]
Length = 531
Score = 59.7 bits (142), Expect = 4e-08
Identities = 62/232 (26%), Positives = 106/232 (44%), Gaps = 30/232 (12%)
Query: 30 PFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYL 89
P + + F ++ + I T+ Y + P G LSD FGR+P ++ + A LG
Sbjct: 56 PVIGSEFKLMNNASYIATA----YLITNTAFQPLYGRLSDIFGRRPTVVFANAAFTLGTF 111
Query: 90 IFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYF-ADITDEENRTKVFGWTAAAVGVGTISG 148
G++ SL L + R + G+ GG + T+ + +DI R G T G+G G
Sbjct: 112 WCGISRSLPELCMARALAGIGGGGLGTMSSIISSDIVSLRERGTWQGITNIVWGIGGSLG 171
Query: 149 PTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLF 207
+GGL+A +G F+F + I + + A+ + + T R N SL
Sbjct: 172 GPLGGLIAQRWGWRTAFHFQVPMGILSTILVAWRVR--VKPTVRNSNASL---------- 219
Query: 208 QLLRMKNLNRLLFAGILLWLPNGALQAIISQFSL--DSFAW-TPVLIGLAIS 256
L+R+ + G L + + A++ F++ D+F W +PV+I L +S
Sbjct: 220 -------LSRIDYLGSFLLVT--GITALVVTFNMGGDAFPWVSPVIITLLVS 262
emb|CAA74477.1| (Y14081) hypothetical protein [Bacillus subtilis]
>gi|2633394|emb|CAB12898| (Z99109) similar to
multidrug-efflux transporter [Bacillus subtilis]
Length = 401
Score = 59.3 bits (141), Expect = 6e-08
Identities = 83/347 (23%), Positives = 144/347 (40%), Gaps = 23/347 (6%)
Query: 30 PFMVAPFANAHDQALIVTSLM-AIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGY 88
PFMV + ++++ L+ ++ F A G ++DR GR+ +L +L +
Sbjct: 35 PFMVLYLHEQLNGSIMMPMLIISLQPFADIFLTLAAGRVTDRLGRRTAILTALLLQSAAM 94
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGTIS 147
F A ++ + +++G+ + A A+ T E R++VF A G +
Sbjct: 95 TGFVFAEHAYVFAILYVMNGIGRSLYIPASRAQIAESTPESRRSEVFAVINAIYSTGLTA 154
Query: 148 GPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLF 207
GP VG LL N P + AL + A +Y + LPET K L+P
Sbjct: 155 GPLVGMLLY---NHNPVWIFALDAAALFIY-FLIAALKLPET--------KPLHPAVTP- 201
Query: 208 QLLRMKNLNRLLFAGILLWLPNGALQA----IISQFSLDSFAWTPVLIGLAISIMGLMDI 263
++ + R + +LL LP L A FS + F+ ++ + + L
Sbjct: 202 KMSASFTIYRPVLLLLLLSLPISMLYAQTETTYRLFSKNMFSDYLSMLTIYSAAKALFSC 261
Query: 264 LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIF 323
+ Q+ ++ KL+ + ++ + +C +A FA S M ++ + G+SI
Sbjct: 262 VLQVPLVKGTEKLSMK-TILFITYICYSLAAAGFACSTSLTM---LLVTAAVMTVGESIG 317
Query: 324 GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG 370
T +SK A G+ ++R IGPL GG I S G
Sbjct: 318 LTHIQTFISKLAPPHLLGRFYAVYGLHWDISRSIGPLAGGLILTSFG 364
gb|AAC48874.1| (U66885) lacZ-alpha [bacteriophage lambda] >gi|2501802 (U87107)
beta-galactosidase [Cloning vector pAL-F]
Length = 154
Score = 58.9 bits (140), Expect = 7e-08
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 50 MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM 99
+A+YAL F AP LG+LSDRFGR+P+LL SL G+ + Y I LW+
Sbjct: 96 LALYALMQFLCAPVLGALSDRFGRRPVLLASLLGATIDYAIMATTPVLWI 145
dbj|BAA08941| (D50453) multidrug resistance protein(EmrB) homologue of H.
influenzae [Bacillus subtilis]
Length = 354
Score = 58.9 bits (140), Expect = 7e-08
Identities = 67/289 (23%), Positives = 113/289 (38%), Gaps = 55/289 (19%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT 110
A Y + P G LSD +GRK + L S +G + G+A ++ L + R I G+
Sbjct: 54 ASYMVAVMAGMPIYGKLSDMYGRKRFSCLDLFFSLIGSALCGIAQTMNQLIIFRAIQGIG 113
Query: 111 GGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP----FY 165
GG ++ + F D+ E R K+ G A G+ ++ GP +G ++ +S+ FY
Sbjct: 114 GGALLPIAFTIIFDLFPPEKRGKMSGMFGAVFGLSSVLGPLLGAIIT---DSISWHWVFY 170
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILL 225
I +L + ESL HR +
Sbjct: 171 INVPIGALSLFFIIRYYKESL--EHRKQKID----------------------------- 199
Query: 226 WLPNGALQAIIS----QFSLD----SFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLA 277
W GA+ ++S F+L+ ++ W +I I+GL + FI +++
Sbjct: 200 W--GGAITLVVSIVCLMFALELGGKTYDWN------SIQIIGLFIVFAVFFIAFFIVEKK 251
Query: 278 NEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTA 326
ED A + + AF F ILA+FI F ++ ++
Sbjct: 252 AEDPARYSARSSRMACLRQRQILAFLYEGIFIILAVFIPTFVQPVYASS 300
emb|CAB71269.1| (AL138598) putative integral membrane efflux protein. [Streptomyces
coelicolor A3(2)]
Length = 521
Score = 57.8 bits (137), Expect = 2e-07
Identities = 43/128 (33%), Positives = 59/128 (45%), Gaps = 2/128 (1%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFAD 123
G LSDRFGRK +L + L AL L A + ML R + G++ ++ A D
Sbjct: 68 GGLSDRFGRKRLLSVGLGAFALTSLGAAFASNAEMLITFRALMGISAALMMPATLAIIKD 127
Query: 124 ITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFGNSVPFYFGALISIANLLYGAFVM 182
+ E + K G + A VG GP V G LL HF F ++ L+ GA ++
Sbjct: 128 VFPREEQGKAIGIWSGAAAVGVPLGPLVSGLLLEHFWWGSMFLINVPLAAIALIGGAKLI 187
Query: 183 NESLPETH 190
ES E H
Sbjct: 188 PESKAEGH 195
emb|CAB62752.1| (AL133424) putative membrane transport protein [Streptomyces
coelicolor A3(2)]
Length = 539
Score = 57.8 bits (137), Expect = 2e-07
Identities = 43/142 (30%), Positives = 67/142 (46%), Gaps = 18/142 (12%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
++ + L+A+ A P G LSD F +K +L +SL+ +G L+ G + + +L
Sbjct: 62 VVTSELLAMTA-----TVPLWGKLSDLFNKKLLLQLSLSMFVVGSLLAGFSHGVGLLIFS 116
Query: 104 RIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH----- 157
R++ G+ G + L A + K G A VGT++GP VGG+L
Sbjct: 117 RVVQGIGAGGLTALAQVVMASVIPPRQLGKYAGIFGAVFAVGTVAGPLVGGVLVDTSWLG 176
Query: 158 ----FGNSVPFYFGALISIANL 175
F VPF AL++IA L
Sbjct: 177 WRWCFFIGVPF---ALLAIALL 195
emb|CAB12938| (Z99109) similar to multidrug resistance protein [Bacillus
subtilis]
Length = 422
Score = 57.8 bits (137), Expect = 2e-07
Identities = 78/353 (22%), Positives = 142/353 (40%), Gaps = 25/353 (7%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
S ++P + + H V+ ++ +++L FA P +G L+DRF RK I++ L
Sbjct: 27 SMLIPILPKMKSELHLSQFQVSLVITVFSLIAAFAIPIVGYLADRFSRKVIIIPCLILYG 86
Query: 86 LGYLIFGLAGSLW-----MLFLGRIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAA 139
G L+ G A + + GR + G+ G A D+ +KV G A
Sbjct: 87 AGGLLAGFAAGFFDNAYPWVMAGRALQGIGAAGTGPIAMALTGDLFKGAQESKVLGLVEA 146
Query: 140 AVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ 199
+ G+G + P +G L+A F+ + I +++ + E E K+
Sbjct: 147 SNGMGKVLSPIIGSLIALLVWYGAFFAFPVFCIISIVLTWIFIKEKKKE---------KE 197
Query: 200 LNPFTQLFQ--LLRMKNLNRLLF----AGILLWLPNGALQAIISQFSLDSFAWTPVLIGL 253
P Q + L K+ R LF AG + +S ++ V GL
Sbjct: 198 PPPIGQYAKGLLSVFKHEGRWLFTAYLAGATCLFTLFGILFYLSDVLEKTYDTDGVKKGL 257
Query: 254 AISIMGLMDILTQIFIMPRL-LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILA 312
++I L+ +T ++ K + KLI L L ++Y A +F + FI
Sbjct: 258 ILAIPLLVMCVTSYTTGSKIGQKQSLMKKLIVLGLAFMTVSY---AALSFIENLVLFISV 314
Query: 313 MFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQI 365
+ + + G + N ++ + +G + +++ L IGP I G++
Sbjct: 315 LVLSSIGSGLVLPCVNSFITGAVGKERRGFVTSLYGSVRFLGVAIGPPIFGRL 367
emb|CAA70662| (Y09476) YitG [Bacillus subtilis]
Length = 425
Score = 57.8 bits (137), Expect = 2e-07
Identities = 78/353 (22%), Positives = 142/353 (40%), Gaps = 25/353 (7%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSA 85
S ++P + + H V+ ++ +++L FA P +G L+DRF RK I++ L
Sbjct: 30 SMLIPILPKMKSELHLSQFQVSLVITVFSLIAAFAIPIVGYLADRFSRKVIIIPCLILYG 89
Query: 86 LGYLIFGLAGSLW-----MLFLGRIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAA 139
G L+ G A + + GR + G+ G A D+ +KV G A
Sbjct: 90 AGGLLAGFAAGFFDNAYPWVMAGRALQGIGAAGTGPIAMALTGDLFKGAQESKVLGLVEA 149
Query: 140 AVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ 199
+ G+G + P +G L+A F+ + I +++ + E E K+
Sbjct: 150 SNGMGKVLSPIIGSLIALLVWYGAFFAFPVFCIISIVLTWIFIKEKKKE---------KE 200
Query: 200 LNPFTQLFQ--LLRMKNLNRLLF----AGILLWLPNGALQAIISQFSLDSFAWTPVLIGL 253
P Q + L K+ R LF AG + +S ++ V GL
Sbjct: 201 PPPIGQYAKGLLSVFKHEGRWLFTAYLAGATCLFTLFGILFYLSDVLEKTYDTDGVKKGL 260
Query: 254 AISIMGLMDILTQIFIMPRL-LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILA 312
++I L+ +T ++ K + KLI L L ++Y A +F + FI
Sbjct: 261 ILAIPLLVMCVTSYTTGSKIGQKQSLMKKLIVLGLAFMTVSY---AALSFIENLVLFISV 317
Query: 313 MFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQI 365
+ + + G + N ++ + +G + +++ L IGP I G++
Sbjct: 318 LVLSSIGSGLVLPCVNSFITGAVGKERRGFVTSLYGSVRFLGVAIGPPIFGRL 370
gb|AAF12254.1|AE001862_80 (AE001862) drug transport protein, putative [Deinococcus
radiodurans]
Length = 643
Score = 57.4 bits (136), Expect = 2e-07
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 27/151 (17%)
Query: 32 MVAPFANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDRFGRKP 75
++A F +A DQ ++ +L I Y L + P G LSD +GRKP
Sbjct: 36 LLALFLSALDQTIVSAALPRIVSELNGLNLYSWVTTAYLLSSAALVPIYGKLSDLYGRKP 95
Query: 76 ILLISLAGSALGYLIFGLAGS----------LWMLFLGRIIDGLTGGNIVTL-FAYFADI 124
+L+ + +G + GL+G + L + R + G+ + T+ FA AD+
Sbjct: 96 VLVFGIVVFLIGSALCGLSGEPFLGNLFGSPMMQLVVFRGLQGIGAAALATVAFAIVADL 155
Query: 125 TDEENRTKVFGWTAAAVGVGTISGPTVGGLL 155
+ R K G A G+ ++ GP +GG L
Sbjct: 156 FEPRERAKYQGLFGAVFGLSSVVGPLLGGFL 186
gb|AAF10899.1|AE001979_5 (AE001979) multidrug-efflux transporter [Deinococcus radiodurans]
Length = 477
Score = 57.4 bits (136), Expect = 2e-07
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 24/173 (13%)
Query: 29 VPFMVAPFANAHDQALIVTSL----------------MAIYALCTFFAAPALGSLSDRFG 72
V +V F NA + +++ T++ A+Y L + +P G SD G
Sbjct: 21 VGLIVGVFLNALESSVVATAMPSVINDLHGQSLYALPFAMYLLTSTVGSPLWGRASDLVG 80
Query: 73 RKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRT 131
RK + L+ +G + G A S+ L R + GL G ++TL ++ + R+
Sbjct: 81 RKRLYLVGAVLFLVGSALCGAAQSMGWLIGARALQGLGAGALLTLSMTIVGELYSLQERS 140
Query: 132 KVFGWTAAAVGVGTISGPTVGGLLAH-------FGNSVPFYFGALISIANLLY 177
+V + +A G+ ++GP +GG L F S+PF AL ++ L+
Sbjct: 141 RVQAFISAVWGISGLAGPLLGGWLTETLSWRWTFYVSLPFGLLALFMVSRFLH 193
emb|CAA92452.1| (Z68215) cDNA EST yk317f3.3 comes from this gene [Caenorhabditis
elegans]
Length = 320
Score = 57.4 bits (136), Expect = 2e-07
Identities = 62/274 (22%), Positives = 116/274 (41%), Gaps = 16/274 (5%)
Query: 125 TDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP--FYFGALISIANLLYGAFVM 182
T + RT FG G+G I P G + AL ++ +L+ +
Sbjct: 42 TPGKERTSAFGRMGLTFGIGFIFVPIFSIAATKLGGDLAPLLVSAALCALPSLVLETCIE 101
Query: 183 NESLPETHRTRNFS--LKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQ--AIISQ 238
+S T N + Q+N T + ++L+ + A +++ G + II+
Sbjct: 102 KKSYEHEISTDNANGPPPQIN-ITNVVRILQKPGV-----ANVMIKKNGGVVPFIMIIAL 155
Query: 239 FSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFA 298
+ ++ F T + +MG+ + + F + L K +E L+ + + +I Y LF
Sbjct: 156 YIIEKFNATNTENQIMQMMMGVFIMFSNGFGVIWLRKKFDEQTLLIIGSLSFVIGYTLFT 215
Query: 299 LSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIG 358
F W ++ F+ + G S+ T + L+ SEQG + G + +L +L R
Sbjct: 216 F-VFFNFWMLLVIMPFV-SLGMSVVATCADSLLTALVDESEQGIVLGTATSLNSLVRTFS 273
Query: 359 PLIGGQIYISLGHFAPALMGFI--FLIIALLVLS 390
PL G + + G + L+G + L I+ +V+S
Sbjct: 274 PLFAGYLLQNYGFQSLTLLGIVGSLLAISFMVVS 307
emb|CAB55652.1| (AL117385) putative transmembrane efflux protein [Streptomyces
coelicolor A3(2)]
Length = 489
Score = 57.0 bits (135), Expect = 3e-07
Identities = 73/290 (25%), Positives = 116/290 (39%), Gaps = 39/290 (13%)
Query: 40 HDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM 99
H Q + ++ Y L + G +DRFGRK + L +A + L+ LA SL
Sbjct: 47 HTQLTGLQWIVDAYVLLVAMLLLSGGVFADRFGRKRVYLSGVAVFTVASLLCSLAPSLGW 106
Query: 100 LFLGRIIDGLTGGNI--VTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH 157
L GR++ G+ + +L A + R + G A G+G +GP GG+L
Sbjct: 107 LVAGRMLQGIGAAALSPASLALLAAAHPVPQERVRAIGLWAGISGIGLAAGPVAGGVLTD 166
Query: 158 -FGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLN-PFTQLFQLLRMKNL 215
FG F I + LL G + ES RN ++ P T L
Sbjct: 167 AFGWPAIFLVNLPIGVVLLLVGLRHLGES-------RNPGAPAIDVPGTVL--------- 210
Query: 216 NRLLFAGILLW-LPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMD--ILTQIFIMPR 272
+L G+L + L G + S L SFA +L+ +++ D +L + R
Sbjct: 211 -SVLAVGVLTYGLIEGGARGWTSPVILGSFATAVILLAAFVAVEAHRDAPMLPLRLLRQR 269
Query: 273 LLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSI 322
L ++N A+V ++ + L S FF F++ G S+
Sbjct: 270 LFTVSN------TAMV--VVGFALMGSS-------FFFSQFFVYVQGSSV 304
gb|AAD42406.1|AF157493_14 (AF157493) putative transporter [Zymomonas mobilis]
Length = 431
Score = 57.0 bits (135), Expect = 3e-07
Identities = 81/363 (22%), Positives = 145/363 (39%), Gaps = 30/363 (8%)
Query: 40 HDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAG---SALGYLIFGLAG- 95
H A V + A+ F P G +D F R+ L+ + A +ALG I L+G
Sbjct: 48 HHNATAVGIITALQFAPVFLLLPFSGYAADHFDRRKFLIFTQAAMGLTALGLGILTLSGL 107
Query: 96 -SLWMLFL-GRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG 153
LW ++L G I+ +T + + +++ EE+ + + + GP + G
Sbjct: 108 VRLWHVYLFGLILGAITAIDAPARQTFVSELVKEEDIPNAVALNSTSFNSARLIGPAISG 167
Query: 154 -LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRM 212
L+A FG+ F A A +L +F+ + L + R+ Q + + F+ +R
Sbjct: 168 FLIAAFGSGGVFLLNAASFGAVILALSFLRLDELYQ----RDKPTDQKHGLSDGFRYVRH 223
Query: 213 KNLNRLLFAGILLWLPNGA-LQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMP 271
+ + + A + L G IS ++ F L GL +S M + + +F+
Sbjct: 224 RPDIKTILAMLFLICTFGLNFPIFISTMAVTVFHGER-LYGLLMSSMAIGSVTGTLFV-- 280
Query: 272 RLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKL 331
+ IRL + I+ + L A F L + + IF TA N +
Sbjct: 281 ----AGQANPHIRLLFLSTILFGISCLLGALMPDALTFGLVLVLIGLSAQIFTTASNSLV 336
Query: 332 SKSATSSEQGKL--------QGGSQALQALTRVIGPLIGGQIYISLG---HFAPALMGFI 380
S S +G++ GG+ L + + G + + +G F AL+G
Sbjct: 337 QLSTDSKVRGRVVAILLAVSVGGTPVGSLLIGRVADIWGARYALGIGAISGFTAALIGLC 396
Query: 381 FLI 383
+L+
Sbjct: 397 YLV 399
gi|2649251 (AE001012) multidrug resistance protein [Archaeoglobus fulgidus]
Length = 371
Score = 57.0 bits (135), Expect = 3e-07
Identities = 69/305 (22%), Positives = 128/305 (41%), Gaps = 26/305 (8%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMA-IYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
S V+P ++ +A++ ++ +++ A ++AL A G LS+ +GR+ L+ S
Sbjct: 16 SCVIP-IIPSYASSLGASVFLSAFAAGVFALFPAIAMTPFGMLSEVYGRRRFLVAGAVTS 74
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGG-NIVTLFAYFADITDEENRTKVFGWTAAAVGV 143
L L++ + + +L R + GL I ++ A ADI++E R + G A+ +
Sbjct: 75 LLASLLYLQSSTAELLVFSRTLHGLGSALYIPSINALVADISEESRRGEAMGKLQTALML 134
Query: 144 GTISGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNP 202
G +GP GG ++ FG F + S A L+ V S + ++L P
Sbjct: 135 GFFAGPLAGGFVSDFFGVKAVFLLALVFSAAALVPVVGVRERSKGGEIGKQFIFPRKLAP 194
Query: 203 FTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIIS-QFSLDSFAWTPVLIGLAISIMGLM 261
LFA + + + G+ A+ + F + GL ++++ L
Sbjct: 195 ----------------LFAVMFVGMATGSSLALFAIPFYAPELNISQQQAGLLVAVLFLF 238
Query: 262 DILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDS 321
+ ++ P + + + L + LF SAF +PF LA + G+
Sbjct: 239 SAIIRV---PAGILADRAGRNVTALLGMVVTGLGLF--SAFKPDFPFLFLASLLCGAGNG 293
Query: 322 IFGTA 326
I TA
Sbjct: 294 IVNTA 298
Score = 46.9 bits (109), Expect = 3e-04
Identities = 36/130 (27%), Positives = 58/130 (43%), Gaps = 6/130 (4%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGY 88
+PF + QA ++ +++ +++ PA G L+DR GR L+ + + LG
Sbjct: 214 IPFYAPELNISQQQAGLLVAVLFLFS--AIIRVPA-GILADRAGRNVTALLGMVVTGLG- 269
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISG 148
L LFL ++ G GN + A FA +D ENR G + G +G
Sbjct: 270 LFSAFKPDFPFLFLASLLCG--AGNGIVNTAVFAAASDYENRGYAMGVANTVLNAGIFAG 327
Query: 149 PTVGGLLAHF 158
T+ G +A F
Sbjct: 328 TTLAGFMAGF 337
emb|CAB12667| (Z99108) similar to multidrug resistance protein [Bacillus
subtilis] >gi|2804523|dbj|BAA24459| (D85082) YfiS
[Bacillus subtilis]
Length = 417
Score = 57.0 bits (135), Expect = 3e-07
Identities = 90/366 (24%), Positives = 143/366 (38%), Gaps = 28/366 (7%)
Query: 40 HDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM 99
H L ++ LM +AL P G L+DRF RK I+ +S G AL + LW
Sbjct: 42 HASPLDMSLLMMSFALPVIVLGPVSGLLADRFDRKTIMFLSEIGRALTVISCVYVSELWQ 101
Query: 100 LFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLAH 157
L++ + + ++ E + + ++ I GP +GG L+A
Sbjct: 102 LYVLLSVQSCFSSLFLPAKNGKLKELAPEAHIQQAVSVSSIIDNSSKIFGPALGGTLIAA 161
Query: 158 FGNSVPFYF--GALISIANLLY----GAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLR 211
F FY GA A +L+ AF+ + P+ S+K+ F + LL
Sbjct: 162 FSIHSVFYINAGAFFLSAVILFFLPRDAFLQKANTPQEKTAALTSIKEGLQFLKRMPLL- 220
Query: 212 MKNLNRLLFAGILLW-LPNGALQAIISQFSLDSFAWT-PVLIGLAISIMGLMDILTQIF- 268
L LL A ++L+ L G QAII + SF+ P L G +++ G +LT
Sbjct: 221 ---LTGLLTACVVLFVLQIGDSQAII---LIRSFSGAPPELAGWCMAVSGAGMLLTAAIT 274
Query: 269 ----IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
I LL + L+ LA F FI A FI +
Sbjct: 275 GRRRITSYLLYFSAGTLLLGLA-----TGGAPFLSGMGIAGITLFIFAFFIMGAAFGLVH 329
Query: 325 TAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG-HFAPALMGFIFLI 383
F + + G++ G Q+ L ++G GG + +G A + G + ++
Sbjct: 330 IPFQILVQTTVPVDYSGRVFGAIQSATTLASILGMAGGGVLAEWIGVSLAFLVCGCLLIM 389
Query: 384 IALLVL 389
I L+ L
Sbjct: 390 IGLITL 395
ref|NP_009852.1|YBR293W| Probable multidrug resistance protein; Ybr293wp
>gi|586361|sp|P38358|YB8G_YEAST HYPOTHETICAL 51.7 KD
PROTEIN IN CTP1-SUL2 INTERGENIC REGION
>gi|626840|pir||S46175 probable resistance protein
YBR293w - yeast (Saccharomyces cerevisiae)
>gi|536750|emb|CAA85258| (Z36162) ORF YBR293w
[Saccharomyces cerevisiae]
Length = 474
Score = 57.0 bits (135), Expect = 3e-07
Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 9/209 (4%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
Y + + P GS SD GR+ L + +G L G + +++ML R + G+ GG
Sbjct: 11 YLITSTSFQPLYGSFSDALGRRNCLFFANGAFTIGCLACGFSKNIYMLSFMRALTGIGGG 70
Query: 113 NIVTLFAYF-ADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALIS 171
++TL +D+ R + +G G I G + GG +A +S+ + + LI
Sbjct: 71 GLITLSTIVNSDVIPSSKRGIFQAFQNLLLGFGAICGASFGGTIA---SSIGWRWCFLIQ 127
Query: 172 IANLLYGAFVMNESLP--ETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPN 229
+ + + +MN +P + + +N S+ Q NP L + M ++ L+ G+ L L
Sbjct: 128 VPISVISSILMNYYVPNQKEYNRQNSSIFQ-NPGKILRDIDVMGSI--LIITGLTLQLLY 184
Query: 230 GALQAIISQFSLDSFAWTPVLIGLAISIM 258
+L S+ S S + +L+G I ++
Sbjct: 185 LSLGCSTSKLSWTSPSVLLLLVGSVIILL 213
gb|AAD25166.1|AF030397_4 (AF030397) putative 4-chlorobenzoate transporter [Arthrobacter sp.
