BLASTP 2.0.11 [Jan-20-2000]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= dnaE (495 kb forward) BIO10.02
(1060 letters)
457,798 sequences; 140,871,481 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O34623|DP3A_BACSU DNA POLYMERASE III, ALPHA CHAIN >gi|22... 566 e-160
sp|O67125|DP3A_AQUAE DNA POLYMERASE III, ALPHA CHAIN >gi|29... 525 e-148
gb|AAD44403.1| (AF062920) DNA polymerase III [Thermus aquat... 467 e-130
sp|O51526|DP3A_BORBU DNA POLYMERASE III, ALPHA CHAIN >gi|26... 461 e-128
sp|P43743|DP3A_HAEIN DNA POLYMERASE III, ALPHA CHAIN >gi|10... 437 e-121
gb|AAD18805| (AE001649) DNA Polymerase III Alpha [Chlamydia... 434 e-120
sp|O83675|DP3A_TREPA DNA POLYMERASE III, ALPHA CHAIN >gi|33... 414 e-114
sp|P10443|DP3A_ECOLI DNA POLYMERASE III, ALPHA CHAIN >gi|67... 408 e-112
sp|P56157|DP3A_HELPY DNA POLYMERASE III, ALPHA CHAIN >gi|23... 406 e-112
gi|4155965 (AE001558) DNA POLYMERASE III, ALPHA CHAIN [Heli... 405 e-112
emb|CAB39586.1| (AL049478) putative DNA polymerase III alph... 405 e-111
sp|P52022|DP3A_VIBCH DNA POLYMERASE III, ALPHA CHAIN >gi|94... 405 e-111
gb|AAD44402.1|AF062919_1 (AF062919) DNA polymerase III [Pse... 404 e-111
gb|AAF30826.1|AE002138_13 (AE002138) DNA polymerase III alp... 402 e-111
emb|CAB72992.1| (AL139076) DNA polymerase III, alpha chain ... 402 e-111
gb|AAC68147.1| (AE001325) DNA Pol III Alpha [Chlamydia trac... 401 e-110
sp|P14567|DP3A_SALTY DNA POLYMERASE III, ALPHA CHAIN >gi|48... 397 e-109
gb|AAD16978| (AF108191) DNA polymerase III alpha subunit [S... 394 e-108
gi|154271 (M26046) DNA polymerase III alpha subunit [Salmon... 394 e-108
gb|AAF10085.1|AE001909_7 (AE001909) DNA polymerase III, alp... 390 e-107
sp|O05974|DP3A_RICPR DNA POLYMERASE III, ALPHA CHAIN >gi|38... 381 e-104
sp|Q10779|DP3A_MYCTU PROBABLE DNA POLYMERASE III, ALPHA CHA... 381 e-104
emb|CAA72479| (Y11785) DNA polymerase III alpha subunit [Ri... 354 2e-96
sp|P74750|DP3A_SYNY3 DNA POLYMERASE III, ALPHA CHAIN >gi|16... 336 5e-91
sp|Q49405|DP3A_MYCGE DNA POLYMERASE III, ALPHA CHAIN >gi|13... 331 2e-89
sp|P75404|DP3A_MYCPN DNA POLYMERASE III, ALPHA CHAIN >gi|21... 320 4e-86
emb|CAB50954.1| (AL096849) putative DNA polymerase III, alp... 280 3e-74
gi|3883104 (AF074611) putative DNA polymerase III , alpha s... 276 8e-73
emb|CAA15755| (AL009198) dnaE2 [Mycobacterium tuberculosis] 273 7e-72
gi|2996335 (AF053947) DNA polymerase III alpha subunit homo... 270 6e-71
gb|AAD35546.1|AE001724_4 (AE001724) DNA polymerase III, alp... 250 3e-65
gi|3930523 (AF063188) DNA polymerase III [Thermotoga maritima] 249 7e-65
emb|CAB13926| (Z99114) similar to DNA polymerase III (alpha... 161 2e-38
emb|CAA83754| (Z33091) DNA Polymerase III (alpha) [Mycoplas... 150 6e-35
dbj|BAA17242| (D90904) DNA polymerase III alpha subunit [Sy... 105 2e-21
sp|Q9ZHF6|DPO3_THEMA DNA POLYMERASE III, ALPHA CHAIN POLC-T... 91 5e-17
gb|AAD23482.1|AF117853_1 (AF117853) DNA polymerase III holo... 88 4e-16
pir||JH0232 DNA-directed DNA polymerase (EC 2.7.7.7) III al... 77 6e-13
pir||A33920 DNA-directed DNA polymerase (EC 2.7.7.7) III al... 77 8e-13
sp|P47729|DPO3_MYCPU DNA POLYMERASE III, ALPHA CHAIN POLC-T... 76 1e-12
sp|P47277|DPO3_MYCGE DNA POLYMERASE III, ALPHA CHAIN POLC-T... 76 1e-12
sp|P13267|DPO3_BACSU DNA POLYMERASE III, ALPHA CHAIN POLC-T... 76 1e-12
gi|143342 (M22996) polymerase III [Bacillus subtilis] 76 2e-12
sp|Q53665|DPO3_STAAU DNA POLYMERASE III, ALPHA CHAIN POLC-T... 71 4e-11
sp|P75080|DPO3_MYCPN DNA POLYMERASE III, ALPHA CHAIN POLC-T... 64 5e-09
pir||S52267 DNA polymerase III - Staphylococcus aureus >gi|... 64 8e-09
sp|P34699|DP3A_SACER DNA POLYMERASE III, ALPHA CHAIN >gi|28... 48 4e-04
gb|AAD43766.1|AF152505_1 (AF152505) protocadherin gamma A11... 48 5e-04
gb|AAD43765.1|AF152504_1 (AF152504) protocadherin gamma A11... 48 5e-04
gb|AAD43714.1| (AF152320) protocadherin gamma A11 [Homo sap... 48 5e-04
gi|3676693 (AF083949) DNA polymerase; DnaE [Treponema denti... 46 0.002
emb|CAB56071.1| (AJ238763) DNA polymerase III alpha subunit... 45 0.004
sp|O34623|DP3A_BACSU DNA POLYMERASE III, ALPHA CHAIN >gi|2293260 (AF008220) DNA-polymerase
III alpha-chain [Bacillus subtilis]
>gi|2635388|emb|CAB14883| (Z99118) DNA polymerase III
(alpha subunit) [Bacillus subtilis]
Length = 1115
Score = 566 bits (1443), Expect = e-160
Identities = 369/1101 (33%), Positives = 568/1101 (51%), Gaps = 86/1101 (7%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L + YS L+S V++ + A RLGY ++ + D ++ A +F + + + PI
Sbjct: 3 FVHLQVHSGYSLLNSAAAVEELVSEADRLGYASLALTDDHVMYGAIQFYKACKARGINPI 62
Query: 62 ISIELNF-----EWRGLPIAFSFIAKDTEGYKNLLRISTL---HNYGRRQFSDIQNHLSG 113
I + + E P+ +AK GY+NLL+IS++ + G + + ++ G
Sbjct: 63 IGLTASVFTDDSELEAYPLVL--LAKSNTGYQNLLKISSVLQSKSKGGLKPKWLHSYREG 120
Query: 114 IALIIPETYGSLSELTE--LSSVADEAFIGIDQLTDKGAKF------------------- 152
I I P G + L E L A +A + + KGA +
Sbjct: 121 IIAITPGEKGYIETLLEGGLFEQAAQASLEFQSIFGKGAFYFSYQPFKGNQVLSEQILKL 180
Query: 153 ----NLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFL 208
+P + Y+ D L A++ G ++ +L +P
Sbjct: 181 SEETGIPVTATGDVHYIRKEDKAAYRCLKAIKAGEKLTDAPAEDLPDLDLKPLEEMQNIY 240
Query: 209 KYFPQALKNLSALTAKIAYQFD-EKLELPRFDKK--RQAVEHLREEATLGLSARLEEKNL 265
+ P+AL+ + + + LP F A ++L + GL +R + +
Sbjct: 241 REHPEALQASVEIAEQCRVDVSLGQTRLPSFPTPDGTSADDYLTDICMEGLRSRFGKPD- 299
Query: 266 LTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAA 325
Y RL+ EL VI +M F DYFLIV D +++A E+ I G GRGSAA
Sbjct: 300 ------------ERYLRRLQYELDVIKRMKFSDYFLIVWDFMKHAHEKGIVTGPGRGSAA 347
Query: 326 GSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDH 385
GSLVAYVL IT VDP++H+L FERFLNPERV E++ Y++ +YG+ H
Sbjct: 348 GSLVAYVLYITDVDPIKHHLLFERFLNPERVSMPDIDIDFPDTRRDEVIQYVQQKYGAMH 407
Query: 386 VAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEY-ENNQRFKAEVL 444
VAQI+TF TL + ALRDVG+ FG++ E L +++ R G DE + + + +
Sbjct: 408 VAQIITFGTLAAKAALRDVGRVFGVSPKEADQLAKLIPSRPGMTLDEARQQSPQLDKRLR 467
Query: 445 KNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPS-EDLALTQYEAPDVE 503
++ L+++Y +AR+IEG+PR STHA+GVVLSEE L + V L+ E + LTQY +E
Sbjct: 468 ESSLLQQVYSIARKIEGLPRHASTHAAGVVLSEEPLTDVVPLQEGHEGIYLTQYAMDHLE 527
Query: 504 AIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQF 563
+GLLK+DFLGLRNLT+I + ++++ + I ID I+ D+ T +L G+T GIFQ
Sbjct: 528 DLGLLKMDFLGLRNLTLIESITSMIEKEENIKIDLSSISYSDDKTFSLLSKGDTTGIFQL 587
Query: 564 ENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILK 623
E+ MR L+ L PS +DIV +++RPGP + IP F+ R+HG+ V + + IL+
Sbjct: 588 ESAGMRSVLKRLKPSGLEDIVAVNALYRPGPMENIPLFIDRKHGRAPVHYPHEDLRSILE 647
Query: 624 PTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSK 683
TYG+++YQEQIM +A AGFSLG+ADLLRRA+SKKK L++ R F++ +S
Sbjct: 648 DTYGVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILDRERSHFVEGCLKKEYSV 707
Query: 684 EKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFY-----EIQLRDRKRE 738
+ A E+YDLI +FANYGFNRSH AY + Q+AY KAH+P F + + K
Sbjct: 708 DTANEVYDLIVKFANYGFNRSHAVAYSMIGCQLAYLKAHYPLYFMCGLLTSVIGNEDKIS 767
Query: 739 VMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIV---ENQPYK 795
+ +A +G I PS+N V+N +R L ++ + K I + +P++
Sbjct: 768 QYLYEAKGSGIRILPPSVNKSSFPFTVENGSVRYSLRAIKSVGVSAVKDIYKARKEKPFE 827
Query: 796 DLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNL---ADHANL-------LN 845
DL DF ++P+ ++ + LI GA D NR L ++ +HA L +
Sbjct: 828 DLFDFCFRVPSKSVNRKMLEALIFSGAMDEFGQNRATLLASIDVALEHAELFAADDDQMG 887
Query: 846 YYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRF--EGNFTP 903
+ D+ F Y E E+ + FEK LGI + HPL ++ +G +
Sbjct: 888 LFLDESFSIKP----KYVETEELPLVDLLAFEKETLGIYFSNHPLSAFRKQLTAQGAVSI 943
Query: 904 L-AQLVKNRRMTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQFSGELE 962
L AQ R++++ V ++ I+T RTKTGQ MAFLT+SD + +FPE +RQ S L
Sbjct: 944 LQAQRAVKRQLSLGVLLSKIKTIRTKTGQNMAFLTLSDETGEMEAVVFPEQFRQLSPVLR 1003
Query: 963 QGKFYLISGKVTERNDELQLVTDRISPALETDRK----LWLNLRDDKYNQ----KISQIL 1014
+G +GK R D++Q + R + D + +++ + +++Q KI +IL
Sbjct: 1004 EGALLFTAGKCEVRQDKIQFIMSRAELLEDMDAEKAPSVYIKIESSQHSQEILAKIKRIL 1063
Query: 1015 REFPGSHQVILHYSNLKKTIQ 1035
E G V L+Y K+TI+
Sbjct: 1064 LEHKGETGVYLYYERQKQTIK 1084
sp|O67125|DP3A_AQUAE DNA POLYMERASE III, ALPHA CHAIN >gi|2983510 (AE000718) DNA polymerase
III alpha subunit [Aquifex aeolicus]
Length = 1161
Score = 525 bits (1339), Expect = e-148
Identities = 330/1075 (30%), Positives = 554/1075 (50%), Gaps = 119/1075 (11%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ T++S LD +K+D+ ++ A GY+ VG+ D GNL +++F + + ++PI
Sbjct: 5 FVHLHLHTQFSLLDGAIKIDELVKKAKEYGYKAVGMSDHGNLFGSYKFYKALKAEGIKPI 64
Query: 62 ISIELNFEWRG----------------LPIAFSFIAKDTEGYKNLLRISTL------HNY 99
I +E F IAKD +G KNL+++STL +
Sbjct: 65 IGMEAYFTTGSRFDRKTKTSEDNITDKYNHHLILIAKDDKGLKNLMKLSTLAYKEGFYYK 124
Query: 100 GRRQFSDIQNHLSGIALI------IPETYGSLSELTELSS--------VADEAFIGID-- 143
R + ++ + G+ + +P Y S++E+ + D+ ++ +
Sbjct: 125 PRIDYELLEKYGEGLIALTACLKGVPTYYASINEVKKAEEWVKKFKDIFGDDLYLELQAN 184
Query: 144 ----------QLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDE----SL 189
L + K+++ + YLN D +L A++ + E +
Sbjct: 185 NIPEQEVANRNLIEIAKKYDVKLIATQDAHYLNPEDRYAHTVLMALQMKKTIHELSSGNF 244
Query: 190 TISSNELLQRPEAY--ETYFLKY--FPQALKNLSALTAKIAYQFD----EKLELPRFD-- 239
S+ +L P Y + + K+ + +AL N + K A F+ LP++D
Sbjct: 245 KCSNEDLHFAPPEYMWKKFEGKFEGWEKALLNTLEVMEKTADSFEIFENSTYLLPKYDVP 304
Query: 240 KKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDY 299
+ E+LRE A GL R+E +D Y ERLE EL VI++MGF Y
Sbjct: 305 PDKTLEEYLRELAYKGLRQRIERGQA---------KDTKEYWERLEYELEVINKMGFAGY 355
Query: 300 FLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXX 359
FLIV D + +A++ DI G GRGSA GSLVAY +GIT VDP++H FERFLNPERV
Sbjct: 356 FLIVQDFINWAKKNDIPVGPGRGSAGGSLVAYAIGITDVDPIKHGFLFERFLNPERVSMP 415
Query: 360 XXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLT 419
+++ Y++N+YG D+VAQI+T++ + +Q LRDV +A G+ + L
Sbjct: 416 DIDVDFCQDNREKVIEYVRNKYGHDNVAQIITYNVMKAKQTLRDVARAMGLPYSTADKLA 475
Query: 420 RM-----------------------LVRRFGTLADEYENN-QRFKAEVLKNGKLKRIYEV 455
++ L++++G + E+N ++F+ ++ ++K++ E
Sbjct: 476 KLIPQGDVQGTWLSLEEMYKTPVEELLQKYGEHRTDIEDNVKKFRQICEESPEIKQLVET 535
Query: 456 ARRIEGMPRQTSTHASGVVLSEESLVNYVSLK-PSEDLALTQYEAPDVEAIGLLKIDFLG 514
A ++EG+ R TS HA+GVV++ + L V L E TQY+ +E +GLLK+DFLG
Sbjct: 536 ALKLEGLTRHTSLHAAGVVIAPKPLSELVPLYYDKEGEVATQYDMVQLEELGLLKMDFLG 595
Query: 515 LRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRN 574
L+ LT + +++L+K R +DI+ L++ L+D L + G T G+FQ E+ M+ L+
Sbjct: 596 LKTLTELKLMKELIKERHGVDINFLELPLDDPKVYKLLQEGKTTGVFQLESRGMKELLKK 655
Query: 575 LAPSKFDDIVDATSIFRPGP--SQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQ 632
L P FDDIV +++RPGP S + ++ R+HGKE V + +LK TYG+++YQ
Sbjct: 656 LKPDSFDDIVAVLALYRPGPLKSGLVDTYIKRKHGKEPVEYPFPELEPVLKETYGVIVYQ 715
Query: 633 EQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDL 692
EQ+M+++Q +GF+ G+AD LR+AI KKK + ++++ F+ A G+ +EK ++++
Sbjct: 716 EQVMKMSQILSGFTPGEADTLRKAIGKKKADLMAQMKDKFIQGAVERGYPEEKIRKLWED 775
Query: 693 IERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKREVMILDALEN----G 748
IE+FA+Y FN+SH AYG +++ AY KAH+P EF+ ++L K + L+ +++ G
Sbjct: 776 IEKFASYSFNKSHSVAYGYISYWTAYVKAHYPAEFFAVKLTTEKNDNKFLNLIKDAKLFG 835
Query: 749 FEIEKPSINLMKIGDFVKNK-KIRLGLAHVQGISRDLAKWIVE----NQPYKDLADFVEK 803
FEI P IN +G ++ + +IR GLA ++G+ + AK IVE + +K LADF+ K
Sbjct: 836 FEILPPDINKSDVGFTIEGENRIRFGLARIKGVGEETAKIIVEARKKYKQFKGLADFINK 895
Query: 804 LPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHANLLNYYSDDIFMASSGGGFAYH 863
N K+ + L++ GAFD+ R +L +A+ L + +F A
Sbjct: 896 TKNRKINKKVVEALVKAGAFDFTKKKRKELLAKVANSEKALMATQNSLFGAPK------- 948
Query: 864 EAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQLV---KNRRMTILVEIN 920
E+ E + EK +LG ++ HPL N + + +TP+ L K + I
Sbjct: 949 --EEVEELDPLKLEKEVLGFYISGHPLDNYEKLLKNRYTPIEDLEEWDKESEAVLTGVIT 1006
Query: 921 YIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVTE 975
++ +TK G MA + D + +FP +Y + +E+ + ++ G + E
Sbjct: 1007 ELKVKKTKNGDYMAVFNLVDKTGLIECVVFPGVYEEAKELIEEDRVVVVKGFLDE 1061
gb|AAD44403.1| (AF062920) DNA polymerase III [Thermus aquaticus]
Length = 1220
Score = 467 bits (1188), Expect = e-130
Identities = 366/1171 (31%), Positives = 557/1171 (47%), Gaps = 161/1171 (13%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQ--TVGICDVGNLHAAFRFVRKAQKFNLQ 59
FA L+ T++S LD K+ D L+ + + + D GNL A F +KA ++
Sbjct: 7 FAHLHQHTQFSLLDGAAKLQDLLKWVKETTPEDPALAMTDHGNLFGAVEFYKKATAMGVK 66
Query: 60 PIISIELNF---------EWRGLPIAF---SFIAKDTEGYKNLLRIST---LHNYGRRQF 104
PII E +GL + + +AKD GY+NL+R+++ L + +
Sbjct: 67 PIIGYEAYVAAESRFDRKRGKGLDGGYFHLTLLAKDFTGYQNLVRLASRAYLEGFYEKPR 126
Query: 105 SD---IQNHLSGIALI-------IPE---------TYGSLSELTELSSVADEAFIGIDQL 145
D ++ H G+ + IP+ L+E +LS D FI I
Sbjct: 127 IDREILREHAQGLIALSGCLGAEIPQFILQDRLDLAEARLNE--DLSIFGDRFFIEIQN- 183
Query: 146 TDKGAKFNLPTLPFPAIRYLNFADNEILAIL-----HAVR--DGVSFDESLTISSNELLQ 198
LP FA L ++ H VR D + + L I S L
Sbjct: 184 ------HGLPEQKKVNQVLKEFARKYGLGMVATNDGHYVRKEDARAHEVLLAIQSKTTLD 237
Query: 199 RPEAYETYFLKYFPQALKNLSAL-------------TAKIAYQFDEKL--------ELPR 237
PE + +++ + + + A+ T +IA D L +PR
Sbjct: 238 DPERWRFPCDEFYVKTPEEMRAMLPEAEWGDEPFDNTVEIARMCDVDLPIGDKMVYRIPR 297
Query: 238 FD--KKRQAVEHLREEATLGLS-----------------------------------ARL 260
F + R ++LRE LGL AR+
Sbjct: 298 FPLPEGRTEAQYLRELTFLGLLRRYPDRITEAFYREVLRLLGTMPPHGDERALAEALARV 357
Query: 261 EEK------NLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQD 314
EEK L + V R ELSVI +MGF YFLIV D + +AR
Sbjct: 358 EEKAWEELRKRLPPLEGVREWTAEAILHRALYELSVIERMGFPGYFLIVQDYINWARGHG 417
Query: 315 IYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELL 374
+ G GRGSAAGSLVAY +GIT +DP++ L FERFLNPERV ++
Sbjct: 418 VSVGPGRGSAAGSLVAYAVGITNIDPLRFGLLFERFLNPERVSMPDIDTDFSDRERDRVI 477
Query: 375 AYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG---TLAD 431
Y++ RYG D VAQI TF +L + AL+DV + +G+ + L +++ +FG L +
Sbjct: 478 QYVRERYGEDKVAQIGTFGSLASKAALKDVARVYGIPHKKAEELAKLIPVQFGKPKPLQE 537
Query: 432 EYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL-KPSE 490
+ +AE+ K+ +++++ EVA R+EG+ R S HA+GVV++ E L + V L + E
Sbjct: 538 AIQVVPELRAEMEKDERIRQVIEVAMRLEGLNRHASVHAAGVVIAAEPLTDLVPLMRDQE 597
Query: 491 DLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLA 550
+TQY+ VEA+GLLK+DFLGLR LT + R +VK + +++D ++ L+D T
Sbjct: 598 GRPVTQYDMGAVEALGLLKMDFLGLRTLTFLDEARRIVKESKGVELDYDRLPLDDPKTFE 657
Query: 551 LFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEI 610
L G T G+FQ E+ M +R L P + +DI+ S++RPGP + IP ++ R HG+E
Sbjct: 658 LLSRGETKGVFQLESGGMTATVRGLKPRRLEDIIALVSLYRPGPMEHIPTYIRRHHGQEP 717
Query: 611 V-----PTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSEL 665
V P + + IL TYGI +YQEQIMQ+A AG+SLG+ADLLRRA+ KK+ E+
Sbjct: 718 VSYAEFPHAEKYLRPILDETYGIPVYQEQIMQIASQVAGYSLGEADLLRRAMGKKRVEEM 777
Query: 666 EKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPD 725
+K RE F+ A G +E+A ++D++E FANYGFN+SH AY L++Q AY KAH+P
Sbjct: 778 QKHRERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPV 837
Query: 726 EFYEIQLRDRKRE-----VMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGI 780
EF L + + I DA G + P +N V ++I GL+ V+ +
Sbjct: 838 EFMAALLSVERHDSDKVAEYIRDARALGIPVLPPDVNRSGFDFKVVGEEILFGLSAVKNV 897
Query: 781 SRDLAKWIVENQ----PYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYN 836
A+ I+E + P+K L DF+++LP K + L++ GA D A +R +L
Sbjct: 898 GEMAARAILEERERGGPFKSLGDFLKRLPEQVVNKRALESLVKAGALD-AFGDRARL--- 953
Query: 837 LADHANLLNYYSDDIFMASSG--GGFAYHEAEDYSETEKYD------FEKNLLGIGVTPH 888
LA LL + ++ SG G FA E E D +EK LGI V+ H
Sbjct: 954 LASLEPLLRWAAETRERGRSGLVGLFAEVEEPPLVEASPLDEITMLRYEKEALGIYVSGH 1013
Query: 889 PL---QNLARRFEGNFTPLAQLVK----NRRMTILVEINYIRTHRTKTGQTMAFLTVSDS 941
P+ L L++ V+ ++ + + + T++G MA T+SD
Sbjct: 1014 PVLRYPGLREVASCTIEELSEFVRELPGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDE 1073
Query: 942 RENFDVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRI---SPALETDRKLW 998
+V +F Y S +L++ L+ +V E+ +EL+++ + LE + L
Sbjct: 1074 TGALEVVVFGRAYEGVSPKLKEDIPLLVLAEV-EKGEELRVLAQAVWTLEEVLEAPKALE 1132
Query: 999 LN----LRDDKYNQKISQILREFPGSHQVIL 1025
+ L D+K ++ +L E PGS V L
Sbjct: 1133 VEVDHALLDEKGVARLKSLLDEHPGSLPVYL 1163
sp|O51526|DP3A_BORBU DNA POLYMERASE III, ALPHA CHAIN >gi|2688500 (AE001159) DNA polymerase
III, subunit alpha (dnaE) [Borrelia burgdorferi]
Length = 1161
Score = 461 bits (1173), Expect = e-128
Identities = 324/1076 (30%), Positives = 522/1076 (48%), Gaps = 116/1076 (10%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ ++YS LD K+ D + A + + + D GNL A +F ++A+K ++PI
Sbjct: 21 FIHLHVHSDYSLLDGAAKISDIISKAKKCNMSHIALTDHGNLFGAIKFYKEAKKAGIKPI 80
Query: 62 ISIELNF-----------EWRGLPIAFSFIAKDTEGYKNLLRISTL------HNYGRRQF 104
I IE + + +AK+ GYKNLL+++++ + R
Sbjct: 81 IGIEAYMAKTSKFLKKQDDLGKMSYHLILLAKNELGYKNLLKLTSISYLEGFYYRPRIDK 140
Query: 105 SDIQNHLSGIA------------LIIPETY-GSLSELTELSSVADEAFI------GI--- 142
D++ + G+ LI+ + + +E+ V F GI
Sbjct: 141 DDLEKYSEGLICTSACIGGLIPRLILANRFEDAKNEILWFKKVFGNDFYLELQRHGIKDQ 200
Query: 143 ----DQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGV--SFDESLTISSNEL 196
++L + +P Y+N D I+ + G S + L + +NE
Sbjct: 201 DIVNERLVKYSRELGVPLTAANDSHYVNREDATAQDIIVCIGTGAKKSDENRLKMETNEF 260
Query: 197 LQRPEAYETYFLKYFPQALKNLSALTAKIAYQFDE-KLELP-----------RFDKKRQA 244
+ + P+AL+N T +IA + D+ K+ P F+ +
Sbjct: 261 YIKSQEEMCELFNDLPEALEN----TVRIAEKCDDFKITFPGPILPDYQIPVEFNTLGEY 316
Query: 245 VEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVA 304
+EHL E GL R KNL +++ ++R ELSVI MGF+ YFLIV
Sbjct: 317 LEHLTLE---GLKFRY--KNLTSKI-----------KDRAFYELSVIIGMGFEGYFLIVW 360
Query: 305 DLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXX 364
D +++A + DI G GRGS AGS+VAY L IT +DP+++NL FERFLNPER+
Sbjct: 361 DFIKFAHDNDIPVGAGRGSGAGSIVAYALRITDIDPLKYNLLFERFLNPERISMPDFDID 420
Query: 365 XXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVR 424
E++ Y+ N+YG D VAQI+TF TL + ++DV + + AE + LT+ +
Sbjct: 421 FCFEGRDEIIKYVTNKYGEDKVAQIITFGTLKPKAVVKDVARVLDIPFAESNELTKFIPD 480
Query: 425 RFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYV 484
E ++ K K + A +EGM R STHA+G+V+S+ L +YV
Sbjct: 481 GPKVSLKEVLDDNSLKECFTSKPVYKELMNAALVLEGMNRHASTHAAGIVISKTPLTDYV 540
Query: 485 SLKPS--EDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKIN 542
L + TQY +E GL+K+DFLGL+ LT+I +L++ ++ D N
Sbjct: 541 PLYKDYKQGSVSTQYTMDLLEECGLVKMDFLGLKTLTLIKNAENLIR---SVNPDFKIKN 597
Query: 543 LEDED--TLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQ 600
+ D D T + G + +FQFE+ M++ L++ P +D++ +++RPGP QFIPQ
Sbjct: 598 IPDNDVKTFNMLGEGRSASVFQFESEGMQQILKDAKPDSIEDLIALNALYRPGPMQFIPQ 657
Query: 601 FVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKK 660