SU]
Length = 444
Score = 56.6 bits (134), Expect = 4e-07
Identities = 64/280 (22%), Positives = 113/280 (39%), Gaps = 34/280 (12%)
Query: 64 LGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL-TGGNIVTLFAYFA 122
L SD+ GR+ ++L++L + G + AG + L R++ GL GG I L + +
Sbjct: 73 LTPFSDKIGRRRMMLVALVLVSAGMTLSVFAGDVVQLMAYRVLAGLGIGGMIANLNVFVS 132
Query: 123 DITDEENRTKVFGWTAAAVGVG-TISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFV 181
+ + ++ R + G + +G T+ G G L+ FG F GA SI L
Sbjct: 133 EYSSDKRRGSILGLYTSGFAIGATLGGFIAGPLIPQFGWRSVFVVGAAASILMLAVTWRF 192
Query: 182 MNESLP-------------------ETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAG 222
+ ESL + HR +L +L Q+ + ++ R+
Sbjct: 193 LPESLDYLISKRPRNALTQVNAILVQMHRPALSALPELPQDQQIGRGIKDLLTGRMAAQT 252
Query: 223 ILLWLPNGALQAIISQFSLDSFAWTPVLI---------GLAISIMGLMDILTQIFIMPRL 273
+LLW+ G + IS + + WTP LI G+ + ++ + FI L
Sbjct: 253 VLLWVGYGLM---ISAYYF-ATTWTPKLIATSSGDDSLGVTMGLLVNFGGIIGCFIFSIL 308
Query: 274 LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAM 313
L+ +L+ + Y+ F ++ FI A+
Sbjct: 309 AVFLRSRHLLLGSLLISALIYVSFGMTFTQTSLAIFIGAV 348
gi|3372360 (AF042490) 4-chlorobenzoate transport protein [Arthrobacter sp.
TM1]
Length = 444
Score = 56.2 bits (133), Expect = 5e-07
Identities = 64/280 (22%), Positives = 113/280 (39%), Gaps = 34/280 (12%)
Query: 64 LGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL-TGGNIVTLFAYFA 122
L SD+ GR+ ++L++L + G + AG + L R++ GL GG I L + +
Sbjct: 73 LTPFSDKIGRRRMMLVALVLVSAGMTLSVFAGDVVQLMAYRVLAGLGIGGMIANLNVFVS 132
Query: 123 DITDEENRTKVFGWTAAAVGVG-TISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFV 181
+ + ++ R + G + +G T+ G G L+ FG F GA SI L
Sbjct: 133 EYSSDKRRGSILGLYTSGFAIGATLGGFIAGPLIPQFGWRSVFAVGAAASILMLAVTWRF 192
Query: 182 MNESLP-------------------ETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAG 222
+ ESL + HR +L +L Q+ + ++ R+
Sbjct: 193 LPESLDYLISKRPRNALTQVNAILVQMHRPALSALPELPQDQQIGRGIKDLLTGRMAAQT 252
Query: 223 ILLWLPNGALQAIISQFSLDSFAWTPVLI---------GLAISIMGLMDILTQIFIMPRL 273
+LLW+ G + IS + + WTP LI G+ + ++ + FI L
Sbjct: 253 VLLWVGYGLM---ISAYYF-ATTWTPKLIATSSGDDSLGVTMGLIVNFGGIIGCFIFSIL 308
Query: 274 LKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAM 313
L+ +L+ + Y+ F ++ FI A+
Sbjct: 309 AVFLRSRHLLLGSLLISALIYVAFGMTFTQTSLAIFIGAV 348
gi|2648517 (AE000963) sugar transporter, putative [Archaeoglobus fulgidus]
Length = 401
Score = 56.2 bits (133), Expect = 5e-07
Identities = 88/361 (24%), Positives = 149/361 (40%), Gaps = 53/361 (14%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT 110
A Y C F A G + DRFGRK L++S+ A+ ++ A + W L + R+I G+
Sbjct: 54 AQYIFC-IFGAMLFGEMGDRFGRKNALILSILWVAVFSVLSAFAPNFWTLAILRLISGM- 111
Query: 111 GGNIVTLFAYFADITDEENR---------TKVFGWTAAAVGVGTISGPTVGGLLAHFGNS 161
G F Y ++ + R T VFG+ +A+ V I P G F
Sbjct: 112 GVTWGLAFTYMSEFYSPKRRGLFGGLIHATFVFGFILSALSVSLIY-PIYGWRACFFVTL 170
Query: 162 VPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLL-F 220
P F +L+ ++ + E H +++ +L +++R RLL
Sbjct: 171 YPIPF-------LILFAKYLPESRIWEKHSA------EMDKSLRLAEIVRESRYLRLLVL 217
Query: 221 AGILLWLPNGALQAIIS---QFSLDSFAWTP---VLIGLAISIMGLMDILTQIFIMPRLL 274
A L WL A AI+ F + F + P +I L IS++ L+ + I +
Sbjct: 218 ATFLFWLAEFAYHAIVDWSPTFIIRQFNYRPEEASMIVLRISLVALIVLPFFGLISDYIG 277
Query: 275 KLANEDKLIRLALV-CEIIAYLLFALSAFSKMWPFFILAMFIFAFGD-SIFGT----AFN 328
+ ++ + L+ C ++AY F L ++ L + FG ++FG F
Sbjct: 278 RRSSFAISASIGLLGCLMLAY--FTLVNYNPGLALLSLFVIPIGFGSHALFGVWSSEMFP 335
Query: 329 GKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLV 388
K+ +ATS + ++ R G +GG I + F+ L G + IA L+
Sbjct: 336 TKVRATATS-----------VIFSIAR--GLSVGGLIVGYVATFSSLLYGMLLGGIAFLL 382
Query: 389 L 389
+
Sbjct: 383 M 383
sp|Q10072|YAN6_SCHPO HYPOTHETICAL 63.5 KD PROTEIN C3H1.06C IN CHROMOSOME I
>gi|1103507|emb|CAA92259.1| (Z68144) MFS transporter
[Schizosaccharomyces pombe]
Length = 589
Score = 56.2 bits (133), Expect = 5e-07
Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 28 VVP-FMVAPFANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDR 70
V+P M++ F +A DQ +I T++ I Y L P G +S+
Sbjct: 92 VIPGLMLSIFLSALDQTVITTAIPTIVANLDGGSSYSWIGTAYTLAQTSILPFCGIMSEV 151
Query: 71 FGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFA-YFADITDEEN 129
GRK +L S+ G + G A ++ L L R + G+ GG I +L ADIT +
Sbjct: 152 VGRKIVLYTSIVLFLFGSAMCGAAQNMLWLVLCRAVQGIGGGGITSLVTIVIADITPLQT 211
Query: 130 RTKVFGWTAAAVGVGTISGPTVGGLLA 156
R G G+ ++ GP +GG ++
Sbjct: 212 RPYYTGCMGVTWGLASVMGPLIGGAIS 238
dbj|BAA29758| (AP000003) 413aa long hypothetical protein [Pyrococcus horikoshii]
Length = 413
Score = 55.8 bits (132), Expect = 6e-07
Identities = 75/361 (20%), Positives = 146/361 (39%), Gaps = 25/361 (6%)
Query: 45 IVTSLMAIYALCTFFAAPALGSLSDRFG-RKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
+V L IY L + G LSD+ G RKP +++ + S Y++ + +L
Sbjct: 65 LVGLLSVIYNLTSAIFQYPFGYLSDKIGKRKPFIILGVLFSGTTYVLVIFISTPILLLSL 124
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRT-KVFGWTAAAVGVGTISGPTVGG-LLAHFGNS 161
R G G + A+ A I++ R +FG+ +G + G +GG ++ G
Sbjct: 125 RGTQGALGASFAP--AHSALISELSTRVGSMFGFFNFVENMGFMVGNFLGGYIVKKVGIK 182
Query: 162 VPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQ------LNPFTQLFQLLRMKNL 215
F +++S+ ++L+ V + + +++ + + F++L L
Sbjct: 183 SAFLATSIVSLVSILFLTQVKERERKKKNIGSFLPIREGRESEKVEMKSSAFKMLMKGEL 242
Query: 216 NRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLK 275
+ +L + +G + A + + + F +G + I L L + I RL+
Sbjct: 243 GAFYLSVLLAMIASGEVYATVPVYFQEKFG--EEFVGFLLGIDSLAAALGSLLI-GRLID 299
Query: 276 LANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLS--- 332
E +LA++ I+ ++ +A W I+ M + + + S
Sbjct: 300 KYGEKVFYKLAILGYILTFIGYA-------WATTIIIMALVSLLSGVKWAMITSSASTYV 352
Query: 333 -KSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLSK 391
+ E+G+ G + L VIGPLIGG I + G + LI++ L+ K
Sbjct: 353 ARRVPHRERGQGMGLLNTMMTLGWVIGPLIGGLIADNFGFSVMLYSTTLPLIVSFLLAFK 412
Query: 392 T 392
+
Sbjct: 413 S 413
emb|CAA16868.1| (AL021748) MFS efflux transporter of unknown specificity
[Schizosaccharomyces pombe]
Length = 599
Score = 55.8 bits (132), Expect = 6e-07
Identities = 43/146 (29%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 28 VVPFMVAP-FANAHDQALIVTSLMAI----------------YALCTFFAAPALGSLSDR 70
VVP ++ F A D ++ T+L I Y L + PA+G +
Sbjct: 98 VVPALILTLFLAALDNTIVTTALPTIAEDFNDTSSSSWIGSAYVLASNAVLPAVGVFCNI 157
Query: 71 FGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEEN 129
GRK +L I + LG + G + ++ L + R I GL GG I++L +DIT
Sbjct: 158 LGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISDITPLRT 217
Query: 130 RTKVFGWTAAAVGVGTISGPTVGGLL 155
R G A A G ++GP +GG +
Sbjct: 218 RPMYSGILATAWGAALVAGPIIGGAI 243
gb|AAF10876.1|AE001977_9 (AE001977) major facilitator family protein [Deinococcus
radiodurans]
Length = 458
Score = 55.4 bits (131), Expect = 8e-07
Identities = 65/311 (20%), Positives = 121/311 (38%), Gaps = 21/311 (6%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNI-VTLFAYFAD 123
G+ +DR G KP++L LG+ G A SL L ++ G+ GG +
Sbjct: 120 GAWADRIGPKPLILAGCLIRTLGFGWMGFASSLPELLGASLLAGIGGGLFDAPKSSAITA 179
Query: 124 ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMN 183
+T E+R ++F + A +G ++GP +G L G F +LI+ + + ++
Sbjct: 180 VTPPEHRPRMFSLVSIAGNLGMVTGPLLGAWLIALG----FQRASLIAASAYIVAFVLLA 235
Query: 184 ESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNR--LLFAGILLWLPNGALQAIISQFSL 241
+LP R + F+ L L + L+ G L + + L
Sbjct: 236 VTLPRLKPERT----PADTFSGLKVALHDRAFRNFTLVLGGYFLLSTQLNVAVTLKAVEL 291
Query: 242 DSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALV-CEIIAYLLFALS 300
T L GL+ + + + LL+LA +R+ LV ++ + L
Sbjct: 292 AGQGATAPLYGLSAGL--------SVVLQYPLLRLAERYLRVRVVLVGAVVLVAVALGLM 343
Query: 301 AFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPL 360
++ +P + + +++ G + ++ A G G S L +G
Sbjct: 344 GLAQTFPQLLACVVLYSLGTMLVFPMQQTLTARLAPEGLVGSYFGFSAISLGLGGAVGNF 403
Query: 361 IGGQIYISLGH 371
+GG + + GH
Sbjct: 404 VGGAL-VDAGH 413
dbj|BAA78678.1| (AB019519) VarS [Streptomyces virginiae]
Length = 518
Score = 54.7 bits (129), Expect = 1e-06
Identities = 46/139 (33%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
YAL GSLSDR+GRK L+ L L + S L R G+ G
Sbjct: 64 YALVQSGLLLTAGSLSDRYGRKKALITGLVAFGLCSTAAAFSASSGQLIAARAGMGIGGA 123
Query: 113 NIV-TLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFGNSVPFYFGALI 170
++ T A + D E K G A +G GP VGG LLAHF F LI
Sbjct: 124 LLMTTTLAVIMQVFDGEELPKAIGMWGAVSSLGFAGGPLVGGVLLAHFWWGSIF----LI 179
Query: 171 SIANLLYGAFVMNESLPET 189
+I L G + + +PE+
Sbjct: 180 NIPVALIGGLAVAKLVPES 198
sp|Q00538|MMR_BACSU METHYLENOMYCIN A RESISTANCE PROTEIN (MMR PEPTIDE)
>gi|72834|pir||YTBSMA methylenomycin A resistance
protein - Bacillus subtilis >gi|40215|emb|CAA46908|
(X66121) methylenomycinAresistance protein [Bacillus
subtilis] >gi|2636293|emb|CAB15784| (Z99123)
methylenomycin A resistance protein [Bacillus subtilis]
Length = 466
Score = 54.7 bits (129), Expect = 1e-06
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 10/159 (6%)
Query: 28 VVPFMVAPFANAHDQALI-VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
VV +A N +L VT ++ Y L A G+L+DRFG K I ++ LA +
Sbjct: 35 VVNVAMADMKNTLSMSLSGVTWVVDGYILTFASLLLAGGALADRFGSKTIYILGLAVFVM 94
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIV--TLFAYFADITDEENRTKVFGWTAAAVGVG 144
+ + + ML GR+I G+ + +L A DE R ++FG AA V
Sbjct: 95 ASCLCAASINGQMLIAGRLIQGIGAALFMPSSLSLLAASYLDERARARMFGLWAALVSAA 154
Query: 145 TISGPTVGGLLAHFGN-------SVPFYFGALISIANLL 176
+ GP +GG+L +VP ALIS +L
Sbjct: 155 SALGPFIGGVLVQLAGWQSIFLINVPIGAAALISAYRIL 193
emb|CAA21416.1| (AL031907) putative vesicular acetylcholine transporter
[Schizosaccharomyces pombe]
Length = 448
Score = 54.3 bits (128), Expect = 2e-06
Identities = 38/136 (27%), Positives = 68/136 (49%), Gaps = 8/136 (5%)
Query: 26 SPVVPFMVAPFANAHDQAL--IVTSLMAIYALCTFFAAPALGSLSDRF-GRKPILLISL- 81
+P++PF + + ++++L+A+YA+ A+ +G L+D+F RK +LI L
Sbjct: 35 TPILPFSLVDRVGISPDRVQSVISTLLAVYAVANIAASSPIGFLADKFLTRKVPMLIGLI 94
Query: 82 -AGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAA 139
SA L FG S+ ML + R++ GL+ + T+ A D+ +N G
Sbjct: 95 FLTSATALLTFG--NSVPMLIVARVLQGLSAAVVWTVGLALLVDVVGADNVGSTMGGIFG 152
Query: 140 AVGVGTISGPTVGGLL 155
+ +G I P GG++
Sbjct: 153 FISLGEIIAPVFGGIV 168
gi|2792329 (AF040570) rifamycin efflux protein [Amycolatopsis mediterranei]
Length = 522
Score = 54.3 bits (128), Expect = 2e-06
Identities = 47/139 (33%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 53 YALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
YAL GS SDR+GRK LL L +G L + S L R G+ G
Sbjct: 61 YALVQSGLLLTAGSFSDRYGRKRSLLAGLLLFGVGSLAAAFSLSSGQLIAARAGMGIGGA 120
Query: 113 NI-VTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFGNSVPFYFGALI 170
+ T A + DE+ K G +A G SGP +GG LLAHF F LI
Sbjct: 121 LLTTTTLAVVMQVFDEKELPKAIGLWSAVSSFGYASGPLIGGALLAHFWWGSIF----LI 176
Query: 171 SIANLLYGAFVMNESLPET 189
+I L G + + +PE+
Sbjct: 177 NIPVALLGCVAVAKLVPES 195
dbj|BAA19354| (AB001488) SIMILAR TO YDDS_BACSU. [Bacillus subtilis]
>gi|2632819|emb|CAB12326| (Z99106) similar to metabolite
transport protein [Bacillus subtilis]
Length = 430
Score = 54.3 bits (128), Expect = 2e-06
Identities = 86/368 (23%), Positives = 155/368 (41%), Gaps = 42/368 (11%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPILL--ISLAG-SALGYLIFGLAGSLWMLFLGRIID 107
A++ L + +A +G LS R+GR+ L + G A+G ++ + S+++LF+ +I
Sbjct: 76 ALFTLGSAGSALIVGRLSQRYGRRTGLSAGFMIGGLGAIGVIMAAIINSIFLLFISLLIY 135
Query: 108 GLTGGNIVTLFAYFA--DITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNS--VP 163
G G L A +A D+ + + R T G ++GP++ ++ F S VP
Sbjct: 136 G--AGTATNLQARYAGTDLANHKQRATAVSITMVFTTFGAVAGPSLVNVMGDFALSIGVP 193
Query: 164 FYFGALI--SIANLLYGA--FVMNESLP-ETHRTRNFSLKQLNPFTQLFQLLRMKNLNRL 218
G I + A +L G F+M P RT + ++ L +N +
Sbjct: 194 SLAGPFILAAAAYMLAGVVLFIMLRPDPLVIARTIEAANEEPGDKGHLAATEHTENKKGI 253
Query: 219 LFAGILLWLPNGALQAIISQFSL------DSFAWTPVLIGLAISIMGLMDILTQIFIMPR 272
+ ++ L + AI++ + ++IG I M L ++T + +
Sbjct: 254 IVGATVMVLTQIVMVAIMTMTPVHMRHHGHDLGAVGLVIGFHIGAMYLPSLVTGVLV--- 310
Query: 273 LLKLANEDKLIRLALVCEIIAYLLFA--LSAFSKMWPFFILAMFIFAFG-----DSIFGT 325
D+L R A+ LL A ++AF+ +L + + G I GT
Sbjct: 311 -------DRLGRTAMAISSGTTLLLAGVIAAFAPGESMILLVIALSLLGLGWNFGLISGT 363
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI--FLI 383
A + S ++ + K QG L AL+ G + G I + A +L+G I L+
Sbjct: 364 AL---IVDSTDTATRAKTQGTVDVLIALSGAAGGALSGMIVAGSSYLALSLIGGILSLLL 420
Query: 384 IALLVLSK 391
I ++V S+
Sbjct: 421 IPVVVWSR 428
pir||S43686 monoamine transport protein homolog - Torpedo ocellata
Length = 511
Score = 54.3 bits (128), Expect = 2e-06
Identities = 48/153 (31%), Positives = 66/153 (42%), Gaps = 6/153 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A+ + P G+ DR G LLI L + F S +LF R + G
Sbjct: 110 LFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAFGESYAILFAARSLQG 169
Query: 109 LTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
L T A AD T+E RT+ G A + G++ P GG+L F G VPF
Sbjct: 170 LGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGKWVPF- 228
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLK 198
++S LL G ++ P RTR +L+
Sbjct: 229 --LVLSFVCLLDGILLLMVVTPFASRTRGNTLQ 259
gi|458257 (U05339) vesicular acetylcholine transporter [Torpedo ocellata]
Length = 511
Score = 54.3 bits (128), Expect = 2e-06
Identities = 48/153 (31%), Positives = 66/153 (42%), Gaps = 6/153 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A+ + P G+ DR G LLI L + F S +LF R + G
Sbjct: 110 LFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAFGESYAILFAARSLQG 169
Query: 109 LTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
L T A AD T+E RT+ G A + G++ P GG+L F G VPF
Sbjct: 170 LGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGKWVPF- 228
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLK 198
++S LL G ++ P RTR +L+
Sbjct: 229 --LVLSFVCLLDGILLLMVVTPFASRTRGNTLQ 259
pir||S18539 actVA-1 protein - Streptomyces coelicolor >gi|581609|emb|CAA41637|
(X58833) actVA 1 [Streptomyces coelicolor]
Length = 533
Score = 54.3 bits (128), Expect = 2e-06
Identities = 47/142 (33%), Positives = 64/142 (44%), Gaps = 11/142 (7%)
Query: 39 AHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLW 98
+H Q V S + T F G L DR GR+ +LL+ L L L AGS
Sbjct: 57 SHSQVEWVLSAYTLAFAATLFT---WGVLGDRLGRRRVLLLGLGLFGLSSLAGAYAGSPE 113
Query: 99 MLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLA 156
L R G++G ++ + A A + R K G AA+VG GP GG LLA
Sbjct: 114 QLIAARACMGVSGAAVLPSTLATIAAVFPLRERPKALGIWAASVGFALGIGPVTGGILLA 173
Query: 157 HF--GN----SVPFYFGALISI 172
HF G+ +VP G L+++
Sbjct: 174 HFWWGSVLLVNVPLMAGCLVAV 195
gb|AAF18594.1|AC002354_1 (AC002354) putative tetracycline transporter protein [Arabidopsis
thaliana]
Length = 415
Score = 53.9 bits (127), Expect = 2e-06
Identities = 80/347 (23%), Positives = 129/347 (37%), Gaps = 39/347 (11%)
Query: 57 TFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVT 116
T P +G+LSDR+G K +L + + S L I G + +I T
Sbjct: 64 TMVMMPVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIK--------T 115
Query: 117 LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLL 176
LF D+ + TK GV +ISG + F A+ L+
Sbjct: 116 LF----DMAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLV 171
Query: 177 YGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLF-----------AGILL 225
Y + E L + ++ +K L + +
Sbjct: 172 YMRVFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSS 231
Query: 226 WLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRL 285
W L+A F+ + FA +L+ + SI +Q+FI+P L E K++
Sbjct: 232 WKDMYFLKARFG-FNKNDFAELFLLVTIIGSI-------SQLFILPTLSSTIGERKVLST 283
Query: 286 ALVCEIIAYLLFALSAFSKMW-PFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQ 344
L+ E F + S W P+ AM + G + G S+ SSEQGK+Q
Sbjct: 284 GLLMEF-----FNATCLSVAWSPWVPYAMTMLVPGAMFVMPSVCGIASRQVGSSEQGKVQ 338
Query: 345 GGSQALQALTRVIGPLIGGQI-YISLGHFAPALM-GFIFLIIALLVL 389
G ++A +V+ P + + + L AP GF L IA+ ++
Sbjct: 339 GCISGVRAFAQVVAPFVYSPLTALFLSENAPFYFPGFSILCIAISLM 385
gi|2293179 (AF008220) YttB [Bacillus subtilis] >gi|2635519|emb|CAB15013|
(Z99119) similar to multidrug resistance protein
[Bacillus subtilis]
Length = 397
Score = 53.9 bits (127), Expect = 2e-06
Identities = 75/328 (22%), Positives = 137/328 (40%), Gaps = 20/328 (6%)
Query: 65 GSLSDRFGR-KPILL-ISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFA 122
G L D+ G K I+L I++ ++L L+F +++ L I G G + A
Sbjct: 60 GFLFDKIGGFKSIMLGIAITLASLMGLVFFHDWPAYIVLL--TIVGFGSGVVFPASYAMA 117
Query: 123 DITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIAN--LLYGAF 180
E K F A G G +GG++A F S F A++ + ++Y F
Sbjct: 118 GSVWPEGGRKAFNAIYVAQNAGVAVGSALGGVVASFSFSYVFLANAVLYLIFFFIVYFGF 177
Query: 181 VMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILL-WLPNGALQAIISQF 239
N + +T +N + L+ +L G +L WL I+ +
Sbjct: 178 -RNIQTGDASQTSVLDYDAVNSKAKFAALI-------ILSGGYVLGWLAYSQWSTTIASY 229
Query: 240 SLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLL-FA 298
+ S + L + ++ G++ +L Q + + K A ++ +V I +++ F+
Sbjct: 230 T-QSIGISLSLYSVLWTVNGILIVLGQPLVSFVVKKWAES---LKAQMVIGFIIFIVSFS 285
Query: 299 LSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIG 358
+ +K +P F+ AM I G+ + A ++ A ++G QG + R+IG
Sbjct: 286 MLLTAKQFPMFLAAMVILTIGEMLVWPAVPTIANQLAPKGKEGFYQGFVNSAATGGRMIG 345
Query: 359 PLIGGQIYISLGHFAPALMGFIFLIIAL 386
PL GG + G A L + L+I++
Sbjct: 346 PLFGGVLVDHYGIRALVLSLLVLLLISI 373
gi|2072793 (U70046) No definition line found [Pseudomonas aeruginosa]
Length = 132
Score = 53.9 bits (127), Expect = 2e-06
Identities = 31/108 (28%), Positives = 53/108 (48%), Gaps = 7/108 (6%)
Query: 31 FMVAPFANAHDQAL------IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
FMV P + Q L ++ + Y+L G++SDR GR+P++++ L
Sbjct: 24 FMVLPVLATYGQDLAGATPALIGLAIGAYSLTQAILQIPFGTISDRIGRRPVIVVGLLIF 83
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTK 132
G + A S+W + GR++ G G + A +D+T E++RTK
Sbjct: 84 TAGAALAASADSIWGVIAGRVLQG-AGAISAAVMALLSDLTREQHRTK 130
gb|AAD50292.1|AF172824_1 (AF172824) vesicular acetylcholine transporter [Torpedo
californica]
Length = 515
Score = 53.5 bits (126), Expect = 3e-06
Identities = 48/153 (31%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A+ + P G+ DR G LLI L + F S +LF R + G
Sbjct: 114 LFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAFGESYAVLFAARSLQG 173
Query: 109 LTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
L T A AD T+E RT+ G A + G++ P GG+L F G VPF
Sbjct: 174 LGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGKWVPF- 232
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLK 198
++S LL G ++ P RTR L+
Sbjct: 233 --LVLSFVCLLDGILLLMVVTPFASRTRENMLQ 263
pir||S47094 hypothetical protein - rabbit >gi|498983|emb|CAA84040| (Z34286) ORF
might extend further in 5'-direction [Oryctolagus
cuniculus]
Length = 293
Score = 53.5 bits (126), Expect = 3e-06
Identities = 65/258 (25%), Positives = 107/258 (41%), Gaps = 16/258 (6%)
Query: 139 AAVGVGTISGPTVGG-LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSL 197
A +GV + +GG L G + PF+ + IA LY AF E+L E R F+L
Sbjct: 6 ACIGVAGMLASLLGGHWLRAQGYTNPFWLALALLIAMALYAAFCFGETLKEPEPARLFTL 65
Query: 198 KQLNPFTQLF-----QLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDS-FAWTPVLI 251
+ QL+ Q R + L ++L + GA Q I++ + L S W LI
Sbjct: 66 RHHRSIIQLYAVPSPQKSRKQLALYSLSIFVVLAVHFGA-QDILTLYELSSPLCWDSRLI 124
Query: 252 GLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFIL 311
G S + LT + + L + + + L I+ ++FA + + + +
Sbjct: 125 GYG-SAAQQLPYLTSLLGLRLLQCCLTDSWVAEIGLAFNIVGMVVFAFATVTPL----MF 179
Query: 312 AMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGH 371
+ F + KLS+ + SEQG L + L + I +Y + +
Sbjct: 180 TGYGLLFLSLVITPIIRAKLSRLVSESEQGALFSAVACVNNLAMLTASGIFNSLYPATLN 239
Query: 372 FAPALMGFIFLIIALLVL 389
F + GF FL+ A L+L
Sbjct: 240 F---MKGFPFLLGAGLLL 254
gb|AAD32274.1| (U67949) contains similarity t to sugar and other transporters
(Pfam: sugar_tr.hmm. score: 13.46) [Caenorhabditis
elegans]
Length = 626
Score = 53.1 bits (125), Expect = 4e-06
Identities = 74/367 (20%), Positives = 144/367 (39%), Gaps = 41/367 (11%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSL-------WMLF 101
+ I+ F +P G G + + ++ +A + + ++FG L W
Sbjct: 265 VFGIFEFTMFIISPLFGKYIIFIGARTMFIVGIAVTGVTAILFGFLNFLPSGNTFFWFSV 324
Query: 102 LGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGN- 160
L RI++ + VT A + +N V G G+G +GP +GG G
Sbjct: 325 LVRILEAVGDAAFVTSSFAIAAKSFPKNVAFVVGILETFAGLGYTAGPVIGGFFYDIGGF 384
Query: 161 SVPF-YFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ-LFQLLRMKNLNRL 218
+PF G ++ +A++L AF + E+ + + NP + + ++LR+ +
Sbjct: 385 QLPFLVLGIVLLVASVL--AFFLIENTKD---------DESNPEDKGMLEILRLPQIWLP 433
Query: 219 LFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIM-GLMDILTQIF--IMPRLLK 275
+F+ + + L +S L+SF TP IGL + G ++ +F IM R
Sbjct: 434 IFSVVSCAISLSFLDPTLSN-HLESFKLTPTEIGLMFLLCGGFYTVMCPVFGAIMDR--- 489
Query: 276 LANEDKLIRLALVCEIIAYLLFALSAF------SKMWPFFILAMFIFAFGDSIFGTAFNG 329
L N + L+ + +++ + +W I + +++ F
Sbjct: 490 LHNGENLLLFGSIATLLSMFFIGPTPLLNGYVEKDLWVIGISLAVLGLAASALYIPCFQM 549
Query: 330 KLSKSATSS------EQGKLQGGSQALQALTRVIGPLIGGQIYISLG-HFAPALMGFIFL 382
L + G + G QA IGP G + +G + ++ F+ +
Sbjct: 550 CLDEVKDKGFDDNFHTYGCVSGIFQAAFGFGSFIGPTFGSVVVERVGFRWTTTMIAFLHI 609
Query: 383 IIALLVL 389
I++ +VL
Sbjct: 610 ILSTVVL 616
gb|AAB81677.1| (AC002354) putative tetracycline transporter protein [Arabidopsis
thaliana]
Length = 418
Score = 53.1 bits (125), Expect = 4e-06
Identities = 83/347 (23%), Positives = 140/347 (39%), Gaps = 40/347 (11%)
Query: 57 TFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVT 116
T P +G+LSDR+G K IL + + S + +I G + ++ I LT
Sbjct: 63 TMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTS----- 117
Query: 117 LFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFYFGALISIANL 175
A R FG A G+ TI+G G L+A F ++ F A+ L
Sbjct: 118 ----MAVNIHGSTRISAFGILA---GIKTIAG-LFGTLVARFLPIALTFQVSAISFFVGL 169
Query: 176 LYGAFVMNESLPET------HRTRNFSLKQLNPFTQLFQ-LLRMKNLNRLLF------AG 222
+Y + E L + H T + T L + +L + + +F
Sbjct: 170 VYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYSSLK 229
Query: 223 ILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKL 282
++ L + ++F D + +L L I+I+G ++Q+F++PR E KL
Sbjct: 230 DMISLMKTRYYFLKARFGFDKKQFADLL--LLITIVGS---ISQLFVLPRFASAIGECKL 284
Query: 283 IRLALVCEIIAYLLFALSAFSKMW-PFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQG 341
+ L E I + ++S W P+ +F G + G S+ EQG
Sbjct: 285 LSTGLFMEFINMAIVSIS-----WAPWVPYLTTVFVPGALFVMPSVCGIASRQVGPGEQG 339
Query: 342 KLQGGSQALQALTRVIGPLIGGQI-YISLGHFAPALM-GFIFLIIAL 386
K+QG +++ +V+ P + + + L AP GF L I+L
Sbjct: 340 KVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISL 386
sp|P37597|YDHC_ECOLI HYPOTHETICAL 43.4 KD PROTEIN IN PURR-CFA INTERGENIC REGION
>gi|1787950 (AE000261) putative transport protein
[Escherichia coli]
Length = 403
Score = 53.1 bits (125), Expect = 4e-06
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 36/240 (15%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPAL-GSLSDRFGRKPILLISLAGSALG 87
+P A A+ A V++ ++++ L F AA L G LSDR+GRKP+LLI L ALG
Sbjct: 26 LPAFAAIQADLQTPASAVSASLSLF-LAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALG 84
Query: 88 YLIFGLAGSLWM-----LFLGRIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAA 139
L G LW+ L + R + + G + A +TD + ++F
Sbjct: 85 SL-----GMLWVENAATLLVLRFVQAV--GVCAAAVIWQALVTDYYPSQKVNRIFAAIMP 137
Query: 140 AVGVGTISGPTVGG-LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLK 198
VG+ P +G LL HF S F L +I +L L T + RN S
Sbjct: 138 LVGLSPALAPLLGSWLLVHF--SWQAIFATLFAITVVLILPIFW---LKPTTKARNNSQD 192
Query: 199 QLNPFTQLFQLLRMKNLNRLLF----AGILLWLPNGALQAIISQFSLDSFAWTPVLIGLA 254
L FT L + + N L++ A WL S F L ++P +IGL+
Sbjct: 193 GLT-FTDLLRSKTYRG-NVLIYAACSASFFAWLTG-------SPFILSEMGYSPAVIGLS 243
dbj|BAA15426| (D90809) Bicyclomycin resistance protein (Sulfonamide resistance
protein). [Escherichia coli] >gi|1742743|dbj|BAA15435|
(D90810) Bicyclomycin resistance protein (Sulfonamide
resistance protein). [Escherichia coli]
Length = 403
Score = 53.1 bits (125), Expect = 4e-06
Identities = 71/240 (29%), Positives = 103/240 (42%), Gaps = 36/240 (15%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPAL-GSLSDRFGRKPILLISLAGSALG 87
+P A A+ A V++ ++++ L F AA L G LSDR+GRKP+LLI L ALG
Sbjct: 26 LPAFAAIQADLQTPASAVSASLSLF-LAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALG 84
Query: 88 YLIFGLAGSLWM-----LFLGRIIDGLTGGNIVTLFAYFADITD---EENRTKVFGWTAA 139
L G LW+ L + R + + G + A +TD + ++F
Sbjct: 85 SL-----GMLWVENAATLLVLRFVQAV--GVCAAAVIWQALVTDYYPSQKVNRIFAAIMP 137
Query: 140 AVGVGTISGPTVGG-LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLK 198
VG+ P +G LL HF S F L +I +L L T + RN S
Sbjct: 138 LVGLSPALAPLLGSWLLVHF--SWQAIFATLFAITVVLILPIFW---LKPTTKARNNSQD 192
Query: 199 QLNPFTQLFQLLRMKNLNRLLF----AGILLWLPNGALQAIISQFSLDSFAWTPVLIGLA 254
L FT L + + N L++ A WL S F L ++P +IGL+
Sbjct: 193 GLT-FTDLLRSKTYRG-NVLIYAACSASFFAWLTG-------SPFILSEMGYSPAVIGLS 243
pir||S43685 monoamine transport protein homolog - marbled electric ray
Length = 511
Score = 53.1 bits (125), Expect = 4e-06
Identities = 47/148 (31%), Positives = 63/148 (41%), Gaps = 6/148 (4%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A+ + P G+ DR G LLI L + F S +LF R + G
Sbjct: 110 LFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAFGESYAILFAARSLQG 169
Query: 109 LTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
L T A AD T+E RT+ G A + G++ P GG+L F G VPF