F+A + G + + + E+L+PTYG+++YQEQ+M+VA+ GFSLGKAD+LRRA+ KK
Sbjct: 658 FIAAKKGVKRIKYPHPDLKEVLRPTYGVIVYQEQVMEVAKIIGGFSLGKADILRRAMGKK 717
Query: 661 KGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFK 720
K E+ +++ DFL A G+ KE A EI++L++ F+ YGFN+SH AY +A+Q AY K
Sbjct: 718 KEDEMNEMKVDFLRGAIEKGYDKEIASEIFELLKPFSGYGFNKSHAAAYSLIAYQTAYLK 777
Query: 721 AHFPDEFYEIQLRDR-----KREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLA 775
A++P+ F L + K I ++ G + KP IN V + I GL
Sbjct: 778 ANYPEYFMAANLTNEINNNDKLSYYIEESKAIGINVLKPDINRSFREFRVTDSGISYGLN 837
Query: 776 HVQGISRDLAKWIVE----NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRG 831
++ + + I++ N Y DF+ ++ + K+ + I+ G FD D NR
Sbjct: 838 GIKNLGGIVVDLIIDEREKNGKYSSFEDFIRRVDDKVINKKFLESAIKSGLFDSLDQNRK 897
Query: 832 KLAYNLADHANLLNYYSDD----------IFMASSG-----GGFAYHEAEDYSETEKYDF 876
L NL DH L+ S+D +F A F Y ++YS +E F
Sbjct: 898 TLFENL-DH--LIEVVSEDKNNKKLGQNSLFGALESQDPIQQSFNYQTFKEYSYSELLGF 954
Query: 877 EKNLLGIGVTPHPLQNLARRFE--GNFTPLAQLVKNRRMTILVE--INYIRTHRTKTGQT 932
EK LLG V+ HPL + + + L L + + +N ++ +TK
Sbjct: 955 EKELLGFYVSGHPLDPYKKAIDSFSSLNVLTDLAAKKDSIVQFSGILNSVKVIQTKRNNA 1014
Query: 933 -MAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRI 987
MAF + D + D+ +F E Y ++ L +G + G++T D+ +V +++
Sbjct: 1015 KMAFGVIEDFKGAIDIVVFTESYERYRNFLLEGNVIGVVGRLTFNRDKFSIVVEKV 1070
sp|P43743|DP3A_HAEIN DNA POLYMERASE III, ALPHA CHAIN >gi|1074030|pir||H64089 DNA
polymerase III, alpha chain (dnaE) homolog - Haemophilus
influenzae (strain Rd KW20) >gi|1573746 (U32757) DNA
polymerase III, alpha subunit (dnaE) [Haemophilus
influenzae Rd]
Length = 1159
Score = 437 bits (1112), Expect = e-121
Identities = 323/1064 (30%), Positives = 512/1064 (47%), Gaps = 107/1064 (10%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L T T++S +DS+VKV ++ +G+ D N F + ++PI
Sbjct: 7 FIHLRTHTDFSMIDSIVKVKPLVKACAANEMVAMGLTDFTNFCGVVSFYSEMLSSGMKPI 66
Query: 62 ISIELNFEWRGLPIA------FSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQN----- 109
I ++ + P+ + +AK+ EGY+N+ L +S + G I
Sbjct: 67 IGADVKVK---SPLCGDEYFDLTLLAKNNEGYRNITLLLSKAYQRGYNDLPYIDQDWLIE 123
Query: 110 HLSGIALIIPETYGSLSE------LTELSSV--------ADEAFIGIDQL---------- 145
H G+ ++ T G + + + E+ S AD ++ + +
Sbjct: 124 HRDGVIILSGGTQGDVGKKLLKENVAEIESAVAFYQEFFADHFYLALSRTGRPNEERYIQ 183
Query: 146 --TDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAY 203
+ +LP + + +LN D E I A+ DG + D+ +RP+ Y
Sbjct: 184 AALKLAERCDLPLVATNDVMFLNTEDFEAHEIRVAIHDGYTLDDP---------KRPKCY 234
Query: 204 --ETYF------LKYF---PQALKN--LSALTAKIAYQFDEKLELPRFDKKRQAVEH-LR 249
+ YF K F P AL+N L A + + + LP+F + E L
Sbjct: 235 TSQQYFRSEEDMCKLFADIPSALENTLLIAQRCSVTLRLGQYF-LPQFPTGDLSTEDFLV 293
Query: 250 EEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRY 309
+++ GL RL L V L+ Y ERL+ EL VI+QMGF YFLIV + +++
Sbjct: 294 QKSKEGLEERLV---FLFPDEKVRLEKRPKYDERLQVELDVINQMGFPGYFLIVMEFIQW 350
Query: 310 AREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXX 369
+++ DI G GRGS AGSLVAY L IT +DP++ +L FERFLNPERV
Sbjct: 351 SKDNDIPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDG 410
Query: 370 XXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-T 428
++ ++ YG V+QI+TF T+ + +RDVG+ G + +++++ G T
Sbjct: 411 RDRVIEHVAETYGRGAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMT 470
Query: 429 LADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLK- 487
LA +E + + + +++ + +AR++EG+ R HA GVV+S + ++ L
Sbjct: 471 LAKAFETEPQLQTAYDSDEEVRALINMARKLEGVTRNAGKHAGGVVISPTLITDFAPLYC 530
Query: 488 PSEDL-ALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVK----RRQKIDIDPLKIN 542
+E L +T ++ DVE GL+K DFLGLR LTII D++ R K +D I
Sbjct: 531 DNEGLHPVTHFDKNDVEYAGLVKFDFLGLRTLTIIKWALDIINVRMVREGKPRVDIAAIP 590
Query: 543 LEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--FIPQ 600
L+D ++ L + T +FQ E+ M+ ++ L P F+DI+ ++FRPGP Q +
Sbjct: 591 LDDPESFELLKRSETTAVFQLESRGMKDLIKRLQPDCFEDIIALVALFRPGPLQSGMVDN 650
Query: 601 FVARRHGKEIVPTVDD-----SISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRR 655
F+ R+HG+E V D S+ IL+PTYGI++YQEQ+MQ+AQ AG++LG ADLLRR
Sbjct: 651 FIDRKHGREEVSYPDAEYQHASLKPILEPTYGIILYQEQVMQIAQVLAGYTLGGADLLRR 710
Query: 656 AISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQ 715
A+ KKK E+ K R F + A NG E + +I+DL+E+FA YGFN+SH AY +++Q
Sbjct: 711 AMGKKKPEEMAKQRLVFKEGAEKNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQ 770
Query: 716 IAYFKAHFPDEFYEIQL---RDRKREVMIL--DALENGFEIEKPSINLMKIGDFVKNK-K 769
+ K HFP EF + D +++ L + L G ++ P IN+ K V + +
Sbjct: 771 TLWLKTHFPAEFMAAVMTSEMDNTDKIVGLYDECLRMGLKVTPPDINIGKHHFSVNEQGE 830
Query: 770 IRLGLAHVQGISRDLAKWIV----ENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDY 825
I G+ ++G+ + +V E +KDL D ++ + LI GAFD
Sbjct: 831 IVYGIGAIKGVGEGPIEALVAARNEGGIFKDLFDLCARVDLKKINRRTFESLIMSGAFDK 890
Query: 826 ADSNRGKLAYNLADHANLLNYYSDDIFMASS-----------GGGFAYHEAEDYSETEKY 874
+R L+ NL D + ++ D M + AY Y+E +
Sbjct: 891 LGPHRAALSKNLEDALRASDQHAKDEAMGQTDMFGVLTETHEDVENAYANTPPYTEKQIL 950
Query: 875 DFEKNLLGIGVTPHPLQNLARRFEG-NFTPLAQLVKNRRMTILVEINYI---RTHRTKTG 930
D E+ LG+ ++ HP+ + T L L NRR I + R TK G
Sbjct: 951 DGERETLGLYLSSHPVSRYLKELSHYTSTRLKDLAPNRRGQISTVAGLVVASRIAMTKKG 1010
Query: 931 QTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974
+ T+ D D+TLF E QF +L++ + SG+V+
Sbjct: 1011 NRLGIATLDDRSGRLDLTLFGESLEQFGEKLQKDTVIVASGQVS 1054
gb|AAD18805| (AE001649) DNA Polymerase III Alpha [Chlamydia pneumoniae]
Length = 1240
Score = 434 bits (1103), Expect = e-120
Identities = 318/1103 (28%), Positives = 531/1103 (47%), Gaps = 129/1103 (11%)
Query: 4 PLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPIIS 63
PL+ ++YS LD++ + D++ G + + D GNL+ A F ++ + +QPII
Sbjct: 5 PLHCHSQYSVLDAMSSIKDFVAKGQEFGIPALALTDHGNLYGAVDFYKECTQKGIQPIIG 64
Query: 64 IELNF----------EWRGLPIA-FSFIAKDTEGYKNLLRISTL------HNYGR----- 101
E E R + K+ +GY+NL +++L + + R
Sbjct: 65 CECYIAPGSRFDKKKEKRSRAAHHLILLCKNEQGYRNLCILTSLAFTEGFYYFPRIDKDL 124
Query: 102 -RQFSD--------IQNHLSGIALIIPETYGSLSEL--------------TELSSVADEA 138
RQ+S+ + + +S AL PE L EL +L +++E+
Sbjct: 125 LRQYSEGLICLSGCLSSSVSDAALKSPEAL--LLELQWFQDLFKDDYFTEVQLHKMSEES 182
Query: 139 FIGIDQ---------LTDKGAKFN-----------LPTLPFPAIRYLNFADNEILAILHA 178
G + L +K K N +PT+ I Y+N D + IL
Sbjct: 183 IAGFKEEWLKQEYYSLIEKQIKVNTAVLEASKRLGIPTVATNDIHYINANDWQAHEILLN 242
Query: 179 VRDG--VSFDESLTISSNELLQRPEAYETYF---------LKYFPQALKNLSALTAKIAY 227
V+ G V + T N + + E YF K P+ + N + + +
Sbjct: 243 VQSGETVRIAKQNTHIPNPKRKVYRSREYYFKSPAQMAELFKDIPEVISNTLEVAKRCDF 302
Query: 228 QFD-EKLELPRFDKK-----RQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLS--- 278
FD K P + + E R +A+ +L E+ L + SS L ++
Sbjct: 303 TFDFSKKHYPIYVPESLKTLNSYTEEDRYQASAVFLKQLAEEALPKKYSSEVLAHIAKKF 362
Query: 279 -------VYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAY 331
+ +ER++ E+++I G DY LIV D++ +A+ I G GRGS AGS++ +
Sbjct: 363 PHRDPIDIVKERMDMEMAIIIPKGMCDYLLIVWDIIHWAKANGIPVGPGRGSGAGSVLLF 422
Query: 332 VLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVT 391
+LGIT+++P++ +LFFERF+NPER+ ++ Y R+G D+VAQI+T
Sbjct: 423 LLGITEIEPIRFDLFFERFINPERLSYPDIDIDICMAGRERVINYAIERHGKDNVAQIIT 482
Query: 392 FSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKR 451
F T+ + A++DVG+ M ++++++ + + TL+ E + + + + +
Sbjct: 483 FGTMKAKMAVKDVGRTLDMALSKVNHIAKHIPDLNTTLSKALETDPDLHQLYINDAESAQ 542
Query: 452 IYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLAL--TQYEAPDVEAIGLLK 509
+ ++A +EG R T HA+GV++ + L N++ + S+D + TQY VE++G+LK
Sbjct: 543 VIDMALCLEGSIRNTGVHAAGVIICGDQLTNHIPICISKDSTMITTQYSMKPVESVGMLK 602
Query: 510 IDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMR 569
+D LGL+ LT I+ ++++ + + L+D T +L G TMGIFQ E+ M+
Sbjct: 603 VDLLGLKTLTSINIAMSAIEKKTGQSLAMATLPLDDATTFSLLHQGKTMGIFQMESKGMQ 662
Query: 570 RFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIM 629
+NL P F++I+ +++RPGP IP F+ R+HGKEI+ + ILK TYGIM
Sbjct: 663 ELAKNLRPDLFEEIIAMGALYRPGPMDMIPSFINRKHGKEIIEYDHPLMESILKETYGIM 722
Query: 630 IYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEI 689
+YQEQ+MQ+A A A +SLG+ D+LRRA+ KK ++E+ RE F A +NG E A I
Sbjct: 723 VYQEQVMQIAGALASYSLGEGDVLRRAMGKKDFQQMEQEREKFCKRACNNGIDPELATVI 782
Query: 690 YDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKREV-----MILDA 744
+D +E+FA YGFN+SH AYG + + AY KA++P E+ L ++ +I +A
Sbjct: 783 FDKMEKFAAYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDSDDIEKIGKLIREA 842
Query: 745 LENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQ----PYKDLADF 800
G I P IN+ ++ IR + ++GI R L + IVE + PY+ + DF
Sbjct: 843 QSMGIPILPPHINVSSNHFVATDEGIRFAMGAIKGIGRGLIESIVEERDHHGPYESIRDF 902
Query: 801 VEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHANLLNYYSDDIFMASSGGGF 860
+++ K++I LI G FD DSNR L LA L + D A+SG
Sbjct: 903 IQRSDLKKVSKKSIESLIDAGCFDCFDSNRDLL---LASVEPLYEAIAKDKKEAASGVMT 959
Query: 861 AY----------------HEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPL 904
+ + S+ E EK LLGI +T HP+ + L
Sbjct: 960 FFTLGAMDRKNEVPICLPKDIPTRSKKELLKKEKELLGIYLTEHPMDTVRDHLSRLSVVL 1019
Query: 905 AQLVKNRRMTILVEINYIRTHRT-----KTGQTMAFLTVSDSRENFDVTLFPEIYRQFSG 959
A +N +V +I T K + A L VSD +++++ ++P++Y +
Sbjct: 1020 AGEFENLPHGSVVRTVFIIDKVTTKISSKAQKKFAVLRVSDGIDSYELPIWPDMYEEQQE 1079
Query: 960 ELEQGKFYLISGKVTERNDELQL 982
LE+ + + +R+D L++
Sbjct: 1080 LLEEDRLIYAILVLDKRSDSLRI 1102
sp|O83675|DP3A_TREPA DNA POLYMERASE III, ALPHA CHAIN >gi|3322971 (AE001241) DNA polymerase
III, subunit alpha (dnaE) [Treponema pallidum]
Length = 1170
Score = 414 bits (1052), Expect = e-114
Identities = 294/1043 (28%), Positives = 497/1043 (47%), Gaps = 113/1043 (10%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ + YS LD + + TA LG + + + D GN+ A F + ++ I
Sbjct: 6 FVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGALHFQKVCSAEGIKAI 65
Query: 62 ISIEL------NFEWRGLPIAFSF-----IAKDTEGYKNLLRISTLHN----YGRRQFSD 106
I EL F+ I + +AK+ GY+NL+ +S+ Y + + D
Sbjct: 66 IGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNETGYRNLMVLSSKAYIEGMYYKPRVDD 125
Query: 107 --IQNHLSGIALIIPETYGSLSEL--------TELSSVADEAFIGIDQ------------ 144
+ H G+ + G L L E + A G+D
Sbjct: 126 ELLAQHAEGLICLSSCLAGQLPYLLLQGRKREAEEHARKYRALFGVDNYFIEVQDHGLDE 185
Query: 145 -------LTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAV--RDGVSFDESLTISSNE 195
L + + +P + + Y D+ IL + + S L ++E
Sbjct: 186 EKKVAPLLIELACRLGIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLKFKTDE 245
Query: 196 LLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFDEKLELP-----------RFDKKRQA 244
+ ++P+ + N T +IA + + ++ P F K
Sbjct: 246 FYLKSSEKMAQLFPHYPEMVLN----TVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEHY 301
Query: 245 VEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVA 304
+ HL A + E+ + R + EL VI +M F YFLIV
Sbjct: 302 IRHLVHRGLYDRYAVVSEE----------------IKARADYELDVIVRMDFVGYFLIVW 345
Query: 305 DLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXX 364
D + +A+E DI G GRGS A S+VAY L IT +DP+++ L FERF+NPER+
Sbjct: 346 DFITWAKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMPDFDID 405
Query: 365 XXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVR 424
E++ Y++ RYG+D+V QI+TF TL + A+RDVG+ + +E+ +T+++
Sbjct: 406 FCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLDIPLSEVLMITKLMPD 465
Query: 425 RFG-TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNY 483
T YE+ Q A++ + + ++++A ++E R TS HA+G+V+ + +L +Y
Sbjct: 466 DPKLTFKKAYESEQL--AQMKQEPRYAELFQIAEKLEDTNRNTSLHAAGIVIGKTALTDY 523
Query: 484 VSL-KPSEDLAL-TQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRR--QKIDIDPL 539
V L K S+ + TQ+ +E GL+K+DFLGL+ LT+I R ++LV+R+ +
Sbjct: 524 VPLYKDSKTGKISTQFGMDLIEDCGLVKMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSIS 583
Query: 540 KINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIP 599
I+ +D T ++ G + +FQFE+ M+ L+ PSK +D++ +++RPGP FI
Sbjct: 584 DISDQDPTTFSMLAEGKSAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFID 643
Query: 600 QFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISK 659
Q++ + + D + +IL TYG+++YQEQ+MQVAQ AGFSLG+AD+LRRA+ K
Sbjct: 644 QYIESKRDPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRAMGK 703
Query: 660 KKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYF 719
KK + +++ +++F + A G K+ AE I++++ FA YGFN+SH AY +A+Q A+
Sbjct: 704 KKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHATAYSVVAYQTAFL 763
Query: 720 KAHFPDEFYEIQLRD-----RKREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGL 774
KA+FP EF L + K + + +A + G I+KP +N + V I GL
Sbjct: 764 KANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSIQKPDVNASEPYFSVCEGCIVYGL 823
Query: 775 AHVQGISRDLAKWI----VENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNR 830
++G+ +A + + N PY + ++++P K+N +I+ G FD R
Sbjct: 824 LGIKGLGEQVAFDVFDERIRNGPYTSFVEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTR 883
Query: 831 GKLAYNLADHANLLNYYSDDIFMASSGGGFAYHEA-------------EDYSETEKYDFE 877
L +L D + Y + + SS + E E++S+ E+ E
Sbjct: 884 ASLTAHLDD---AMKYVARKKAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIE 940
Query: 878 KNLLGIGVTPHPLQNLARRFEGNFTPLAQLVKNRR----MTILVEINYIRTHRTKTGQTM 933
K L+G ++ HPL T ++N R I+ +N I + TK+G+ M
Sbjct: 941 KELMGYYISGHPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNM 1000
Query: 934 AFLTVSDSRENFDVTLFPEIYRQ 956
AF + D + D+ +FP ++ +
Sbjct: 1001 AFGSFEDLHGSVDIVVFPVLWEE 1023
sp|P10443|DP3A_ECOLI DNA POLYMERASE III, ALPHA CHAIN >gi|67057|pir||DJEC3A DNA-directed
DNA polymerase (EC 2.7.7.7) III alpha chain - Escherichia
coli >gi|146663 (M19334) DNA polymerase III holoenzyme,
alpha subunit [Escherichia coli] >gi|1552761 (U70214) DNA
polymerase III alpha chain [Escherichia coli] >gi|1786381
(AE000127) DNA polymerase III, alpha subunit [Escherichia
coli] >gi|4902925|dbj|BAA77859.1| (D83536) DNA polymerase
III, alpha chain (EC 2.7.7.7). [Escherichia coli]
Length = 1160
Score = 408 bits (1037), Expect = e-112
Identities = 303/1054 (28%), Positives = 503/1054 (46%), Gaps = 85/1054 (8%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L ++YS +D + K ++ A LG + I D NL +F ++PI
Sbjct: 6 FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65
Query: 62 ISIELNFEWRGLP---IAFSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQNH------L 111
+ + N + L + +A + GY+NL L IS + G I +
Sbjct: 66 VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125
Query: 112 SGIALIIPETYGSL--SELTELSSVADEAFIGIDQ------------------------L 145
G+ L+ G + S L S++ DE ++
Sbjct: 126 EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185
Query: 146 TDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTIS--SNELLQRPEAY 203
+ LP + +R+++ +D + I A+ DG + D+ S + R E
Sbjct: 186 VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245
Query: 204 ETYFLKYFPQALKNLSALTAK--IAYQFDEKLELPRFDKKRQAVE-HLREEATLGLSARL 260
P+AL N + + + + E LP+F + E +L + A GL RL
Sbjct: 246 MCELFADIPEALANTVEIAKRCNVTVRLGEYF-LPQFPTGDMSTEDYLVKRAKEGLEERL 304
Query: 261 EEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMG 320
L L+ Y ERLE EL VI+QMGF YFLIV + ++++++ + G G
Sbjct: 305 A---FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361
Query: 321 RGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNR 380
RGS AGSLVAY L IT +DP++ +L FERFLNPERV +++ ++ +
Sbjct: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421
Query: 381 YGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-TLADEYENNQRF 439
YG D V+QI+TF T+ + +RDVG+ G + +++++ G TLA +E +
Sbjct: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQL 481
Query: 440 KAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSED--LALTQY 497
+ ++K + ++AR++EG+ R HA GVV++ + ++ L E+ +TQ+
Sbjct: 482 PEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541
Query: 498 EAPDVEAIGLLKIDFLGLRNLTIISRLRDLV-KRRQKIDIDPLKIN---LEDEDTLALFR 553
+ DVE GL+K DFLGLR LTII+ +++ KRR K PL I L+D+ + + +
Sbjct: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601
Query: 554 AGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--FIPQFVARRHGKEIV 611
T +FQ E+ M+ ++ L P F+D++ ++FRPGP Q + F+ R+HG+E +
Sbjct: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEI 661
Query: 612 PTVD-----DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELE 666
D +S+ +L+PTYGI++YQEQ+MQ+AQ +G++LG AD+LRRA+ KKK E+
Sbjct: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721
Query: 667 KLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDE 726
K R F + A NG + E A +I+DL+E+FA YGFN+SH AY +++Q + KAH+P E
Sbjct: 722 KQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781
Query: 727 FYEIQL---RDRKREV--MILDALENGFEIEKPSINLMKIGDFVKNK-KIRLGLAHVQGI 780
F + D +V ++ + G +I P IN V + +I G+ ++G+
Sbjct: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGV 841
Query: 781 SRDLAKWIVENQP----YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYN 836
+ I+E + +++L D + + + LI GAFD +R L +
Sbjct: 842 GEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901
Query: 837 LADHANLLNYY--SDDIFMASSGGGFA---------YHEAEDYSETEKYDFEKNLLGIGV 885
L D + + ++ I A G A Y + + E D E+ LG+ +
Sbjct: 902 LGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961
Query: 886 TPHPLQNLARRFEG--NFTPLAQLVKNRRMTILVEINYI---RTHRTKTGQTMAFLTVSD 940
T HP+ + E L + R ++ + R TK G + T+ D
Sbjct: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDD 1021
Query: 941 SRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974
+V LF + ++ LE+ + ++SG+V+
Sbjct: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055
sp|P56157|DP3A_HELPY DNA POLYMERASE III, ALPHA CHAIN >gi|2314638|gb|AAD08502.1| (AE000646)
DNA polymerase III alpha-subunit (dnaE) [Helicobacter
pylori 26695]
Length = 1211
Score = 406 bits (1032), Expect = e-112
Identities = 321/1137 (28%), Positives = 515/1137 (45%), Gaps = 129/1137 (11%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ TEYS LD K+ + LG ++V + D GN+ A F +K ++PI
Sbjct: 7 FTHLHLHTEYSLLDGANKIKILAKRVKELGMKSVSVTDHGNMFGAIDFYTSMKKEGIKPI 66
Query: 62 ISIE--------LNFEWRGLPIAFSFIAKDTEGYKNLLRISTL------HNYGRRQFSDI 107
I +E L+ + AK+ EGY+NL+ +S++ + + R +
Sbjct: 67 IGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPRINKKLL 126
Query: 108 QNHLSGIALIIPETYGSLS--------------------------ELTEL---------- 131
+ H GI G ++ E E+
Sbjct: 127 KEHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKKIACEYQEIFEDDFYLEIM 186
Query: 132 -SSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDES-- 188
+ D+ FI +Q+ + L + Y D + + V G + ++
Sbjct: 187 RHGILDQRFID-EQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTLNDKGR 245
Query: 189 LTISSNEL-LQRPEAYETYFLKYFPQALKNLSALTAKIAYQFD---EKLELP-----RFD 239
L S +E ++ PE F P+AL+N + K + D +K P +F
Sbjct: 246 LKHSVHEFYIKSPEEMAKLFAD-IPEALENTQEIADKCVLEIDLKDDKKNPPTPPSFKFT 304
Query: 240 KKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDY 299