Sbjct: 170 LGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGKWVPF- 228
Query: 166 FGALISIANLLYGAFVMNESLPETHRTR 193
++S LL G ++ P RTR
Sbjct: 229 --LVLSFVCLLDGILLLMVVTPFASRTR 254
gi|458263 (U05591) vesamicol binding protein [Torpedo marmorata]
Length = 568
Score = 53.1 bits (125), Expect = 4e-06
Identities = 47/148 (31%), Positives = 63/148 (41%), Gaps = 6/148 (4%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A+ + P G+ DR G LLI L + F S +LF R + G
Sbjct: 167 LFASKAILQLLSNPFTGTFIDRVGYDIPLLIGLTIMFFSTITFAFGESYAILFAARSLQG 226
Query: 109 LTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
L T A AD T+E RT+ G A + G++ P GG+L F G VPF
Sbjct: 227 LGSAFADTSGIAMIADKYTEESERTQALGIALAFISFGSLVAPPFGGVLYQFAGKWVPF- 285
Query: 166 FGALISIANLLYGAFVMNESLPETHRTR 193
++S LL G ++ P RTR
Sbjct: 286 --LVLSFVCLLDGILLLMVVTPFASRTR 311
emb|CAB73511.1| (AL139077) putative efflux pump [Campylobacter jejuni]
Length = 394
Score = 52.7 bits (124), Expect = 5e-06
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 2/150 (1%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P++ V + AL ++A + F AP LG ++D+ G I+ +L +
Sbjct: 227 PILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKIIFGALIFCGI 286
Query: 87 GYLIFGLAGSLWMLFLGRIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGT 145
+ + +A +++ L R++ G+ GG + + A +N + +FG+ +G
Sbjct: 287 CFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVIFGFNQTCQFLGN 346
Query: 146 ISGPTVGGLLA-HFGNSVPFYFGALISIAN 174
G GGL+A HF F F LI I N
Sbjct: 347 FCGAFGGGLMASHFSVEFVFTFVCLIFIIN 376
emb|CAB60461.1| (AL132856) putative transmembrane efflux protein. [Streptomyces
coelicolor A3(2)]
Length = 444
Score = 52.7 bits (124), Expect = 5e-06
Identities = 35/117 (29%), Positives = 51/117 (42%), Gaps = 1/117 (0%)
Query: 40 HDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM 99
H V +++ YAL G + D FGR+ + L +LA L G A + +
Sbjct: 70 HTSPASVQWVVSGYALAFALTLVTAGRIGDAFGRRRVFLAALAAFVLCSAAAGAAPGIEL 129
Query: 100 LFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLL 155
L R+ G+ G+I A + R + FG A VGV + GP VGGL+
Sbjct: 130 LVAARLAQGVAAGSIAPQNSALIQQLFRGAERGRAFGLFGATVGVSSAVGPVVGGLI 186
dbj|BAA19345| (AB001488) PROBABLE METABOLITE TRANSPORT PROTEIN, SIMILAR PRODUCT
IN E. COLI. [Bacillus subtilis]
>gi|2632809|emb|CAB12316| (Z99106) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 436
Score = 52.7 bits (124), Expect = 5e-06
Identities = 80/367 (21%), Positives = 153/367 (40%), Gaps = 48/367 (13%)
Query: 51 AIYALCTFFAAPALGSLSDRFGRKPIL----LISLAGSALGYLIFGLAGSLWMLFLGRII 106
A++ + AA +G+ S RFGR+ L LI G A+G +I L S+ +LF+ +I
Sbjct: 76 ALFTFGSAVAALLIGASSQRFGRRAGLAGGFLIGGLG-AIGVIIAALINSVALLFVSLLI 134
Query: 107 DGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSV---- 162
G + + + D+ +E+ R + +G + GP + + F +S+
Sbjct: 135 YGAGMASNLQVRYAGTDLANEKQRATAASMALVSTTLGAVVGPNLVNTMGEFADSIGVPN 194
Query: 163 ---PFYF-GALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNR- 217
PF GA IA ++ F+ + L + N K + Q+ L+ +++
Sbjct: 195 LAGPFIMSGAAFIIAGIILLIFLRPDPLFVSTAIANAEKK--DDKVQIGGSLKNPAIDKK 252
Query: 218 -LLFAGILLWLPNGALQAIISQFSL------DSFAWTPVLIGLAISIMGLMDILTQIFIM 270
++ +++ L + AI++ + + ++IGL I+ M L LT + +
Sbjct: 253 GIMVGAVIMILAQLIMTAIMTMTPVHMGHHGHGLSEVGLVIGLHIAAMYLPSPLTGLLVD 312
Query: 271 P---RLLKLANEDKLIRLALVCEI-----IAYLLFALSAFSKMWPFFILAMFIFAFGDSI 322
+ +A+ L+ LV I ++ L+ AL W F +L
Sbjct: 313 KFGRTTMAIASGATLLAAGLVAAIAPADSLSLLILALVLLGVGWNFGLLT---------- 362
Query: 323 FGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFL 382
GTA + S S + K QG L AL+ G + G + + H + ++
Sbjct: 363 -GTAL---IIDSTHPSLRAKTQGTFDVLLALSGAAGGALSGMV---VAHSSYTILSISGA 415
Query: 383 IIALLVL 389
+++LL++
Sbjct: 416 VLSLLLI 422
emb|CAB61606.1| (AL133210) putative export protein [Streptomyces coelicolor A3(2)]
Length = 496
Score = 52.3 bits (123), Expect = 7e-06
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAI-YALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
VV + A A D L ++ Y L F P RFG + + + +L G L
Sbjct: 41 VVSVALDDLAKAFDAPLATVQWVSTGYLLAVFVTIPLAVWAQARFGGRRLWIAALGGFLL 100
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFA-YFADITDEENRTKVFGWTAAAVGVGT 145
G ++ LA + L + R++ GL GG ++ L A + +V +G
Sbjct: 101 GSVLSALAWNATSLIVFRVVQGLAGGIMMPLMATLLMQAARGSHPGRVMAIITVPTALGP 160
Query: 146 ISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPE 188
I GP +GGL+ H + +F ++I + G ++ +LP+
Sbjct: 161 ILGPVLGGLVLHLADWRWMFF---VNIPFCVVGGWLALRNLPD 200
emb|CAB02373| (Z80226) hypothetical protein Rv0783c [Mycobacterium tuberculosis]
Length = 540
Score = 52.3 bits (123), Expect = 7e-06
Identities = 41/149 (27%), Positives = 66/149 (43%), Gaps = 10/149 (6%)
Query: 45 IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGR 104
+V M Y L P G +DRFG + + + S+ LG L+ +A ++ +L + R
Sbjct: 79 VVAWTMTGYMLALATVIPTAGWAADRFGTRRLFMGSVLAFTLGSLLCAVAPNILLLIIFR 138
Query: 105 IIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGV----GTISGPTVGG-LLAHF 158
++ G GG + + FA A E K G A VG+ G + GP +GG L+ +
Sbjct: 139 VVQGFGGGMLTPVSFAILA----REAGPKRLGRVMAVVGIPMLLGPVGGPILGGWLIGAY 194
Query: 159 GNSVPFYFGALISIANLLYGAFVMNESLP 187
G F + ++ L+ A V P
Sbjct: 195 GWRWIFLVNLPVGLSALVLAAIVFPRDRP 223
dbj|BAA14386| (D90381) Tc resistance protein [synthetic construct]
Length = 458
Score = 51.9 bits (122), Expect = 9e-06
Identities = 41/147 (27%), Positives = 68/147 (45%), Gaps = 6/147 (4%)
Query: 55 LCTFFAAPAL-GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLW-MLFLGRIIDGLTGG 112
+ TF A+ G LSD+ G K +LL + + G +I + S + +L + R I G
Sbjct: 59 MLTFSIGTAVYGKLSDQLGIKRLLLFGIIINCFGSVIGFVGHSFFSLLIMARFIQGAGAA 118
Query: 113 NIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALIS 171
L A +ENR K FG + V +G GP +GG++AH+ + + + LI
Sbjct: 119 AFPALVMVVVARYIPKENRGKAFGLIGSIVAMGEGVGPAIGGMIAHY---IHWSYLLLIP 175
Query: 172 IANLLYGAFVMNESLPETHRTRNFSLK 198
+ ++ F+M E +F +K
Sbjct: 176 MITIITVPFLMKLLKKEVRIKGHFDIK 202
dbj|BAA11739| (D83026) hypothetical [Bacillus subtilis] >gi|2636399|emb|CAB15890|
(Z99123) similar to multidrug-efflux transporter
[Bacillus subtilis]
Length = 400
Score = 51.9 bits (122), Expect = 9e-06
Identities = 71/338 (21%), Positives = 130/338 (38%), Gaps = 38/338 (11%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFG--RKPILLISLAGSALGYLIFGLAGSLWMLFLGRII 106
++ Y + LG LSD RK +L+ S L L+F + S + + R+
Sbjct: 57 ILGSYGVTQILLRFPLGLLSDILFSLRKQLLIAGFGFSVLSSLLFLMFDSFFFVLAARLF 116
Query: 107 DGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA-HFGNSVPFY 165
G+T V +A + N +K G + + GL A H G VPF+
Sbjct: 117 AGITASTWVMATILYAHYFNNGNASKAMGIMQFFTVMPQFASIVFCGLAAAHLGRQVPFW 176
Query: 166 FGALISIANLLYGAFVMNESLPE----THRTRNFSLKQLN-PFTQLFQLLRMKNLNRLLF 220
S A L+ F+ + S P T R + L P +LF +L M + +LF
Sbjct: 177 MALAASAAGLVICCFIQDPSAPPANRGTIRVNQYIKDTLRLPKLKLFTILSM-TAHAVLF 235
Query: 221 AGILLWLPNGALQAIISQFSLDSFAWTPVLIG-LAISIMGLMDILTQIFIMPRLLKLANE 279
+ F +TP+ + L + L+ +++ F +P +
Sbjct: 236 ITV--------------------FGFTPLYMNQLGMGDAELLWVMS-AFFLPHAAATLSF 274
Query: 280 DKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFN-------GKLS 332
L + + + + FA++ ++ F+ A+F + G A +
Sbjct: 275 VFLRFTSRIAYSVMLISFAVTGVCLLYVPFLAALFTVCITHACIGLALGFVFPLLLSHVV 334
Query: 333 KSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG 370
+ +++ + + G Q+ AL +GPL+ G+I +G
Sbjct: 335 EISSARLKMSVMGFYQSFYALGIFLGPLLAGKIAQLIG 372
gb|AAF11851.1|AE002062_4 (AE002062) multidrug-efflux transporter, putative [Deinococcus
radiodurans]
Length = 410
Score = 51.5 bits (121), Expect = 1e-05
Identities = 74/263 (28%), Positives = 106/263 (40%), Gaps = 49/263 (18%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
L+ TS + + A+ T FA G++ + GRK + LI L AL GL+GS+ L +
Sbjct: 68 LLFTSYLGVMAVMTLFA----GNIGAKLGRKRVALIGLGLIALFAAACGLSGSIPALAVF 123
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP 163
R GL G + T A + + K AA+G+G GP +GG+L P
Sbjct: 124 RGGWGL-GSALFTPTALVLLLALIGHAEKAIMRYEAAIGLGMSMGPLLGGVLGSHSWRFP 182
Query: 164 FYFGA-LISIANLLYGAFVMNESLPETHR---------TR-------------NFSLKQL 200
F+ A L+ +A AFV E R TR F L
Sbjct: 183 FFGAATLMLLALASVAAFVKVPESKEPPRPIGDVFRAYTRPAFLAVGLTGLLYYFGFFLL 242
Query: 201 NPFTQLFQLLRMKNLNRLLFA-GILLWLPN------------------GALQAIISQFSL 241
+T LF L NL + F GILL L + GAL + F+L
Sbjct: 243 LGYTPLFLHLSTLNLGLMFFGWGILLGLGSTKLAEVLLRRVKASNVVMGALAGLTIIFAL 302
Query: 242 DSFAWTPVLIGLAISIMGLMDIL 264
FA P +G+ + ++ L +L
Sbjct: 303 LGFA--PFAVGVKVGLVVLSGVL 323
sp|P37498|YYBF_BACSU HYPOTHETICAL 44.2 KD PROTEIN IN COTF-TETB INTERGENIC REGION
>gi|2127000|pir||S65991 hypothetical protein - Bacillus
subtilis >gi|467351|dbj|BAA05197| (D26185) unknown
[Bacillus subtilis] >gi|2636613|emb|CAB16103| (Z99124)
similar to antibiotic resistance protein [Bacillus
subtilis]
Length = 404
Score = 51.2 bits (120), Expect = 2e-05
Identities = 72/292 (24%), Positives = 122/292 (41%), Gaps = 21/292 (7%)
Query: 31 FMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLI 90
F V P A +L VT+++ ++ F GSLS+ +GRKPI+ IS+ +++ L
Sbjct: 43 FHVTP--TAASLSLSVTTMLLAVSMLVF------GSLSEVWGRKPIMGISMLAASVLCLA 94
Query: 91 FGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGP 149
+ S L + R I G+ + ++ AY + + + G + +G + G
Sbjct: 95 SAFSPSFHTLLVLRTIQGVALAGLPSIAMAYLGEEIEPGSLGSAMGLYISGNAIGAVFGR 154
Query: 150 TVGGLLAHFGN--SVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLF 207
V GLL+ + N G + IA++++ F+ +LP + LK L
Sbjct: 155 IVSGLLSEYLNWHMAMGTIGVISLIASVIF--FI---NLPPSRHFTPRKLKLGKLGMSLI 209
Query: 208 QLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQI 267
LR + L L G LL N AL I L P + A S + ++ I
Sbjct: 210 GHLRDRKLFSLFLIGFLLLGSNVALFNYIVYVLLG----PPYSLNKAFSSWIFIVMIVGI 265
Query: 268 FIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFG 319
F + ++ + ++ LV I + AL + M IL + +F FG
Sbjct: 266 FSSSFIGRMVDRYGYPKI-LVMNIFIVIAGALFTINNMLAVKILGIALFTFG 316
emb|CAA40706| (X57470) p43 [Escherichia coli]
Length = 416
Score = 50.8 bits (119), Expect = 2e-05
Identities = 74/339 (21%), Positives = 133/339 (38%), Gaps = 30/339 (8%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAG-----SLWMLFLGRIIDGLTGG-NIVTLF 118
G L+DR+ RK ++L++ +G++ L SL ++L + DG + + L
Sbjct: 73 GVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWDGFSASLGVTALL 132
Query: 119 AYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYG 178
A + EN + T V +G++ P +GGLL G V + +G + +
Sbjct: 133 AATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATG-GVAWNYGLAAAGTFITLL 191
Query: 179 AFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQ 238
+ +LP + R LK L LL + + G LL + + ++
Sbjct: 192 PLLSLPALPPPPQPREHPLKSL--LAGFRFLLASPLVGGIALLGGLLTMASAV--RVLYP 247
Query: 239 FSLDSFAWTPVLIGL---AISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYL 295
D++ + IG AI + + LT KLA+ + L L+ + ++L
Sbjct: 248 ALADNWQMSAAQIGFLYAAIPLGAAIGALTS-------GKLAHSARPGLLMLLSTLGSFL 300
Query: 296 LFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTR 355
L MW ++ + +F + ++ L + G++ G L
Sbjct: 301 AIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRING----LWTAQN 356
Query: 356 VIGPLIGGQIYISLGHF-----APALMGFIFLIIALLVL 389
V G IG + LG + + GF LII +L+L
Sbjct: 357 VTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL 395
sp|P39386|YJIO_ECOLI HYPOTHETICAL 44.7 KD PROTEIN IN IADA-MCRD INTERGENIC REGION (F410)
>gi|1361103|pir||S56562 hypothetical protein f410 -
Escherichia coli >gi|537178 (U14003) ORF_f410
[Escherichia coli] >gi|1790794 (AE000504) putative
transport protein [Escherichia coli]
Length = 410
Score = 50.8 bits (119), Expect = 2e-05
Identities = 74/305 (24%), Positives = 127/305 (41%), Gaps = 55/305 (18%)
Query: 64 LGSLSDRFGRKPILLISLAGSALGYLIFGLA-------GSLWMLFLGRIIDGLTGGNIVT 116
LG LSDR GR+P+L+ G LIF LA S+ + R I G + I T
Sbjct: 68 LGPLSDRIGRRPVLI-------TGALIFTLACAATMFTTSMTQFLIARAIQGTSICFIAT 120
Query: 117 L-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANL 175
+ + + + K+ + V + I GP G L HF + + A+I++
Sbjct: 121 VGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAALMHFMHWKVLF--AIIAVMGF 178
Query: 176 LYGAFV-MNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNL--NRLLFAGI----LLWLP 228
+ +FV + ++PET + + PF+ L +N+ NRL G L ++P
Sbjct: 179 I--SFVGLLLAMPETVK------RGAVPFSAKSVLRDFRNVFCNRLFLFGAATISLSYIP 230
Query: 229 NGALQAIISQFSLDS-------FAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDK 281
+ A+ +D+ FAWT V + A+ + I+ R +K E +
Sbjct: 231 MMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANA--------IVARFVKDPTEPR 282
Query: 282 LIRLALVCEIIAYLLFALSAF--SKMWPFFILAMFIFAFGDSIF------GTAFNGKLSK 333
I A+ +++ L + +W + +L ++AFG + T F+ KL K
Sbjct: 283 FIWRAVPIQLVGLSLLIVGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNKLPK 342
Query: 334 SATSS 338
S+
Sbjct: 343 GTVSA 347
dbj|BAA10613| (D64004) hypothetical protein [Synechocystis sp.]
Length = 418
Score = 50.4 bits (118), Expect = 3e-05
Identities = 39/135 (28%), Positives = 60/135 (43%), Gaps = 6/135 (4%)
Query: 26 SPVVPFMVAPF-ANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
+P++P + F +A + IV + M YAL F G LSDRFGR P++ IS+
Sbjct: 48 APLIPRLAEIFDVSAQEIGFIVPAYMLAYALAALF----YGILSDRFGRWPVIQISIIVF 103
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGV 143
+ A + + R++ GL ++ L FA D+ R G AA+
Sbjct: 104 ITCTALTATAQTAAQMTFWRLLTGLGASGVIPLTFALIGDMFPYNQRGAKLGLVFAAMEG 163
Query: 144 GTISGPTVGGLLAHF 158
G +G G +L F
Sbjct: 164 GMAAGSAGGAILEPF 178
emb|CAA23882| (V00611) coding sequence [Escherichia coli]
Length = 157
Score = 50.4 bits (118), Expect = 3e-05
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 7/134 (5%)
Query: 250 LIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFF 309
++G +++ +GL+ + Q F+ R+ E + L + + A+ A S+ W F
Sbjct: 1 MVGFSLAGLGLLHSVFQAFVAGRIATKWGEKTAVLLEFIADSSAFAFLAF--ISEGWLDF 58
Query: 310 ILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISL 369
+ I G I A G +S S EQG LQG +L T VIGPL+ IY
Sbjct: 59 --PVLILLAGGGIALPALQGVMSIQTKSHEQGALQGLLVSLTNATGVIGPLLFTVIY--- 113
Query: 370 GHFAPALMGFIFLI 383
H P G+I++I
Sbjct: 114 NHSLPIWDGWIWII 127
gi|2625056 (AF030197) vesicular acetylcholine transporter [Drosophila
melanogaster]
Length = 578
Score = 50.0 bits (117), Expect = 4e-05
Identities = 73/340 (21%), Positives = 131/340 (38%), Gaps = 12/340 (3%)
Query: 40 HDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWM 99
H Q L A A+ P G L D+ G ++I L +F S +
Sbjct: 91 HGQDSASGILFASKAIVQLMVNPFSGGLIDKIGYDLPMMIGLTIMFFSTAVFACGSSYSV 150
Query: 100 LFLGRIIDGLTGGNIVTL-FAYFAD-ITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH 157
LF R + G+ T A AD T+E R++ G A + G + P GG L
Sbjct: 151 LFFARSLQGVGSAFADTAGLAMIADRFTEENERSQALGIALAFISFGCLVAPPFGGALYQ 210
Query: 158 F-GNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLN 216
F G VPF AL+ + + L VM + + E + Q+ P +++LL +
Sbjct: 211 FAGKEVPFLILALVCLLDGLMLLLVM-KPVKEAMKQSKDVQDQVIP---IWRLLMDPYIA 266
Query: 217 RLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKL 276
A + + L+ IS + D+ IG+ + + + + I ++ +
Sbjct: 267 VCAGAMTMSNVALAFLEPTISLWMEDNMTTDNWKIGM-VWLPAFFPHVLGVVITVKMARK 325
Query: 277 ANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAF---NGKLSK 333
+ + + A + + F + F + +L + + FG ++ TA G L
Sbjct: 326 YPQHQWLMAAGGLALEGFSCFII-PFCSGYKMLMLPICVICFGIALIDTALLPTLGYLVD 384
Query: 334 SATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFA 373
S G + + ++ +GP+I G + ++G A
Sbjct: 385 VRYVSVYGSIYAIADISYSIAYAVGPIIAGGVVEAIGFTA 424
gb|AAF27726.1|AF156486_5 (AF156486) chloramphenicol transporter CMLA4 [Klebsiella
pneumoniae]
Length = 419
Score = 49.6 bits (116), Expect = 5e-05
Identities = 94/370 (25%), Positives = 146/370 (39%), Gaps = 66/370 (17%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P VPFM A V +A Y + G LSDR GR+P+LL G L
Sbjct: 35 PAVPFMPNALGTT---ASTVQLTLATYLVMIGAGQLLFGPLSDRLGRRPVLL----GGGL 87
Query: 87 GYLI--FGLA-GSLWMLFLGRIIDGLTGGN--IVTLFAYFADI-TDEENRTKVFGWTAAA 140
Y++ GLA SL +FLG I G + +V+ FA DI E ++G +
Sbjct: 88 AYVVASMGLAFTSLAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILGSM 147
Query: 141 VGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESL----PETHRTRNFS 196
+ + GP +G L V + G A L G + + PET R
Sbjct: 148 LAMVPAVGPLLGAL-------VDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRVTG 200
Query: 197 LKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIG---- 252
L+ ++QL LL +K LN WL A + F + F +++G
Sbjct: 201 LQ----WSQL--LLPVKCLN--------FWLYTLCYAAGMGSFFVFFFIAPGLIMGRQGV 246
Query: 253 --LAISIMGLMDILTQIF---IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAF--SKM 305
L S++ + +F M R++ ++R+ + C I +L A++ S+
Sbjct: 247 SQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWASQS 306
Query: 306 WPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVI----GPLI 361
FI M++ G ++ + + + G LQG +T V G L+
Sbjct: 307 VLGFIAPMWLVGIG-----------VATAVSVAPNGALQGFDHVAGTVTAVYFCLGGVLL 355
Query: 362 G--GQIYISL 369
G G + ISL
Sbjct: 356 GSIGTLIISL 365
sp|P24077|YBDA_ECOLI HYPOTHETICAL MEMBRANE PROTEIN P43 >gi|96091|pir||S16306 membrane
protein P43 - Escherichia coli >gi|41435|emb|CAA42044|
(X59402) P43 [Escherichia coli] >gi|1778507 (U82598)
hypothetical membrane protein P43 [Escherichia coli]
>gi|1786806 (AE000164) putative transport [Escherichia
coli]
Length = 416
Score = 49.6 bits (116), Expect = 5e-05
Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 30/339 (8%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAG-----SLWMLFLGRIIDGLTGG-NIVTLF 118
G L+DR+ RK ++L++ +G++ L SL ++L + DG + L
Sbjct: 73 GVLADRYERKKVILLARGTCGIGFIGLCLNALLPEPSLLAIYLLGLWDGFFASLGVTALL 132
Query: 119 AYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYG 178
A + EN + T V +G++ P +GGLL G V + +G + +
Sbjct: 133 AATPALVGRENLMQAGAITMLTVRLGSVISPMIGGLLLATG-GVAWNYGLAAAGTFITLL 191
Query: 179 AFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQ 238
+ +LP + R LK L LL + + G LL + + ++
Sbjct: 192 PLLSLPALPPPPQPREHPLKSL--LAGFRFLLASPLVGGIALLGGLLTMASAV--RVLYP 247
Query: 239 FSLDSFAWTPVLIGL---AISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYL 295
D++ + IG AI + + LT KLA+ + L L+ + ++L
Sbjct: 248 ALADNWQMSAAQIGFLYAAIPLGAAIGALTS-------GKLAHSARPGLLMLLSTLGSFL 300
Query: 296 LFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTR 355
L MW ++ + +F + ++ L + G++ G L
Sbjct: 301 AIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQTPEAMLGRING----LWTAQN 356
Query: 356 VIGPLIGGQIYISLGHF-----APALMGFIFLIIALLVL 389
V G IG + LG + + GF LII +L+L
Sbjct: 357 VTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLL 395
sp|P31474|YIEO_ECOLI HYPOTHETICAL 51.5 KD PROTEIN IN RBSR-RRSC INTERGENIC REGION
>gi|290604 (L10328) similar to drug resistance
translocases [Escherichia coli] >gi|1790195 (AE000452)
putative transport protein [Escherichia coli]
Length = 475
Score = 49.6 bits (116), Expect = 5e-05
Identities = 43/137 (31%), Positives = 62/137 (44%), Gaps = 4/137 (2%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLG 103
L + S + Y L P G L+DRFG + I ++++ LG L L+ SL L +
Sbjct: 46 LAMQSAIISYTLTVAMLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVF 105
Query: 104 RIIDGLTGGNIVTLFAYFADIT--DEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGN- 160
R+I G+ GG ++ A A + V + A VG I GP +GG+L +
Sbjct: 106 RVIQGI-GGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATW 164
Query: 161 SVPFYFGALISIANLLY 177
F I IA LLY
Sbjct: 165 HWIFLINIPIGIAGLLY 181
gb|AAF13274.1|AF199486_1 (AF199486) sugar transporter 4 [Drosophila melanogaster]
Length = 444
Score = 49.2 bits (115), Expect = 6e-05
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 45 IVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGR 104
+V SLM + A F+ +G L + GRK +LI L +G+L+ LA + ML LGR
Sbjct: 51 LVGSLMTLGAA---FSCIPVGVLIGKIGRKTTMLILLPPFFIGWLLILLASHIAMLLLGR 107
Query: 105 IIDGLTGGNI-VTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVP 163
+ G GG VT Y +I + R + + + G + VGG +
Sbjct: 108 FVVGFCGGAFCVTCPMYVTEIAQVQYRGTMGCFFQLLIVFGILYAFVVGGFVK------T 161
Query: 164 FYFGALISIANLLYGAFVMNESLPET 189
FYF +I +++ FV+ +PE+
Sbjct: 162 FYFNIACAILPVIF--FVLMIFMPES 185
emb|CAB49189.1| (AJ248283) hypothetical protein [Pyrococcus abyssi]
Length = 452
Score = 49.2 bits (115), Expect = 6e-05
Identities = 86/394 (21%), Positives = 149/394 (36%), Gaps = 55/394 (13%)
Query: 49 LMAIYALCTFFAAPALGSLSD----RFGR-KPILLISLAGSALGYLIFGLAGSL--WMLF 101
+M I L P LG+LSD R GR KP +L+ +A+ + + +A + LF
Sbjct: 47 IMTIDNLFAVLLLPFLGALSDMTRTRIGRRKPYILLGAPSAAIMFALIPIARAHKNLALF 106
Query: 102 LGRIIDGLTGGNIVTLF-----AYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA 156
+G I+ + LF A+ DIT E R++ G G+G + G +L
Sbjct: 107 MGVIV---LMNFFMALFRSPVIAFMPDITPSEKRSQANGIINFMGGLGALLAYLGGKILY 163
Query: 157 HFGNSVPFYFGALIS-IANLLYGAFVMNESLPETHRT--------RNFSLKQLNPFTQLF 207
+ PFY GA I IAN++ FV PE +R + F+ F +L
Sbjct: 164 DINYAYPFYAGAAIMLIANMIVVLFVPE---PEQYRVPGEGIDIKKIFTETAKKSFGELK 220
Query: 208 QLLR------MKNLNRLLFAGILLWLPNGALQAIISQF----------SLDSFAWTPVLI 251
+ L+ ++L +L A ++ +L+ + + + A T +
Sbjct: 221 ENLKDVFASHERSLLAILLAIFFWFIAFNSLETFFTSYVKYHLYGIPIGAEETAVTRQIE 280
Query: 252 GLAISIMGLMDILTQIFIMPR--LLKLANEDKLIRLALVCEIIAYLL----------FAL 299
IMG++ + IF +P L K I L L+ +I L ++
Sbjct: 281 STGAFIMGIVSLSFMIFAIPAGFLGAKLGRRKTITLGLIIIVIVLGLSYYIGQVQRPSSV 340
Query: 300 SAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGP 359
S + F+L FI G ++ + T + G G ++ P
Sbjct: 341 SLTDPVIVKFMLLFFIAGIGWAMVNVNSLPMVVDMTTEEKVGGYTGLYYFFSQAANLVAP 400
Query: 360 LIGGQIYISLGHFAPALMGFIFLIIALLVLSKTK 393
+ G +G+ +F ++A + + K
Sbjct: 401 PLAGAFLDLIGYETLIPFAIVFFVLATITVQFVK 434
emb|CAB43715.1| (AJ009627) multidrug resistance transporter [Listeria
monocytogenes]
Length = 397
Score = 49.2 bits (115), Expect = 6e-05
Identities = 73/369 (19%), Positives = 143/369 (37%), Gaps = 27/369 (7%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
P++P + +H Q V L Y +G ++ + G K +++I L +
Sbjct: 30 PLLPSIAESIGASHSQ---VEMLFTAYIFTMAIMMIPIGIVAGKMGDKKLIVIGLFIVTI 86
Query: 87 GYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
L+ GL+ ++ L + R G G ++ A I E G A++G+G
Sbjct: 87 FALLCGLSDTIGALSIFRAGWGF-GNSMFMATAMTMLIALSETPGHAIGIYEASMGLGMA 145
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNES---LPETHRTRNFSLKQLNPF 203
GP +GG+L + PF+ A + L F + E P ++K
Sbjct: 146 FGPLLGGILGNISWRYPFFATACLIFIAFLLILFKVKEPKKVAPAPTEKNEVAIK----- 200
Query: 204 TQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDI 263
Q+ L + + ++ F+G+ + + A +S + + IG GL
Sbjct: 201 -QMLHLFKYRPFLQIAFSGMFYYYCFFTILA----YSPLVLGLSAIQIGFVFFAWGLCLA 255
Query: 264 LTQIFIMPRLLKLANEDKLIRLALV-CEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSI 322
L + L N ++++ +L+ C +I LL + + +++ I +++
Sbjct: 256 LGSAKVSHALEIRFNSKQILKGSLLACAVILALLGFIDNTAVDIGLIVISGLILGINNAL 315
Query: 323 FGTAF--NGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFI 380
F T + ++S TS G ++ L PL G + +LG P ++ I
Sbjct: 316 FTTTVMEHSPYARSVTS-------GAYNFVRWLGAAFAPLCSGLLSEALGMKMPFIVASI 368
Query: 381 FLIIALLVL 389
+ + +L
Sbjct: 369 ICLAGMGLL 377
emb|CAB08887| (Z95554) hypothetical protein Rv1634 [Mycobacterium tuberculosis]
Length = 471
Score = 49.2 bits (115), Expect = 6e-05
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
++P +A + A + T +Y + + AA + ++ R G + L+ LA L
Sbjct: 42 LLPSTIADIGGSRLYAWVTT----LYLVGSVVAATTVNTMLLRVGARSSYLMGLAVFGLA 97
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTI 146
L+ A S+ +L GR + G+ GG + L +A + T+ +A GV T+
Sbjct: 98 SLVCAAAPSMQILVAGRTLQGIAGGLLAGLGYALINSTLPKSLWTRGSALVSAMWGVATL 157
Query: 147 SGPTVGGLLAHFG 159
GP GGL A G
Sbjct: 158 IGPATGGLFAQLG 170
sp|P43531|YNFM_ECOLI HYPOTHETICAL 45.3 KD PROTEIN IN MLC-ASR INTERGENIC REGION
>gi|1742630|dbj|BAA15330| (D90802) Bicyclomycin
resistance protein (Sulfonamide resistance protein).
[Escherichia coli] >gi|1787880 (AE000255) putative
transport protein [Escherichia coli]
Length = 417
Score = 49.2 bits (115), Expect = 6e-05
Identities = 83/372 (22%), Positives = 152/372 (40%), Gaps = 31/372 (8%)
Query: 27 PVVPFMVAPF----ANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLA 82
P++P + F AN+ I T+++AI L T G LSD GRKP+++ +L
Sbjct: 57 PILPVLSQEFGLTPANSSISLSISTAMLAIGLLFT-------GPLSDAIGRKPVMVTALL 109
Query: 83 GSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAV 141
+++ L+ + S + + R + GL+ + + Y ++ G +
Sbjct: 110 LASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGN 169
Query: 142 GVGTISGPTVGGLLAHFGNSVPFYFGALISIANL-LYGAFVMNESLPETHRTRNFSLKQL 200
+G +SG + G+ F N + AL +I L A + + LPE+ R SL+
Sbjct: 170 SIGGMSGRLISGVFTDFFN----WRIALAAIGCFALASALMFWKILPESRHFRPTSLRPK 225
Query: 201 NPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGL 260
F R + L L G LL + + ++ F+ + ++ +++GL
Sbjct: 226 TLFINFRLHWRDRGLPLLFAEGFLL------MGSFVTLFNYIGYRLMLSPWHVSQAVVGL 279
Query: 261 MDI--LTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAF 318
+ + LT + P+ + + L + ++ FS +W F M +F+
Sbjct: 280 LSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIF-AGMLLFSA 338
Query: 319 GDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQA--LTRVIGPLIGGQIYISLGHFAPAL 376
G F A + S +++ K Q S L + L I +GG + + G
Sbjct: 339 G---FFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNGVGA 395
Query: 377 MGFIFLIIALLV 388
+ L+IALLV
Sbjct: 396 FIALMLVIALLV 407
pir||D64464 hypothetical protein MJ1317 - Methanococcus jannaschii >gi|1591956
(U67571) hypothetical protein [Methanococcus jannaschii]
Length = 398
Score = 49.2 bits (115), Expect = 6e-05
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 41 DQALIVTSLMAIYALCTFFAAP---ALGSLSDRFGRKPILLISLAGSALGYLIFGLAG-- 95
D+ + + +A+Y L F A G LSD+ GRK +L I GY+++G+
Sbjct: 254 DEKMAIIIPIALYILYNIFYATFSIPFGILSDKIGRKSVLTI-------GYIVYGIVSLG 306
Query: 96 --------SLWMLF-LGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
SL +LF L I L GN AY +D++ E+ R G VG+ ++
Sbjct: 307 FAYFISQKSLILLFALYGIAYALFAGN---QKAYVSDLSSEDIRATALGLFYTVVGLTSL 363
Query: 147 SGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFV 181
+ G L + F +G++++I + L F+
Sbjct: 364 PASLIAGYLWKISPEMTFLYGSVLAIISGLLLLFI 398
gi|1669857 (U70055) macrolide-efflux protein [Streptococcus pyogenes]
Length = 405
Score = 48.8 bits (114), Expect = 8e-05
Identities = 59/223 (26%), Positives = 92/223 (40%), Gaps = 22/223 (9%)
Query: 44 LIVTSLMAIYALCTFFAAPALGSLSDRFGRKPI-----LLISLAGSALGYLIFGLAGSLW 98
L + SL+ F PA+G L DR RK I L+I+ AGS L + F + +W
Sbjct: 46 LSMASLLGFLPYAVF--GPAIGVLVDRHDRKKIMIGADLIIAAAGSVLTIVAFYMELPVW 103
Query: 99 MLFLGRIIDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH 157
M+ + I + T + L A + EE TK G++ + + I P V LL
Sbjct: 104 MVMIVLFIRSIGTAFHTPALNAVTPLLVPEEQLTKCAGYSQSLQSISYIVSPAVAALLYS 163
Query: 158 FGNSVPFYFGALISIANLLYGAFVMNESLPETH------RTRNFSLKQLNPFTQLFQLLR 211
+ A+I+I L GA + + ++ R ++ + + +LR
Sbjct: 164 V-----WELNAIIAIDVL--GAVIASITVAIVRIPKLGDRVQSLDPNFIREMQEGMAVLR 216
Query: 212 M-KNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGL 253
K L LL G L + A+ S+D F TPV I +
Sbjct: 217 QNKGLFALLLVGTLYMFVYMPINALFPLISMDYFNGTPVHISI 259
gi|2618837 (AF017113) YvkA [Bacillus subtilis] >gi|2636047|emb|CAB15538.1|
(Z99122) similar to multidrug-efflux transporter
[Bacillus subtilis]
Length = 444
Score = 48.4 bits (113), Expect = 1e-04
Identities = 31/133 (23%), Positives = 64/133 (47%), Gaps = 4/133 (3%)
Query: 26 SPVVPFMVAPFANAHDQALI-VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
S ++ ++ ++ +++++ +T ++ +Y + P G L D +G K + L +
Sbjct: 24 STMIAVALSSISHTYNESIASITWVVTVYLIVMAVTQPIAGKLGDMYGNKTMYLWGVGLF 83
Query: 85 ALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVT--LFAYFADITDEENRTKVFGWTAAAVG 142
+ L L+ SL +L + R + + GG ++T A + E+ KVFG+ G
Sbjct: 84 LIASLGCALSPSLLLLIVFRALQAV-GGALLTPNSIAIIRHVVSEKRLPKVFGFFGLGAG 142
Query: 143 VGTISGPTVGGLL 155
+G GP +G +L
Sbjct: 143 LGAALGPFIGSIL 155
dbj|BAA19401| (AB001488) SIMILAR TO BICYCLOMYCIN RESISTANCE PROTEIN. [Bacillus
subtilis] >gi|2632881|emb|CAB12387| (Z99107) similar to
bicyclomycin resistance protein [Bacillus subtilis]
Length = 402
Score = 48.4 bits (113), Expect = 1e-04
Identities = 72/336 (21%), Positives = 136/336 (40%), Gaps = 29/336 (8%)
Query: 64 LGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT-GGNIVTLFAYFA 122
+G +SD GR+ LLI + AL L L+ ++ L R + G T +V A
Sbjct: 67 VGPVSDAQGRRKPLLICIFLFALSSLFCALSPNITTLVAARFLQGFTASAGLVLSRAIVR 126
Query: 123 DITDEENRTKVFGWTAAAVGVGTISGPTVGG--LLAHFGN-SVPFYFGALISIANLLYGA 179
D+ +K F V + P GG LL F F+ +I +L A
Sbjct: 127 DVFTGRELSKFFSLLMVITAVAPMVAPMTGGAILLLPFATWHTIFHVLMIIGFLLVLLIA 186
Query: 180 FVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQ- 238
+ E+LP R + + L +K+ + + +A + ++ G+ +
Sbjct: 187 LRLKETLPLEKRIPSSIGTSVKTMGSL-----LKDRSFMGYALTVGFIHGGSFAYVSGTP 241
Query: 239 -FSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIA-YLL 296
D + +P + + I GL I++ FI+ R + +E L+R+A++ +IA +L
Sbjct: 242 FVYQDIYGVSPQVFSILFGINGLA-IISGSFIIGRFGGIIHEKSLLRIAVITAMIATAVL 300
Query: 297 FALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQA---- 352
++ ++++FI+ + T+ + + +QG G + AL
Sbjct: 301 LTMTMIHGPLATLVISIFIYMITIGMVLTS-----TFTLAMEKQGHRAGSASALLGMLPL 355
Query: 353 -LTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALL 387
L ++ PL+G + MG I + A++
Sbjct: 356 LLGSIVSPLVG------INETTAVPMGAIMFVTAVI 385
gb|AAF13999.1|AF201913_2 (AF201913) SgcB [Streptomyces globisporus]
Length = 521
Score = 48.0 bits (112), Expect = 1e-04
Identities = 41/147 (27%), Positives = 67/147 (44%), Gaps = 6/147 (4%)
Query: 42 QALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLF 101
Q L +T + +A+ F +G+L DR GR+ +LL A A+ ++ + S ML
Sbjct: 53 QQLWITDIYG-FAIAGFLVT--MGTLGDRIGRRRLLLGGAAVFAVVSVVAAFSDSAAMLV 109
Query: 102 LGRIIDGLTGGNIV--TLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGL-LAHF 158
+ R + G+ G ++ TL D + R A+A+ G GP VGGL LA F