K E L E A + L + V + Y+ERLEKE+ VI M F Y
Sbjct: 305 KAYAQNEGLNFEDDASYFAYKAREGLKERLVLVPKEKHDQYKERLEKEIEVITNMKFPGY 364
Query: 300 FLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXX 359
LIV D +RYA+E I G GRGSAAGSLVA+ L IT +DP++++L FERFLNPER+
Sbjct: 365 MLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPERISMP 424
Query: 360 XXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLT 419
E++ YM +YG +VAQ++TF+ + + +RDV + M E +
Sbjct: 425 DIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEADDFA 484
Query: 420 RMLVRRFGTLADEYENNQRF-----------KAEVLKNGKLKRIYEVARRIEGMPRQTST 468
+++ R G YE N F K V N K+++E + +E + R
Sbjct: 485 KLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNELAKQVWEYSLNLENLNRNAGV 544
Query: 469 HASGVVL-SEESLVNYVSLKPSEDLA--LTQYEAPDVEAIGLLKIDFLGLRNLTIISRLR 525
HA+ +V+ S++ L + L SE +TQY +E + L+K DFLGL+ LT+I
Sbjct: 545 HAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVIDDAL 604
Query: 526 DLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVD 585
++K + KI +D L ++++D ++G+T+GIFQ E+ + + L PS F+DI+
Sbjct: 605 KIIKTQHKISVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFEDIIA 664
Query: 586 ATSIFRPGP--SQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFA 643
++ RPGP S + FV R+HG E + + ILKPTYG ++YQEQ+MQ+ Q
Sbjct: 665 IIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIVQTIG 724
Query: 644 GFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNR 703
GFSLG+ADL+RRA+ KK + + F++ A + GH +KA ++DLI +FA YGFN+
Sbjct: 725 GFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGYGFNK 784
Query: 704 SHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKREV-----MILDALENGFEIEKPSINL 758
SH AY + FQ AY K ++ EF L ++ I + E+ P IN
Sbjct: 785 SHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINS 844
Query: 759 ----MKIGDFVK-----NKKIRLGLAHVQGISRDLAKWIVENQ---PYKDLADFVEKLPN 806
+ +F KKI GL ++G+ + K I+E + YK L DF+ ++
Sbjct: 845 SMQDFSVAEFKNQKGELEKKIVFGLGAIKGVGGEPIKNIIEERAKGDYKSLEDFISRVDF 904
Query: 807 NFHKKENILPLIQIGAFDYADSNRGKLAYNL---------ADHANLLNYYSDDIFMASSG 857
+ K+++ PL++ G+ D R + NL D AN + + +F A G
Sbjct: 905 SKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFGAMEG 964
Query: 858 G----------GFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEG-----NFT 902
G H+A+ E E LGI V+ +PL +G
Sbjct: 965 GTKEQVVLDMIDLGEHDAKTLLEC-----EYETLGIHVSGNPLDEFKEEIKGFKNLVKSI 1019
Query: 903 PLAQLVKNRRMTILVEINYIRTHRTK-TGQTMAFLTVSDSRENFDVTLFPEIYRQFSGEL 961
+ +L + +L +I ++ K +G+ + D F++ LF + EL
Sbjct: 1020 DIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGIADILDRYGKFELMLFEKQLNALE-EL 1078
Query: 962 EQGKFYLISGKVTERNDELQLVTDRISPALETDRKLWLNLRDDKYNQKISQILREFP 1018
+ K + K+ E+ + ++L I LE+ R++ + K +K + +RE P
Sbjct: 1079 DINKPLVFKCKIEEQEEVVRLRLFEILD-LESAREVKIPKARYKDPEKQKEEVREIP 1134
gi|4155965 (AE001558) DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 405 bits (1030), Expect = e-112
Identities = 323/1137 (28%), Positives = 514/1137 (44%), Gaps = 129/1137 (11%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ TEYS LD K+ + LG ++V + D GN+ A F +K ++PI
Sbjct: 7 FTHLHLHTEYSLLDGANKIKILAKRIKELGMKSVSVTDHGNMFGAIDFYTSMKKEGIKPI 66
Query: 62 ISIE--------LNFEWRGLPIAFSFIAKDTEGYKNLLRISTL------HNYGRRQFSDI 107
I +E L+ + AK+ EGY+NL+ +S++ + + R +
Sbjct: 67 IGMEAYIHNDDNLSSKETKQRFHLCLFAKNQEGYENLMFLSSMAYLEGFYYFPRINKKLL 126
Query: 108 QNHLSGIALIIPETYGSLS--------------------------ELTEL---------- 131
+ H GI G ++ E E+
Sbjct: 127 REHSKGIIASSACLQGEVNYHLNTNNERNRKYGAKGYDEAKRIACEYQEIFEDDFYLEIM 186
Query: 132 -SSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDES-- 188
+ D+ FI +Q+ + L + Y D + + V G + ++
Sbjct: 187 RHGILDQRFID-EQVIKMSLETGLKIIATNDTHYTMPNDAKAQEVAMCVAMGKTLNDKGR 245
Query: 189 LTISSNEL-LQRPEAYETYFLKYFPQALKNLSALTAKIAYQFD---EKLELP-----RFD 239
L S +E ++ PE F P+AL+N + K + D +K P +F
Sbjct: 246 LKHSVHEFYIKSPEEMAKLFAD-IPEALENTQEIADKCVLEIDLKDDKKNPPTPPSFKFT 304
Query: 240 KKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDY 299
K E L E A + L + V + Y+ERLEKE+ VI M F Y
Sbjct: 305 KAYAQNEGLSFEDDASYFAHKAREGLRERLILVPEEKHEQYKERLEKEIEVITNMKFPGY 364
Query: 300 FLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXX 359
LIV D +RYA+E I G GRGSAAGSLVA+ L IT +DP++++L FERFLNPERV
Sbjct: 365 MLIVWDFIRYAKEMGIPVGPGRGSAAGSLVAFALKITDIDPLKYDLLFERFLNPERVSMP 424
Query: 360 XXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLT 419
E++ YM +YG +VAQ++TF+ + + +RDV + M E +
Sbjct: 425 DIDTDFCQRRRKEIIEYMIEKYGKYNVAQVITFNKMLAKGVIRDVARVLDMPYKEADDFA 484
Query: 420 RMLVRRFGTLADEYENNQRF-----------KAEVLKNGKLKRIYEVARRIEGMPRQTST 468
+++ R G YE N F K V N K+++E + +E + R
Sbjct: 485 KLIPNRLGITLKGYEKNGEFIEGAWELEPKIKELVESNEVAKQVWEYSLNLENLNRNAGV 544
Query: 469 HASGVVL-SEESLVNYVSLKPSEDLA--LTQYEAPDVEAIGLLKIDFLGLRNLTIISRLR 525
HA+ +V+ S++ L + L SE +TQY +E + L+K DFLGL+ LT+I
Sbjct: 545 HAAALVVDSQKELWHKTPLFASEKTGGIVTQYSMKYLEPVDLIKFDFLGLKTLTVIDDAL 604
Query: 526 DLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVD 585
++K + ID+D L ++++D ++G+T+GIFQ E+ + + L PS F+DI+
Sbjct: 605 KIIKTQHNIDVDFLSLDMDDPKVYKTIQSGDTVGIFQIESGMFQGLNKRLRPSSFEDIIA 664
Query: 586 ATSIFRPGP--SQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFA 643
++ RPGP S + FV R+HG E + + ILKPTYG ++YQEQ+MQ+ Q
Sbjct: 665 IIALGRPGPMESGMVDDFVNRKHGVEPIAYAFKELEPILKPTYGTIVYQEQVMQIVQTIG 724
Query: 644 GFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNR 703
GFSLG+ADL+RRA+ KK + + F++ A + GH +KA ++DLI +FA YGFN+
Sbjct: 725 GFSLGEADLIRRAMGKKDAQIMADNKAKFVEGAKNLGHDGQKAANLWDLIVKFAGYGFNK 784
Query: 704 SHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKREV-----MILDALENGFEIEKPSINL 758
SH AY + FQ AY K ++ EF L ++ I + E+ P IN
Sbjct: 785 SHSAAYAMITFQTAYLKTYYKHEFMAAMLTSESNKIESVARYIDEVRALEIEVMPPHINS 844
Query: 759 ----MKIGDFVK-----NKKIRLGLAHVQGISRDLAKWIVENQ---PYKDLADFVEKLPN 806
+ +F KKI GL V+G+ + K I+E + YK L DF+ ++
Sbjct: 845 SMQDFSVAEFKNQKGELEKKIVFGLGAVKGVGGEPIKNIIEERAKGDYKSLEDFISRVDF 904
Query: 807 NFHKKENILPLIQIGAFDYADSNRGKLAYNL---------ADHANLLNYYSDDIFMASSG 857
+ K+++ PL++ G+ D R + NL D AN + + +F A G
Sbjct: 905 SKLTKKSLEPLVKSGSLDNLGYTRKTMLANLDLICDAGRAKDKANEMMQGGNSLFGAMEG 964
Query: 858 G----------GFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEG-----NFT 902
G H+A+ E E LGI V+ +PL +G
Sbjct: 965 GIKEQVVLDMVDLGEHDAKTLLEC-----EYETLGIHVSGNPLDEFKEEIKGFKNLVKSI 1019
Query: 903 PLAQLVKNRRMTILVEINYIRTHRTK-TGQTMAFLTVSDSRENFDVTLFPEIYRQFSGEL 961
+ +L + +L +I ++ K +G+ + D F++ LF + EL
Sbjct: 1020 DIEELEIGSQAYLLGKIMEVKKKIGKRSGKPYGTADILDRYGKFELMLFEKQLNALE-EL 1078
Query: 962 EQGKFYLISGKVTERNDELQLVTDRISPALETDRKLWLNLRDDKYNQKISQILREFP 1018
+ K + K+ E+ + +L I LE+ R++ + K +K + +RE P
Sbjct: 1079 DINKPLVFKCKIEEQEEVARLRLFEILD-LESAREVKIPKARYKDPEKQKEDVREIP 1134
emb|CAB39586.1| (AL049478) putative DNA polymerase III alpha chain [Mycobacterium
leprae]
Length = 1177
Score = 405 bits (1029), Expect = e-111
Identities = 325/1160 (28%), Positives = 517/1160 (44%), Gaps = 164/1160 (14%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ TEYS LD K+ RL VG+ D GN+ A F A K ++PI
Sbjct: 6 FVHLHNHTEYSMLDGAAKITPMFAEVERLQMPAVGMTDHGNMFGASEFYNTAIKAGIKPI 65
Query: 62 ISIEL------NFEWR-----------------GLPIAFSFIAKDTEGYKNLLRISTLHN 98
I +E F+ R G + +A++ G +NL ++S+L +
Sbjct: 66 IGVEAYIAPGSRFDTRRITWGDPSQKADDVSAGGAYTHLTMVAENAAGLRNLFKLSSLAS 125
Query: 99 Y-------GRRQFSDIQNHLSGIALIIPETYGSLSELTEL--------SSVADEAFIGID 143
+ R I + GI + G + L S+ +G D
Sbjct: 126 FEGQLSKWSRMDAELIGEYAEGIIVTTGCPSGEVQTRLRLGHDREALESAAKWREIVGPD 185
Query: 144 Q-------------------LTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVS 184
L + G K N+P L Y+ RD V
Sbjct: 186 NYFLELMDHGLSIEQRVREGLLNIGRKLNIPPLATNDCHYVT-------------RDAVH 232
Query: 185 FDESLT-ISSNELLQRPEAY----ETYFLKY-----------FPQALKNLSALTAKI--- 225
E+L + + + L P + + Y+LK P A + + ++
Sbjct: 233 NHEALLCVQTGKTLSDPNRFKFHGDGYYLKSAAEMRQLWDDEVPGACDSTLLIAERVQSY 292
Query: 226 AYQFDEKLELPRFDKK--RQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQER 283
A ++ + +P F LR E GL R + + Y ER
Sbjct: 293 ADVWEPRNRMPVFPVPVGHDQASWLRHEVDAGLKRRFPDG------------PPNGYVER 340
Query: 284 LEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQH 343
E+ VI GF YFLIVADL+ +AR I G GRGSAAGSL AY LGIT +DP+ H
Sbjct: 341 AAYEIDVICDKGFPAYFLIVADLVNHARSVGIRVGPGRGSAAGSLAAYALGITDIDPIPH 400
Query: 344 NLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRD 403
L FERFLNPER E++ Y +++G D VAQ++TF T+ + AL+D
Sbjct: 401 GLLFERFLNPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKD 460
Query: 404 VGK------AFGMTEAELSNLTRMLVRRFGTLADEYE-NNQRFK--AEVLK----NGKLK 450
+ F M + L ++ + L+ + ++RFK AEV + ++
Sbjct: 461 SARIHYGQPGFAMADRITKALPPAIMAKDIPLSGITDPAHERFKEAAEVRSLIETDSDVR 520
Query: 451 RIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLL 508
IY+ AR +EG+ R HA V+LS E L + L +P + +T ++ P EAIGLL
Sbjct: 521 IIYQTARGLEGLIRNAGVHACAVILSSEPLTEAIPLWKRPQDGAIITGWDYPACEAIGLL 580
Query: 509 KIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQM 568
K+DFLGLRNLTII + +K + ID+D + L+D+ T L G+T+G+FQ + M
Sbjct: 581 KMDFLGLRNLTIIGDAIENIKTNRGIDLDLESVPLDDQATYELLGRGDTLGVFQLDGGPM 640
Query: 569 RRFLRNLAPSKFDDIVDATSIFRPGPSQFIP--QFVARRHGKEIV----PTVDDSISEIL 622
R LR + P+ F+DIV +++RPGP + R++ ++++ P +++ + EIL
Sbjct: 641 RDLLRRMQPTGFEDIVAVLALYRPGPMGMNAHNDYADRKNNRQVIKPIHPELEEPLREIL 700
Query: 623 KPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHS 682
TYG+++YQEQIM++AQ AG+SL +AD+LR+A+ KKK LEK E F + NG S
Sbjct: 701 AETYGLIVYQEQIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFS 760
Query: 683 KEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRD-----RKR 737
+ ++D+I FA+Y FN+SH YG +++ AY KA+F E+ L K
Sbjct: 761 VHAIKALWDIILPFADYAFNKSHAAGYGLISYWTAYLKANFAGEYMAGLLTSVGDDKDKA 820
Query: 738 EVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQ----P 793
V + D + G + P +N + IR GL V+ + ++ +++ +
Sbjct: 821 AVYLADCRKFGITVLPPDVNESVLDFASVGADIRYGLGAVRNVGANVVGSLIKTRNAKGK 880
Query: 794 YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLAD---------HANLL 844
+ D +D++ K+ K+ LI+ GAFD +R L AD A +
Sbjct: 881 FADFSDYLNKIDITSCNKKVTESLIKAGAFDSLGHSRKGLFLVHADAVDSVLGTKKAEAI 940
Query: 845 NYYSDDIFMASSGGGFAYHEA----EDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGN 900
+ D+F + GG A +++ + K E+ +LG+ V+ HPL +A
Sbjct: 941 GQF--DLFGGTDGGTDAVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAHLLAAQ 998
Query: 901 FTPLAQLVKNRRMTILVEINY------IRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIY 954
+ + ++ ++ + K G A + D +V FP Y
Sbjct: 999 VDTAIPTILDGGVSNDTQVRVGGILAAVNRRVNKNGIPWASAQLDDLTGGIEVMFFPHTY 1058
Query: 955 RQFSGELEQGKFYLISGKVTERNDELQLVTDRI----SPALETDRKLWLNLRD-----DK 1005
+ ++ L++ KV R+D + L+ +++ ++ DR L ++L DK
Sbjct: 1059 SSYGADIIDDAVVLVNAKVVVRDDRIALIANQLVVPDFSNVQEDRPLAVSLLTRQCTFDK 1118
Query: 1006 YNQKISQILREFPGSHQVIL 1025
N + Q+L PG+ QV L
Sbjct: 1119 VN-ALKQVLARHPGTSQVHL 1137
sp|P52022|DP3A_VIBCH DNA POLYMERASE III, ALPHA CHAIN >gi|940886 (U30472) DNA polymerase
III holoenzyme alpha subunit [Vibrio cholerae]
Length = 1159
Score = 405 bits (1029), Expect = e-111
Identities = 301/1058 (28%), Positives = 501/1058 (46%), Gaps = 94/1058 (8%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L +++S +D + KV ++ +G + + D NL +F A ++PI
Sbjct: 6 FIHLRIHSDFSMVDGLSKVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPI 65
Query: 62 ISIELNF---EWRGLPIAFSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQN------HL 111
I + E+ + +AK+ GYKNL L IS + G Q + + H
Sbjct: 66 IGADFTLQSEEFGDELTKLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHA 125
Query: 112 SGIALIIPETYGSLS----------------------------ELTELSSVADEAFIGID 143
G+ ++ G + EL +E+++
Sbjct: 126 EGLIVLSGGKSGEVGRALLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF- 184
Query: 144 QLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQ--RPE 201
D +++LP + + ++ E I A+ DG + ++ + Q R E
Sbjct: 185 -ALDVAEQYDLPVVATNEVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSE 243
Query: 202 AYETYFLKYFPQALKNLSALTAK--IAYQFDEKLELPRFDKKRQAVEH-LREEATLGLSA 258
A P+AL N + + + + E LP F A+E L ++ GL
Sbjct: 244 AEMCELFADIPEALANSVEIAKRCNVTVRLGEYF-LPNFPTGGMAIEDFLVMKSREGLEE 302
Query: 259 RLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCG 318
RLE L V + Y ERL+ EL VI+QMGF YFL+V + ++++++ DI G
Sbjct: 303 RLE---FLFPDPEVRAKRRPEYDERLQVELDVINQMGFPGYFLVVMEFIQWSKDNDIPVG 359
Query: 319 MGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMK 378
GRGS AGSLVAY L IT +DP++++L FERFLNPERV +++ ++
Sbjct: 360 PGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVA 419
Query: 379 NRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-TLADEYENNQ 437
YG D V+QI+TF T+ + +RDVG+ G + +++++ G TL +
Sbjct: 420 EMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFIAEP 479
Query: 438 RFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL--KPSEDLALT 495
K + ++K + + R +EG R HA GVV+S ++ ++ + + +T
Sbjct: 480 ELKELYDADEEVKELIDKCRILEGCTRNAGKHAGGVVISPTAITDFAPIYCDAEGNFPVT 539
Query: 496 QYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRR-QKIDIDPLKIN---LEDEDTLAL 551
Q++ DVE GL+K DFLGLR LTII LV R +K P++I L+D +
Sbjct: 540 QFDKNDVETAGLVKFDFLGLRTLTIIDWALGLVNPRLKKAGKPPVRIEAIPLDDARSFRN 599
Query: 552 FRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--FIPQFVARRHGKE 609
+ T +FQ E+ M+ ++ L P F+DI+ ++FRPGP Q + F+ R+HG+E
Sbjct: 600 LQDAKTTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGRE 659
Query: 610 IVPTVDD-----SISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSE 664
+ D+ S+ EIL+P YGI++YQEQ+MQ+AQ +G++LG AD+LRRA+ KKK E
Sbjct: 660 AISYPDEKWQHESLKEILEPPYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEE 719
Query: 665 LEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFP 724
+ K R F + A NG E A +I+DL+E+FA YGFN+SH AY +++Q + K H+P
Sbjct: 720 MAKQRAVFQEGAEKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYP 779
Query: 725 DEF----YEIQLRDRKREVMILDALEN-GFEIEKPSIN----LMKIGDFVKNKKIRLGLA 775
EF + + ++ V ++D +N G + P IN + D N I G+
Sbjct: 780 AEFMAAVMTADMDNTEKVVGLVDECKNMGLTVLPPDINSGLYRFNVDD---NGAIVYGIG 836
Query: 776 HVQGISRDLAKWIVENQP----YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRG 831
++G+ + I+E + +KDL DF ++ K I LI GA D +R
Sbjct: 837 AIKGVGEGPIEAILEARNKGGYFKDLFDFCARIDLKKVNKRVIEKLILAGALDRLGPHRA 896
Query: 832 KLAYNLADHANLLN-YYSDDIFMASSGGGF----------AYHEAEDYSETEKYDFEKNL 880
+ ++ D + ++ + F + G Y + ++ E + + E+
Sbjct: 897 AMMASVDDAVRAASQHHQAEAFGQADMFGVLTDAPEEVEQKYTQVPEWPEKVRLEGERET 956
Query: 881 LGIGVTPHP----LQNLARRFEGNFTPLAQLVKNRRMTILVEINYIRTHRTKTGQTMAFL 936
LG+ +T HP L+ L + A +++ +T + R TK G + +
Sbjct: 957 LGLYLTGHPVDEYLKELTKYTSCRLNEAAPTRRDQSLTAAGLVIAARVMTTKRGTRIGLM 1016
Query: 937 TVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974
T+ D +V L+ E +++ LE+ K ++SG+V+
Sbjct: 1017 TLDDRSGRLEVMLYSEALDRYAEWLEKDKILVVSGQVS 1054
gb|AAD44402.1|AF062919_1 (AF062919) DNA polymerase III [Pseudomonas fluorescens]
Length = 1173
Score = 404 bits (1027), Expect = e-111
Identities = 322/1155 (27%), Positives = 543/1155 (46%), Gaps = 152/1155 (13%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L TEYS +D +V++ ++ +G V + D N+ + +F + A ++PI
Sbjct: 5 FVHLRLHTEYSLVDGLVRIKPLVKALTGMGMPAVAVTDQNNMCSLVKFYKNAMGAGIKPI 64
Query: 62 ISIEL---NFEWRGLPIAFSFIAKDTEGYKNLLRISTLHNYGRRQFSDIQNHLSGIALII 118
+L N + G S + + +GY+NL + + R F D Q + G+ +I
Sbjct: 65 CGADLWLSNKDPDGPLSRISLLVMNAQGYRNLTELIS------RGFIDGQRN--GMVIIE 116
Query: 119 PETYGSLSELTELSSVADEAFIGIDQLTDKGA---------------------------- 150
E +E + S A E IG+ + A
Sbjct: 117 REWVAEANEGLIMLSAAKEGEIGMAMIGGNPAEAEALAREWMAVFPDRFYLEIQRTNRPN 176
Query: 151 -------------KFNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDE---SLTISSN 194
K P + +R++ D + +G + D+ S S
Sbjct: 177 DEEQLHGAVALADKLGAPLVATNDVRFIKQEDFAAHETRVCIGEGRALDDPRRSKNYSDQ 236
Query: 195 ELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFDEKLELPRFDKKRQAV-------EH 247
+ L+ E F P A++N T +IA + + ++L + + E+
Sbjct: 237 QYLKSAEEMAELFSD-LPDAIEN----TVEIAKRCNIDVKLGKHFLPDYPIPDGMTIDEY 291
Query: 248 LREEATLGLSARLEEKNLLTEVSSVNLQ-DLSVYQERLEKELSVIHQMGFDDYFLIVADL 306
R+ + GL RL LL + ++ + + VY +RL EL +I QMGF YFLIV D
Sbjct: 292 FRKVSFDGLEERLSV--LLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDF 349
Query: 307 LRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXX 366
+++A+ + G GRGS AGSLVAYV IT +DP++++L FERFLNPERV
Sbjct: 350 IQWAKNNGVPVGPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFC 409
Query: 367 XXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRF 426
++ Y+ +YG + V+QI+TF ++ + +RDV +A G + L++M+
Sbjct: 410 MDGRDRVIDYVAEKYGRNAVSQIITFGSMAAKAVVRDVARAQGKSFGLADRLSKMVPFEV 469
Query: 427 G-TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVS 485
G TL YE + + + + + I+E+AR++EG+ R HA GVV++ L ++
Sbjct: 470 GMTLEKAYEQEEILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSP 529
Query: 486 LKPSE--DLALTQYEAPDVEAIGLLKIDFLGLRNLTIIS-RLRDLVKRRQKIDIDPLKIN 542
+ E D +TQ++ DVEA GL+K DFLGLR LTII L+ + + R K++ PL I
Sbjct: 530 IYCDEAGDGLVTQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEPPLDIA 589
Query: 543 ---LEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--F 597
L+D+ T L + T +FQ E+ M+ ++ L +D++ ++FRPGP Q
Sbjct: 590 FIPLDDKPTYQLLQKAETTAVFQLESRGMKELIKKLKLDCLEDLIALVALFRPGPLQSGM 649
Query: 598 IPQFVARRHGKEIV--PTVD---DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADL 652
+ F+ R+HG+ + P D + + +L PTYGI++YQEQ+MQ+AQ AG++LG AD+
Sbjct: 650 VDDFINRKHGRAELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADM 709
Query: 653 LRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGAL 712
LRRA+ KKK E+ K R F++ + N + A I+DL+E+FA YGFN+SH AYG +
Sbjct: 710 LRRAMGKKKPEEMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLV 769
Query: 713 AFQIAYFKAHFPDEF----YEIQLRDRKREVMILDALEN-GFEIEKPSINLMKIGDFVKN 767
++Q A+ KAH+P F + + + V +++ + ++ P +N + V +
Sbjct: 770 SYQTAWLKAHYPAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVND 829
Query: 768 K-KIRLGLAHVQGISRDLAKWIVENQ---PYKDLADFVEKLPNNFHKKENILPLIQIGAF 823
+ +I GL ++G+ + I E + P+KDL DF ++ K + LI+ GA
Sbjct: 830 EGRIVYGLGAIKGVGEGPVEAITEARQAGPFKDLFDFCARVDLKRINKRTLDGLIRSGAL 889
Query: 824 D---------------YADSNRGKLAYNLAD---------------HANLLNYYSDDIFM 853
D D NR L + + HA+L +F+
Sbjct: 890 DRLGPYFHDEQKAYQANIDRNRAVLLAAMEEAIKSAEQTARTRDSGHADLFG----GLFV 945
Query: 854 ASSGGGFAYH-EAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQL----V 908
+A H +A++ + E+ EK+ LG+ +T HP+ +EG A+ +
Sbjct: 946 EEDADVYAIHRKAKELTLKERLKGEKDTLGLYLTGHPID----EYEGEIRRFARQRIIDL 1001
Query: 909 KNRR--MTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKF 966
K R T+ I +R + K G M F+T+ D + +LF + + L+
Sbjct: 1002 KPARDTQTVAGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAM 1061