Sbjct: 110 VSRAVLGVAGATVMPSTLALISNMFEDPKERGTAIAMWASAMMAGVALGPAVGGLVLAAF 169
Query: 159 GNSVPFYFGALISIANLLYGAFVMNES 185
F + + ++ G ++ ES
Sbjct: 170 WWGSVFLIAVPVMLLVVVTGPVLLTES 196
emb|CAB66155.1| (AJ011372) sugar transporter [Homo sapiens]
Length = 507
Score = 47.6 bits (111), Expect = 2e-04
Identities = 33/92 (35%), Positives = 42/92 (44%), Gaps = 9/92 (9%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLS-----DRFGRKPILLIS 80
SPV+P + + D L +T A + F A G LS D GRK ++ S
Sbjct: 60 SPVIPAL----ERSLDPDLHLTKSQASWFGSVFTLGAAAGGLSAMILNDLLGRKLSIMFS 115
Query: 81 LAGSALGYLIFGLAGSLWMLFLGRIIDGLTGG 112
SA GY + A LWML LGR + G GG
Sbjct: 116 AVPSAAGYALMAGAHGLWMLLLGRTLTGFAGG 147
gi|2293329 (AF008220) YtbD [Bacillus subtilis] >gi|2635369|emb|CAB14864|
(Z99118) similar to antibiotic resistance protein
[Bacillus subtilis]
Length = 396
Score = 47.6 bits (111), Expect = 2e-04
Identities = 78/357 (21%), Positives = 141/357 (38%), Gaps = 44/357 (12%)
Query: 50 MAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGL 109
+++YAL F AP L SL+ RK +LL + G + A S+ +L R+I
Sbjct: 51 VSLYALGVTFGAPILTSLTSSMSRKTLLLWIMFIFIAGNTMAATASSIGILLAARVISAF 110
Query: 110 TGGNIVTLFAYF-ADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYFGA 168
+ G +++ + ADI E+ R + V T++G G + G + F
Sbjct: 111 SHGVFMSIGSTIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFI---GQQFGWRFAF 167
Query: 169 LISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLP 228
++ IA + AF+ N L + + T + L++ +RLL ++ L
Sbjct: 168 MVIIAVGII-AFITNGILVPSKLRKGTK-------TTMRDQLKLVTNSRLLLLFVITALG 219
Query: 229 NGALQAI----------ISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLAN 278
G + ++ F + A + G+AI+I ++ KL+N
Sbjct: 220 YGGTFVVFTYLSPLLQEVTGFKAGTVAVILLGYGIAIAIGNMIG-----------GKLSN 268
Query: 279 EDKLIRLALVCEIIAYLLFAL---SAFSKMWPFFILAMFIFAF----GDSIFGTAFNGKL 331
+ + L + + A +LF L + + IL M + AF G ++ +
Sbjct: 269 RNPIAALFYMFIVQAIVLFVLTFTAPYQAAGLITILCMGLLAFMNVPGLQVYVVMLAERF 328
Query: 332 SKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLV 388
SA A AL G +GG I S+G A +G + ++ A+++
Sbjct: 329 VPSAVDVASAMNIAAFNAGIAL----GSYLGGVITDSIGLIHTAWIGGLMVVGAVIL 381
pir||S58131 integral membrane protein LmrP - Lactococcus lactis
>gi|1052754|emb|CAA61918| (X89779) LmrP integral
membrane protein [Lactococcus lactis]
Length = 408
Score = 47.6 bits (111), Expect = 2e-04
Identities = 74/294 (25%), Positives = 115/294 (38%), Gaps = 35/294 (11%)
Query: 36 FANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPIL----LISLAGSALGYLIF 91
+ N + + I L+A+ A+ TF A G +DR GRKP++ +I L G+AL +
Sbjct: 35 YYNQYLGSAITGILLALSAVATFVAGILAGFFADRNGRKPVMVFGTIIQLLGAALA-IAS 93
Query: 92 GLAGSL--WMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISG 148
L G + W F+ ++ ++T A D ++ ENR VF A + I G
Sbjct: 94 NLPGHVNPWSTFIAFLLISFGYNFVITAGNAMIIDASNAENRKVVFMLDYWAQNLSVILG 153
Query: 149 PTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQ 208
+G L L + + FVM E+ T + K N F
Sbjct: 154 AALGAWLFRPAFEALLVILLLTVLVSFFLTTFVMTETFKPTVKVDE---KAENIFQAYKT 210
Query: 209 LLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIF 268
+L+ K ++F G N A II QF D+F PV + + + +I+
Sbjct: 211 VLQDKTY--MIFMG-----ANIATTFIIMQF--DNF--LPVHLSNSFKTITFWGF--EIY 257
Query: 269 IMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPF---FILAMFIFAFG 319
L I L L C ++ L+ L+ +K W FI A G
Sbjct: 258 GQRML--------TIYLILACVLVVLLMTTLNRLTKDWSHQKGFIWGSLFMAIG 303
gb|AAD14769| (AF125971) contains similarity to tetracycline transporter-like
proteins [Caenorhabditis elegans]
Length = 452
Score = 47.3 bits (110), Expect = 2e-04
Identities = 76/350 (21%), Positives = 136/350 (38%), Gaps = 28/350 (8%)
Query: 64 LGSLSDRFGRKPILLISLAGSALG-----YLIFGLAGSLWMLFLGRIIDGLTGGNIV--- 115
LG+ +D + K L+I G LG + + + S++ L + + GL GG I
Sbjct: 69 LGAATDYWSIKIPLIIPYIGCILGTINYVFQSYFIHTSVYFLLISDALFGLCGGFIAIIS 128
Query: 116 TLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFYFGALISIAN 174
T Y + R+ A+G+G G + G + G +V F + +
Sbjct: 129 TTLTYGVKTSMLRYRSYRIAGVEGAIGLGGTVGFALSGTIREACGYAVTFLIILGLQLLA 188
Query: 175 LLYGAFVMNESL-----PETHRTR-NFSLKQLNPFTQLFQ--LLRMKNLNRLLFAGILLW 226
LLY + E+ P+ H + + + KQL + F + + + LL +L +
Sbjct: 189 LLYLLGLAKETKFEPVRPDEHTSLISTTGKQLVAVIREFYRVITKSRQFRLLLILNLLAF 248
Query: 227 ----LPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRL-LKLANEDK 281
L L I + W G + + +F+ P L +KL ++
Sbjct: 249 GLEMLVFSGLSDIQYSYLRYKLQWGDKKYGWFSGLSYGITTAAVLFLYPLLRMKLMSDGM 308
Query: 282 LIRLALVCEIIAYLLFALSAFSKM-WPFFILAMFIFAFGDSIFGTAFNGKLSKSATSSEQ 340
L L L ++I+ +FA M + ++ MF + T F +S EQ
Sbjct: 309 LATLGLFFKMISLFMFAFLQNEVMAYSIAVIVMF-----NRFVSTGFRAFISSLIDMQEQ 363
Query: 341 GKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLS 390
GK+ L+ +T ++ I +Y + F P L+ I + L+ L+
Sbjct: 364 GKIFSVISLLEGITTLVATSIYNNVYPNTLTFFPGLLYLISAVTLLIPLA 413
sp|Q46966|MDFA_ECOLI MULTIDRUG TRANSLOCASE MDFA (CHLORAMPHENICOL RESISTANCE PUMP CMR)
>gi|1787065 (AE000186) proton motive force efflux pump
[Escherichia coli] >gi|4062426|dbj|BAA35546| (D90722)
Hypothetical protein f410 [Escherichia coli]
>gi|4062433|dbj|BAA35554| (D90723) Hypothetical protein
f410 [Escherichia coli]
Length = 410
Score = 47.3 bits (110), Expect = 2e-04
Identities = 74/324 (22%), Positives = 128/324 (38%), Gaps = 45/324 (13%)
Query: 46 VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRI 105
V + M Y F LG LSDR GR+P++L + + L LA ++ L R
Sbjct: 54 VPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRF 113
Query: 106 IDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPF 164
+ G++ I + +A + +E K+ A + + GP VG H +P+
Sbjct: 114 LQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHV---LPW 170
Query: 165 YFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
++ A F + ++PET T++ + L +K L R
Sbjct: 171 EGMFVLFAALAAISFFGLQRAMPET-------------ATRIGEKLSLKELGR----DYK 213
Query: 225 LWLPNGALQA---IISQFSLDSFAW---TPVLI----GLAISIMGLMDI------LTQIF 268
L L NG A + SL AW +P++I L+ GL+ + +
Sbjct: 214 LVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNL 273
Query: 269 IMPRLLKLANEDKLIRLA----LVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
++ RL LI + ++ ++A +S+ + +W L+++ F G + G
Sbjct: 274 LLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAG 333
Query: 325 ----TAFNGKLSKSATSSEQGKLQ 344
T F +SK S+ G LQ
Sbjct: 334 LVRLTLFASDMSKGTVSAAMGMLQ 357
sp|P31442|EMRD_ECOLI MULTIDRUG RESISTANCE PROTEIN D >gi|290522 (L10328) similar to drug
resistance translocases [Escherichia coli] >gi|1790107
(AE000445) 2-module integral membrane pump; multidrug
resistance [Escherichia coli]
Length = 396
Score = 47.3 bits (110), Expect = 2e-04
Identities = 77/357 (21%), Positives = 130/357 (35%), Gaps = 37/357 (10%)
Query: 46 VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRI 105
V S+M Y L + G +SDR GR+P++L+ ++ L L+ SL +L
Sbjct: 47 VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASA 106
Query: 106 IDGL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPF 164
+ G+ TG V D+ + + V + P +GGLL N
Sbjct: 107 MQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRAC 166
Query: 165 YFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
Y L+ A + F M +PET + L + LF +L G+
Sbjct: 167 YLFLLVLCAGV---TFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGL- 222
Query: 225 LWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL--TQIFIMPRLLKLANE--D 280
A I+ F S ++GL+ + ++ IL F N+
Sbjct: 223 ---------AGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFS 273
Query: 281 KLIRLALVCEIIAYLLFALS---AFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSK-SAT 336
L+ +++C ++A LL + +W + A F +F A +G +
Sbjct: 274 TLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFL 333
Query: 337 SSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAP----ALMGFIFLIIALLVL 389
+ G L GG Q IG + SL P +G + ++ LL++
Sbjct: 334 AGTAGALVGGLQN-----------IGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIV 379
dbj|BAA29302.1| (AP000001) 385aa long hypothetical protein [Pyrococcus horikoshii]
Length = 385
Score = 46.9 bits (109), Expect = 3e-04
Identities = 87/377 (23%), Positives = 157/377 (41%), Gaps = 48/377 (12%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
++PF + ++ I+ S + +F A G LS +FG K L+++ ALG
Sbjct: 25 IMPFYLKALGYDMNKMGILFSTQTLIGGISFLLA---GQLSLKFGYKKTLILAAGMGALG 81
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGG----NIVTLFAYFADITDEENRTKVFGWTAAAVGV 143
+ LA + ML LG + G+ G N L + + +EE R ++F + + G+
Sbjct: 82 RIFQVLAYNFEMLLLGFFLVGVNMGLRDPNYSALLS--EKVKNEEERHRIFSY---SFGL 136
Query: 144 GTIS---GPTVGGL----LAHFGNSVPFYFGALISIA----NLLYGAFVMNESLPETHRT 192
GT+ G V G L G S + +I++A +++ A ++ + +P T
Sbjct: 137 GTLMNALGVLVAGYLPGHLVSLGYSERLAYKLVIALALIQFAIVFPALIVIKDVPVTTSK 196
Query: 193 RNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIG 252
+ K+L + ++L+ + L+ G + +P ++ + +F D + V
Sbjct: 197 IKWR-KEL-----IIKILKFSLPSALIGLGAGITIPYMSIYFNL-RFGRDIREISWVFFS 249
Query: 253 LAISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILA 312
+ +MGL FI+P L+ K+I +L+F P F +A
Sbjct: 250 QEV-VMGLGS-----FILPALINRLGPVKVITYFQGSAAFLFLIF------PSLPTFAIA 297
Query: 313 MFIFAFGDSIFGTAF--NGKLSKSATSSEQGKLQGG-SQALQALTRVIGPLIGGQIY-IS 368
F++ + + N S+E+ G +A R +G IGG ++ IS
Sbjct: 298 SFVYIIRSILMNIVWPVNDSFMMGFFSTEEKATAAGIRRAFSTFMRGLGNYIGGALFAIS 357
Query: 369 LGHFAPALMGFIFLIIA 385
L + P IF IIA
Sbjct: 358 LAY--PFYTTAIFYIIA 372
gb|AAD14701| (AF125952) contains similarity to monocarboxylate transporters
[Caenorhabditis elegans]
Length = 571
Score = 46.9 bits (109), Expect = 3e-04
Identities = 53/209 (25%), Positives = 92/209 (43%), Gaps = 34/209 (16%)
Query: 32 MVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG---Y 88
+V +A+ + ++++I C + A P S + FG I +++AGS L +
Sbjct: 70 LVPIWADQFGSTSVAGAVISILTGCYYLAGPLASSFVNVFG---IRSVAIAGSILATTAF 126
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGG---------NIVTLFAYFADITDEENRTKVFGWTAA 139
L+ A ++W L+L + G+ GG +IV L YFA + R+ G
Sbjct: 127 LLSRFASTIWELYL---LFGVLGGIGFGCMYLPSIVILSTYFA-----KKRSVATGIAVC 178
Query: 140 AVGVGTISGPTVGG-LLAHFGNSVPFYFGALISIA------NLLYGAFVMNESLPE--TH 190
G+GT+ T+ G + +FG V + L +IA +LL+ E +
Sbjct: 179 GSGIGTMVFSTINGPVFDYFGKDVGSFMVYLAAIAISGSLFSLLFAPLKATEHQVKKVAK 238
Query: 191 RTRNFSLKQLNPFTQLFQLLR--MKNLNR 217
RN+ K P +L + +R ++ LNR
Sbjct: 239 MVRNYEGKPEEPTQRLLEDVRNDLEELNR 267
gb|AAC27108.1| (AF009672) VanK [Acinetobacter sp. ADP1]
Length = 448
Score = 46.9 bits (109), Expect = 3e-04
Identities = 87/377 (23%), Positives = 159/377 (42%), Gaps = 65/377 (17%)
Query: 64 LGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIV----TLFA 119
L L+D+ GR+ ++LI LA + + L GL S ML R + G+ G I+ L +
Sbjct: 75 LAPLADKIGRRLLILICLAIAGISMLACGLVHSHSMLAALRFVTGIGVGGILASSNVLAS 134
Query: 120 YFADITDEENRTKVFGWTAAAVGV---GTISGPTVGGLLA-----HFGNSVPFYFGALIS 171
+A++ W + AV + G G T+GG+L+ H G F G + +
Sbjct: 135 EYANLR----------WRSLAVSLMSTGYGIGATLGGILSLLLIEHLGWRSIFLAGGVTT 184
Query: 172 IANLLYGAFVMNESLPE-THRTRNFSLKQLNPFTQLFQLLRMKNLNR------------- 217
+ LL +++ ESL + +L+++N Q L+R+ L +
Sbjct: 185 VVMLLVSLWLLPESLDYLLAKKPKQALEKINLTVQRIGLVRLNALPQHEKNTQQHSSDIA 244
Query: 218 LLFAG------ILLWLPNGALQAIISQFSLDSFAWTP-VLIGLAIS-----IMGLMDILT 265
LF G + LW A ++ F +WTP +LI + +S G++ +
Sbjct: 245 KLFQGKQGFQTLCLWF---AFFLVMFGFYF-VMSWTPKILIAMGMSPSQGVTTGILISIG 300
Query: 266 QIFIMPRLLKLANEDKLIR-LALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
+F + LA+ K+ L+L + A ++ A S +A+ + ++
Sbjct: 301 GVFGAAIIGLLASRIKIFHALSLFLGLTAVCVWLFVAVSSQ---VSIALMVGLLLGTLIN 357
Query: 325 TAFNGKLSKSAT---SSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAP----ALM 377
G S S T + + + G + + ++ P + G I++ G AP A
Sbjct: 358 GCVAGLYSISPTIYDADIRSRGVGYAIGFGRIGAILSPTVAG-IFLDKG-LAPSTLYAYY 415
Query: 378 GFIFLIIALLVLSKTKS 394
G +F++ L+LS +K+
Sbjct: 416 GIVFILAIFLILSLSKA 432
pir||C55220 msyB homolog, pbpD 5'-region - Bacillus subtilis (fragment)
>gi|520535 (U11882) unknown [Bacillus subtilis]
Length = 256
Score = 46.9 bits (109), Expect = 3e-04
Identities = 32/111 (28%), Positives = 56/111 (49%), Gaps = 2/111 (1%)
Query: 65 GSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDGLT-GGNIVTLFAYFAD 123
G L DR+G + IL+ L ++ ++ LA SL +L + R + G+ GG + + A
Sbjct: 126 GDLGDRYGHRRILIGLLLAASFFFIPQALASSLSVLLVFRFLFGMAMGGLLPCITAAIRV 185
Query: 124 ITDEENRTKVFGWTAAAVGVGTISGPTVGGLL-AHFGNSVPFYFGALISIA 173
+ +V G+ + +G + GP +GG++ +HF S FY A + A
Sbjct: 186 QAPGSIQGEVLGYNVSFRFLGNVLGPLLGGIISSHFTISATFYVTAFLFFA 236
Score = 42.6 bits (98), Expect = 0.006
Identities = 59/264 (22%), Positives = 115/264 (43%), Gaps = 27/264 (10%)
Query: 145 TISGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNES--LPETHRTRNFSLKQLN 201
++ GP +GG+LA FG + F+ + + +++L F + E +T + ++S K++
Sbjct: 1 SLFGPLLGGMLADRFGFTYTFFITSFVIFSSVLLVLFGVKEKHLAEKTAKRTSYSRKEV- 59
Query: 202 PFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQF--SLDSFAWTPVLIGLAISIMG 259
L + L ++ +L+ N ++Q +++ + L G+A S G
Sbjct: 60 ----LSYIFHHPALWVMMLLTMLIQTGNFSIQPLLALYVNELHGPVNLAFFSGMAFSATG 115
Query: 260 LMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFG 319
L +L + + L + R+ + + A F A + +L +F F FG
Sbjct: 116 LGSLL----LARKWGDLGDRYGHRRILIGLLLAASFFFIPQALASS--LSVLLVFRFLFG 169
Query: 320 DSIFGT--AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALM 377
++ G + A S QG++ G + + + L V+GPL+GG I HF +
Sbjct: 170 MAMGGLLPCITAAIRVQAPGSIQGEVLGYNVSFRFLGNVLGPLLGG---IISSHFTISAT 226
Query: 378 GFI--FLIIA----LLVLSKTKSD 395
++ FL A L ++ K + D
Sbjct: 227 FYVTAFLFFAGACMLWIMQKLRKD 250
emb|CAB49137.1| (AJ248283) MULTIDRUG RESISTANCE PROTEIN [Pyrococcus abyssi]
Length = 387
Score = 46.5 bits (108), Expect = 4e-04
Identities = 68/311 (21%), Positives = 130/311 (40%), Gaps = 27/311 (8%)
Query: 84 SALGYLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVG 142
S L Y+ L+GS+ + LGR + G G + + D+ + + GW
Sbjct: 81 SGLLYIASALSGSIMVFALGRAVHGFAMGIFFPSSLSSAVDLAPKGRVGEALGWRGMMFS 140
Query: 143 VGTISGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFV---MNESLPETHRTRNFSLK 198
+G I GP +GG ++ FG + F+ + S+ ++ V + E + H + +
Sbjct: 141 LGNIVGPAIGGFISDKFGFGMAFFSSIVFSVLGAIFVLLVWREVGEIKVDKHEEHSGYRE 200
Query: 199 QLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIM 258
L PF + L + ++ + ++G++ +LP A+ L + GL + IM
Sbjct: 201 LLKPFF-ISACLSLFFIS-MAYSGVVTFLP-----ALYKVSGLGQ-----SVFGLYMMIM 248
Query: 259 GLMDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAF 318
GL ++ + R +IR+ + +AYLL F P ++ I
Sbjct: 249 GLASFFMRV-VGGRSADKLGPIPVIRVGVSGIFLAYLLLLKFKFP---PNSYISAAISGA 304
Query: 319 GDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMG 378
G FG + L A + GK++ ++ + +G ++ GQ+ + L G
Sbjct: 305 G---FGLSLPA-LQYMALAKLPGKIRTMGSSIYTMFFDLG-MLSGQVGLGLVAQVRGYEG 359
Query: 379 FIFLIIALLVL 389
+F +I++L L
Sbjct: 360 -VFPVISILPL 369
emb|CAA69997| (Y08743) MdfA [Escherichia coli]
Length = 410
Score = 46.5 bits (108), Expect = 4e-04
Identities = 74/324 (22%), Positives = 128/324 (38%), Gaps = 45/324 (13%)
Query: 46 VTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRI 105
V + M Y F LG LSDR GR+P++L + + L LA ++ L R
Sbjct: 54 VPTSMNAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLAQNIEQFTLLRF 113
Query: 106 IDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPF 164
+ G++ I + +A + +E K+ A + + GP VG H +P+
Sbjct: 114 LQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLVGAAWIHV---LPW 170
Query: 165 YFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
++ A F + ++PET T++ + L +K L R
Sbjct: 171 EGMFVLFAALAAISFFGLQRAMPET-------------ATRIGEKLSLKELGR----DYK 213
Query: 225 LWLPNGALQA---IISQFSLDSFAW---TPVLI----GLAISIMGLMDI------LTQIF 268
L L NG A + SL AW +P++I L+ GL+ + +
Sbjct: 214 LVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNL 273
Query: 269 IMPRLLKLANEDKLIRLA----LVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFG 324
++ RL LI + ++ ++A +S+ + +W L+++ F G + G
Sbjct: 274 LLARLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAG 333
Query: 325 ----TAFNGKLSKSATSSEQGKLQ 344
T F +SK S+ G LQ
Sbjct: 334 LVRLTLFASDMSKGTVSAAMGMLQ 357
ref|NP_013031.1|YKR105C| Ykr105cp >gi|549651|sp|P36172|YK85_YEAST HYPOTHETICAL 63.4 KD
PROTEIN IN SIR1 3'REGION >gi|539142|pir||S38184
hypothetical protein YCL069W homolog YKR105c - yeast
(Saccharomyces cerevisiae) >gi|486615|emb|CAA82185|
(Z28330) ORF YKR105c [Saccharomyces cerevisiae]
Length = 582
Score = 46.5 bits (108), Expect = 4e-04
Identities = 34/127 (26%), Positives = 55/127 (42%), Gaps = 5/127 (3%)
Query: 28 VVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALG 87
++ + F N +VT Y+L + G + G + L++++ G
Sbjct: 60 IIDVVAEQFGNYSKTGWLVTG----YSLPNAILSLIWGRFASIIGFQHSLILAILIFEAG 115
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAVGVGTI 146
LI LA S+ ML GR++ G+ G + TL F + E +R V + A V I
Sbjct: 116 SLIAALASSMNMLIFGRVVAGVGGSGLQTLCFVIGCTMVGERSRPLVISILSCAFAVAAI 175
Query: 147 SGPTVGG 153
GP +GG
Sbjct: 176 VGPIIGG 182
dbj|BAA17836| (D90909) quinolene resistance protein NorA [Synechocystis sp.]
Length = 418
Score = 46.1 bits (107), Expect = 5e-04
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 36 FANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAG 95
F D A ++ A+ +F LGSL+D +GR ++ SL L + A
Sbjct: 247 FVREIDLATYAGVFYSVAAIASFVPRLFLGSLADTYGRGLFIVGSLICYLLSMVCLAQAD 306
Query: 96 SLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGVG-TISGPTVGG 153
+ W L ++G G ++ T A +D + E R +VF + G I+ P +G
Sbjct: 307 NSWELLTAAALEGAGSGILLPTTIALISDRSSLEERGRVFSVCMSGFDGGIAIAAPIMGV 366
Query: 154 LLAHFGNSVPFYF-GALISIANLLYGAF 180
L FG F+ G L A +++G F
Sbjct: 367 LNEIFGYRHVFWLSGGLALAAIMVFGIF 394
Score = 43.8 bits (101), Expect = 0.003
Identities = 58/264 (21%), Positives = 109/264 (40%), Gaps = 30/264 (11%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLIS---LAGSALGYLIFGLAGSLWML--FLG 103
+M +AL + +G L DR GRK ++I +A + LGYL+ G+L + F G
Sbjct: 56 IMGSFALGLLGSRIWIGQLVDRRGRKIAIVIGALVVALAPLGYLLTATVGALMAIRAFHG 115
Query: 104 RIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAH-FGNSV 162
+ T G + D++ + R ++ G+ + AV +G GP VG ++ G
Sbjct: 116 ICLAAYTTG----YNSLVVDLSPPQQRGEIIGYMSLAVPIGMGFGPAVGAYISQSIGYEF 171
Query: 163 PFYFGALISIANLLYGAFVMNESLPET--------HRTRNFSLKQLNPFTQLFQLLRMKN 214
F +L+ +L+ V P+ R R S+ +L + +
Sbjct: 172 LFIASSLLGFISLVLALQVRENRPPDQSSAEDVFGDRPRPRSIGKLLTSRSMAVPTLVLL 231
Query: 215 LNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLL 274
L LLF + +LP + + L ++A G+ S+ + + ++F + L
Sbjct: 232 LIGLLFGNLATFLP-----LFVREIDLATYA------GVFYSVAAIASFVPRLF-LGSLA 279
Query: 275 KLANEDKLIRLALVCEIIAYLLFA 298
I +L+C +++ + A
Sbjct: 280 DTYGRGLFIVGSLICYLLSMVCLA 303
Score = 43.0 bits (99), Expect = 0.005
Identities = 52/209 (24%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 196 SLKQLNPFTQLFQLLRMKNLNRLLFAGILL-WLPNGALQAIISQFSLDSFAWTPVLIGLA 254
+L+QL+P TQ LLFA +L+ WL AL + ++ D A T +G
Sbjct: 6 TLRQLSPSTQ--------KTFALLFASVLMFWLSLTALLPTLPMYAQDVGA-TKQQVGWI 56
Query: 255 ISIMGLMDILTQIFIMPRLLKLANEDKLIRLALVCEI--IAYLLFA-LSAFSKMWPFFIL 311
+ L + ++I+I + + + ++ ALV + + YLL A + A + F +
Sbjct: 57 MGSFALGLLGSRIWIGQLVDRRGRKIAIVIGALVVALAPLGYLLTATVGALMAIRAFHGI 116
Query: 312 AMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGH 371
+ + + T +N + + ++G++ G + GP +G I S+G+
Sbjct: 117 CL-------AAYTTGYNSLVVDLSPPQQRGEIIGYMSLAVPIGMGFGPAVGAYISQSIGY 169
Query: 372 ----FAPALMGFIFLIIALLVLSKTKSDQ 396
A +L+GFI L++AL V DQ
Sbjct: 170 EFLFIASSLLGFISLVLALQVRENRPPDQ 198
pir||C64167 hypothetical protein HI1104 - Haemophilus influenzae (strain Rd
KW20) >gi|1574658 (U32790) transporter protein
[Haemophilus influenzae Rd]
Length = 407
Score = 46.1 bits (107), Expect = 5e-04
Identities = 82/369 (22%), Positives = 139/369 (37%), Gaps = 50/369 (13%)
Query: 48 SLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIID 107
SL+ + F G+LSD++GR +L ++ A+ + +A W L + R I
Sbjct: 50 SLVTWTLIGAVFGGILFGALSDKYGRVRVLTWTILLFAVFTGLCAIAQGYWDLLIYRTIA 109
Query: 108 GL-TGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-LLAHFGNSVPFY 165
G+ GG A A+ +R K + A VG + + LL H G F
Sbjct: 110 GIGLGGEFGIGMALAAEAWPARHRAKAASYVALGWQVGVLGAALLTPLLLPHIGWRGMFL 169
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ--------LFQLL------- 210
G ++ AFV H F+ KQ TQ FQLL
Sbjct: 170 VG--------IFPAFVAWFLRSHLHEPEIFTQKQTALSTQSSFTDKLRSFQLLIKDKATS 221
Query: 211 -------RMKNLNRLLFAGILLWLPNGALQAIISQFSL-DSFAWTPVLI-GLAISIMGLM 261
+ ++ + GI++WLPN + + FSL S WT V + G+ I
Sbjct: 222 KISLGIVVLTSVQNFGYYGIMIWLPNFLSKQL--GFSLTKSGLWTAVTVCGMMAGIWIFG 279
Query: 262 DILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDS 321
+ +I P L L +L V I+ Y S + + F+ F +
Sbjct: 280 QLADRIGRKPSFL-------LFQLGAVISIVVY-----SQLTDPDIMLLAGAFLGMFVNG 327
Query: 322 IFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG-HFAPALMGFI 380
+ G + ++++ + + Q + GP++ G + ++ A AL+ I
Sbjct: 328 MLG-GYGALMAEAYPTEARATAQNVLFNIGRAVGGFGPVVVGSVVLAYSFQTAIALLAII 386
Query: 381 FLIIALLVL 389
++I L +
Sbjct: 387 YVIDMLATI 395
dbj|BAA29305.1| (AP000001) 387aa long hypothetical protein [Pyrococcus horikoshii]
Length = 387
Score = 45.3 bits (105), Expect = 0.001
Identities = 79/366 (21%), Positives = 146/366 (39%), Gaps = 39/366 (10%)
Query: 30 PFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAG--SALG 87
PF+V A +V+ L Y +G RF + L ++ G S +
Sbjct: 37 PFLVGLVAGVTSGVSLVSKLFGGY----------IGDRGYRF--HAMFLGNILGIISGVF 84
Query: 88 YLIFGLAGSLWMLFLGRIIDGLTGGNIV-TLFAYFADITDEENRTKVFGWTAAAVGVGTI 146
Y+I + S+++ +GR I G+ G + + D+ + + GW +G I
Sbjct: 85 YIISAMFHSIFIFAIGRAIHGVGMGIFFPSSLSSAVDLAPKGRVGEALGWRGMMFSLGNI 144
Query: 147 SGPTVGGLLA-HFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQ 205
GP +GG ++ FG F L SI ++ V E R ++ + + +
Sbjct: 145 IGPGIGGFVSDRFGFVSAFLLAILFSIIGAIFVLAVWREVGEIKFEKR----EERSGYRE 200
Query: 206 LFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILT 265
L ++ + L F + +G + + + + + + GL + IMG+ LT
Sbjct: 201 LIRVFFITACLSLFFISVAY---SGVVTFLPALYKVSGLG--QGIFGLYMMIMGVSSFLT 255
Query: 266 QIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGT 325
++ + R + R+ + +I+Y L F P L FI G FG
Sbjct: 256 RV-VGGRSADRFGPIPVARIGVGMILISYALLVKFKFP---PHSYLVAFISGAG---FGL 308
Query: 326 AFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGF--IFLI 383
+ L A + G+++ ++ + +G L G + LG+ A L G+ +F +
Sbjct: 309 TYPA-LQYMALAKLPGRIRTMGSSIYTMFFDLGMLSG---QVGLGYVA-QLSGYEGVFPV 363
Query: 384 IALLVL 389
+ALL L
Sbjct: 364 VALLPL 369
gi|2435399 (U80063) putative transmembrane, proton-dependent transport protein
[Streptomyces cinnamoneus]
Length = 519
Score = 44.9 bits (104), Expect = 0.001
Identities = 50/163 (30%), Positives = 67/163 (40%), Gaps = 12/163 (7%)
Query: 32 MVAPFANAHDQALIVTSLMAIYALCTFFAAPAL---GSLSDRFGRKPILLISLAGSALGY 88
+ PF + D L T L+ I + +F A L GSL DR GRK +LL
Sbjct: 49 LATPFLS-EDLRLSGTQLLWIGDIYSFVIAGLLVSMGSLGDRIGRKKLLLTGAVAFGAVS 107
Query: 89 LIFGLAGSLWMLFLGRIIDGLTGGNIVTL----FAYFADI-TDEENRTKVFGWTAAAVGV 143
++ A S M+ R + G+ G TL A +I D + RT G A
Sbjct: 108 VLNAYATSPEMMIAARALLGV--GRAATLMPSTLALIRNIFHDPKERTFAIGIWGAMASA 165
Query: 144 GTISGPTVGG-LLAHFGNSVPFYFGALISIANLLYGAFVMNES 185
G GP VGG LL HF F + +L G ++ ES
Sbjct: 166 GAAVGPVVGGFLLEHFWWGSVFLINLPVMAVLVLVGIKLLPES 208
emb|CAB75124.1| (AL139075) putative sugar transporter [Campylobacter jejuni]
Length = 418
Score = 44.5 bits (103), Expect = 0.002
Identities = 82/355 (23%), Positives = 138/355 (38%), Gaps = 37/355 (10%)
Query: 58 FFAAPALGSLSDRFGRKPILLISLAGSALGYLIF----GLAGSLWMLFLGRIIDGLTGGN 113
F A G +++RF K ++ LA A+G L+ LA LF I+ G
Sbjct: 58 FIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHLFLFAFFILACGIGSL 117
Query: 114 IVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGG-------------------- 153
+ Y + DE+N + + G+G GP +GG
Sbjct: 118 ETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALFLSITKQEEGASKEQIQA 177
Query: 154 -LLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRM 212
L+A+ GN Y G + I L+ AFV N+ LPE + KQ + ++ + +
Sbjct: 178 ALVANMGNVQLVYIGIAV-IVILILIAFVANK-LPEGSAVSD-DYKQKDDSKPIY-VFKH 233
Query: 213 KNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPR 272
++ N L A L A A + ++ G + L+ + +
Sbjct: 234 RHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYYFSIALVAFMLGRIVSTP 293
Query: 273 LLKLANEDKLIRL-ALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKL 331
L+K+ +K++ +L+ +I + L+ S F + +L + +F F F T F +
Sbjct: 294 LMKIIKGEKILGFYSLINVLICFSLYFASGFFSI----VLLIALFFFMSISFPTIF--AV 347
Query: 332 SKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPAL-MGFIFLIIA 385
+ Q KL G + + I P+I G I G A L M +FL +A
Sbjct: 348 ATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYLAMAPLFLYVA 402
emb|CAB46978.1| (AL096825) putative transmembrane transport protein [Streptomyces
coelicolor]
Length = 426
Score = 44.5 bits (103), Expect = 0.002
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 33/211 (15%)
Query: 36 FANAHDQALI-VTSLMAIYALCTFFAAPA----LGSLSDRFGRKPILLISLAGSALGYLI 90
F D +L+ + S A++A+ FF P +G+++DR GR+ L +++ L+
Sbjct: 46 FPKGADNSLVPLLSTFAVFAV-GFFMRPVGGLLMGAIADRRGRRAALTVTILLMGGSSLL 104
Query: 91 FGL------AGSL--WMLFLGRIIDGLT-GGNIVTLFAYFADITDEENRTKVFGWTAAAV 141
GL AG L +L L R++ GL+ GG + + R + +
Sbjct: 105 VGLTPTYAAAGVLAPVVLVLARLLQGLSVGGEFAASTTFLVESAGPGRRGLFSSFQYVST 164
Query: 142 GVGTISGPTVGGLLAH---------FGNSVPFYFGALISIANLLYGAFVMNESLPETHRT 192
G + + LL +G +PF FGA++S+ F + + ET T
Sbjct: 165 TAGQLVASGIATLLVDTLSEDRMNGWGWRLPFVFGAVLSLV-----GFWIRQGAQETRST 219
Query: 193 RNFSLKQLNPFTQLFQLLRMKNLNRLLFAGI 223
+Q P LF+ LR LL GI
Sbjct: 220 E----QQRAPRPALFEALRRHPRESLLICGI 246
sp|Q01827|VMT2_RAT SYNAPTIC VESICLE AMINE TRANSPORTER (MONOAMINE TRANSPORTER)
(VESICULAR AMINE TRANSPORTER 2) (VAT2) >gi|207108
(M97381) synaptic vesicle amine transporter [Rattus
norvegicus]
Length = 515
Score = 44.5 bits (103), Expect = 0.002
Identities = 73/346 (21%), Positives = 134/346 (38%), Gaps = 31/346 (8%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L A A P +G L++R G + + ++F + S L + R + G
Sbjct: 135 LFASKATVQLLTNPFIGLLTNRIGYPIPMFAGFCIMFISTVMFAFSSSYAFLLIARSLQG 194
Query: 109 LTGG--NIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHF-GNSVPFY 165
+ ++ + + TD+E R K G + +G + GP G +L F G + PF
Sbjct: 195 IGSSCSSVAGMGMLASVYTDDEERGKPMGIALGGLAMGVLVGPPFGSVLYEFVGKTAPFL 254
Query: 166 FGALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILL 225
A + + + FV+ S + + P T L +K+ L+ AG +
Sbjct: 255 VLAALVLLDGAIQLFVLQPSRVQPESQKG------TPLTTL-----LKDPYILIAAGSIC 303
Query: 226 WLPNG--ALQAIISQFSLDSFAWTPVLIGLAISIMGLMDIL-TQIF-----IMPRLLKLA 277
+ G L+ + + +++ +G+A + ++ T IF M R L
Sbjct: 304 FANMGIAMLEPALPIWMMETMCSRKWQLGVAFLPASISYLIGTNIFGILAHKMGRWLCAL 363
Query: 278 NEDKLIRLALVCEIIAYLLFALSAFSKMWPFFILAMFIFAFGDSIFGTAFNGKLSKSATS 337
++ ++++C + FA + + + P F + IF S+ G L
Sbjct: 364 LGMVIVGISILC-----IPFAKNIYGLIAPNFGVGFAIFMVDSSMM--PIMGYLVDLRHV 416
Query: 338 SEQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLI 383
S G + + + IGP GG I ++G P LM I +I
Sbjct: 417 SVYGSVYAIADVAFCMGYAIGPSAGGAIAKAIGF--PWLMTIIGII 460
sp|P21906|GLF_ZYMMO GLUCOSE FACILITATED DIFFUSION PROTEIN >gi|95541|pir||A37855
glucose-facilitated diffusion protein - Zymomonas
mobilis >gi|155590 (M60615) glucose transport protein
[Zymomonas mobilis]
Length = 473
Score = 44.5 bits (103), Expect = 0.002
Identities = 42/145 (28%), Positives = 66/145 (44%), Gaps = 10/145 (6%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPAL-GSLSDRFGRKPILLISLA-- 82
+PV +AP + A ++ ++ + L L G + RFGR+ LL+S
Sbjct: 36 TPVDIHFIAPRHLSATAAASLSGMVVVAVLVGCVTGSLLSGWIGIRFGRRGGLLMSSICF 95
Query: 83 -----GSALGYLIFGLAGSLWMLF-LGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFG 135
G+AL +FG GS +F R + GL G + TL Y A+I + R ++
Sbjct: 96 VAAGFGAALTEKLFGTGGSALQIFCFFRFLAGLGIGVVSTLTPTYIAEIRPPDKRGQMVS 155
Query: 136 WTAAAVGVGTISGPTVGGLLAHFGN 160
A+ G ++G LLAHFG+
Sbjct: 156 GQQMAIVTGALTGYIFTWLLAHFGS 180
emb|CAB13555| (Z99112) similar to phage-related protein [Bacillus subtilis]
Length = 124
Score = 44.1 bits (102), Expect = 0.002
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSAL 86
PV+P M + Q V+ ++ +Y++ P G LSDRFGRK ILL L + L
Sbjct: 23 PVLPMMEKKLSVTSFQ---VSLIITVYSVVAIICIPIAGYLSDRFGRKKILLPCLLIAGL 79
Query: 87 GYLIFGLAGSLW-----MLFLGRIIDGL 109
G + A + M+ GR++ G+
Sbjct: 80 GGAVAAFASTYMKNPYAMILAGRVLQGI 107
gb|AAF10631.1|AE001956_12 (AE001956) hypothetical protein [Deinococcus radiodurans]
Length = 454
Score = 43.8 bits (101), Expect = 0.003
Identities = 72/311 (23%), Positives = 126/311 (40%), Gaps = 30/311 (9%)
Query: 29 VPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRK-PILLISLAGSALG 87
+P V F A + + L AI A P +G+ SD+ GR+ P L + + + G
Sbjct: 75 MPAHVVGFMGAAHKGTYLGLLGAIGAAIALVVPPLVGAHSDKTGRRLPYLRLGVGINVAG 134
Query: 88 YLIFG-----LAGS--LWMLFLGRIIDGLTGGNIVT--LFAYFADITDEENRTKVFGWTA 138
+ G LAGS W+ LG ++ G N T A + E R + G
Sbjct: 135 LAVMGAAVGLLAGSTGFWVYVLGFVLVQF-GNNYATAPYSALIPQLVPPEQRGRYSGAMG 193
Query: 139 AAVGVGTISGPTVG-GLLAHFGNSVPFYFGALISIANLLYGAFVMNESLPETHRTRNFSL 197
+G + G G + +H+G S+PF L++ L+ + + + +
Sbjct: 194 TLQALGQLLGAAAGVAIGSHYGASLPF---VLMAALLLVAAVITIRGVVEQAEAVAPAAP 250
Query: 198 KQLNPFTQLFQLLRMK--NLNRLLFAGILLWLPNGALQAIISQFSLDSFAW-TPVL-IGL 253
++ P+ +LF K + R+LFA L ++Q + ++ D PV+ L
Sbjct: 251 GEVLPWRELFAYAPFKWVFITRVLFA-----LGQYSVQPFLQFYAGDVLRQKDPVMSSSL 305
Query: 254 AISIMGLMDILTQIFIMPRLLKLANEDKLIRLA-LVCEIIAYLLFALSAFSKMWPFFILA 312
++ + + I++ + + RL +I A V + A LL +F+ F +L
Sbjct: 306 LLACIVIASIISAV-VGGRLSDRIGRKPVIYFAGTVMTVTALLLLVAPSFT----FALLL 360
Query: 313 MFIFAFGDSIF 323
F F G F
Sbjct: 361 AFCFGLGFGAF 371
emb|CAA14548| (AJ235270) PROLINE/BETAINE TRANSPORTER (proP1) [Rickettsia
prowazekii]
Length = 418
Score = 43.8 bits (101), Expect = 0.003
Identities = 61/299 (20%), Positives = 119/299 (39%), Gaps = 60/299 (20%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLIS----- 80
+P++ P + + L V S+ AI L G + DRFGRK L +
Sbjct: 28 APIIGVKFFPNDDVNTSLLHVFSVFAIGYLARPLGGIFFGVIGDRFGRKVALTSALFCMS 87
Query: 81 ----LAGSALGYLIFGLAGSLWMLFLGRIIDGLT-GGNIVTLFAYFADITDEENRTKVFG 135
L G Y G+ ++ M+ + RI+ GL+ GG + ++ + T + R +
Sbjct: 88 APTVLIGILPTYNTIGITATIVMICV-RILQGLSMGGALTGSISFVIEHTSHKYRGFICS 146
Query: 136 WTAAAVGVGTISGPTV---------GGLLAHFGNSVPFYFGALISIANLLYGAFVMNESL 186
+++ G + G V +FG +PF G I ++ AF + ++
Sbjct: 147 IAMSSICSGLLFGSIVFYIVKNMLTASQFDNFGWRIPFLIGVFI-----IFAAFYIKKN- 200
Query: 187 PETHRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAW 246