Query: 967 YLISGKVTERNDE----LQLVTDRISPA------LETDRKLWLNLRDDKYNQK--ISQIL 1014
++ G+V+ ND+ L+L R+ L +L L +D K +Q + +L
Sbjct: 1062 VVVEGEVS--NDDFSGGLRLRVKRVMSMEDARTNLAESLRLKLQTQDLKGDQLRWLGDLL 1119
Query: 1015 REFPGSHQVILHYSN 1029
+ G+ + + Y++
Sbjct: 1120 KRHRGACPITMEYTS 1134
gb|AAF30826.1|AE002138_13 (AE002138) DNA polymerase III alpha chain 2 [Ureaplasma
urealyticum]
Length = 969
Score = 402 bits (1023), Expect = e-111
Identities = 300/1015 (29%), Positives = 494/1015 (48%), Gaps = 74/1015 (7%)
Query: 1 MFAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQP 60
MF LN + YS L+S + +DD ++ A V + D+ N++ F KA+ NL P
Sbjct: 1 MFINLNVHSHYSLLNSTLSIDDLIKYALDNKQPYVCLTDLNNMYGCIEFYDKAKAHNLTP 60
Query: 61 IISIELNFEWRGLPIAFSFIAKDTEGYKNLLRISTLHNYGRRQFSDIQNHLSGIALIIPE 120
II +E ++ L +A+ AK+ GY L++ S+ + +IQ+ + ++ +
Sbjct: 61 IIGLEFEYQNATL-VAY---AKNYNGYLKLIKWSSWIMTSKE--FEIQDDFDDLIIVCKK 114
Query: 121 TYGSLSELTELSSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVR 180
G++ + Q D+ A + ++ Y N D + + A++
Sbjct: 115 --GTIVFKSP----------NFYQTHDQNAP---NAIALQSVFYANKNDKIVFLAMLAIK 159
Query: 181 DGVS---FDESLTISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQF-DEKLELP 236
+ + F +N L A +++F P AL NL+ + ++ Q D + +P
Sbjct: 160 NDLKLEDFKNCCDFDNNHFLNDNLA-QSFFS---PIALNNLNKVLNELKVQIHDLPINIP 215
Query: 237 RFDKKRQAV--EHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQM 294
+DK+ + E L++ GL RL + VN +Y +RL+ EL VI++
Sbjct: 216 VYDKQNSIISSEILKQLCISGLKKRLNAND-----GQVN----KIYVQRLKYELDVINEK 266
Query: 295 GFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPE 354
FDDYFLIV D + +A+ I G GRGSAAGSLVAY L IT +DP++HNL FERFLNP
Sbjct: 267 QFDDYFLIVYDFINFAKSNGIIVGPGRGSAAGSLVAYCLHITDIDPIKHNLIFERFLNPT 326
Query: 355 RVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAE 414
R ++ Y+ +YG+DHVA I+TF L + A+RDVG+ G+
Sbjct: 327 RKSMPDIDTDIMDEKRDLVIEYLFEKYGNDHVAYILTFQRLKAKMAIRDVGRILGIDLKV 386
Query: 415 LSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKL--KRIYEVARRIEGMPRQTSTHASG 472
+ + + + + DE + K +LK L K ++E+++++ PRQ THA+G
Sbjct: 387 IDKICKNIKPEY----DEDLDLAIKKNTILKEMYLLHKELFEISKKLINAPRQIGTHAAG 442
Query: 473 VVLSEESLVNYVSLKPS-EDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRR 531
++LS+ + N + ++ D L+QY +E GL+K+D LGL+NLTII + ++
Sbjct: 443 IILSDSLISNIIPIQLGINDRPLSQYSMEYLERFGLIKMDLLGLKNLTIIDNVLKMIYEN 502
Query: 532 QKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFR 591
Q ID IN D+ T GIFQ E+P M++ L + P +DI +++FR
Sbjct: 503 QNKKIDLFNINYNDKFVFEDLAKARTNGIFQLESPGMKKVLLKVKPQNIEDISIVSALFR 562
Query: 592 PGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKAD 651
PGP Q I FV RR +E +++ +IL+PTYGI++YQEQ++++ + A F + +D
Sbjct: 563 PGPQQNIKTFVERRFKREEFSYWNEATRKILEPTYGIIVYQEQVIELVKTIANFDIATSD 622
Query: 652 LLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGA 711
RRAISKK L +L++DF++ A +N + + +I++ I FA+YGFN SH AY
Sbjct: 623 NFRRAISKKDEKILIQLKDDFINGALNNNYKQPLVNQIFEYIFSFAHYGFNHSHSLAYSY 682
Query: 712 LAFQIAYFKAHFPDEFYEIQLRDR-----KREVMILDALENGFEIEKPSINLMKIGDFV- 765
+++ +AY K ++ EF + L K + +A E I+ P I DFV
Sbjct: 683 ISYWLAYLKHYYTLEFLSVLLSHTSASKDKLLSYLNEAKEFNISIKGPDIQYFS-NDFVI 741
Query: 766 --KNKKIRLGLAHVQGISRDLAKWI---VENQPYKDLADFVEKLPNNFHKKENILPLIQI 820
+ + IR G ++G +L K I ++ D +++ L +NI LI++
Sbjct: 742 DTQKQIIRFGFKTIKGFGDELLKKIKSALQKSTLSDYISYIDALKKGNVSLKNIEILIRV 801
Query: 821 GAFDYADSNRGKLAYNLAD--HANLLNYYSDDIFMASSGGGFAYHEAEDYSETEKY-DFE 877
G FD NR L NL + LN + D+ + G Y A+D S ++Y D E
Sbjct: 802 GTFDSFGINRLFLLNNLNEIFEKTGLNGHFFDLNLV----GLDY--AKDMSVNDRYLDDE 855
Query: 878 KNLLGIGVTPHPLQNLARRFEGN-----FTPLAQLVKNRRMTILVEINYIRTHRTKTGQT 932
LGI + N + N ++ N IL ++ I+ +TK G
Sbjct: 856 IQYLGIDLNSLNYANYKTEIDYNKLKYTIKDFYEINTNYETNILAQVLNIKQSKTKNGND 915
Query: 933 MAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRI 987
+ +L + +T+F + + E+ G Y+ K+ + + + RI
Sbjct: 916 IFYLETLIDNKKQTLTIF-QNSKYLIDEISIGGIYVFGVKLLNHFNFIVNIKQRI 969
emb|CAB72992.1| (AL139076) DNA polymerase III, alpha chain [Campylobacter jejuni]
Length = 1200
Score = 402 bits (1022), Expect = e-111
Identities = 300/1050 (28%), Positives = 503/1050 (47%), Gaps = 104/1050 (9%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ TEYS LD K+ + T G +V + D GN+ A F + + L+PI
Sbjct: 4 FTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGNMFGAIDFYQTMKAQGLKPI 63
Query: 62 ISIE--------LNFEWRGLPIAFSFIAKDTEGYKNLLRIST------LHNYGRRQFSDI 107
I IE L+ + AK+ GY+NL+ +S+ L+ Y R +
Sbjct: 64 IGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMYLSSQSYIKGLYYYPRINKKLL 123
Query: 108 QNHLSGI----ALIIPETYGSLSELTELS--------SVADEAFIGIDQLTDKGAKFNLP 155
+++ G+ A + E L+ +E + A EA + ++ F +
Sbjct: 124 EDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGYEAAKEAALWYKKVFKDDFYFEIM 183
Query: 156 TLPFPAIRYLNFADNEILAI-------LHAVRD--------GVSFDESLTISSNELLQRP 200
R + D++I+ + + A D + + + I+ + L P
Sbjct: 184 RHGIGDQRMI---DDDIIRLSKELNIKIIATNDTHYTFKERAAAHEVFMCIAMGKKLNDP 240
Query: 201 EAYETYFLKYFPQALKNLSALTAKIAYQFDEKLEL---------------PRFDKKRQ-A 244
+ +++ ++ + +S L A I + E+ P F R+ A
Sbjct: 241 DRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIAQKCNLELNLGNPTPPNFKFTREYA 300
Query: 245 VEH--LREEATLGLS--------ARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQM 294
+H + E T S L +K L + ++ Y++RLE E+++I M
Sbjct: 301 KDHNIILPEETKEFSFDNDDMVFEELCKKGLEERLKFIDESKHEEYKQRLEVEINIIKNM 360
Query: 295 GFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPE 354
F Y LIV D ++ A+++ I G GRGSAAGSLV+Y L IT +DP+ ++L FERFLNPE
Sbjct: 361 KFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAGSLVSYCLRITDLDPIPYSLLFERFLNPE 420
Query: 355 RVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAE 414
RV E++ Y+ ++YG+D VAQ++TF L + +RDV + M+ +
Sbjct: 421 RVSMPDIDVDFCQDRRAEVIDYVIDKYGADKVAQVITFGKLLAKGVIRDVARVCDMSIQD 480
Query: 415 LSNLTRMLVRRFG-TLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGV 473
L +++ TL YE + K + ++ K ++E AR +EG+ R HA+GV
Sbjct: 481 ADELAKLVPEELKITLDAAYEKEPKIKEFIDRHPKGLEVWEYARALEGLNRNAGMHAAGV 540
Query: 474 VLSEESLVNYVSL----KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVK 529
V+S ESL L K E +TQY +E + L+K DFLGL+ LT+I+ L+K
Sbjct: 541 VISNESLWKKTPLFRQSKNDERHLVTQYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIK 600
Query: 530 RRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSI 589
+R DI I++ D ++GNT+GIFQ E+ M+ L P +F+DI+ ++
Sbjct: 601 KRYNKDIIWETIDVNDSKVYKTIQSGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLAL 660
Query: 590 FRPGP--SQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSL 647
+RPGP S + F+ R+HG + + DS+ ++L+PTYG+++YQEQ+MQ+ Q GFSL
Sbjct: 661 YRPGPMESGMLDDFIDRKHGLKSIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSL 720
Query: 648 GKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGF 707
G AD++RRA+ KK +++KL+ DF D A G+ + KAE++++LI +FA YGFN+SH
Sbjct: 721 GGADVVRRAMGKKDPEKMKKLKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSA 780
Query: 708 AYGALAFQIAYFKAHFPDEFYEIQLRDRKREV----MILDALEN-GFEIEKPSIN--LMK 760
AY + FQ AY K ++P EF L + V + +D ++ ++ PSIN + +
Sbjct: 781 AYALITFQTAYLKTYYPSEFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIRE 840
Query: 761 IGDFVKNKK--IRLGLAHVQGISRDLAKWIVE---NQPYKDLADFVEKLPNNFHKKENIL 815
++ K I GL ++ + + ++E + +KD+ DF+ K+ + +
Sbjct: 841 FSALEQDGKDAIIYGLGAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLE 900
Query: 816 PLIQIGAFDYADSNRGKLAYNLADHANLLNYYSDDIFMASSG--------GGFAYH---E 864
LI+ GAFD R L N+ + + ++ A+S G + +
Sbjct: 901 SLIKAGAFDEFGFTRKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPK 960
Query: 865 AEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEG----NFTPLAQLVKNRRMTILVEIN 920
E++ EK +EK +LGI V+ HPL + L N + + +I
Sbjct: 961 NEEFEVMEKLGYEKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIE 1020
Query: 921 YIRTHRTKTGQTMAFLTVSDSRENFDVTLF 950
++ +K + + + D +FD T+F
Sbjct: 1021 DFKSMMSKNNKRYGRIEILDYYSSFDATVF 1050
gb|AAC68147.1| (AE001325) DNA Pol III Alpha [Chlamydia trachomatis]
Length = 1237
Score = 401 bits (1020), Expect = e-110
Identities = 309/1106 (27%), Positives = 521/1106 (46%), Gaps = 135/1106 (12%)
Query: 4 PLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPIIS 63
PL+ ++YS LD+ + ++ A + + D GNL A F + ++ ++PII
Sbjct: 5 PLHCHSQYSILDATCSIKKFVAKAVEYQIPALALTDHGNLFGAVEFYKTCKQNAIKPIIG 64
Query: 64 IELNF---------EWRGLPIAFSFI--AKDTEGYKNLLRISTL---------------- 96
EL + R +A I KD EGY+NL +S+L
Sbjct: 65 CELYVAPSSRFDKKKERKSRVANHLILLCKDEEGYRNLCLLSSLAYTEGFYYVPRIDRDL 124
Query: 97 ---HNYGRRQFS----------------DIQNHLSGIALIIPETYGSLSELTELS----S 133
H+ G S D++ L + E + S +L + S +
Sbjct: 125 LSQHSKGLICLSACLSGSVAQAALESEEDLEKDLLWYQDLFQEDFFSEVQLHKSSEEKVA 184
Query: 134 VADEAFIGID--QLTDKGAKFN-----------LPTLPFPAIRYLNFAD---NEILAILH 177
+ +E ++ + Q +K K N +P++ I YLN D +EIL +
Sbjct: 185 LFEETWLKQNYYQFIEKQLKVNEAVLATSKRLGIPSVATNDIHYLNPDDWLAHEILLNVQ 244
Query: 178 AVRDGVSFDESLTISSNELLQRPEAYETYF---------LKYFPQALKNLSALTAKIAYQ 228
+ R+ + + T N + + E YF P+ + N + + +
Sbjct: 245 S-REPIRTAKQNTYIPNPKRKTYPSREFYFKSPQEIAELFAAHPETITNTCIVAERCHLE 303
Query: 229 FD-EKLELPRF-----DKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNL-------- 274
D E P + KK E R +A+ L E+ L ++ + L
Sbjct: 304 LDFETKHYPIYVPEALQKKGSYTEEERYKASSAFLEELCEQGLTSKYTPELLGHIAKKFP 363
Query: 275 --QDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYV 332
L++ +ERL+ E S+I G DY LIV D++ +A++ I G GRGS AGS++ ++
Sbjct: 364 GEDPLTLVKERLKLESSIIISKGMCDYLLIVWDIINWAKDHGIPVGPGRGSGAGSVMLFL 423
Query: 333 LGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTF 392
LGIT+++P++ +LFFERF+NPER+ ++ Y R+G D+VAQI+TF
Sbjct: 424 LGITEIEPIRFDLFFERFINPERISYPDIDIDICMIGRERVINYAIERHGKDNVAQIITF 483
Query: 393 STLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRI 452
T+ + A++DVG+ A+++ + + + T+ E + + + + + +
Sbjct: 484 GTMKAKMAIKDVGRTLDTPLAKVNFIAKHIPDLNATITSALEADPELRQLYVDDAEAAEV 543
Query: 453 YEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLAL--TQYEAPDVEAIGLLKI 510
++A+++EG R T HA+GV++ + L N++ + +D ++ TQY VE++G+LK+
Sbjct: 544 IDMAKKLEGSIRNTGVHAAGVIICGDPLTNHIPICVPKDSSMISTQYSMKPVESVGMLKV 603
Query: 511 DFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRR 570
DFLGL+ LT I + ++ I + I L+D++T +L G TMGIFQ E+ M+
Sbjct: 604 DFLGLKTLTGIHIATQAIYKKTGILLRAATIPLDDQNTFSLLHQGKTMGIFQMESRGMQD 663
Query: 571 FLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMI 630
+NL P F++I+ +++RPGP IP F+ R+HGKE + + ILK T+GIM+
Sbjct: 664 LAKNLRPDAFEEIIAIGALYRPGPMDMIPSFINRKHGKENIEYDHPLMEPILKETFGIMV 723
Query: 631 YQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIY 690
YQEQ+MQ+A + A +SLG+ D+LRRA+ KK ++ K RE F A+ NG A I+
Sbjct: 724 YQEQVMQIAGSLAKYSLGEGDVLRRAMGKKDHEQMVKEREKFCSRAAANGIDPSIATTIF 783
Query: 691 DLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKREV-----MILDAL 745
D +E+FA+YGFN+SH AYG + + AY KA++P E+ L ++ +I +A
Sbjct: 784 DKMEKFASYGFNKSHAAAYGLITYTTAYLKANYPKEWLAALLTCDYDDIEKVGKLIQEAH 843
Query: 746 ENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVE----NQPYKDLADFV 801
+ P IN K IR L V+G+ + IVE N PYK L DFV
Sbjct: 844 SMNILVLPPDINESGQDFEATQKGIRFSLGAVKGVGMSIVDSIVEEREKNGPYKSLQDFV 903
Query: 802 EKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLAD------------HANLLNYYS- 848
++ K+ + L+ G FD + N+ L D +L ++S
Sbjct: 904 QRADFKKVTKKQLENLVDAGTFDCFEPNKDLALAILNDLYDTFSREKKEAATGVLTFFSL 963
Query: 849 DDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNL-----------ARRF 897
D + + S E EK LLG+ +T HP+ + AR F
Sbjct: 964 DSMARDPVKITVSPENVIQRSPKELLKREKELLGVYLTAHPMDAVEHMLPFLSVVPARDF 1023
Query: 898 EGNFTPLAQLVKNRRMTILVEINYIRTHRTKTGQ-TMAFLTVSDSRENFDVTLFPEIYRQ 956
EG P +++ T+ + I+ + T + Q A L VSD +++++ ++ ++Y +
Sbjct: 1024 EG--LPHGTIIR----TVFL-IDKVTTKISSAEQKKFALLQVSDEVDSYELPIWADMYAE 1076
Query: 957 FSGELEQGKFYLISGKVTERNDELQL 982
+ LE+ + + R+D L+L
Sbjct: 1077 YRDLLEEDRLIYAILAIDRRSDSLRL 1102
sp|P14567|DP3A_SALTY DNA POLYMERASE III, ALPHA CHAIN >gi|482413|pir||A45915 DNA-directed
DNA polymerase (EC 2.7.7.7) III alpha chain - Salmonella
typhimurium >gi|153952 (M29701) polymerase III polymerase
subunit (dnaE) [Salmonella typhimurium]
Length = 1160
Score = 397 bits (1008), Expect = e-109
Identities = 308/1065 (28%), Positives = 503/1065 (46%), Gaps = 107/1065 (10%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L ++YS +D + K ++ A LG + I D NL +F ++PI
Sbjct: 6 FVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65
Query: 62 ISIELNF--EWRGLPIA-FSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQNH------L 111
+ + N E G + + +A + GY+NL L IS + G I
Sbjct: 66 VGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK 125
Query: 112 SGIALIIPETYGSLSELTELSSVA--------------DEAFIGI------DQLTDKGAK 151
G+ L+ G + + A D F+ + D+ T A
Sbjct: 126 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 185
Query: 152 FNL------PTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTIS--SNELLQRPEAY 203
L P + +R+L D + I A+ DG + D+ S + R E
Sbjct: 186 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245
Query: 204 ETYFLKYFPQALKNLSALTAK--IAYQFDEKLELPRFDKKRQAVE-HLREEATLGLSARL 260
P+AL+N + + + + E LP+F E +L ++A GL RL
Sbjct: 246 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-LPQFPTGDMTTEDYLVKKAKEGLEERL 304
Query: 261 EEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMG 320
L + Y ERL+ EL VI+QMGF YFLIV + ++++++ + G G
Sbjct: 305 A---FLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361
Query: 321 RGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNR 380
RGS AGSLVAY L IT +DP++ +L FERFLNPERV +++ ++ +
Sbjct: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADM 421
Query: 381 YGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-TLADEYENNQRF 439
YG D V+QI+TF T+ + +RDVG+ G + +++++ G TLA +E +
Sbjct: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQL 481
Query: 440 KAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSED--LALTQY 497
+ +++ + ++AR++EG+ R HA GVV++ + ++ L E+ +TQ+
Sbjct: 482 PEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541
Query: 498 EAPDVEAIGLLKIDFLGLRNLTIISRLRDLV-KRRQKIDIDPLKIN---LEDEDTLALFR 553
+ DVE GL+K DFLGLR LTII+ +++ KRR K PL I L+D+ + + +
Sbjct: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601
Query: 554 AGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--FIPQFVARRHGKEIV 611
T +FQ E+ M+ ++ L P F+D++ ++FRPGP Q + F+ R+HG+E +
Sbjct: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEL 661
Query: 612 PTVD-----DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELE 666
D +S+ +L+PTYGI++YQEQ+MQ+AQ +G++LG AD+LRRA+ KKK E+
Sbjct: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721
Query: 667 KLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDE 726
K R F + A NG E A +I+DL+E+FA YGFN+SH AY +++Q + KAH+P E
Sbjct: 722 KQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781
Query: 727 FYEIQL---RDRKREV--MILDALENGFEIEKPSINLMKIGDFVKNK-KIRLGLAHVQGI 780
F + D +V ++ + G +I P IN V ++ +I G+ ++G+
Sbjct: 782 FMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGV 841
Query: 781 SRDLAKWIVE--NQP--YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYN 836
+ I++ NQ +++L D + + + LI GAFD +R L +
Sbjct: 842 GEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901
Query: 837 LAD-------HANLLNYYSDDIF--MASSGGGF--AYHEAEDYSETEKYDFEKNLLGIGV 885
L D HA D+F +A +Y + + E D E+ LG+ +
Sbjct: 902 LGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961
Query: 886 TPHPLQNLARRFE----------------GNFTPLAQLVKNRRMTILVEINYIRTHRTKT 929
T HP+ + E G T A LV R+ + TK
Sbjct: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMV-----------TKR 1010
Query: 930 GQTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974
G + T+ D +V LF + ++ LE+ + ++SG+V+
Sbjct: 1011 GNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055
gb|AAD16978| (AF108191) DNA polymerase III alpha subunit [Streptomyces coelicolor]
>gi|5596809|emb|CAB51456.1| (AL096884) putative DNA
polymerase III alpha chain [Streptomyces coelicolor
A3(2)]
Length = 1179
Score = 394 bits (1002), Expect = e-108
Identities = 309/1115 (27%), Positives = 504/1115 (44%), Gaps = 163/1115 (14%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ T+YS LD ++ D + + +G + + D GNLH A+ F A+K + PI
Sbjct: 6 FTHLHVHTQYSLLDGAARLKDMFDACNEMGMSHIAMSDHGNLHGAYDFFHSAKKAGVTPI 65
Query: 62 ISIEL-----------NFEWRGLP-------------IAFSFIAKDTEGYKNLLRIST-- 95
I IE +W G P + A +++G NL R+S+
Sbjct: 66 IGIEAYVAPESRRNKRKIQW-GQPHQKRDDVSGSGGYTHKTMWATNSKGLHNLFRLSSDA 124
Query: 96 -----LHNYGRRQFSDIQNHLSGIALIIPETYGSLSELTELSSVADEAFIGIDQLTDKGA 150
L + R I GI G + L DEA D
Sbjct: 125 YAEGWLQKWPRMDKETISQWSEGIVASTGCPSGEVQTRLRLGHF-DEALKAAADYQDIFG 183
Query: 151 KFNLPTLPFPAIRYLNFADNEILAILHAVRDGV--------------------------S 184
K +L D+ I I H VRDG+ +
Sbjct: 184 KDRY---------FLELMDHGI-EIEHRVRDGLLEIGRKLGIPPLVTNDSHYTYAHEATA 233
Query: 185 FDESLTISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQ---------------- 228
D L I + + L P+ + Y+ ++ + A+ + A+Q
Sbjct: 234 HDALLCIQTGKNLSDPDRFRFDGTGYYLKSTDEMYAIDSSDAWQEGCANTRLIAEMIDTT 293
Query: 229 --FDEKLELPRFDKKRQAVE--HLREEATLGLSARL-----EEKNLLTEVSSVNLQDLSV 279
F+++ +P+FD E +EE G+ R E++
Sbjct: 294 GMFEKRDLMPKFDIPEGFTEITWFQEEVRRGMERRFPGGVPEDR---------------- 337
Query: 280 YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVD 339
Q++ E E+ VI QMGF YFL+VAD + +A+ Q I G GRGSAAGS+VAY +GIT +D
Sbjct: 338 -QKQAEYEMDVIIQMGFPGYFLVVADFIMWAKNQGIAVGPGRGSAAGSIVAYAMGITDLD 396
Query: 340 PVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQ 399
P+ H L FERFLNPERV E++ Y+ +YG+D VA I T+ + +
Sbjct: 397 PIPHGLIFERFLNPERVSMPDVDIDFDERRRVEVIRYVTEKYGADKVAMIGTYGKIKAKN 456
Query: 400 ALRDVGKAFGMTEAELSNLTR-MLVRRFGTLAD----------EYENNQRFKAEVLKNGK 448
A++D + G A LT+ M G D Y ++
Sbjct: 457 AIKDSARVLGYPYAMGDRLTKAMPADVLGKGIDLNGITDPTHPRYSEAGEIRSMYESEPD 516
Query: 449 LKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNY--VSLKPSEDLALTQYEAPDVEAIG 506
+K++ + A+ +EG+ RQ HA+GV++S E +V++ + ++ ++ + +TQ++ P E++G
Sbjct: 517 VKKVIDTAKGVEGLVRQMGVHAAGVIMSSEPIVDHAPIWVRHTDGVTITQWDYPQCESLG 576
Query: 507 LLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENP 566
LLK+DFLGLRNLTI+ +VK + ID+D L + L+D T L + G+T+G+FQF+
Sbjct: 577 LLKMDFLGLRNLTIMDDAVKMVKSNKGIDLDLLSLPLDDPTTFELLQRGDTLGVFQFDGG 636
Query: 567 QMRRFLRNLAPSKFDDIVDATSIFRPGP--SQFIPQFVARRHG-KEIVP---TVDDSISE 620
MR LR + P F+DI ++++RPGP + R++G +EI P +++ + E
Sbjct: 637 PMRSLLRLMKPDNFEDISAVSALYRPGPMGMDSHTNYALRKNGLQEITPIHKELEEPLQE 696
Query: 621 ILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNG 680
+L TYG+++YQEQ+ + AQ AG+SLG+AD+LRR + KKK EL K F A NG
Sbjct: 697 VLAVTYGLIVYQEQVQKAAQIIAGYSLGEADILRRVMGKKKPDELAKNFVLFQAGARKNG 756
Query: 681 HSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKRE-- 738
+S E + ++D++ FA Y FN++H AYG +++ Y KA++P E+ L K +