TH T +F+ +++ ++L + + + II+ W
Sbjct: 201 --THETPSFT--------------NLRDQQKILHSPL--------KKVIINH-------W 229
Query: 247 TPVLIGLAISIMGLMDILTQIFIMPRLLKLA---NEDKLIRLALVCEIIAYLLFALSAF 302
+LI + I+ G + + LK++ E+++ LA +C +I ++ LS +
Sbjct: 230 LDILISIFINAPGSIIFYLATIYLVSFLKISRNFTENEINNLASICYVIMMVVTLLSGY 288
pir||JQ1201 CmlA protein - Pseudomonas sp. plasmid R1033 transposon Tn1696
Length = 419
Score = 43.8 bits (101), Expect = 0.003
Identities = 94/379 (24%), Positives = 148/379 (38%), Gaps = 84/379 (22%)
Query: 27 PVVPFMVAPFANAHD--QALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
P VPFM Q + T L+ I A F G LSDR GR+P+LL G
Sbjct: 35 PAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLF-----GPLSDRLGRRPVLL----GG 85
Query: 85 ALGYLI--FGLA-GSLWMLFLGRIIDGLTGGN--IVTLFAYFADI-TDEENRTKVFGWTA 138
L Y++ GLA S +FLG I G + +V+ FA DI E ++G
Sbjct: 86 GLAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILG 145
Query: 139 AAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESL----PETHRTRN 194
+ + + GP +G L V + G A L G + + PET R
Sbjct: 146 SMLAMVPAVGPLLGAL-------VDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRV 198
Query: 195 FSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLA 254
L+ ++QL LL +K+LN WL A + F F + + GL
Sbjct: 199 AGLQ----WSQL--LLPVKSLN--------FWLYTLCYAAGMGSF----FVFFSIAPGLM 240
Query: 255 ISIMGLMDI----------LTQIF---IMPRLLKLANEDKLIRLALVCEIIAYLLFALSA 301
+ G+ + + +F M R++ ++R+ + C I +L A+
Sbjct: 241 MGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAI-- 298
Query: 302 FSKMWPF-----FILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRV 356
+++W FI M++ G ++ + + + G L+G +T V
Sbjct: 299 -TEIWALQSVLGFIAPMWLVGIG-----------VATAVSVAPNGALRGFDHVAGTVTAV 346
Query: 357 I----GPLIG--GQIYISL 369
G L+G G + ISL
Sbjct: 347 YFCLGGVLLGSIGTLIISL 365
emb|CAA16033| (AL021246) hypothetical protein Rv2456c [Mycobacterium
tuberculosis]
Length = 418
Score = 43.4 bits (100), Expect = 0.004
Identities = 40/154 (25%), Positives = 72/154 (45%), Gaps = 5/154 (3%)
Query: 38 NAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAG-SALGYLIFGLAGS 96
N + +++S + + A +G+ +D +GRKPI L+ A +A G+L S
Sbjct: 252 NRDEGTALMSSCIVAAQVVMVPVAYVVGTRADAWGRKPIFLVGFAVLTARGFLYTLSDNS 311
Query: 97 LWMLFLGRIIDGLTGGNIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA 156
W++ + +++DG+ G LF + D + T F + AV T G + L+A
Sbjct: 312 YWLVGV-QLLDGIGAGIFGALFPLV--VQDVTHGTGHFNISLGAVTTATGIGAALSNLVA 368
Query: 157 HFGNSVPFYFGALISIANLLYGAFVMN-ESLPET 189
+ V Y A +S+ L F++ ++PET
Sbjct: 369 GWIVVVAGYDAAFMSLGALAGAGFLLYLVAMPET 402
emb|CAB07473| (Z92954) product highly similar to metabolite transport proteins
[Bacillus subtilis] >gi|2636109|emb|CAB15600.1| (Z99122)
similar to metabolite transport protein [Bacillus
subtilis]
Length = 457
Score = 43.4 bits (100), Expect = 0.004
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 38 NAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSL 97
NA + L+V+SL+ + + A G L+DRFGRK ++ + +G L LA +
Sbjct: 41 NAFTEGLVVSSLL----VGAILGSGAAGKLTDRFGRKKAIMAAALLFCIGGLGVALAPNT 96
Query: 98 WMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLA 156
++ L RII GL G T+ Y +++ + R + + VG + V + A
Sbjct: 97 GVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSLNQLMITVGILLSYIVNYIFA 156
dbj|BAA15320| (D90801) Bicyclomycin resistance protein (Sulfonamide resistance
protein). [Escherichia coli]
Length = 329
Score = 43.0 bits (99), Expect = 0.005
Identities = 51/205 (24%), Positives = 87/205 (41%), Gaps = 17/205 (8%)
Query: 27 PVVPFMVAPF----ANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLA 82
P++P + F AN+ I T+++AI L T G LSD GRKP+++ +L
Sbjct: 57 PILPVLSQEFGLTPANSSISLSISTAMLAIGLLFT-------GPLSDAIGRKPVMVTALL 109
Query: 83 GSALGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTL-FAYFADITDEENRTKVFGWTAAAV 141
+++ L+ + S + + R + GL+ + + Y ++ G +
Sbjct: 110 LASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAFSMGLYISGN 169
Query: 142 GVGTISGPTVGGLLAHFGNSVPFYFGALISIANL-LYGAFVMNESLPETHRTRNFSLKQL 200
+G +SG + G+ F N + AL +I L A + + LPE+ R SL+
Sbjct: 170 SIGGMSGRLISGVFTDFFN----WRIALAAIGCFALASALMFWKILPESRHFRPTSLRPK 225
Query: 201 NPFTQLFQLLRMKNLNRLLFAGILL 225
F R + L L G LL
Sbjct: 226 TLFINFRLHWRDRGLPLLFAEGFLL 250
emb|CAB72528.1| (AL139074) putative efflux protein [Campylobacter jejuni]
Length = 400
Score = 42.6 bits (98), Expect = 0.006
Identities = 83/380 (21%), Positives = 149/380 (38%), Gaps = 37/380 (9%)
Query: 26 SPVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGS-----LSDRFGRKPILLIS 80
+P+ M P + +Q+ S + ++ +FF A ALG LSD FGRK L+
Sbjct: 26 APLSTDMYLPALSHVEQSFQTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVG 85
Query: 81 LAGSALGYLIFGLAGSLWMLFLGRIIDGLTG-GNIVTLFAYFADITDEENRTKVFGWTAA 139
+ + L + ++ R + L G +V A D+ + + +F
Sbjct: 86 IFFFIVSSLFCVIIDDIYAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMV 145
Query: 140 AVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLY--GAFVMNESLPETHRTRNFSL 197
+ + PT GG+L + S F L ++ LL+ F + ES P + + FS
Sbjct: 146 FSSLAPMLSPTFGGILLEY-FSWHSIFATLFALGILLFLMILFGLKESAPHL-KNKKFSH 203
Query: 198 KQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLAISI 257
+ + F L + L +L A AL A+ + + SF +T L+
Sbjct: 204 HEAMK-SYKFVLSDKRFLVYILCASF-------ALAAMFAYITGSSFVFTQ-FFSLSEQK 254
Query: 258 MGL------MDILTQIFIMPRLLKLANEDKLIRLALVCEIIAYLLFALSAFSKMWPFFIL 311
L + + I RL+ +K++ AL+ I+ ++ ++AF P F+L
Sbjct: 255 FALLFGANALGFVICANINARLVLKYESEKILAKALMIMFISTVILLVNAF--FHPNFLL 312
Query: 312 AMFIFAFGDSIF-GTAFNGKLSKSATSSEQGKLQGGSQALQALTRVIGPLIGGQIYISLG 370
F SIF A G ++ + T+ + + S A+ + G I +G
Sbjct: 313 ------FELSIFTSIAMLGFIAPNTTTLAMARFKEHSGTASAVLGTVQFGFAGLISFVVG 366
Query: 371 HF---APALMGFIFLIIALL 387
P ++ F+ L+
Sbjct: 367 AINANTPIILAFVMCACVLV 386
gi|2315545 (AF016656) Similar to sugar transporter [Caenorhabditis elegans]
Length = 545
Score = 42.6 bits (98), Expect = 0.006
Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 64/344 (18%)
Query: 31 FMVAPFANAHDQALIVTSLMAIYA--LCTFFAAPALGSLS-----DRFGRKPILLISLAG 83
FM A D L +L I++ + F GS S D GRK L IS+A
Sbjct: 41 FMNQTLAKRFDGGLSDNTLQNIWSFVVAILFLGALAGSFSIRLIADWIGRKNGLYISIAV 100
Query: 84 SAL--GYLIFGLAGSLWMLFLG-RIIDGLTGGNIVTLFAYF-ADITDEENRTKVFGWTAA 139
L G I L+ L++ RI+ G + + L A F ++ + ++NR + T
Sbjct: 101 GVLAGGMSIASKFIPLFELYIASRIVMGWSVSVSLGLSALFLSEASPKQNRGAIGMMTGT 160
Query: 140 AVGVGTISGPTVG-------------------GLLAHFGNSVPFY---FGALI----SIA 173
V +GT+ G + G++ FG ++PF+ G LI + A
Sbjct: 161 CVQLGTVCGSVIAMPQIFGTEDLWWLIYATEIGIMLFFGAALPFFPESPGFLIQRGATEA 220
Query: 174 NLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLL---RMKNLNRLLFAGILL-WLPN 229
A+ N + E + N ++ T+ F+++ R K+L F G+++ + +
Sbjct: 221 ATKSIAYYYNCEIDEAEKHLNEIKEEQKNSTKNFKMMDIVRKKSLRDKAFIGVVVTFAMS 280
Query: 230 GALQAIISQFSLDSFAWTPV------LIGLAISIMGLMDILTQIFIMPR-------LLKL 276
+ A+I+ F+ D T + L AIS++ ++ + I+ R L+
Sbjct: 281 FSGVAVINAFAFDILKDTGLKVLEASLANDAISVVSMISSIVAAVIVDRNGRRPLLLISF 340
Query: 277 ANEDKLIRLALVCEIIAY-LLFALSAFSKMWPFFILAMFIFAFG 319
A LVC +I + L+F F W F++ +F+ G
Sbjct: 341 AG-------ILVCNLIIFALMFTFYKFE--WCFYVAKIFLIFLG 375
emb|CAB73495.1| (AL139077) putative transmembrane transport protein [Campylobacter
jejuni]
Length = 399
Score = 42.2 bits (97), Expect = 0.008
Identities = 72/343 (20%), Positives = 131/343 (37%), Gaps = 16/343 (4%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
L +YA+ AP + RF R LLI+L AL I + + ++ R I G
Sbjct: 46 LTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARFIAG 105
Query: 109 LTGG--NIVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFYF 166
G ++ A A IT ++ ++ + V ++G +G + H+ F F
Sbjct: 106 TQHGVFFVIATLAVSA-ITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHY-FGFKFIF 163
Query: 167 GALISIANLLYGAFVMNESLPETHRTRNFSLKQLNPFTQLFQLLRMKNLNRL-LFAGILL 225
+ I +L + F + +P+ +LK L P LL+ + A +L
Sbjct: 164 LLIFIITSLAF--FGVWHMMPKNLHPSPTNLKNLIPAFSHQNLLKTYTITICSCGAQFVL 221
Query: 226 WLPNGALQAIISQFSLDSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDKLIRL 285
+ + IS F + A+ +L G+ L +++ +RL
Sbjct: 222 YTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWG--------GKIVDKKGAIFSLRL 273
Query: 286 ALVCEIIAYLLFALSAFSKMWPFFILAMF-IFAFGDSIFGTAFNGKLSKSATSSEQGKLQ 344
L +++ +L L+ SK+ F +A+ FAF + +K T
Sbjct: 274 ILSIQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTV 333
Query: 345 GGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALL 387
++A + + +GG + LG AL +F+ AL+
Sbjct: 334 SVNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALI 376
emb|CAB46807.1| (AL096811) putative integral membrane transport protein
[Streptomyces coelicolor A3(2)]
Length = 463
Score = 42.2 bits (97), Expect = 0.008
Identities = 82/352 (23%), Positives = 139/352 (39%), Gaps = 31/352 (8%)
Query: 49 LMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGSALGYLIFGLAGSLWMLFLGRIIDG 108
+ +YAL FAA LG +D P+L + A G + G+AGSL + L + G
Sbjct: 48 IAGVYALLPLFAAVPLGRRTDHGRCAPLLPAGVVLIAGGCALSGVAGSLSTMALWSGVMG 107
Query: 109 LTGGN---IVTLFAYFADITDEENRTKVFGWTAAAVGVGTISGPTVGGLLAHFGNSVPFY 165
L G+ ++ + A + + + FG +G + GP G L G +
Sbjct: 108 L--GHLCFVIGAQSLVARQSAPHEQDRNFGHFTIGASLGQLIGPIAAGALIG-GPDMAGS 164
Query: 166 FGALISIANLLYGAFVMNESLPET-HRTRNFSLKQLNPFTQLFQLLRMKNLNRLLFAGIL 224
+ +A GA V SL T H S Q + +LR + + AGIL
Sbjct: 165 SALALVVAGA--GAAVAFTSLWRTEHPGAAKSRAQQGARVPVVSILRARGVP----AGIL 218
Query: 225 LWLPNGALQAIISQFSL---DSFAWTPVLIGLAISIMGLMDILTQIFIMPRLLKLANEDK 281
+ L + I++ + + +P +IG+ +S+ I ++ + P L L +
Sbjct: 219 ISLSVLSATDILTAYLPVVGEQRGISPAVIGVLLSLRAAATIACRLVLTPLLRLLG---R 275
Query: 282 LIRLALVCEIIAYLLFALSAFSKMWPFFILAM---FIFAFGDSIFGTAFNGKLSKSATSS 338
+ L + C + A L ++ +W ++ + F G + T A S+
Sbjct: 276 TVLLTVTCLLAALLCAGVALPVPVWALALMLVVLGFCLGVGQPLSMTTVVQAAPDEARST 335
Query: 339 EQGKLQGGSQALQALTRVIGPLIGGQIYISLGHFAPALMGFIFLIIALLVLS 390
G++ L +V P G I G AP +M + ALL+LS
Sbjct: 336 ALALRLTGNR----LGQVAAPAAAGLIAGVAGVAAPFVM-----LGALLLLS 378
ref|NP_010143.1|RGT2| glucose permease; Rgt2p >gi|2500936|sp|Q12300|RGT2_YEAST
HIGH-AFFINITY GLUCOSE TRANSPORTER RGT2
>gi|2132441|pir||S67684 probable membrane protein
YDL138w - yeast (Saccharomyces cerevisiae)
>gi|1419223|emb|CAA65621| (X96876) RGT2 [Saccharomyces
cerevisiae] >gi|1431213|emb|CAA98711| (Z74186) ORF
YDL138w [Saccharomyces cerevisiae]
Length = 763
Score = 42.2 bits (97), Expect = 0.008
Identities = 34/127 (26%), Positives = 61/127 (47%), Gaps = 3/127 (2%)
Query: 27 PVVPFMVAPFANAHDQALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAG-SA 85
P V +AP +++ + L++ +L TFF A +SD +GRKP ++ S A +
Sbjct: 127 PYVKTYIAP-NHSYFTTSQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFS 185
Query: 86 LGYLIFGLAGSLWMLFLGRIIDGLTGGNIVTLF-AYFADITDEENRTKVFGWTAAAVGVG 144
+G + +G L +L +GR+I G+ G I + Y A+ + R + A+ +G
Sbjct: 186 IGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIG 245
Query: 145 TISGPTV 151
+ V
Sbjct: 246 LLVSSAV 252
sp|P32482|CMLA_PSEAE CHLORAMPHENICOL RESISTANCE PROTEIN >gi|420817|pir||A47033 CmlA -
Pseudomonas aeruginosa >gi|151756 (M64556)
chloramphenicol resistance protein [Plasmid R1033]
>gi|530809|gb|AAB60004.1| (U12338) chloramphenicol
transporter [Pseudomonas aeruginosa]
Length = 419
Score = 42.2 bits (97), Expect = 0.008
Identities = 94/379 (24%), Positives = 147/379 (37%), Gaps = 84/379 (22%)
Query: 27 PVVPFMVAPFANAHD--QALIVTSLMAIYALCTFFAAPALGSLSDRFGRKPILLISLAGS 84
P VPFM Q + T L+ I A F G LSDR GR+P+LL G
Sbjct: 35 PAVPFMPNALGTTASTIQLTLTTYLVMIGAGQLLF-----GPLSDRLGRRPVLL----GG 85
Query: 85 ALGYLI--FGLA-GSLWMLFLGRIIDGLTGGN--IVTLFAYFADI-TDEENRTKVFGWTA 138
L Y++ GLA S +FLG I G + +V+ FA DI E ++G
Sbjct: 86 GLAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFATVRDIYAGREESNVIYGILG 145
Query: 139 AAVGVGTISGPTVGGLLAHFGNSVPFYFGALISIANLLYGAFVMNESL----PETHRTRN 194
+ + + GP +G L V + G A L G + + PET R
Sbjct: 146 SMLAMVPAVGPLLGAL-------VDMWLGWRAIFAFLGLGMIAASAAAWRFWPETRVQRV 198
Query: 195 FSLKQLNPFTQLFQLLRMKNLNRLLFAGILLWLPNGALQAIISQFSLDSFAWTPVLIGLA 254
L+ ++QL LL +K LN WL A + F F + + GL
Sbjct: 199 AGLQ----WSQL--LLPVKCLN--------FWLYTLCYAAGMGSF----FVFFSIAPGLM 240
Query: 255 ISIMGLMDI----------LTQIF---IMPRLLKLANEDKLIRLALVCEIIAYLLFALSA 301
+ G+ + + +F M R++ ++R+ + C I +L A+
Sbjct: 241 MGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAI-- 298
Query: 302 FSKMWPF-----FILAMFIFAFGDSIFGTAFNGKLSKSATSSEQGKLQGGSQALQALTRV 356
+++W FI M++ G ++ + + + G L+G +T V
Sbjct: 299 -TEIWALQSVLGFIAPMWLVGIG-----------VATAVSVAPNGALRGFDHVAGTVTAV 346
Query: 357 I----GPLIG--GQIYISL 369
G L+G G + ISL
Sbjct: 347 YFCLGGVLLGSIGTLIISL 365
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.328 0.143 0.425
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96636479
Number of Sequences: 457798
Number of extensions: 3860385
Number of successful extensions: 14203
Number of sequences better than 1.0e-02: 314
Number of HSP's better than 0.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 245
Number of HSP's that attempted gapping in prelim test: 13629
Number of HSP's gapped (non-prelim): 504
length of query: 397
length of database: 140,871,481
effective HSP length: 52
effective length of query: 345
effective length of database: 117,065,985
effective search space: 40387764825
effective search space used: 40387764825
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 97 (42.2 bits)