Sbjct: 757 YSDEAIQALWDVLVPFAGYAFNKAHSAAYGLVSYWTGYLKANYPAEYMAALLTSVKDDKD 816
Query: 739 ---VMILDALENGFEIEKPSINLMKIGDFVK--NKKIRLGLAHVQGISRDLAKWIVE--- 790
V + + G ++ P++N + +F + I GL+ V+ + ++ + I++
Sbjct: 817 KSAVYLNECRRMGIKVLPPNVN-ESMSNFAAQGDDVILFGLSAVRNVGTNVVESIIKCRK 875
Query: 791 -NQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYN---LADHA----- 841
Y D+++K+ K LI+ GAFD R L + D+
Sbjct: 876 AKGKYASFPDYLDKVEAVVCNKRTTESLIKAGAFDEMGHTRKGLTAQYEPMIDNVVAVKR 935
Query: 842 -------NLLNYYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLA 894
+L D+ G +++ +T E+ +LG+ V+ HPL L
Sbjct: 936 KEAEGQFDLFGGMGDEQSDEPGFGLDVVFGEDEWDKTYLLAQEREMLGLYVSDHPLFGLE 995
Query: 895 RRFEGNF-TPLAQLV-----KNRRMTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVT 948
++QL +TI I+ ++ TK G A TV D + +
Sbjct: 996 HVLSDKADAGISQLTGGDFGDGAVVTIGGIISGLQRKMTKQGNAWAIATVEDLAGSLECM 1055
Query: 949 LFPEIYRQFSGELEQGKFYLISGKVTERNDELQLV 983
FP Y+ S +L + + G++ +R D +LV
Sbjct: 1056 FFPATYQLVSTQLVEDAVVFVKGRLDKREDVPRLV 1090
gi|154271 (M26046) DNA polymerase III alpha subunit [Salmonella typhimurium]
Length = 1160
Score = 394 bits (1001), Expect = e-108
Identities = 303/1054 (28%), Positives = 500/1054 (46%), Gaps = 85/1054 (8%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L ++YS +D + K ++ A LG + I D NL +F ++PI
Sbjct: 6 FVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65
Query: 62 ISIELNF--EWRGLPIA-FSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQNH------L 111
+ + N E G + + +A + GY+NL L IS + G I
Sbjct: 66 VGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELK 125
Query: 112 SGIALIIPETYGSLSELTELSSVA--------------DEAFIGI------DQLTDKGAK 151
G+ L+ G + + A D F+ + D+ T A
Sbjct: 126 EGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAA 185
Query: 152 FNL------PTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTIS--SNELLQRPEAY 203
L P + +R+L D + I A+ DG + D+ S + R E
Sbjct: 186 VELAEARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245
Query: 204 ETYFLKYFPQALKNLSALTAK--IAYQFDEKLELPRFDKKRQAVE-HLREEATLGLSARL 260
P+AL+N + + + + E LP+F E +L ++A GL RL
Sbjct: 246 MCELFSDIPEALENTVEIAKRCNVTVRLGEYF-LPQFPTGDMTTEDYLVKKAKEGLEERL 304
Query: 261 EEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMG 320
L + Y ERL+ EL VI+QMGF YFLIV + ++++++ + G G
Sbjct: 305 A---FLFPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG 361
Query: 321 RGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNR 380
RGS AGSLVAY L IT +DP++ +L FERFLNPERV +++ ++ +
Sbjct: 362 RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVSFCMEKRDQVIEHVADM 421
Query: 381 YGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFG-TLADEYENNQRF 439
YG D V+QI+TF T+ + +RDVG+ G + +++++ G TLA +E +
Sbjct: 422 YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQL 481
Query: 440 KAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSED--LALTQY 497
+ +++ + ++AR++EG+ R HA GVV++ + ++ L E+ +TQ+
Sbjct: 482 PEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQF 541
Query: 498 EAPDVEAIGLLKIDFLGLRNLTIISRLRDLV-KRRQKIDIDPLKIN---LEDEDTLALFR 553
+ DVE GL+K DFLGLR LTII+ +++ KRR K PL I L+D+ + + +
Sbjct: 542 DKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQ 601
Query: 554 AGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQ--FIPQFVARRHGKEIV 611
T +FQ E+ M+ ++ L P F+D++ ++FRPGP Q + F+ R+HG+E +
Sbjct: 602 RSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEL 661
Query: 612 PTVD-----DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELE 666
D +S+ +L+PTYGI++YQEQ+MQ+AQ +G++LG AD+LRRA+ KKK E+
Sbjct: 662 SYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMA 721
Query: 667 KLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDE 726
K R F + A NG E A +I+DL+E+FA YGFN+SH AY +++Q + KAH+P E
Sbjct: 722 KQRSVFEEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE 781
Query: 727 FYEIQL---RDRKREV--MILDALENGFEIEKPSINLMKIGDFVKNK-KIRLGLAHVQGI 780
+ D +V ++ + G +I P IN V ++ +I G+ ++G+
Sbjct: 782 IMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGV 841
Query: 781 SRDLAKWIVE--NQP--YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYN 836
+ I++ NQ +++L D + + + LI GAFD +R L +
Sbjct: 842 GEGPIEAIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNS 901
Query: 837 LAD-------HANLLNYYSDDIF--MASSGGGF--AYHEAEDYSETEKYDFEKNLLGIGV 885
L D HA D+F +A +Y + + E D E+ LG+ +
Sbjct: 902 LGDALKAADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYL 961
Query: 886 TPHPLQNLARRFEG-----NFTPLAQLVKNRRMTILVEINYIRTHRTKTGQTMAFLTVSD 940
T HP+ + E + + + T + R TK G + T+ D
Sbjct: 962 TGHPINQYLKEIERYVGGVRLKDMHPTERGKVTTASGLVIAARVMVTKRGNRIGICTLDD 1021
Query: 941 SRENFDVTLFPEIYRQFSGELEQGKFYLISGKVT 974
+V LF + ++ LE+ + ++SG+V+
Sbjct: 1022 RSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVS 1055
gb|AAF10085.1|AE001909_7 (AE001909) DNA polymerase III, alpha subunit [Deinococcus
radiodurans]
Length = 1335
Score = 390 bits (990), Expect = e-107
Identities = 245/755 (32%), Positives = 389/755 (51%), Gaps = 53/755 (7%)
Query: 283 RLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQ 342
R E ELSVI+ MGF DYFLIVAD + +A++ DI G GRGS AGSLVAY + IT +DP++
Sbjct: 473 RAEYELSVINNMGFPDYFLIVADYINWAKDHDISVGPGRGSGAGSLVAYAIRITNLDPLE 532
Query: 343 HNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALR 402
L FERFLNP+R+ E++ Y++ +YG+D VAQI TF T+ + L+
Sbjct: 533 FELLFERFLNPDRISMPDFDIDFNDARRTEVIGYVQEKYGTDKVAQIATFGTMASKACLK 592
Query: 403 DVGKAFGMTEAELSNLTRMLVRRFG---TLADEYENNQRFKAEVLKNGKLKRIYEVARRI 459
DV + G+ A++ +++++ +FG +L E + + ++ +L YE A+++
Sbjct: 593 DVARVMGLEYAKVDKVSKLIPIKFGKSYSLEQAREAVPDIQQMLAEDAQLLEAYEFAQKL 652
Query: 460 EGMPRQTSTHASGVVLSEESLVNYVSL--KPSEDLALTQYEAPDVEAIGLLKIDFLGLRN 517
EG+ R S HA+GVV+ E L N V + S + + QY+ VE IGL+K+DFLGLR
Sbjct: 653 EGLTRHASVHAAGVVIGREELTNLVPVMRDTSGEGQVCQYDMKSVEDIGLIKMDFLGLRT 712
Query: 518 LTIISRLRDLVK------RRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRF 571
L+ + + +++ + D D I +DE T L G+T G+FQ E +
Sbjct: 713 LSFLDEAKRILRESGTDFEEKYGDFD--HIPFDDEKTYELMSRGDTKGVFQLEGAGIADA 770
Query: 572 LRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIV-------PTVDDSISEILKP 624
R L P + DI+ ++++RPGP + IP +V R HG E V P + +IL+
Sbjct: 771 SRRLKPRRLADIIALSALYRPGPMENIPTYVRRHHGIEEVDYDKDGFPNSKQWLEKILQE 830
Query: 625 TYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKE 684
TYGI +YQEQIMQ+A AG+SLG ADLLRRA+ KK E+++ R+ F+ A G ++
Sbjct: 831 TYGIPVYQEQIMQIASEVAGYSLGGADLLRRAMGKKDAEEMKRQRQLFVVGAKEKGVPED 890
Query: 685 KAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKRE-----V 739
+ +++D+++ FANYGFN+SH AYG + +Q A+ KA++P +F L +R+
Sbjct: 891 EGNKLFDMLDAFANYGFNKSHSAAYGVITYQTAWLKANYPVQFMAALLTVERRDSDKVAE 950
Query: 740 MILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQ----PYK 795
+ DA + + P IN V ++I GL ++G+ I+E + +K
Sbjct: 951 YVSDARKMDLHVLPPDINRSSSDFAVAGEEILFGLYAIKGLGESAVLRILEEREKAGAFK 1010
Query: 796 DLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHANLLNYYSDDIFMAS 855
LADF +L N ++ + LI+ GAFD A R +L +L D ++ A
Sbjct: 1011 SLADFCSRLGNKVCNRKALESLIKSGAFD-AFGERHQLIESLEDALEDAAGTAEINARAQ 1069
Query: 856 SGGGFAYHEAE------------DYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTP 903
SG + E YS+ E+ EK LG+ ++ HPL+ E
Sbjct: 1070 SGMSMMFGMEEVKKERPLRSSIAPYSDLERLAIEKEALGLYISGHPLEQHEGLREAASCR 1129
Query: 904 LAQL-----------VKNRRMTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPE 952
++ L K ++ + I + TK+G MA ++D ++ F
Sbjct: 1130 VSDLDAWFALQNVAPGKRQKAVLAGMIEGVVKKPTKSGGMMARFILADESGQMELVAFSR 1189
Query: 953 IYRQFSGELEQGKFYLISGKVTERNDELQLVTDRI 987
Y + +L L+ ++ + L+ + + I
Sbjct: 1190 AYDRIEPKLVNDTPALVIVELEAEDGGLRAIAEEI 1224
Score = 46.9 bits (109), Expect = 9e-04
Identities = 35/113 (30%), Positives = 53/113 (45%), Gaps = 20/113 (17%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQ----TVGICDVGNLHAAFRFVRKAQKFN 57
FA L+ T+YS LD K+ D L+ A + + + + D GN+H A F A
Sbjct: 24 FAHLHQHTQYSLLDGAAKLKDLLKWAKEVTPEGQTPALAMTDHGNMHGAVHFYNYAMGME 83
Query: 58 LQPIISIEL----NFEWR-----------GLPIAFSFIAKDTEGYKNLLRIST 95
++PII E F R G+ + +A+D EGY+NL R+S+
Sbjct: 84 VKPIIGYEAYVVPGFGTRRDRSRAQDGEKGI-FHLTLLARDFEGYQNLCRLSS 135
sp|O05974|DP3A_RICPR DNA POLYMERASE III, ALPHA CHAIN >gi|3861305|emb|CAA15204| (AJ235273)
DNA POLYMERASE III, ALPHA CHAIN (dnaE) [Rickettsia
prowazekii]
Length = 1182
Score = 381 bits (969), Expect = e-104
Identities = 303/1071 (28%), Positives = 505/1071 (46%), Gaps = 131/1071 (12%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L T++ YSFL+S + ++ +E A + + D GNL + F A K LQPI
Sbjct: 5 FIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQPI 64
Query: 62 ISIELNFEWRGLPIA-FSFIAKDTEGYKNLLRISTLHNYGRRQ-------FSDIQNHLSG 113
+ LN ++ A IAKD GYKNLL++S+L + F D+ + G
Sbjct: 65 HGVILNIQYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICEHIGFEDLIKYQEG 124
Query: 114 IALIIPETYGSLS--------ELTELSSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYL 165
+ + T G + E L + +A +G D+ + + +LP F Y+
Sbjct: 125 VIALCCYTDGIVGKCLLARKQEQAILFARRLQAILG-DRFYFEIMRHDLPEEQFIENSYI 183
Query: 166 NFAD---------NEILA----------ILHAVRDGVS--FDESLTISSNELLQRPEAYE 204
A N++L +L + +GV+ + + T+S N + P
Sbjct: 184 QIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVSENCYFKSPAEMR 243
Query: 205 TYFLKYFPQALKNLSALTAKIAYQFDEKLE-LPRFDKKRQAVEHL-REEATLGLSARLEE 262
F P A++N L + + LP F + + +L R+ AT GL ARL
Sbjct: 244 KLFSD-LPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDISETYLIRKYATEGLLARLVT 302
Query: 263 KNLLTEVSSVNLQDLSV-YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGR 321
K +S + + L Y RL EL +I M F YFLIV+D ++++++Q I G GR
Sbjct: 303 KFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKKQGILVGPGR 362
Query: 322 GSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRY 381
GS AGS+VA+ L IT +DP++ L FERFLNPER+ E++ Y++++Y
Sbjct: 363 GSGAGSVVAWSLLITDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKY 422
Query: 382 GSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRML-------------VRRFGT 428
G + V QI+TF + + ++DV + + LT ++ +R
Sbjct: 423 GPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVPFSAINPVSLEQAIREVPE 482
Query: 429 LADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL-- 486
LA+ + N + E +K + + + +EG+ R +STHA+G+V++ LV+ V +
Sbjct: 483 LANAAKGNGLYNLEGDAE-LIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYK 541
Query: 487 KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQ-KIDIDPLKINLED 545
+ D+ + Y E GL+K DFLGL+ LT+I+ + L+K + KID D + +D
Sbjct: 542 DANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIKIDFDDM--TFDD 599
Query: 546 EDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARR 605
+ T + G +G+FQFE+ M+ LR L P D++ +++RPGP + IP ++A +
Sbjct: 600 KKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACK 659
Query: 606 HGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSEL 665
H + + + IL+ TYG++IYQEQ+ ++AQ AG++LG ADLLRRA+ KK E+
Sbjct: 660 HKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEM 719
Query: 666 EKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPD 725
E+ E F+ A N S +A+ I+ + +FA YGFN++H AYG +++Q AY KA++P
Sbjct: 720 EEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPA 779
Query: 726 EF----YEIQLRDR-KREVMILDALENGFEIEKPSINLMKIGDFVKN------------- 767
EF ++L + K + + +A +NG +I P+IN+ + VK+
Sbjct: 780 EFLVACLNLELNNHDKINLFLQEAKDNGIKIIAPNINISEGYFSVKSSNTVITHSTKSVI 839
Query: 768 -------KKIR-----------------LGLAHVQGISRDLAKWIVENQ----PYKDLAD 799
KKI L ++G++ + K + + + +K + D
Sbjct: 840 SRLNCDIKKIAKDTAVKPLYCKDESTIIFALGAIKGVTANFGKLVTDERKARGAFKSITD 899
Query: 800 FVEKLPNNFHKKENILPLIQIGAFDYADSNRGKL--------AYNLADHANLLNYYSDDI 851
F+E+LP + + LI+ G FD NR +L AY+ + H + I
Sbjct: 900 FIERLPPKSINSKLLENLIKAGCFDELHDNRLQLFLSIPKLIAYSTSYHQEQESNQFSLI 959
Query: 852 FMASSGGGFAYHEAEDYSETEKYDF-EKNLLGIGVTPHPLQNLARRFEGNFTPL------ 904
++S + DY++ F E +G+ ++ HPL ++G F+ L
Sbjct: 960 KVSSLSPTILV--SSDYADKNTLAFYEFEAMGLFLSNHPL----TEYQGIFSRLNILNTR 1013
Query: 905 ---AQLVKNRRMTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPE 952
+L L + + R L +SD F++T+F E
Sbjct: 1014 DLYNKLPNGTNRVTLAGVIQKKDSRMSARGRFVTLVLSDPENIFELTIFSE 1064
sp|Q10779|DP3A_MYCTU PROBABLE DNA POLYMERASE III, ALPHA CHAIN >gi|1403495|emb|CAA98315|
(Z74020) dnaE1 [Mycobacterium tuberculosis]
Length = 1184
Score = 381 bits (967), Expect = e-104
Identities = 255/811 (31%), Positives = 405/811 (49%), Gaps = 72/811 (8%)
Query: 280 YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVD 339
Y+ER E+ VI GF YFLIVADL+ YAR I G GRGSAAGSLVAY LGIT +D
Sbjct: 341 YRERAAYEIDVICSKGFPSYFLIVADLISYARSAGIRVGPGRGSAAGSLVAYALGITDID 400
Query: 340 PVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQ 399
P+ H L FERFLNPER E++ Y +++G D VAQ++TF T+ +
Sbjct: 401 PIPHGLLFERFLNPERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKA 460
Query: 400 ALRDVGK------AFGMTEAELSNLTRMLVRRFGTLA-------DEYENNQRFKAEVLKN 446
AL+D + F + + L ++ + L+ + Y+ + + +
Sbjct: 461 ALKDSARIHYGQPGFAIADRITKALPPAIMAKDIPLSGITDPSHERYKEAAEVRGLIETD 520
Query: 447 GKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL--KPSEDLALTQYEAPDVEA 504
++ IY+ AR +EG+ R HA V++S E L + L +P + +T ++ P EA
Sbjct: 521 PDVRTIYQTARGLEGLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAIITGWDYPACEA 580
Query: 505 IGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFE 564
IGLLK+DFLGLRNLTII D V+ + ID+D + L+D+ T L G+T+G+FQ +
Sbjct: 581 IGLLKMDFLGLRNLTIIGDAIDNVRANRGIDLDLESVPLDDKATYELLGRGDTLGVFQLD 640
Query: 565 NPQMRRFLRNLAPSKFDDIVDATSIFRPGP------SQFIPQFVARRHGKEIVPTVDDSI 618
MR LR + P+ F+D+V +++RPGP + + + R+ K I P +++ +
Sbjct: 641 GGPMRDLLRRMQPTGFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPL 700
Query: 619 SEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASH 678
EIL TYG+++YQEQIM++AQ A +SL +AD+LR+A+ KKK LEK E F D
Sbjct: 701 REILAETYGLIVYQEQIMRIAQKVASYSLARADILRKAMGKKKREVLEKEFEGFSDGMQA 760
Query: 679 NGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRD---- 734
NG S + ++D I FA+Y FN+SH YG +++ AY KA++P E+ L
Sbjct: 761 NGFSPAAIKALWDTILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDD 820
Query: 735 -RKREVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQ- 792
K V + D + G + P +N + + IR GL V+ + ++ +++ +
Sbjct: 821 KDKAAVYLADCRKLGITVLPPDVNESGLNFASVGQDIRYGLGAVRNVGANVVGSLLQTRN 880
Query: 793 ---PYKDLADFVEKLPNNFHKKENILPLIQIGAFD------------YADSNRGKLAYNL 837
+ D +D++ K+ + K+ LI+ GAFD ++D+ L
Sbjct: 881 DKGKFTDFSDYLNKIDISACNKKVTESLIKAGAFDSLGHARKGLFLVHSDAVDSVLGTKK 940
Query: 838 ADHANLLNYY-SDDIFMASSGGGFAYHEAED-YSETEKYDFEKNLLGIGVTPHPLQNLAR 895
A+ + + S+D ++ F +D + + K E+ +LG+ V+ HPL +A
Sbjct: 941 AEALGQFDLFGSNDDGTGTADPVFTIKVPDDEWEDKHKLALEREMLGLYVSGHPLNGVAH 1000
Query: 896 R------------FEGNFTPLAQLVKNRRMTILVEINYIRTHRTKTGQTMAFLTVSDSRE 943
+G+ AQ+ R IL +N K G A + D
Sbjct: 1001 LLAAQVDTAIPAILDGDVPNDAQV---RVGGILASVN---RRVNKNGMPWASAQLEDLTG 1054
Query: 944 NFDVTLFPEIYRQFSGELEQGKFYLISGKVTERNDELQLVTDRIS----PALETDRKLWL 999
+V FP Y + ++ L++ KV R+D + L+ + ++ E +R L +
Sbjct: 1055 GIEVMFFPHTYSSYGADIVDDAVVLVNAKVAVRDDRIALIANDLTVPDFSNAEVERPLAV 1114
Query: 1000 NLRD-----DKYNQKISQILREFPGSHQVIL 1025
+L DK + + Q+L PG+ QV L
Sbjct: 1115 SLPTRQCTFDKVS-ALKQVLARHPGTSQVHL 1144
Score = 53.5 bits (126), Expect = 9e-06
Identities = 40/145 (27%), Positives = 58/145 (39%), Gaps = 30/145 (20%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ TEYS LD K+ L RLG VG+ D GN+ A F A K ++PI
Sbjct: 10 FVHLHNHTEYSMLDGAAKITPMLAEVERLGMPAVGMTDHGNMFGASEFYNSATKAGIKPI 69
Query: 62 ISIEL------NFEWR-----------------GLPIAFSFIAKDTEGYKNLLRIST--- 95
I +E F+ R G + +A++ G +NL ++S+
Sbjct: 70 IGVEAYIAPGSRFDTRRILWGDPSQKADDVSGSGSYTHLTMMAENATGLRNLFKLSSHAS 129
Query: 96 ----LHNYGRRQFSDIQNHLSGIAL 116
L + R I H GI +
Sbjct: 130 FEGQLSKWSRMDAELIAEHAEGIII 154
emb|CAA72479| (Y11785) DNA polymerase III alpha subunit [Rickettsia prowazekii]
Length = 780
Score = 354 bits (899), Expect = 2e-96
Identities = 244/781 (31%), Positives = 397/781 (50%), Gaps = 61/781 (7%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L T++ YSFL+S + ++ +E A + + D GNL + F A K LQPI
Sbjct: 5 FIHLRTQSSYSFLESALTIEKVVELALLHKMPALCLSDRGNLFGSLEFSLYAVKKKLQPI 64
Query: 62 ISIELNFEWRGLPIA-FSFIAKDTEGYKNLLRISTLHNYGRRQ-------FSDIQNHLSG 113
+ LN ++ A IAKD GYKNLL++S+L + F D+ + G
Sbjct: 65 HGVILNIQYDINAFAQILLIAKDETGYKNLLKLSSLTFTKNDRKICEHIGFEDLIKYQEG 124
Query: 114 IALIIPETYGSLS--------ELTELSSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYL 165
+ + T G + E L + +A +G D+ + + +LP F Y+
Sbjct: 125 VIALCCYTDGIVGKCLLARKQEQAILFARRLQAILG-DRFYFEIMRHDLPEEQFIENSYI 183
Query: 166 NFAD---------NEILA----------ILHAVRDGVS--FDESLTISSNELLQRPEAYE 204
A N++L +L + +GV+ + + T+S N + P
Sbjct: 184 QIASELSIPIVATNKVLFSEKSMHYAHDVLLCISEGVTKEYPDRKTVSENCYFKSPAEMR 243
Query: 205 TYFLKYFPQALKNLSALTAKIAYQFDEKLE-LPRFDKKRQAVEHL-REEATLGLSARLEE 262
F P A++N L + + LP F + + +L R+ AT GL ARL
Sbjct: 244 KLFSD-LPNAIQNTINLRERCYFAAHPNPPMLPNFSTQDISETYLIRKYATEGLLARLVT 302
Query: 263 KNLLTEVSSVNLQDLSV-YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGR 321
K +S + + L Y RL EL +I M F YFLIV+D ++++++Q I G GR
Sbjct: 303 KFKAENISLEHQEKLKTEYFTRLNYELDIICNMNFAGYFLIVSDFIKWSKKQGILVGPGR 362
Query: 322 GSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRY 381
GS AGS+VA+ L +T +DP++ L FERFLNPER+ E++ Y++++Y
Sbjct: 363 GSGAGSVVAWSLLVTDLDPIKFGLLFERFLNPERISMPDFDIDFCQERREEVINYVRSKY 422
Query: 382 GSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRML-------------VRRFGT 428
G + V QI+TF + + ++DV + + LT ++ +R
Sbjct: 423 GPNRVGQIITFGKMQAKAVIKDVARVLSLPYKLADYLTELVPFSAINPVSLEQAIREVPE 482
Query: 429 LADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL-- 486
LA+ + N + E +K + + + +EG+ R +STHA+G+V++ LV+ V +
Sbjct: 483 LANAAKGNGLYNLEGDAE-LIKLVLDTSLILEGLHRHSSTHAAGIVIAGTDLVDIVPVYK 541
Query: 487 KPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQ-KIDIDPLKINLED 545
+ D+ + Y E GL+K DFLGL+ LT+I+ + L+K + KID D + +D
Sbjct: 542 DANADMLIVGYSMKYSEIAGLIKFDFLGLQTLTVITNCKKLLKEQGIKIDFDDM--TFDD 599
Query: 546 EDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARR 605
+ T + G +G+FQFE+ M+ LR L P D++ +++RPGP + IP ++A +
Sbjct: 600 KKTYQMLCKGKGVGVFQFESIGMKDALRRLKPDSIHDLIALGALYRPGPMENIPTYIACK 659
Query: 606 HGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSEL 665
H + + + IL+ TYG++IYQEQ+ ++AQ AG++LG ADLLRRA+ KK E+
Sbjct: 660 HKLQQPDYLHKLLEPILEETYGVVIYQEQVQRIAQVLAGYTLGAADLLRRAMGKKIKKEM 719
Query: 666 EKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPD 725
E+ E F+ A N S +A+ I+ + +FA YGFN++H AYG +++Q AY KA++P
Sbjct: 720 EEQEEIFVKGAIANNISPSQAKSIFSTVAKFAGYGFNKAHAAAYGVISYQTAYLKANYPA 779
Query: 726 E 726
E
Sbjct: 780 E 780
sp|P74750|DP3A_SYNY3 DNA POLYMERASE III, ALPHA CHAIN >gi|1653960|dbj|BAA18870| (D90917)
DNA polymerase III alpha subunit [Synechocystis sp.]
Length = 897
Score = 336 bits (853), Expect = 5e-91
Identities = 239/782 (30%), Positives = 385/782 (48%), Gaps = 94/782 (12%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ ++YS LD ++ ++ A LG + + D G ++ A ++ + ++PI
Sbjct: 3 FVGLHIHSDYSLLDGASQLPALIDRAIELGMPAIALTDHGVMYGAVELLKVCRGKPIKPI 62
Query: 62 IS---------IELNFEWRGLPIAFSFIAKDTEGYKNLLRISTLHNYGRRQFSDI----- 107
I IE+N R +AK+ +GY+NL++++T+ N Q S I
Sbjct: 63 IGNEMYVINGDIEINKRHRRFHQVV--LAKNNQGYRNLVKLTTISNLKGIQGSGIFARPC 120
Query: 108 ------QNHLSGIALI-------IPETY--GSLSELTELSS-----VADEAFIGIDQ--- 144
+ + G+ + +P+ G L +++ D+ ++ I
Sbjct: 121 INKELLEQYKEGLIVTSACLGGEVPQAILKGDLDHARQVAKWYKNLFGDDYYLEIQDHGS 180
Query: 145 LTDKGAKFNLPTLPFPA---------IRYLNFADNEILAILHAVRDG--VSFDESLTISS 193
+ D+ NL + +++ D E L ++ G ++ ++ L S
Sbjct: 181 VEDRLVNINLVKIAQELDIKIVATNDSHFISCNDVEAHDALLCIQTGKLITEEKRLRYSG 240
Query: 194 NELLQRPEAYETYFLKYFPQ-----ALKNLSALTAKI-AYQFDEKLELPRFD--KKRQAV 245
E L+ E F + P A+ N + K+ AY + +P +
Sbjct: 241 TEYLKSAEEMHLLFRDHLPDDIIETAIANTLEVADKVEAYSILGEPRIPHYPIPPNHTPE 300
Query: 246 EHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVAD 305
++ + A GL RL+ + VY+ERLE EL ++ +MGF YFL+V D
Sbjct: 301 TYVEDIAWDGLLERLKCRE--------RADITPVYKERLEYELRMLEKMGFCTYFLVVWD 352
Query: 306 LLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXX 365
++YAR+ I G GRGSAAGSLVAY + IT +DPV H L FERFLNPER
Sbjct: 353 YIKYARDHGIPVGPGRGSAAGSLVAYCMKITNIDPVHHGLIFERFLNPERKSMPDVDTDF 412
Query: 366 XXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRML--- 422
E++ Y+ +YG D VAQI+TF+ + + L+DV + + AE + +M+
Sbjct: 413 CIDRRDEMIEYVTQKYGEDKVAQIITFNRMTSKAVLKDVARVLDIPYAESDKMAKMIPVS 472
Query: 423 ---VRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVLSEES 479
+ + + +FKA +K+ ++A RIEG + HA+GVV+S E
Sbjct: 473 RGKPAKLKVMISDQTPEPQFKARYDNEPWVKKWIDMAIRIEGTNKTFGVHAAGVVISSEP 532
Query: 480 LVNYVSLKPSEDLA-LTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDP 538
L V L+ + D A +TQY DVEA+GLLK+DFLGL+NLT + R +LV + I++D
Sbjct: 533 LDQIVPLQKNNDGAVITQYYMEDVEAMGLLKMDFLGLKNLTTLQRAVELVAETKGIELDL 592
Query: 539 LKINLEDEDTL-------------------ALFRAGNTMGIFQFENPQMRRFLRNLAPSK 579
+ L++ L L AG+ GIFQ E+ M++ +R+L PS
Sbjct: 593 DDLPLQERKALQIRARTGSKKLPDDVKKTHKLLEAGDLEGIFQLESQGMKQIVRDLKPSG 652
Query: 580 FDDIVDATSIFRPGP--SQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQ 637
+DI +++RPGP + IP F+ R+HG+E + + IL TYG+++YQEQIM+
Sbjct: 653 IEDISSILALYRPGPLDAGLIPIFINRKHGREEISYQHKLLEPILNETYGVLVYQEQIMK 712
Query: 638 VAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFA 697
+AQ A +SLG+ADLLRRA+ KKK E++K R F+D ++ +G AE ++D + +FA
Sbjct: 713 MAQDLADYSLGEADLLRRAMGKKKAEEMQKHRAKFVDGSTKHGVPSRIAENLFDQMVKFA 772
Query: 698 NY 699
Y
Sbjct: 773 EY 774
sp|Q49405|DP3A_MYCGE DNA POLYMERASE III, ALPHA CHAIN >gi|1361491|pir||H64228 DNA
polymerase III alpha chain (dnaE) homolog - Mycoplasma
genitalium (SGC3) >gi|1045954 (U39705) DNA polymerase
III, subunit alpha (polC-2) [Mycoplasma genitalium]
Length = 874
Score = 331 bits (840), Expect = 2e-89
Identities = 268/890 (30%), Positives = 430/890 (48%), Gaps = 89/890 (10%)
Query: 1 MFAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQP 60
MF L+T + Y+FL+S + + A + V I D NL A F ++ N++P
Sbjct: 1 MFVNLHTNSYYNFLNSALSPKKLVNLAINDQQKAVAITDP-NLFGAVEFFITCKQNNIKP 59
Query: 61 IISIELNFEWRGLPIAFSFIAKDTEGYKNLLRISTLHNYGRRQFSDIQNHLSGIALIIPE 120
II + L E++ + IAK +G++ L +I+ + + + + + + L+ IA+II
Sbjct: 60 IIGLNLTVEYQKNDVKLLLIAKSNKGFQTLNKIALIQQ--KLEINSLVDQLTDIAVII-- 115
Query: 121 TYGSLSELTELSSVADEAFIGIDQLTDKGAKFNLPTLPFPAIRY---LNFADNEILAILH 177
LT S + + KG + N + A +D +L +L
Sbjct: 116 -----CSLTTWKSTYKDVYQA------KGIEINQTPIAILANAVNCEKTNSDQVVLTVLK 164
Query: 178 AVRDG-----VSFDESLT-----ISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAY 227
++ +FD L IS NE L+ + + L K A
Sbjct: 165 QMKQNQTGKITTFDWDLKQKLNQISINENLKVKSEIQPF--------------LDQKTAQ 210
Query: 228 QFDEKLELPRFD----KKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNL-------QD 276
Q + EL + + +EHL+ + LS + +L + NL QD
Sbjct: 211 QLFSETELNNLNDLVNRCELDLEHLKAAS---LSLTDNDAAVLESLCQTNLKQFLDKNQD 267
Query: 277 LS--VYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLG 334
L+ YQ RLEKEL+VI+++ F YFL+V DL+ YA ++DI G GRGSA GSLVA++L
Sbjct: 268 LNKKAYQLRLEKELNVINKLNFASYFLVVNDLVNYAFKKDILIGSGRGSAVGSLVAFLLN 327
Query: 335 ITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFST 394
IT++DPVQH L FERF++ R E++ Y+ +YG ++ AQIVTF
Sbjct: 328 ITKIDPVQHQLIFERFISTHRQDLPDIDIDIMENKRAEMINYLFEKYGKENCAQIVTFQR 387
Query: 395 LGKRQALRDVGKAF---GMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKR 451
R A+++V K F G+++ L L + F L ++ + + +
Sbjct: 388 FKTRSAVKEVAKLFNDYGISDMILGVLPKDQTITFTDLKATEDSALQLCLQ-----QFGL 442
Query: 452 IYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSL-KPSEDLALTQYEAPDVEAIGLLKI 510
I E+A I PRQ+S HASG+V++ SL+ + L + + LTQ + L K
Sbjct: 443 IVELALAIVDFPRQSSIHASGIVIASNSLIKTIPLLQLDNNHFLTQVSMEWLSFFNLNKF 502
Query: 511 DFLGLRNLTIISRLRDLVK-RRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMR 569
D LGL NLT+IS + +K Q ++ I+ D++T +T+GIFQ E+ M+
Sbjct: 503 DLLGLINLTMISDVITQIKPSNQTVNQFLNTISWTDQNTFINLVNEDTLGIFQLESFGMK 562
Query: 570 RFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIM 629
+ L + P + + +++RPG I F+ R H +D I I+K TYG++
Sbjct: 563 KLLVQIKPKTINQLAIVLALYRPGAQDNINLFINRLHNGYDQSDIDPRILPIVKNTYGVL 622
Query: 630 IYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEI 689
I+QEQI+ + + A +SL +AD RRAISKK ++K + +F + A N + +I
Sbjct: 623 IFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNNFDLKTTTKI 682
Query: 690 YDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFY-----EIQLRDRKREVMILDA 744
+ IERFANYGFN SH Y L++ A+ K ++P FY Q K++++I
Sbjct: 683 FSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLLNHFQSSKDKQKLIIRTL 742
Query: 745 LENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGIS----RDLAK--WIVENQPYKDLA 798
++G EI P +N + ++NKKI LGL ++GI+ ++L K +++ Q L
Sbjct: 743 EKSGIEIYPPLLNKAQPNSVIENKKIYLGLNLIKGINDRYIQNLQKVQHLIQTQNNLQLT 802
Query: 799 DFV----EKLPNNFHKKENILPLIQIGAFDY----ADSNRGKLAYNLADH 840
D V +K + K+ +L L +G FD+ D N K + +DH
Sbjct: 803 DVVSWCLDKTIGDIPLKD-LLLLKTMGCFDFFEYTYDFNDAKDFWIKSDH 851
sp|P75404|DP3A_MYCPN DNA POLYMERASE III, ALPHA CHAIN >gi|2146105|pir||S73785 DNA
polymerase III alpha chain - Mycoplasma pneumoniae
(SGC3) (ATCC 29342) >gi|1674148 (AE000045) Mycoplasma
pneumoniae, DNA polymerase III alpha subunit; similar to
GenBank Accession Number H64089, from H. influenzae
[Mycoplasma pneumoniae]
Length = 872
Score = 320 bits (811), Expect = 4e-86
Identities = 246/808 (30%), Positives = 391/808 (47%), Gaps = 58/808 (7%)
Query: 1 MFAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVG-NLHAAFRFVRKAQKFNLQ 59
MF L+T + Y+FL+S + ++ A + Q V +C NL A F QK +++
Sbjct: 1 MFVNLHTNSYYNFLNSTLSPQKLVDLA--VQDQQVAVCLTDPNLFGATEFFLACQKAHIK 58
Query: 60 PIISIELNFEWRGLPIAFSFIAKDTEGYKNLLRISTLHNYGRRQFSDIQNHLSGIALIIP 119
P+I + + + IA+ GY+NL+ ++ + + Q ++ L G +II
Sbjct: 59 PLIGLSVTVRHYEQNVNLLVIAQTNRGYQNLMCLALVKDQPDLQ---LEPFLDGNVVII- 114
Query: 120 ETYGSLSELTELS-SVADEAFIGIDQLTDKGAKFNLPTLPFPAIRYLNFADNEILAILHA 178
TEL + A+ ++ L+ + K + P ++ N N+ L +L
Sbjct: 115 ------CTQTELRLNTANPVYLA-HGLSGRYPKIAVTQKP---VKCQN--TNKDLTLLLT 162
Query: 179 VRDGVSFDES--------LTISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFD 230
++ + L+ S NE+ P Q L++ L+ K A Q
Sbjct: 163 LKQISQINSEHFQPLEWKLSRSLNEIQLDPPLL---------QQLRHQPFLSQKAAQQIF 213
Query: 231 EKLELPRFDKK-RQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDL---------SVY 280
+ EL K Q+ L + L + +L+E + L + +Y
Sbjct: 214 SEEELGNLQKLVEQSQWDLTKLKASSLQVSHNDAQMLSEQCQLALTEFLKLNPQLNKQLY 273
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ERL KEL +I+ + F YFL+V+DL+++A DI G GRGSA GSLVA++L ITQ+DP
Sbjct: 274 EERLAKELEIINSLHFASYFLVVSDLVQFAHNNDILIGPGRGSAVGSLVAFLLKITQIDP 333
Query: 341 VQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQA 400
V +NL FERF++ R ++ Y+ +YG + AQIVTF R A
Sbjct: 334 VANNLIFERFISRHRQGLPDIDIDIMETKRDLVIDYVMQKYGREQCAQIVTFQKFKTRSA 393
Query: 401 LRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIE 460
LRDVGK F E L ++ + +L + N L + ++EVAR I
Sbjct: 394 LRDVGKVFNHIEGAEDLLGKLPKDK--SLLELDVNGVTDPVLQLSLKSFRLLWEVAREII 451
Query: 461 GMPRQTSTHASGVVLSEESLVNYVSLKP-SEDLALTQYEAPDVEAIGLLKIDFLGLRNLT 519
PRQ S HASGVV+ E L+ + L + + +TQ +E L K D LGL NLT
Sbjct: 452 NFPRQPSIHASGVVIVTEPLITTIPLMVGNNNNYVTQVSMDWLEWYNLNKFDLLGLINLT 511
Query: 520 IISRLRDLVKRRQKIDIDPL--KINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAP 577
+I + VK ++ + + +I L+DE T T+G+FQ E+ M++ L+ + P
Sbjct: 512 MIHEVVQAVKPKE-VSVQQFLQQIPLDDEATFTNLTNQATLGVFQLESFGMKKVLKQIKP 570
Query: 578 SKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQ 637
D+ +++RPGP I F+A R+ +D I ILK TYG++I+QEQ++
Sbjct: 571 HNLHDLAIVLALYRPGPQDNINTFIANRNLGFDTSDIDPRILPILKETYGVLIFQEQVIN 630
Query: 638 VAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFA 697
+A+ A +SL AD RRAISKK ++ F + A N S + A I++ I+RFA
Sbjct: 631 IAKTVANYSLETADSFRRAISKKNLQVIQDNMRSFYEGALANNFSLKAATTIFNYIQRFA 690
Query: 698 NYGFNRSHGFAYGALAFQIAYFKAHFPDEF-----YEIQLRDRKREVMILDALENGFEIE 752
YGFN SH Y L++ A+ K H+ ++F Q + K++ ++ + + +G+EI
Sbjct: 691 GYGFNLSHALGYALLSYWTAWLKTHYFEQFNLWWLNHEQGKKEKQKQLLNEFISSGYEIC 750
Query: 753 KPSINLMKIGDFVKNKKIRLGLAHVQGI 780
P IN K V++KK+ LG + GI
Sbjct: 751 PPLINKAKSDFSVQDKKLYLGFKLINGI 778
emb|CAB50954.1| (AL096849) putative DNA polymerase III, alpha chain [Streptomyces
coelicolor A3(2)]
Length = 1185
Score = 280 bits (710), Expect = 3e-74
Identities = 227/860 (26%), Positives = 385/860 (44%), Gaps = 55/860 (6%)
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA 220
A+RY + E+ +L A R V + + S E + + +++ + + +
Sbjct: 223 AVRYADPGQGEVADVLDAARRLVPIGATKELDSGEAWLK----DAGAMRHAAERIVESAG 278
Query: 221 LTAKIAYQFDEKLEL--------PRFDKKRQAVEHLREEATLGLSARLEEKNLLTEVSSV 272
A++ E+ P D AV H E +G R ++ L + ++
Sbjct: 279 FRRDTAHRLLEQTRATAAECLVDPEDDLGMGAV-HFPEPHLVGAGRRTAQRALASRAAAG 337
Query: 273 NLQ-------DLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAA 325
++ D Y ER+ EL +I GF YFL VA ++ R I RGS A
Sbjct: 338 MVRRGYDRRRDHREYWERMHHELDIIAHHGFASYFLTVAQVVDDVRHMGIRVA-ARGSGA 396
Query: 326 GSLVAYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDH 385
GSLV ++LGI DPV+H L ERFL+ ERV E+ + R+G++
Sbjct: 397 GSLVNHLLGIAHADPVEHGLLMERFLSKERVVLPDIDIDVESARRLEVYRAIIGRFGTER 456
Query: 386 VAQIVTFSTLGKRQALRDVGKAFGMTEAELSNLTRML----VRRFGTLADEYENNQRFKA 441
VA + T R A+RDVG A M AE+ + + R +E +
Sbjct: 457 VATVAMPETYRVRHAIRDVGAALSMDPAEIDRVAKSFPHIRARDARAALEELPELKELAG 516
Query: 442 EVLKNG--KLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPS--EDLALTQY 497
E ++G + R++E+ ++ +PR + H GV+LS+ SL++ + P+ E L + Q+
Sbjct: 517 ESRRDGGGRYGRLWELVEGLDALPRGVAMHPCGVLLSDASLLSRTPVVPTSGEGLPMAQF 576
Query: 498 EAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNT 557
+ DVE +GLLK+D LG+R + ++ VKR ++D + D T + R+ T
Sbjct: 577 DKDDVEDLGLLKLDVLGVRMQSAMAHAVAEVKRATGTEVDLDAVPEGDPATYRMIRSAET 636
Query: 558 MGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGP--SQFIPQFVARRHGKEIVPTVD 615
+G FQ E+P R + L P+ F D+V S+FRPGP + + F+ RHG+ V
Sbjct: 637 LGCFQIESPGQRDLVGRLQPATFHDLVVDISLFRPGPVAADMVRPFIEARHGRAPVRHPH 696
Query: 616 DSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDS 675
+ ++E L TYG++++ EQI+ + G G+AD +RR +S + +++ F
Sbjct: 697 EDLAEPLAGTYGVVVFHEQIIDIVAIMTGCGRGEADRVRRGLSDPESQ--GRIKVWFAQH 754
Query: 676 ASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRD- 734
A+ NG+ E + ++++E F +YGF ++H A+ +Q A+ KAH P FY L
Sbjct: 755 ATANGYDAETIQRTWEIVEAFGSYGFCKAHAVAFAVPTYQSAWLKAHHPAAFYAGLLTHD 814
Query: 735 ---RKREVMILDALENGFEIEKPSINLMKIGDFVK------NKK-----IRLGLAHVQGI 780
+ +++ DA G I +N + ++ ++K +RL L+ V GI
Sbjct: 815 PGMYPKRLLLADARRRGVPILPLDVNESGVAHRIELVSESGSRKPATWGLRLALSDVHGI 874
Query: 781 SRDLAKWIVENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADH 840
S A+ I QPY L DF E+ + + L Q+GA D +NR L +L +
Sbjct: 875 SEAEAERIATGQPYASLLDFWERARPS---RPLAGRLAQVGALDAFGANRRDLQLHLTEL 931
Query: 841 ANLLNYYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGN 900
D + G A D + EK E +L + + + + +
Sbjct: 932 HRGARGGRGDQLPLTGGRKTASAGLPDLTSEEKLSAELGVLSMDASRNLMDDHRTFLREL 991
Query: 901 FTPLAQLVKNRR--MTILV--EINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQ 956
A+ ++ R T+LV +T ++G+ + F T+ D D+ F + +
Sbjct: 992 GVVSAKRLREARHGETVLVAGAKAATQTPPVRSGRRVIFSTLDDGSGLVDLAFFDDSHDA 1051
Query: 957 FSGELEQGKFYLISGKVTER 976
+ + L+ G V R
Sbjct: 1052 CAHTVFHSWLLLVRGVVQRR 1071
gi|3883104 (AF074611) putative DNA polymerase III , alpha subunit [Yersinia
pestis]
Length = 1174
Score = 276 bits (698), Expect = 8e-73
Identities = 232/888 (26%), Positives = 394/888 (44%), Gaps = 149/888 (16%)
Query: 5 LNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPIISI 64
L +T++S +S +K ++ ++ A GY V D N+ + R A ++ I +
Sbjct: 4 LMVRTDFSLGESALKAENAVKIARDAGYTAVISADSMNIASVIPLQRAAGD-DMAVICGV 62
Query: 65 ELN------FEWRGL----------------PIAFSFIAKDTEGYKNLLRISTLHNYGRR 102
+LN +E R F+ + K+ +GY+++ + TL N R
Sbjct: 63 KLNVVDDPTYEHRARLAKESERCMESLVRDRSYCFTALIKNEQGYRDVCELMTLANK-RE 121
Query: 103 QFSDIQN---------HLSGIALIIPETYGSLSELTELSSVAD--------EAFIGI--- 142
QF + + G +++ GS+ + + + + + F +
Sbjct: 122 QFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQRRDFAKIIGTLVTAGGRDNFYSVVYP 181
Query: 143 ------DQLTDKGAK----FNLPTLPFPAIRYLNFADNEILAILHAVRDGVSFDESLTIS 192
DQ+ + K + + F Y D +I I H V + + D+ +
Sbjct: 182 HPTPFYDQINVRAMKVASALKIEPVAFYPAYYEAVDDADIKDIAHMVTNNIKIDQPHRLR 241
Query: 193 SNELLQRPEAYETYFLKYFPQALKNLSA-----LTAKIAYQFDEKL---------ELPRF 238
QR A ++ +ALK S +TA +A + + ELP
Sbjct: 242 IPH--QRDNAVNGR--RHLLEALKAFSVRMDVPVTAAMASTTQDTIIEACTWRWHELPPA 297
Query: 239 DKKRQAVEH--LREEATLGLSARLEEKNL-LTEVSSVNLQDLSVYQERLEKELSVIHQMG 295
K E L + A GL RL K T +S + VY +RL+ E+ + ++G
Sbjct: 298 LPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPPASEH----RVYVDRLKYEMDTLTRLG 353
Query: 296 FDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPER 355
F YFL+V DL+ ++RE I G GRGS+AGSLVA+ +GIT VDP++H L FERF+NPER
Sbjct: 354 FCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLVAWCIGITNVDPIRHGLLFERFINPER 413
Query: 356 VXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAEL 415
+ E++ Y+ RYG D+VA I F+ LG ALRD + +G+ A++
Sbjct: 414 LDLPDADLDFSQARRHEVIEYLNERYGEDYVAGIPNFTYLGAASALRDTARIYGVDAADM 473
Query: 416 SNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIY----EVARRIEGMPRQTSTHAS 471
+ + + F L D+ + + + ++ K Y + A +++ + R HA+
Sbjct: 474 A-----VSKEFKNLEDDSLSLEELREQLASLDKYATKYPEAFKAACKLQSLMRGFGRHAA 528
Query: 472 GVVLSEESLVNYVSLKPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRR 531
G++++ LV ++ + ++ EA+GL+K+D LGL L ++ + +K
Sbjct: 529 GMIVAGVPLVERTPVELRGNARCIAFDKRYCEAMGLIKLDVLGLATLDLLDSAKRYIKES 588
Query: 532 QKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLA----PSKFDDIVDAT 587
DI+ I L+D L F AG T G+FQ E+ MR+ L++L P F +V T
Sbjct: 589 TGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLESGPMRKLLKDLGGGIEPMSFKTVVATT 648
Query: 588 SIFRPGPSQ--FIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGF 645
++FRPGP Q + +V+ G ++ + E+ T G+++YQEQ M + AGF
Sbjct: 649 ALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLDELTAETNGVILYQEQTMNATRLLAGF 708
Query: 646 SLGKADLLRRAISKKKGSELEKLREDFLDSA----------------------------- 676
++ +AD +R+AI KK +++ + E F+ A
Sbjct: 709 TMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAGWIDVEMEDGTTQRIHRAEHFKCEDGA 768
Query: 677 -----------------------SHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALA 713
S G S+ KA+EI+D E+ Y FN+SH AY ++
Sbjct: 769 LRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAKEIWDAFEKNGAYQFNKSHPVAYSLIS 828
Query: 714 FQIAYFKAHFPDEFYEIQLR---DRKREVMILDALENGFEIEKPSINL 758
+Q + K H+P EF+ L + K + ++ DAL G + P +N+
Sbjct: 829 YQSMWLKTHYPAEFFAAALTILGEDKHQGLVKDALTYGIHVLPPDVNV 876
emb|CAA15755| (AL009198) dnaE2 [Mycobacterium tuberculosis]
Length = 1079
Score = 273 bits (690), Expect = 7e-72
Identities = 199/728 (27%), Positives = 341/728 (46%), Gaps = 49/728 (6%)
Query: 283 RLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQ 342
++E EL VI Q+ F YFL+V D+ R+ R+ DI C GRGSAA S V Y LG+T VDPV
Sbjct: 363 QIEHELKVIAQLRFPGYFLVVHDITRFCRDNDILC-QGRGSAANSAVCYALGVTAVDPVA 421
Query: 343 HNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALR 402
+ L FERFL+P R +++ Y+ ++YG D+ AQ+ T R A+R
Sbjct: 422 NELLFERFLSPARDGPPDIDIDIESDQREKVIQYVYHKYGRDYAAQVANVITYRGRSAVR 481
Query: 403 DVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGM 462
D+ +A G + + ++ + G D +G +++ ++A +I +
Sbjct: 482 DMARALGFSPGQQDAWSKQVSHWTGQADDV-------------DGIPEQVIDLATQIRNL 528
Query: 463 PRQTSTHASGVVLSEESLVNYVSLKPSE--DLALTQYEAPDVEAIGLLKIDFLGLRNLTI 520
PR H+ G+V+ + + + ++ + + ++ Q++ D AIGL+K D LGL L+
Sbjct: 529 PRHLGIHSGGMVICDRPIADVCPVEWARMANRSVLQWDKDDCAAIGLVKFDLLGLGMLSA 588
Query: 521 ISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSKF 580
+ +DLV + I++D +++L + + +++G+FQ E+ L L P F
Sbjct: 589 LHYAKDLVAEHKGIEVDLARLDLSEPAVYEMLARADSVGVFQVESRAQMATLPRLKPRVF 648
Query: 581 DDIVDATSIFRPGPSQ--FIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQV 638
D+V ++ RPGP Q + ++ RR+G + V S++ L+ T G+ ++QEQ+MQ+
Sbjct: 649 YDLVVEVALIRPGPIQGGSVHPYIRRRNGVDPVIYEHPSMAPALRKTLGVPLFQEQLMQL 708
Query: 639 AQAFAGFSLGKADLLRRAISKKKGSE-LEKLREDFLDS-ASHNGHSKEKAEEIYDLIERF 696
A AGFS +AD LRRA+ K+ +E + +LR F D + +G E + IY+ +E F
Sbjct: 709 AVDCAGFSAAEADQLRRAMGSKRSTERMRRLRGRFYDGMRALHGAPDEVIDRIYEKLEAF 768
Query: 697 ANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDR-----KREVMILDALENGFEI 751
AN+GF SH ++ +L F A+FK H P F LR + + ++ DA +G +
Sbjct: 769 ANFGFPESHALSFASLVFYSAWFKLHHPAAFCAALLRAQPMGFYSPQSLVADARRHGVAV 828
Query: 752 EKPSINLMKIGDFVKN--KKIRLGLAHVQGISRDLAKWIV----ENQPYKDLADFVEKLP 805
P +N +N ++RLGL V+ + +LA+ +V N P+ L D ++
Sbjct: 829 HGPCVNASLAHATCENAGTEVRLGLGAVRYLGAELAEKLVAERTANGPFTSLPDLTSRVQ 888
Query: 806 NNFHKKENILPLIQIGAFDYADSN----RGKLAYNLADHANLLNYYSDDIFMASSGGGFA 861
+ + E + +G F + G A D + G
Sbjct: 889 LSVPQVEALATAGALGCFGMSRREALWAAGAAATGRPDR------------LPGVGSSSH 936
Query: 862 YHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFTPLAQLVKNRRMTILVEINY 921
SE E + G+ +P Q L + A+ + + V I
Sbjct: 937 IPALPGMSELELAAADVWATGVSPDSYPTQFLRADLDAMGVLPAERLGSVSDGDRVLIAG 996
Query: 922 IRTHRTK--TGQTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVTERNDE 979
THR + T Q + F+ + D +V P ++ + LI G+V +
Sbjct: 997 AVTHRQRPATAQGVTFINLEDETGMVNVLCTPGVWARHRKLAHTAPALLIRGQVQNASGA 1056
Query: 980 LQLVTDRI 987
+ +V +R+
Sbjct: 1057 ITVVAERM 1064
gi|2996335 (AF053947) DNA polymerase III alpha subunit homolog [Yersinia
pestis]
Length = 1135
Score = 270 bits (682), Expect = 6e-71
Identities = 214/794 (26%), Positives = 360/794 (44%), Gaps = 126/794 (15%)
Query: 77 FSFIAKDTEGYKNLLRISTLHNYGRRQFSDIQN---------HLSGIALIIPETYGSLSE 127
F+ + K+ +GY+++ + TL N R QF + + G +++ GS+ +
Sbjct: 58 FTALIKNEQGYRDVCELMTLANK-REQFYFVPRLALDQLAAAYAKGNIILLTSDIGSVFQ 116
Query: 128 LTELSSVAD--------EAFIGI---------DQLTDKGAK----FNLPTLPFPAIRYLN 166
+ + + + F + DQ+ + K + + F Y
Sbjct: 117 RRDFAKIIGTLVTAGGRDNFYSVVYPHPTPFYDQINVRAMKVASALKIEPVAFYPAYYEA 176
Query: 167 FADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA-----L 221
D +I I H V + + D+ + QR A ++ +ALK S +
Sbjct: 177 VDDADIKDIAHMVTNNIKIDQPHRLRIPH--QRDNAVNGR--RHLLEALKAFSVRMDVPV 232
Query: 222 TAKIAYQFDEKL---------ELPRFDKKRQAVEH--LREEATLGLSARLEEKNL-LTEV 269
TA +A + + ELP K E L + A GL RL K T
Sbjct: 233 TAAMASTTQDTIIEACTWRWHELPPALPKMADDEPATLMKLAVAGLRKRLTTKEFGYTPP 292
Query: 270 SSVNLQDLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLV 329
+S + VY +RL+ E+ + ++GF YFL+V DL+ ++RE I G GRGS+AGSLV
Sbjct: 293 ASEH----RVYVDRLKYEMDTLTRLGFCGYFLMVRDLMNHSRETGIPVGPGRGSSAGSLV 348
Query: 330 AYVLGITQVDPVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQI 389
A+ +GIT VDP++H L FERF+NPER+ E++ Y+ RYG D+VA I
Sbjct: 349 AWCIGITNVDPIRHGLLFERFINPERLDLPDADLDFSQARRHEVIEYLNERYGEDYVAGI 408
Query: 390 VTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKL 449
F+ LG ALRD + +G+ A+++ + + F L D+ + + + ++ K
Sbjct: 409 PNFTYLGAASALRDTARIYGVDAADMA-----VSKEFKNLEDDSLSLEELREQLASLDKY 463
Query: 450 KRIY----EVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLALTQYEAPDVEAI 505
Y + A +++ + R HA+G++++ LV ++ + ++ EA+
Sbjct: 464 ATKYPEAFKAACKLQSLMRGFGRHAAGMIVAGVPLVERTPVELRGNARCIAFDKRYCEAM 523
Query: 506 GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFEN 565
GL+K+D LGL L ++ + +K DI+ I L+D L F AG T G+FQ E+
Sbjct: 524 GLIKLDVLGLATLDLLDSAKRYIKESTGEDINLDAIPLDDRKVLDGFAAGYTQGVFQLES 583
Query: 566 PQMRRFLRNLA----PSKFDDIVDATSIFRPGPSQ--FIPQFVARRHGKEIVPTVDDSIS 619
MR+ L++L P F +V T++FRPGP Q + +V+ G ++ +
Sbjct: 584 GPMRKLLKDLGGGIEPMSFKTVVATTALFRPGPIQSGMLDDYVSVAKGFMAPQSLHPVLD 643
Query: 620 EILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSA--- 676
E+ T G+++YQEQ M + AGF++ +AD +R+AI KK +++ + E F+ A
Sbjct: 644 ELTAETNGVILYQEQTMNATRLLAGFTMAEADGVRKAIGKKDMEKMKSMGEKFVVQAQAG 703
Query: 677 -------------------------------------------------SHNGHSKEKAE 687
S G S+ KA+
Sbjct: 704 WIDVEMEDGTTQRIHRAEHFKCEDGALRTVEEALEAGVKLPMAAVRVTGSQPGLSETKAK 763
Query: 688 EIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLR---DRKREVMILDA 744
EI+D E+ Y FN+SH AY +++Q + K H+P EF+ L + K + ++ DA
Sbjct: 764 EIWDAFEKNGAYQFNKSHPVAYSLISYQSMWLKTHYPAEFFAAALTILGEDKHQGLVKDA 823
Query: 745 LENGFEIEKPSINL 758
L G + P +N+
Sbjct: 824 LTYGIHVLPPDVNV 837
gb|AAD35546.1|AE001724_4 (AE001724) DNA polymerase III, alpha subunit, putative [Thermotoga
maritima]
Length = 842
Score = 250 bits (633), Expect = 3e-65
Identities = 180/567 (31%), Positives = 274/567 (47%), Gaps = 83/567 (14%)
Query: 280 YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVD 339
Y RL++EL VI + GF Y V ++ A++ I G GRGSA GSLVAY+ GIT+VD
Sbjct: 177 YISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGITEVD 236
Query: 340 PVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQ 399
P++++L FERFLN ER +L+ + + V Q+ TF L
Sbjct: 237 PIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNL---- 289
Query: 400 ALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRI 459
TE L NL VL + L+ E+ + +
Sbjct: 290 -----------TEKSLKNLIN---------------------SVLPDASLEEKNEIYKTV 317
Query: 460 EGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLT 519
G+P S HA+GVV+SE L + + ED+ +T Y+ D++ IG++KID LGL+ L+
Sbjct: 318 YGLPHHPSVHAAGVVISENPLP--LPTRTEEDIPITDYDMYDLQEIGVVKIDILGLKTLS 375
Query: 520 IISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSK 579
I + + + DE T L G T+G+FQ E Q R+ R ++P
Sbjct: 376 FIKDFKKEI------------FDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRN 423
Query: 580 FDDIVDATSIFRPGPSQFIPQFVARRHGKEIV----PTVDDSISEILKPTYGIMIYQEQI 635
D++ ++ RPGP R G +++ V ++ T G++IYQEQI
Sbjct: 424 MDELSILLALNRPGP---------LRSGLDVMFSNSKNVPAFFRKMFPETRGVLIYQEQI 474
Query: 636 MQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIER 695
M++A FAG S +AD+LRRAI+KK+ ++E L E G E AE+I +++
Sbjct: 475 MRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKG--MENAEQILEILLN 531
Query: 696 FANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQL----RDRKREVMILDALEN-GFE 750
F++Y FN+SH AY + +Q AY KAH +EF+++ D + + + L N G+
Sbjct: 532 FSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRNEGYR 591
Query: 751 IEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQP---YKDLADFVEKLPNN 807
+ P IN+ K + L L V+G+ L + I + +P ++L + V +P N
Sbjct: 592 VHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKIRPVSSVRELQERVTGVPRN 651
Query: 808 FHKKENILPLIQIGAFDYADSNRGKLA 834
+ LI GAFD NR KLA
Sbjct: 652 V-----VESLITAGAFDKLYENR-KLA 672
gi|3930523 (AF063188) DNA polymerase III [Thermotoga maritima]
Length = 842
Score = 249 bits (630), Expect = 7e-65
Identities = 179/567 (31%), Positives = 274/567 (47%), Gaps = 83/567 (14%)
Query: 280 YQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVD 339
Y RL++EL VI + GF Y V ++ A++ I G GRGSA GSLVAY+ GIT+VD
Sbjct: 177 YISRLKRELEVIKRKGFTPYIYTVEKVVEIAKKMGIKVGPGRGSAVGSLVAYLCGITEVD 236
Query: 340 PVQHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQ 399
P++++L FERFLN ER +L+ + + V Q+ TF L
Sbjct: 237 PIKYDLLFERFLNEERQEPPDIDVDVEDRRRKDLIKELSKSF---QVYQVSTFGNL---- 289
Query: 400 ALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRI 459
TE L NL VL + L+ E+ + +
Sbjct: 290 -----------TEKSLKNLIN---------------------SVLPDASLEEKNEIYKTV 317
Query: 460 EGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLT 519
G+P S HA+GVV+SE L + + ED+ +T Y+ D++ IG++KID LGL+ L+
Sbjct: 318 YGLPHHPSVHAAGVVISENPLP--LPTRTEEDIPITDYDMYDLQEIGVVKIDILGLKTLS 375
Query: 520 IISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFENPQMRRFLRNLAPSK 579
+ + + + DE T L G T+G+FQ E Q R+ R ++P
Sbjct: 376 FMKDFKKEI------------FDYSDEKTYHLISKGKTLGVFQLEGLQARKLCRRISPRN 423
Query: 580 FDDIVDATSIFRPGPSQFIPQFVARRHGKEIV----PTVDDSISEILKPTYGIMIYQEQI 635
D++ ++ RPGP R G +++ V ++ T G++IYQEQI
Sbjct: 424 MDELSILLALNRPGP---------LRSGLDVMFSNSKNVPAFFRKMFPETRGVLIYQEQI 474
Query: 636 MQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIER 695
M++A FAG S +AD+LRRAI+KK+ ++E L E G E AE+I +++
Sbjct: 475 MRLAM-FAGLSGTEADILRRAIAKKEREKMEPLLEKMKKGLLEKG--MENAEQILEILLN 531
Query: 696 FANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQL----RDRKREVMILDALEN-GFE 750
F++Y FN+SH AY + +Q AY KAH +EF+++ D + + + L N G+
Sbjct: 532 FSSYAFNKSHSVAYAHITYQTAYLKAHHLEEFFKLYFAYNSSDAGKIFLAVQELRNEGYR 591
Query: 751 IEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQP---YKDLADFVEKLPNN 807
+ P IN+ K + L L V+G+ L + I + +P ++L + V +P N
Sbjct: 592 VHPPDINISGKDLVFHGKDVYLPLTVVKGVGVTLVEQIEKIRPVSSVRELQERVTGVPRN 651
Query: 808 FHKKENILPLIQIGAFDYADSNRGKLA 834
+ LI GAFD NR KLA
Sbjct: 652 V-----VESLITAGAFDKLYENR-KLA 672
emb|CAB13926| (Z99114) similar to DNA polymerase III (alpha subunit) [Bacillus
subtilis] >gi|3025611 (AF020713) putative DNA polymerase
[Bacteriophage SPBc2]
Length = 1305
Score = 161 bits (404), Expect = 2e-38
Identities = 196/837 (23%), Positives = 338/837 (39%), Gaps = 107/837 (12%)
Query: 89 NLLRISTLHNYGRRQFSDIQNHLSGIALIIP---ETYGSLSELTELS-SVADEAFIGIDQ 144
+LL+I G Q I+ H I I E +G EL ++++E +
Sbjct: 164 HLLKIKAFEETGDSQ--SIKQHKLKIHEFITWCIEVFGKDKFFIELQPALSEEQIYCNKK 221
Query: 145 LTDKGAKFNLPTLPFPAIRYLNFADNEILAILHAVRDGV----SFDESLTISS-NELLQR 199
L D ++L + YL D I +DG SF E+ + + +E+ +R
Sbjct: 222 LIDIANGYDLQMIVTTDAHYLRPEDRAIHQAFLNAKDGEREVDSFYEACFVQNVDEIHER 281
Query: 200 PEAYETYFLKYFPQALKNLSALTAKIA-YQFDE-----KLELPRFDKKR---------QA 244
+ + + QA+KN + I Y + K+ELP F + +
Sbjct: 282 MDYIDK---EVIDQAIKNTMLIGEMIEDYTIEHEPIIPKMELPNFKLRHLFKPAYDQYEY 338
Query: 245 VEHLREEATL-----------GLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQ 293
++ + E A G +L+ L E L ++V L E+S
Sbjct: 339 IKKMSESADEQDRYLLKLIEDGFEEKLKTSELTREAFHKILNRINVELGELW-EISQKLN 397
Query: 294 MGFDDYFLIVADLLRYAREQ----DIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFER 349
Y++ V +++ + D G RGSAAG LV Y+L TQ++P+Q++L R
Sbjct: 398 QSMSSYYITVREIINIIWDDECGGDSLVGAARGSAAGYLVNYLLDNTQINPMQYDLPHWR 457
Query: 350 FLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFG 409
++ R ++L ++ R+G V QI TF T G + AL+ + G
Sbjct: 458 HIHKSRPDLPDIDIDTEGSKRQKILKALRERFGDKRVLQIATFGTEGSKSALQTACRGLG 517
Query: 410 MTEAELSNLTRMLVRRFGT--------LADEYENNQRFKAEVLKNGKLKRIYEVARRIEG 461
+ L+ M+ G+ D+ + K + + + + E A +IEG
Sbjct: 518 IDNDISQYLSGMIPFERGSNWPLKHCFYGDKETGRKPIKEFIREVEQYPNLKETALKIEG 577
Query: 462 MPRQTSTHASGVVL-SEESLVNYVSLKPSEDLALTQYEAPDVEAIGLLKIDFLGLRNLTI 520
+ + S+HA+GV++ ++E + +K + +TQ+ D EA+G +K D L + L
Sbjct: 578 LTNKRSSHAAGVIIFNDEYTKSNAMMKTPKGAYITQFNMGDSEAMGSVKFDLLTIEALDK 637
Query: 521 ISRLRDLVKRRQKID------------IDPLKINLEDEDTLALFRAGNTMGIFQFENPQM 568
I D + +I+ I P I ED+ + G M +FQF
Sbjct: 638 IRVTLDQLIENNEIEWQGSLKETYNKYIHPDVIEYEDDKLWEMAGNGEIMDLFQFSTEVG 697
Query: 569 RRFLRNLAPSKFDDIVDATSIFR---PGPSQFIPQFVARRHG----KEIVPTVDDSISEI 621
+ + + P + S+ R G Q + +V ++ E + S EI
Sbjct: 698 HQSVVKVKPKNLLEAAVTNSLMRLMSDGEEQPVDTYVKYKNNLNKWYEEMTRYGLSEKEI 757
Query: 622 ------LKPTYGIMIYQEQIMQVA--QAFAGFSLGKADLLRRAISKKKGSELEKLREDFL 673
LK YG+ QE +MQ+ + A F + +++ LR++I+KKK L+++ E F
Sbjct: 758 RVMERHLKDIYGVADTQEVVMQMVMDKDIANFDIKESNYLRKSIAKKKEDVLKEVEELFF 817
Query: 674 DSASHNGHSKEKAEEIYDL-IERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEI-- 730
G S ++++ +R Y F+ H AY +A Q + ++
Sbjct: 818 KKGKEIGTSDNLLNYVWNVQFKRQFGYSFSLLHTLAYSIIALQELNLNYRYNPLYWNTAC 877
Query: 731 -----------QLRDRKREV-----MILDALEN----GFEIEKPSINLMKIG--DFVKNK 768
+D K+ + A+ N G +I+ P IN G + N
Sbjct: 878 LTVNSGGIDTEDTKDNKKTAATNYGKVASAIGNIRQRGIKIDLPDINKADFGFRTDINNN 937
Query: 769 KIRLGLAHVQGISRDLAKWIVENQPYKDLADFVEKL-PNNFHKKENILPLIQIGAFD 824
I GL + GI D+ IV N+PY D DF+E++ + KK ++ LI+ G FD
Sbjct: 938 SILFGLKGMNGIGDDVIHHIVLNRPYSDFNDFIERMFKSGIIKKGQVIQLIKGGCFD 994
emb|CAA83754| (Z33091) DNA Polymerase III (alpha) [Mycoplasma capricolum]
Length = 198
Score = 150 bits (375), Expect = 6e-35
Identities = 71/169 (42%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Query: 560 IFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSIS 619
IFQ E+ M + + I A++++RPGP + IP ++ + + +D S+
Sbjct: 4 IFQLESKGMTDLISKXQVDSIELISIASALYRPGPQEMIPIYLENKKTNKF-KIIDKSVY 62
Query: 620 EILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHN 679
EILKPTYGI++YQEQ+MQ+ A FS KAD++RRA+SKK ++ ++ +F++SA N
Sbjct: 63 EILKPTYGIIVYQEQVMQMLNKVANFSYAKADIIRRAMSKKNNKVMQSMKLEFINSAIKN 122
Query: 680 GHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFY 728
S KA I++ IE+F+NYGFN+SH +Y +++ +AYFKAHF EFY
Sbjct: 123 NFSYNKANLIWNWIEKFSNYGFNKSHSISYSYISYWLAYFKAHFTTEFY 171
dbj|BAA17242| (D90904) DNA polymerase III alpha subunit [Synechocystis sp.]
Length = 458
Score = 105 bits (260), Expect = 2e-21
Identities = 94/333 (28%), Positives = 143/333 (42%), Gaps = 44/333 (13%)
Query: 701 FNRSHGFAYGALAFQIAYFKAHFPDEFYEIQL-----RDRKREVMILDALENGFEIEKPS 755
FN+SH AY + +Q AY KA++P E+ L K E + + G +E P
Sbjct: 38 FNKSHSTAYAYVTYQTAYLKANYPVEYMAALLTASSDSQEKVEKYRENCQKMGITVEPPD 97
Query: 756 INLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIV------ENQPYKDLADFVEKLPNNFH 809
IN + + I GL+ V+ + + I+ E + +K LADF ++
Sbjct: 98 INRSQRHFTPLGEAILFGLSAVRNLGEGAIEQIITARDNSEEKRFKSLADFCTQVDLRVV 157
Query: 810 KKENILPLIQIGAFDYADSNRGKLAYNL------------ADHANLLNYYSDDIFMASS- 856
+ I LI GAFD SNR +L ++L LN + D + S
Sbjct: 158 NRRAIETLIMAGAFDGVQSNRNQLLHDLELVIAWAQKRAKEKETGQLNIF-DSLTAGESI 216
Query: 857 ------GGGFAYHEA----EDYSETEKYDFEKNLLGIGVTPHPLQNLARRFE----GNFT 902
GF + ++S EK EK LG V+ HPL+++ R N
Sbjct: 217 KAKEAANNGFEQEPSAPPVAEFSLQEKLQLEKEHLGFYVSEHPLKSVQRSARLLSPINLV 276
Query: 903 PLAQLVKNRRMT---ILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQFSG 959
L Q ++++ ILV + I T K GQ MAFLT+ D + +FP Y +
Sbjct: 277 DLDQYKVRQKVSAVAILVAVKKIIT--KKNGQPMAFLTLEDMSGQSEAVVFPSNYERLQD 334
Query: 960 ELEQGKFYLISGKVTERNDELQLVTDRISPALE 992
L +G +I GKV R+D+ QL+ + + P E
Sbjct: 335 VLIEGSQQMIWGKVDRRDDQYQLIVEDLEPVEE 367
sp|Q9ZHF6|DPO3_THEMA DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII) >gi|3930535
(AF065313) DNA polymerase III; family C DNA polymerase
[Thermotoga maritima]
>gi|4981093|gb|AAD35661.1|AE001732_6 (AE001732) DNA
polymerase III, alpha subunit [Thermotoga maritima]
Length = 1367
Score = 90.9 bits (222), Expect = 5e-17
Identities = 136/633 (21%), Positives = 246/633 (38%), Gaps = 170/633 (26%)
Query: 279 VYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQV 338
+ Q+R+EKEL+ I G+ +LI +L++ + G RGS SLVA +LGIT+V
Sbjct: 776 IVQKRVEKELNAIINHGYAVLYLIAQELVQKSMSDGYVVG-SRGSVGSSLVANLLGITEV 834
Query: 339 DPVQ-----------------------------------------HNLFFERFLNPERVX 357
+P+ H + FE F+ E
Sbjct: 835 NPLPPHYRCPECKYFEVVEDDRYGAGYDLPNKNCPRCGAPLRKDGHGIPFETFMGFEGDK 894
Query: 358 XXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGKRQALRDVGKAFGMTEAELSN 417
+++ +G DHV + T +T+ +R A+ V
Sbjct: 895 VPDIDLNFSGEYQERAHRFVEELFGKDHVYRAGTINTIAERSAVGYVRS----------- 943
Query: 418 LTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVARRIEGMPRQTSTHASGVVL-- 475
YE K L+ +++R+ + I G+ R T H G+++
Sbjct: 944 ---------------YEEKTGKK---LRKAEMERLVSM---ITGVKRTTGQHPGGLMIIP 982
Query: 476 SEESLVNYVSLK-PSEDL---ALTQYEAPDVEAIGLLKIDFLGLRNLTIISRLRDLVKRR 531
++ + ++ ++ P+ D T + A + L+KID LG + T I L+DL
Sbjct: 983 KDKEVYDFTPIQYPANDRNAGVFTTHFAYETIHDDLVKIDALGHDDPTFIKMLKDLT--- 1039
Query: 532 QKIDIDPLKINLEDEDTLALFRA--------------GNTMGIFQFENPQMRRFLRNLAP 577
IDP+ I ++D DTLA+F + T GI +F +R L P
Sbjct: 1040 ---GIDPMTIPMDDPDTLAIFSSVKPLGVDPVELESDVGTYGIPEFGTEFVRGMLVETRP 1096
Query: 578 SKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQ 637
F ++V + + G ++ + ++ + +SE++ IM + I +
Sbjct: 1097 KSFAELVRISGLSH-GTDVWL------NNARDWINLGYAKLSEVISCRDDIMNF--LIHK 1147
Query: 638 VAQAFAGFSLGKADLLRRAISKKKGSELEKLR--EDFLDSASHNGHSKEKAEEIYDLIER 695
+ F + + + I+++ SE+ +L+ E F++S
Sbjct: 1148 GMEPSLAFKIMENVRKGKGITEEMESEMRRLKVPEWFIESCKR----------------- 1190
Query: 696 FANYGFNRSHGFAYGALAFQIAYFKAHFPDEFY-----------------------EIQL 732
Y F ++H AY ++AF+IAYFK H+P +FY + +L
Sbjct: 1191 -IKYLFPKAHAVAYVSMAFRIAYFKVHYPLQFYAAYFTIKGDQFDPVLVLRGKEAIKRRL 1249
Query: 733 RD----------RKREVMILD-ALE---NGFEIEKPSINLMKIGDF-VKNKKIRLGLAHV 777
R+ +K EV +L+ ALE GF P I F ++ +R+ +
Sbjct: 1250 RELKAMPAKDAQKKNEVSVLEVALEMILRGFSFLPPDIFKSDAKKFLIEGNSLRIPFNKL 1309
Query: 778 QGISRDLAKWIV---ENQPYKDLADFVEKLPNN 807
G+ +A+ I+ E +P+ + D +++ N
Sbjct: 1310 PGLGDSVAESIIRAREEKPFTSVEDLMKRTKVN 1342
gb|AAD23482.1|AF117853_1 (AF117853) DNA polymerase III holoenzyme alpha subunit [Vibrio
cholerae] >gi|4566843|gb|AAD23483.1|AF117854_1
(AF117854) DNA polymerase III holoenzyme alpha subunit
[Vibrio cholerae] >gi|4566844|gb|AAD23484.1|AF117855_1
(AF117855) DNA polymerase III holoenzyme alpha subunit
[Vibrio cholerae] >gi|4566845|gb|AAD23485.1|AF117856_1
(AF117856) DNA polymerase III holoenzyme alpha subunit
[Vibrio cholerae] >gi|4566846|gb|AAD23486.1|AF117857_1
(AF117857) DNA polymerase III holoenzyme alpha subunit
[Vibrio cholerae] >gi|4566847|gb|AAD23487.1|AF117858_1
(AF117858) DNA polymerase III holoenzyme alpha subunit
[Vibrio cholerae]
Length = 356
Score = 87.8 bits (214), Expect = 4e-16
Identities = 93/360 (25%), Positives = 147/360 (40%), Gaps = 49/360 (13%)
Query: 19 KVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPIISIELNF---EWRGLPI 75
KV ++ +G + + D NL +F A ++PII + E+
Sbjct: 3 KVPPLVKKVAAMGMPAMALTDFTNLCGLVKFYSTAHNCGVKPIIGADFTLQSEEFGDELT 62
Query: 76 AFSFIAKDTEGYKNL-LRISTLHNYGRRQFSDIQN------HLSGIALIIPETYGSLS-- 126
+ +AK+ GYKNL L IS + G Q + + H G+ ++ G +
Sbjct: 63 KLTLLAKNNVGYKNLTLLISKAYLRGHVQHQPVIDKAWLVEHAEGLIVLSGGKSGEVGRA 122
Query: 127 --------------------------ELTELSSVADEAFIGIDQLTDKGAKFNLPTLPFP 160
EL +E+++ D +++LP +
Sbjct: 123 LLKGNQQQVERCIEFYQTHFADHFYLELIRTGRADEESYLHF--ALDVAEQYDLPVVATN 180
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQ--RPEAYETYFLKYFPQALKNL 218
+ ++ E I A+ DG + ++ + Q R EA P+AL N
Sbjct: 181 EVVFITEESFEAHEIRVAIHDGYTLEDPRRPKNYSPKQYLRSEAEMCELFADIPEALANS 240
Query: 219 SALTAK--IAYQFDEKLELPRFDKKRQAVEH-LREEATLGLSARLEEKNLLTEVSSVNLQ 275
+ + + + E LP F A+E L ++ GL RLE L V +
Sbjct: 241 VEIAKRCNVTVRLGEYF-LPNFPTGGMAIEDFLVMKSREGLEERLE---FLFPDPEVRAK 296
Query: 276 DLSVYQERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGI 335
Y ERL+ EL VI+QMGF YFLIV + ++++++ DI G GRGS AGSLVAY L I
Sbjct: 297 RRPEYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPGRGSGAGSLVAYALKI 356
pir||JH0232 DNA-directed DNA polymerase (EC 2.7.7.7) III alpha chain (version 1)
- Bacillus subtilis
Length = 1437
Score = 77.3 bits (187), Expect = 6e-13
Identities = 153/670 (22%), Positives = 260/670 (37%), Gaps = 101/670 (15%)
Query: 103 QFSDIQNHLSGIALIIPETYGSLSELTELSSVADEAFIG--IDQLTDKGAKFNLPTLPFP 160
+ DI + + + PE Y L EL V DE + I +T G K N P +
Sbjct: 679 EVEDIASFYDYLEVQPPEVY---RHLLELELVRDEKALKEIIANITKLGEKLNKPVVATG 735
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA 220
+ YLN D IL + + G + + E E + +A + +
Sbjct: 736 NVHYLNDEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVT 795
Query: 221 LTAKIAYQFDEKLELPRFDKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVY 280
T K+A D+ ++ + D +E EE + E + S + +
Sbjct: 796 NTQKVASLVDD-IKPIKDDLYTPKIEGADEE--------IREMSYQRARSIYGEELPEIV 846
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ R+EKEL I GF +LI L++ + + G RGS SLVA + IT+V+P
Sbjct: 847 EARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNP 905
Query: 341 V---------QHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVT 391
V QH+ FF N V L + G D +
Sbjct: 906 VPPHYVCPECQHSEFF----NDGSVGSGFDLPDKTCPHCGTPL----KKDGHD-----IP 952
Query: 392 FST-LG-KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQR--FKA 441
F T LG K + D+ F G + + N T++L V R GT+ E K
Sbjct: 953 FETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKG 1012
Query: 442 EVLKNGKLKRIYEVARRIEG---MPRQTSTHASGVVLSEE--SLVNYVSLKPSEDLALTQ 496
N R E+ R ++G + R T H G+++ + + ++ ++ D ++
Sbjct: 1013 YAGDNNLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSE 1072
Query: 497 YEAP--DVEAI--GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALF 552
++ D +I LLK+D LG + T+I L+DL IDP I +D + + +F
Sbjct: 1073 WKTTHFDFHSIHDNLLKLDILGHDDPTVIRMLQDLS------GIDPKTIPTDDPEVMKIF 1126
Query: 553 RAGN--------------TMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFI 598
+ T+GI +F +R+ L + P+ F ++V + + G ++
Sbjct: 1127 QGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSH-GTDVWL 1185
Query: 599 PQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAIS 658
+ +E++ +SE++ IM+Y + G A + +
Sbjct: 1186 G------NAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVR 1231
Query: 659 KKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAY 718
K KG L ++ + +N + Y + Y F ++H AY +A +IAY
Sbjct: 1232 KGKG-----LTPEWEEEMKNNN-----VPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1281
Query: 719 FKAHFPDEFY 728
FK H +Y
Sbjct: 1282 FKVHHALLYY 1291
pir||A33920 DNA-directed DNA polymerase (EC 2.7.7.7) III alpha chain (version 2)
- Bacillus subtilis
Length = 1437
Score = 76.9 bits (186), Expect = 8e-13
Identities = 152/670 (22%), Positives = 260/670 (38%), Gaps = 101/670 (15%)
Query: 103 QFSDIQNHLSGIALIIPETYGSLSELTELSSVADEAFIG--IDQLTDKGAKFNLPTLPFP 160
+ DI + + + PE Y L EL V DE + I +T G K N P +
Sbjct: 679 EVEDIASFYDYLEVQPPEVY---RHLLELELVRDEKALKEIIANITKLGEKLNKPVVATG 735
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA 220
+ YLN D IL + + G + + E E + +A + +
Sbjct: 736 NVHYLNDEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVT 795
Query: 221 LTAKIAYQFDEKLELPRFDKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVY 280
T K+A D+ ++ + D +E EE + E + S + +
Sbjct: 796 NTQKVASLVDD-IKPIKDDLYTPKIEGADEE--------IRESSYQRARSIYGEELPEIV 846
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ R+EKEL I GF +LI L++ + + G RGS SLVA + IT+V+P
Sbjct: 847 EARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNP 905
Query: 341 V---------QHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVT 391
+ QH+ FF N V L + G D +
Sbjct: 906 LPPHYVCPECQHSEFF----NDGSVGSGFDLPDKTCPHCGTPL----KKDGHD-----IP 952
Query: 392 FST-LG-KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQR--FKA 441
F T LG K + D+ F G + + N T++L V R GT+ E K
Sbjct: 953 FETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKG 1012
Query: 442 EVLKNGKLKRIYEVARRIEG---MPRQTSTHASGVVLSEE--SLVNYVSLKPSEDLALTQ 496
N R E+ R ++G + R T H G+++ + + ++ ++ D ++
Sbjct: 1013 YAEDNNLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSE 1072
Query: 497 YEAP--DVEAI--GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALF 552
++ D +I LLK+D LG + T+I L+DL IDP I +D + + +F
Sbjct: 1073 WKTTHFDFHSIHDNLLKLDILGHDDPTVIRMLQDLS------GIDPKTIPTDDPEVMKIF 1126
Query: 553 RAGN--------------TMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFI 598
+ T+GI +F +R+ L + P+ F ++V + + G ++
Sbjct: 1127 QGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSH-GTDVWL 1185
Query: 599 PQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAIS 658
+ +E++ +SE++ IM+Y + G A + +
Sbjct: 1186 G------NAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVR 1231
Query: 659 KKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAY 718
K KG L ++ + +N + Y + Y F ++H AY +A +IAY
Sbjct: 1232 KGKG-----LTPEWEEEMKNNN-----VPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1281
Query: 719 FKAHFPDEFY 728
FK H +Y
Sbjct: 1282 FKVHHALLYY 1291
sp|P47729|DPO3_MYCPU DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII)
>gi|2127662|pir||S54697 DNA polymerase III - Mycoplasma
pulmonis (SGC3) >gi|487436 (U06833) DNA Polymerase III
[Mycoplasma pulmonis] >gi|1090178|prf||2018296A DNA
polymerase III [Mycoplasma pulmonis]
Length = 1435
Score = 76.5 bits (185), Expect = 1e-12
Identities = 135/608 (22%), Positives = 232/608 (37%), Gaps = 106/608 (17%)
Query: 185 FDESLTISSNELLQRPEAYETYFLKYFPQALKNLSALTAKIAYQFD------EKLELPRF 238
+ E + ++NE+ Q E FL Y P+ ++ + + I+ Q + +KL P+F
Sbjct: 755 YPEQIYKTTNEMKQ-----EFSFL-YDPELIEEIVVKSNLISSQIEKIQVIKDKLYTPKF 808
Query: 239 DKKRQAVEHL-REEATLGLSARLEEKNLLTEVSSVNLQDLSVYQERLEKELSVIHQMGFD 297
D ++ L E A L E + ++R+EKEL+ I GFD
Sbjct: 809 DDSHIKLKKLVYENAWKKYGKNLPE----------------IIEQRIEKELTPILNYGFD 852
Query: 298 DYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPVQHNLFFERFLNPERVX 357
+ I + L++ + G RGS SLVA + GIT+V+P+ + + E V
Sbjct: 853 VIYWISSILVQKSLSDGYLVG-SRGSIGSSLVATLSGITEVNPLAPHYICSKCQYFELVK 911
Query: 358 XXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFST-LG-KRQALRDVGKAF-GMTEAE 414
K D Q + F T LG K + D+ F G + +
Sbjct: 912 DPMTNSGFDLDDKK----CPKCNSFLDKDGQTIPFETFLGFKADKVPDIDLNFSGEYQGK 967
Query: 415 LSNLTRMLVRRFGTLADEYENNQRFKAEVLKNGKLKRIYEVA-------------RRIEG 461
+ + + L FG+ AE G +K+ E A + G
Sbjct: 968 IHDEVKRL---FGSKHTFRAGTISTVAEKTAYGYIKKYLETASLDYSDNFVDFLTEKSTG 1024
Query: 462 MPRQTSTHASGVVLSEESL-------VNYVSLKPSEDLALTQYEAPDVEAI--GLLKIDF 512
+ R T H G+++ + VN+ + T + D AI +LK+D
Sbjct: 1025 VKRTTGQHPGGIIIIPKEFDVEDFTPVNFPANDTESSWKTTHF---DFHAIHDNVLKLDI 1081
Query: 513 LGLRNLTIISRL--------RDLVKRRQKID---IDPLKINLEDEDTLALFRAGNTMGIF 561
LG + T + L +D+ K+ +KI P + + E+ L +GI
Sbjct: 1082 LGHDDPTALKMLEKLTGVNVKDIPKKDEKIISIFTSPKALGISSEEILG--EKTGALGIP 1139
Query: 562 QFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTVDDSISEI 621
+F +R+ L P F D+V + + HG ++ I +
Sbjct: 1140 EFGTNFVRQMLSEAKPKTFADLVSISGL---------------SHGTDVWINNAHYIIQS 1184
Query: 622 LKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLDSASHNGH 681
L T +I + V G + + + + K KG LE+ +E ++ N +
Sbjct: 1185 LGKTLDQVISCRDDIMVDLIKKGVPIDLSFTIMEQVRKGKGLSLEQKKEKLIEHGIENWY 1244
Query: 682 SKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFYEIQLRDRKR---- 737
E E+I Y F ++H AY +A+++A++K ++P E+Y R
Sbjct: 1245 I-ESMEKI--------KYMFPKAHATAYVLMAWRVAFYKVYYPLEYYATYFSTRTEFFDI 1295
Query: 738 EVMILDAL 745
E+M D L
Sbjct: 1296 EIMSKDKL 1303
sp|P47277|DPO3_MYCGE DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII)
>gi|1361490|pir||D64203 DNA polymerase III (polC) homolog
- Mycoplasma genitalium (SGC3) >gi|3844641 (U39682) DNA
polymerase III, subunit alpha (polC-1) [Mycoplasma
genitalium]
Length = 1451
Score = 76.1 bits (184), Expect = 1e-12
Identities = 116/534 (21%), Positives = 222/534 (40%), Gaps = 90/534 (16%)
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ER+EKEL+ I GF F I L+ + + + G RGS SL+A ++GI++++P
Sbjct: 856 KERIEKELNAIISNGFGIVFWISHLLVEQSVKDGYFVGP-RGSIGSSLIANLIGISEINP 914
Query: 341 VQHNLFFER---FLNPERVXXXXXXXXXXXXXXXELLAYMKNR----------YGSDHVA 387
+ + E+ F + V E ++ + + D +
Sbjct: 915 LAAHYLCEQCHYFEVSDSVDDGYDLMIRDCPKCHEKASFKGDGHNIPFATFMGFSGDKIP 974
Query: 388 QI-VTFSTLGKRQALRDVGKAFGMTEAELSNLTRMLVRRFGTLADEYENNQ----RFKAE 442
I + FS+ + +A V K FG+ R GT+A E R E
Sbjct: 975 DIDLNFSSEYQAKAHDYVRKLFGVNNTF----------RAGTIATVAEKTAYGYARNYFE 1024
Query: 443 VLKNGKLKRIYEVAR---RIEGMPRQTSTHASGVVL--SEESLVNYVSLKPSEDLALTQY 497
++K L E+ R ++ G+ R T H G+++ S+ S+ + D +++
Sbjct: 1025 IIKRVDLATTAEIERFKQKLIGIKRTTGQHPGGIMIFPSDHSVYEFTPCGFPADDVESEW 1084
Query: 498 EAPDVE--AIG--LLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFR 553
+ E A+G +LK+D LG + T++ L DL K I+P I D++ +++F
Sbjct: 1085 KTTHFEYDALGDAILKLDILGQDDPTMLKHLADLTK------INPQNIPHFDKNLISMFS 1138
Query: 554 AGNTM--------------GIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIP 599
+ + GI +F +R+ L P F D++ + +
Sbjct: 1139 SNKPLNLKPGIVDEVTGAVGIPEFGTKFVRKILEQTKPKDFADLIRVSGLSHG------- 1191
Query: 600 QFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISK 659
+ V + ++++ + ++ +++ IM+Y L+ + +
Sbjct: 1192 KNVWADNAQKLIKSNRLTLRDVIACRDDIMLY--------------------LINKGMQA 1231
Query: 660 KKGSEL-EKLREDFLDSASHNGHSKEKAEEIYDLIERFA-NYGFNRSHGFAYGALAFQIA 717
K E+ EK+R+ +A + E Y + NY F ++H AY +A++IA
Sbjct: 1232 KDAFEIMEKVRKGIKVNAKEVSLMQNCGVEQYWINACLKINYLFPKAHAAAYVLMAWRIA 1291
Query: 718 YFKAHFPDEFYEIQLRDRKREVMILDALENGFEIEKPSINLMKIGDFVKNKKIR 771
+FK + P +Y L + +E I + E G+E K ++ ++ + KKI+
Sbjct: 1292 WFKLYHPLSYYACLLSFKLKEHDI-NGFEKGYEFIKNRLD--ELNKLYRIKKIK 1342
sp|P13267|DPO3_BACSU DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII)
>gi|40060|emb|CAA36362| (X52116) DNA polymerase III (AA
1-1437) [Bacillus subtilis] >gi|2634030|emb|CAB13531|
(Z99112) DNA polymerase III (alpha subunit) [Bacillus
subtilis]
Length = 1437
Score = 76.1 bits (184), Expect = 1e-12
Identities = 152/670 (22%), Positives = 260/670 (38%), Gaps = 101/670 (15%)
Query: 103 QFSDIQNHLSGIALIIPETYGSLSELTELSSVADEAFIG--IDQLTDKGAKFNLPTLPFP 160
+ DI + + + PE Y L EL V DE + I +T G K N P +
Sbjct: 679 EVEDIASFYDYLEVQPPEVY---RHLLELELVRDEKALKEIIANITKLGEKLNKPVVATG 735
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA 220
+ YLN D IL + + G + + E E + +A + +
Sbjct: 736 NVHYLNDEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVT 795
Query: 221 LTAKIAYQFDEKLELPRFDKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVY 280
T K+A D+ ++ + D +E EE + E + S + +
Sbjct: 796 NTQKVASLVDD-IKPIKDDLYTPKIEGADEE--------IREMSYQRARSIYGEELPEIV 846
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ R+EKEL I GF +LI L++ + + G RGS SLVA + IT+V+P
Sbjct: 847 EARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNP 905
Query: 341 V---------QHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVT 391
+ QH+ FF N V L + G D +
Sbjct: 906 LPPHYVCPECQHSEFF----NDGSVGSGFDLPDKTCPHCGTPL----KKDGHD-----IP 952
Query: 392 FST-LG-KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQR--FKA 441
F T LG K + D+ F G + + N T++L V R GT+ E K
Sbjct: 953 FETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKG 1012
Query: 442 EVLKNGKLKRIYEVARRIEG---MPRQTSTHASGVVLSEE--SLVNYVSLKPSEDLALTQ 496
N R E+ R ++G + R T H G+++ + + ++ ++ D ++
Sbjct: 1013 YAGDNNLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSE 1072
Query: 497 YEAP--DVEAI--GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALF 552
++ D +I LLK+D LG + T+I L+DL IDP I +D + + +F
Sbjct: 1073 WKTTHFDFHSIHDNLLKLDILGHDDPTVIRMLQDLS------GIDPKTIPTDDPEVMKIF 1126
Query: 553 RAGN--------------TMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFI 598
+ T+GI +F +R+ L + P+ F ++V + + G ++
Sbjct: 1127 QGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSH-GTDVWL 1185
Query: 599 PQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAIS 658
+ +E++ +SE++ IM+Y + G A + +
Sbjct: 1186 G------NAQELIHNNICELSEVIGCRDDIMVYL--------IYQGLEPSLAFKIMEFVR 1231
Query: 659 KKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAY 718
K KG L ++ + +N + Y + Y F ++H AY +A +IAY
Sbjct: 1232 KGKG-----LTPEWEEEMKNNN-----VPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1281
Query: 719 FKAHFPDEFY 728
FK H +Y
Sbjct: 1282 FKVHHALLYY 1291
gi|143342 (M22996) polymerase III [Bacillus subtilis]
Length = 1437
Score = 75.7 bits (183), Expect = 2e-12
Identities = 151/670 (22%), Positives = 260/670 (38%), Gaps = 101/670 (15%)
Query: 103 QFSDIQNHLSGIALIIPETYGSLSELTELSSVADEAFIG--IDQLTDKGAKFNLPTLPFP 160
+ DI + + + PE Y L EL V DE + I +T G K N P +
Sbjct: 679 EVEDIASFYDYLEVQPPEVY---RHLLELELVRDEKALKEIIANITKLGEKLNKPVVATG 735
Query: 161 AIRYLNFADNEILAILHAVRDGVSFDESLTISSNELLQRPEAYETYFLKYFPQALKNLSA 220
+ YLN D IL + + G + + E E + +A + +
Sbjct: 736 NVHYLNDEDKIYRKILISSQGGANPLNRHELPKVHFRTTDEMLEAFSFLGEEKAKEIVVT 795
Query: 221 LTAKIAYQFDEKLELPRFDKKRQAVEHLREEATLGLSARLEEKNLLTEVSSVNLQDLSVY 280
T K+A D+ ++ + D +E EE + E + S + +
Sbjct: 796 NTQKVASLVDD-IKPIKDDLYTPKIEGADEE--------IRESSYQRARSIYGEELPEIV 846
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
+ R+EKEL I GF +LI L++ + + G RGS SLVA + IT+V+P
Sbjct: 847 EARIEKELKSIIGHGFAVIYLISHKLVKRSLDDGYLVG-SRGSVGSSLVATLTEITEVNP 905
Query: 341 V---------QHNLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVT 391
+ QH+ FF N V L + G D +
Sbjct: 906 LPPHYVCPECQHSEFF----NDGSVGSGFDLPDKTCPHCGTPL----KKDGHD-----IP 952
Query: 392 FST-LG-KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQ--RFKA 441
F T LG K + D+ F G + + N T++L V R GT+ E K
Sbjct: 953 FETFLGFKGDKVPDIDLNFSGEYQPQAHNYTKVLFGEDNVYRAGTIGTVAEKTAYGYVKG 1012
Query: 442 EVLKNGKLKRIYEVARRIE---GMPRQTSTHASGVVLSEE--SLVNYVSLKPSEDLALTQ 496
N R E+ R ++ G+ R T H G+++ + + ++ ++ D ++
Sbjct: 1013 YAEDNNLHMRGAEIDRLVQGCTGVKRTTGQHPGGIIVVPDYMDIYDFSPIQFPADATGSE 1072
Query: 497 YEAP--DVEAI--GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALF 552
++ D +I LLK+D LG + T+I L+DL IDP I +D + + +F
Sbjct: 1073 WKTTHFDFHSIHDNLLKLDILGHDDPTVIRMLQDL------SGIDPKTIPTDDPEVMKIF 1126
Query: 553 RA--------------GNTMGIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFI 598
+ T+GI +F +R+ L + P+ F ++V + + G ++
Sbjct: 1127 QGTESLGVTEEQIGCKTGTLGIPEFGTRFVRQMLEDTKPTTFSELVQISGLSH-GTDVWL 1185
Query: 599 PQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAIS 658
+ ++++ +SE++ IM+Y + G A + +
Sbjct: 1186 ------GNAQDLIHNNICELSEVIGCRDDIMVY--------LIYQGLEPSLAFKIMEFVR 1231
Query: 659 KKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAY 718
K KG L ++ + +N + Y + Y F ++H AY +A +IAY
Sbjct: 1232 KGKG-----LTPEWEEEMKNN-----NVPDWYIDSCKKIKYMFPKAHAAAYVLMAVRIAY 1281
Query: 719 FKAHFPDEFY 728
FK H +Y
Sbjct: 1282 FKVHHALLYY 1291
sp|Q53665|DPO3_STAAU DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII)
>gi|1483182|dbj|BAA13160| (D86727) DNA polymerase III
[Staphylococcus aureus]
Length = 1435
Score = 71.4 bits (172), Expect = 4e-11
Identities = 116/490 (23%), Positives = 192/490 (38%), Gaps = 90/490 (18%)
Query: 282 ERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPV 341
+RLEKEL I GF +LI L++ + + G RGS S VA + IT+V+P+
Sbjct: 845 DRLEKELKSIIGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPL 903
Query: 342 QH-----NLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLG 396
N F N V L + G D I LG
Sbjct: 904 PPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLI----KEGQD----IPFEKFLG 955
Query: 397 -KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQ--RFKAEVLKNG 447
K + D+ F G + N T++L V R GT+ E K + G
Sbjct: 956 FKGDKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQG 1015
Query: 448 KLKRIYEVARRIEG---MPRQTSTHASGVVLSEESLVNYVSLKPSEDLALTQYEAPDVEA 504
KR E+ R ++G + T H G+++ + + Y D QY A D +
Sbjct: 1016 IHKRGAEIDRLVKGCTGVKATTGQHPGGIIVVPDYMDIY-------DFTPIQYPADDQNS 1068
Query: 505 I-------------GLLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLAL 551
+LK+D LG + T+I L+DL IDP I ++D++ + +
Sbjct: 1069 AWMTTHFDFHSIHDNVLKLDILGHDDPTMIRMLQDLS------GIDPKTIPVDDKEVMQI 1122
Query: 552 FRAGNTMGIFQFE-------------NPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFI 598
F ++G+ + E + R+ L + P+ F ++V + + G ++
Sbjct: 1123 FSTPESLGVTEDEILCKTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSH-GTDVWL 1181
Query: 599 PQFVARRHGKEIVPTVDDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAIS 658
+ +E++ T +S ++ IM+Y +AG A + ++
Sbjct: 1182 G------NAQELIKTGICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKIMESVR 1227
Query: 659 KKKGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAY 718
K KG L E+ +++ N E + D + Y F ++H AY +A +IAY
Sbjct: 1228 KGKG-----LTEEMIETMKEN----EVPDWYLDSCLKI-KYIFPKAHAAAYVLMAVRIAY 1277
Query: 719 FKAHFPDEFY 728
FK H P +Y
Sbjct: 1278 FKVHHPLYYY 1287
sp|P75080|DPO3_MYCPN DNA POLYMERASE III, ALPHA CHAIN POLC-TYPE (POLIII)
>gi|2146106|pir||S73446 DNA polymerase III alpha chain
polC - Mycoplasma pneumoniae (SGC3) (ATCC 29342)
>gi|1673778 (AE000014) Mycoplasma pneumoniae, DNA
polymerase III (dnaE) alpha chain; similar to Swiss-Prot
Accession Number P13267, from B. subtilis [Mycoplasma
pneumoniae]
Length = 1443
Score = 64.4 bits (154), Expect = 5e-09
Identities = 112/498 (22%), Positives = 197/498 (39%), Gaps = 81/498 (16%)
Query: 281 QERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDP 340
++R+++EL I GF + I + LL QD Y RGS SLVA ++GI++++P
Sbjct: 848 EQRIQEELKAIIDNGFGIIYWI-SHLLVKQSVQDGYFVGPRGSIGSSLVANLIGISEINP 906
Query: 341 VQHNLFFER---FLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLGK 397
+ + E F E V A+ G H TF
Sbjct: 907 LVPHYLCESCQYFEVNEEVDDGYDLMVRDCPKCGAKAAFK----GDGHNIPFATFMGFAG 962
Query: 398 RQALRDVGKAFGMT-EAELSNLTRMLVR-----RFGTLADEYENNQ----RFKAEVLKNG 447
+ + D+ F +A+ R L R GT+A E R E++K
Sbjct: 963 DK-IPDIDLNFSSEYQAKAHAYVRELFGEQYTFRAGTIATVAEKTAYGYARNYFEIIKQT 1021
Query: 448 KLKRIYEVAR---RIEGMPRQTSTHASGVVLS-------EESLVNYVSLKPSEDLALTQY 497
+L E+ R ++ G+ R T H G+++ E + Y + S D T +
Sbjct: 1022 ELATAPEIERFKQKLVGIKRTTGQHPGGIMIFPNHKSVYEFTPCGYPADDTSSDWKTTHF 1081
Query: 498 EAPDVEAIG--LLKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAG 555
E +A+G +LK+D LG + T++ L DL ++P I D+ +F +
Sbjct: 1082 E---YDALGNTILKLDILGQDDPTMLKHLGDLTH------VNPQNIPRFDKKLTEMFWSV 1132
Query: 556 NTM--------------GIFQFENPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQF 601
N + GI +F +R+ L P F D++ + + +
Sbjct: 1133 NPLKLKPHYLDEPTGAIGIPEFGTKFVRKILEQTKPKGFGDLIRVSGLSHG-------KN 1185
Query: 602 VARRHGKEIVPTVDDSISEILKPTYGIMIYQ-EQIMQVAQAFAGFSLGKADLLRRAISKK 660
V + ++I+ + S+ +++ IM+Y + MQ AF +++ + +
Sbjct: 1186 VWADNAQKILKDQNLSLKDVIACRDDIMLYLIHKGMQAKDAF--------EIMEKV---R 1234
Query: 661 KGSELEKLREDFLDSASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFK 720
KG L + S H +I +Y F ++H AY +A++IA+FK
Sbjct: 1235 KGIALNAKEVQLMQSNGVEQHWINSCLKI--------SYLFPKAHAAAYVLMAWRIAWFK 1286
Query: 721 AHFPDEFYEIQLRDRKRE 738
+ P +Y L + +E
Sbjct: 1287 LYHPLSYYACLLSFKLKE 1304
pir||S52267 DNA polymerase III - Staphylococcus aureus >gi|642270|emb|CAA88043|
(Z48003) DNA polymerase III [Staphylococcus aureus]
Length = 1415
Score = 63.6 bits (152), Expect = 8e-09
Identities = 109/474 (22%), Positives = 188/474 (38%), Gaps = 78/474 (16%)
Query: 282 ERLEKELSVIHQMGFDDYFLIVADLLRYAREQDIYCGMGRGSAAGSLVAYVLGITQVDPV 341
+RLEKEL I GF +LI L++ + + G RGS S VA + IT+V+P+
Sbjct: 845 DRLEKELKSIIGNGFAVIYLISQRLVKKSLDDGYLVG-SRGSVGSSFVATMTEITEVNPL 903
Query: 342 QH-----NLFFERFLNPERVXXXXXXXXXXXXXXXELLAYMKNRYGSDHVAQIVTFSTLG 396
N F N V L + G D I LG
Sbjct: 904 PPHYICPNCKTSEFFNDGSVGSGFDLPDKTCETCGAPLI----KEGQD----IPFEKFLG 955
Query: 397 -KRQALRDVGKAF-GMTEAELSNLTRML-----VRRFGTLADEYENNQ--RFKAEVLKNG 447
K + D+ F G + N T++L V R GT+ E K + G
Sbjct: 956 FKGDKVPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGYVKGYLNDQG 1015
Query: 448 KLKRIYEVARRIEGMPRQTSTHASGVVLSEESLVNYVSLKPSEDLALTQYEAPDVEAIGL 507
KR E+ R ++G + + + + + Y + + T ++ + +
Sbjct: 1016 IHKRGAEIDRLVKGY----------MDIYDFTPIQYPADDQNSAWMTTHFDFHSIHD-NV 1064
Query: 508 LKIDFLGLRNLTIISRLRDLVKRRQKIDIDPLKINLEDEDTLALFRAGNTMGIFQFE--- 564
LK+D LG + T+I L+DL IDP I ++D++ + +F ++G+ + E
Sbjct: 1065 LKLDILGHDDPTMIRMLQDLS------GIDPKTIPVDDKEVMQIFSTPESLGVTEDEILC 1118
Query: 565 ----------NPQMRRFLRNLAPSKFDDIVDATSIFRPGPSQFIPQFVARRHGKEIVPTV 614
+ R+ L + P+ F ++V + + G ++ + +E++ T
Sbjct: 1119 KTGTFGVPNSDRIRRQMLEDTKPTTFSELVQISGLSH-GTDVWLG------NAQELIKTG 1171
Query: 615 DDSISEILKPTYGIMIYQEQIMQVAQAFAGFSLGKADLLRRAISKKKGSELEKLREDFLD 674
+S ++ IM+Y +AG A + ++ K KG L E+ ++
Sbjct: 1172 ICDLSSVIGCRDDIMVYL--------MYAGLEPSMAFKIMESVRKGKG-----LTEEMIE 1218
Query: 675 SASHNGHSKEKAEEIYDLIERFANYGFNRSHGFAYGALAFQIAYFKAHFPDEFY 728
+ N E + D + Y F ++H AY +A +IAYFK H P +Y
Sbjct: 1219 TMKEN----EVPDWYLDSCLKI-KYIFPKAHAAAYVLMAVRIAYFKVHHPLYYY 1267
sp|P34699|DP3A_SACER DNA POLYMERASE III, ALPHA CHAIN >gi|282534|pir||A42606 orfA 5' to
orf405 - Saccharopolyspora erythraea (fragment)
Length = 264
Score = 48.0 bits (112), Expect = 4e-04
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 11/140 (7%)
Query: 866 EDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEG-NFTPLAQLVKNRR------MTILVE 918
+++ + +E+ +LG+ V+ HPL R T +A+LV R + I
Sbjct: 44 DEWPRKQMLSYEREMLGLYVSAHPLDGAERLLAPYQDTGIAELVGGEREAGKDQVKIAGM 103
Query: 919 INYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPEIYRQFSGELEQGKFYLISGKVTERND 978
I+ I+ K G A +T+ D + +V FP+ Y F+ L + + G++ ER
Sbjct: 104 ISGIQRRINKNGHPWAIVTLEDLDASVEVLFFPKSYEMFADCLLEDTAIAVKGRINEREG 163
Query: 979 ELQLVTDRISP----ALETD 994
+ + P A ETD
Sbjct: 164 TISIFASDAVPVDISAAETD 183
gb|AAD43766.1|AF152505_1 (AF152505) protocadherin gamma A11 short form protein [Homo sapiens]
Length = 837
Score = 47.6 bits (111), Expect = 5e-04
Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 41/303 (13%)
Query: 724 PDEFYEIQLRDRKREVMILD-ALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISR 782
P+ ++ +QLR R + LE + EK + +L+ + IR G ++ +
Sbjct: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
Query: 783 DLAKWIVENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHAN 842
D+ I P + + +P N +L + A D + G++ Y+ +
Sbjct: 235 DVNDHI----PMFTQSVYRVSVPENISSGTRVL---MVNATDPDEGINGEVMYSFRN--- 284
Query: 843 LLNYYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFT 902
+ + +IF S G + + EKY F + ++ + G FT
Sbjct: 285 -MESKASEIFQLDSQTGEV--QVRGSLDFEKYRF-----------YEMEIQGQDGGGLFT 330
Query: 903 PLAQLV-------KNRRMTILVEINYIRTHRTKTGQTMAFLTVSD--SRENFDVTLFPEI 953
L+ +TI IN I + G +A L V D S EN V+ F
Sbjct: 331 TTTMLITVVDVNDNAPEITITSSINSI-LENSPPGTVIALLNVQDQDSGENGQVSCFIPN 389
Query: 954 YRQFSGELEQGKFY-LISGKVTERN-----DELQLVTDRISPALETDRKLWLNLRDDKYN 1007
+ F E G +Y LI+ +V +R + TD+ SP L + +WLN+ DD N
Sbjct: 390 HLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDN 449
Query: 1008 QKI 1010
+
Sbjct: 450 PPV 452
gb|AAD43765.1|AF152504_1 (AF152504) protocadherin gamma A11 [Homo sapiens]
Length = 750
Score = 47.6 bits (111), Expect = 5e-04
Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 41/303 (13%)
Query: 724 PDEFYEIQLRDRKREVMILD-ALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISR 782
P+ ++ +QLR R + LE + EK + +L+ + IR G ++ +
Sbjct: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
Query: 783 DLAKWIVENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHAN 842
D+ I P + + +P N +L + A D + G++ Y+ +
Sbjct: 235 DVNDHI----PMFTQSVYRVSVPENISSGTRVL---MVNATDPDEGINGEVMYSFRN--- 284
Query: 843 LLNYYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFT 902
+ + +IF S G + + EKY F + ++ + G FT
Sbjct: 285 -MESKASEIFQLDSQTGEV--QVRGSLDFEKYRF-----------YEMEIQGQDGGGLFT 330
Query: 903 PLAQLV-------KNRRMTILVEINYIRTHRTKTGQTMAFLTVSD--SRENFDVTLFPEI 953
L+ +TI IN I + G +A L V D S EN V+ F
Sbjct: 331 TTTMLITVVDVNDNAPEITITSSINSI-LENSPPGTVIALLNVQDQDSGENGQVSCFIPN 389
Query: 954 YRQFSGELEQGKFY-LISGKVTERN-----DELQLVTDRISPALETDRKLWLNLRDDKYN 1007
+ F E G +Y LI+ +V +R + TD+ SP L + +WLN+ DD N
Sbjct: 390 HLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDN 449
Query: 1008 QKI 1010
+
Sbjct: 450 PPV 452
gb|AAD43714.1| (AF152320) protocadherin gamma A11 [Homo sapiens]
Length = 935
Score = 47.6 bits (111), Expect = 5e-04
Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 41/303 (13%)
Query: 724 PDEFYEIQLRDRKREVMILD-ALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISR 782
P+ ++ +QLR R + LE + EK + +L+ + IR G ++ +
Sbjct: 175 PNNYFSLQLRGRTDGAKNPELVLEGSLDREKEAAHLLLLTALDGGDPIRKGAVPIRVVVL 234
Query: 783 DLAKWIVENQPYKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGKLAYNLADHAN 842
D+ I P + + +P N +L + A D + G++ Y+ +
Sbjct: 235 DVNDHI----PMFTQSVYRVSVPENISSGTRVL---MVNATDPDEGINGEVMYSFRN--- 284
Query: 843 LLNYYSDDIFMASSGGGFAYHEAEDYSETEKYDFEKNLLGIGVTPHPLQNLARRFEGNFT 902
+ + +IF S G + + EKY F + ++ + G FT
Sbjct: 285 -MESKASEIFQLDSQTGEV--QVRGSLDFEKYRF-----------YEMEIQGQDGGGLFT 330
Query: 903 PLAQLV-------KNRRMTILVEINYIRTHRTKTGQTMAFLTVSD--SRENFDVTLFPEI 953
L+ +TI IN I + G +A L V D S EN V+ F
Sbjct: 331 TTTMLITVVDVNDNAPEITITSSINSI-LENSPPGTVIALLNVQDQDSGENGQVSCFIPN 389
Query: 954 YRQFSGELEQGKFY-LISGKVTERN-----DELQLVTDRISPALETDRKLWLNLRDDKYN 1007
+ F E G +Y LI+ +V +R + TD+ SP L + +WLN+ DD N
Sbjct: 390 HLPFKLEKTYGNYYKLITSRVLDRELVQSYNITLTATDQGSPPLSAETHVWLNVADDNDN 449
Query: 1008 QKI 1010
+
Sbjct: 450 PPV 452
gi|3676693 (AF083949) DNA polymerase; DnaE [Treponema denticola]
Length = 361
Score = 45.7 bits (106), Expect = 0.002
Identities = 28/101 (27%), Positives = 46/101 (44%), Gaps = 11/101 (10%)
Query: 2 FAPLNTKTEYSFLDSVVKVDDYLETAHRLGYQTVGICDVGNLHAAFRFVRKAQKFNLQPI 61
F L+ +++S LD V A +LG + + D GN+ A F ++ N++PI
Sbjct: 5 FVHLHVHSDFSLLDGAASVKALAAKAEKLGQTALALTDHGNMFGAINFYNACKEKNIKPI 64
Query: 62 ISIEL------NFEWRGLPIAFSF-----IAKDTEGYKNLL 91
I E FE + P + +AK+ GY+NL+
Sbjct: 65 IGCEFYVAPESRFEKKETPGGKKYYHLILLAKNETGYRNLM 105
emb|CAB56071.1| (AJ238763) DNA polymerase III alpha subunit [Rickettsia felis]
Length = 386
Score = 44.5 bits (103), Expect = 0.004
Identities = 54/236 (22%), Positives = 100/236 (41%), Gaps = 26/236 (11%)
Query: 738 EVMILDALENGFEIEKPSINLMKIGDFVKNKKIRLGLAHVQGISRDLAKWIVENQP---- 793
E M +D+ G +I+ ++ G + I L ++G++ + K + + +
Sbjct: 38 ESMKMDSRFCGNDIKGSRNDIEDTGYDKEKSTIIFALGAIKGVTPNFGKLVTDERKARGA 97
Query: 794 YKDLADFVEKLPNNFHKKENILPLIQIGAFDYADSNRGK--------LAYNLADHANLLN 845
+K + DF+E+LP + + LI+ G FD NR + LAY+ + HA +
Sbjct: 98 FKSITDFIERLPLKSINSKLLENLIKSGCFDELHDNRLQLFSSISKLLAYSASYHAEQES 157
Query: 846 YYSDDIFMASSGGGFAYHEAEDYSETEK---YDFEKNLLGIGVTPHPLQNLARRFEG-NF 901
I ++S A DY++ Y+FE +G+ ++ HPL F N
Sbjct: 158 NQFSLIKVSSLSPNILI--ASDYADNNTLAFYEFES--MGLFISNHPLTQYQEIFSRLNI 213
Query: 902 TPLAQLVKN-----RRMTILVEINYIRTHRTKTGQTMAFLTVSDSRENFDVTLFPE 952
A L N R+ + I + + G+ + L +SD F++++F E
Sbjct: 214 LNTADLHNNLPDGTNRVNLAGVIQKKDSRMSARGRFVT-LVLSDPENIFELSIFSE 268
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278162908
Number of Sequences: 457798
Number of extensions: 11818976
Number of successful extensions: 30210
Number of sequences better than 1.0e-02: 52
Number of HSP's better than 0.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 29858
Number of HSP's gapped (non-prelim): 120
length of query: 1060
length of database: 140,871,481
effective HSP length: 60
effective length of query: 1000
effective length of database: 113,403,601
effective search space: 113403601000
effective search space used: 113403601000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 101 (43.8 bits)