Score E
Sequences producing significant alignments: (bits) Value
sp|P42976|DAPB_BACSU DIHYDRODIPICOLINATE REDUCTASE >gi|1146... 260 8e-69
gb|AAD50999.1|AF170923_3 (AF170923) dihydrodipicolinate red... 218 4e-56
gi|755603 (L38424) dihydropicolinate reductase [Bacillus su... 217 1e-55
sp|P72642|DAPB_SYNY3 DIHYDRODIPICOLINATE REDUCTASE >gi|1651... 214 5e-55
emb|CAA20290| (AL031260) putative dihydrodipicolinate reduc... 212 3e-54
emb|CAA15569| (AL008967) dapB [Mycobacterium tuberculosis] 199 2e-50
sp|P72024|DAPB_MYCTU DIHYDRODIPICOLINATE REDUCTASE >gi|1513... 198 4e-50
sp|P42462|DAPB_CORGL DIHYDRODIPICOLINATE REDUCTASE >gi|2887... 198 4e-50
sp|P40110|DAPB_BRELA DIHYDRODIPICOLINATE REDUCTASE >gi|4238... 198 4e-50
sp|P24703|YSOD_COXBU HYPOTHETICAL 18.4 KD PROTEIN IN SODB 3... 147 1e-34
sp|P46829|DAPB_MYCBO DIHYDRODIPICOLINATE REDUCTASE >gi|1076... 134 6e-31
sp|Q57865|DAPB_METJA DIHYDRODIPICOLINATE REDUCTASE >gi|2127... 122 3e-27
gi|2649691 (AE001041) dihydrodipicolinate reductase (dapB) ... 114 9e-25
gi|2621890 (AE000858) dihydrodipicolinate reductase [Methan... 113 2e-24
sp|O67061|DAPB_AQUAE DIHYDRODIPICOLINATE REDUCTASE >gi|2983... 100 2e-20
sp|P04036|DAPB_ECOLI DIHYDRODIPICOLINATE REDUCTASE >gi|6605... 93 3e-18
sp|P45153|DAPB_HAEIN DIHYDRODIPICOLINATE REDUCTASE >gi|1073... 92 6e-18
sp|Q52419|DAPB_PSESZ DIHYDRODIPICOLINATE REDUCTASE >gi|1185... 91 8e-18
sp|Q9ZE14|DAPB_RICPR DIHYDRODIPICOLINATE REDUCTASE >gi|3860... 89 5e-17
emb|CAB41012.1| (AJ238308) dihydrodipicolinate reductase [B... 84 1e-15
emb|CAB72680.1| (AL139074) dihydrodipicolinate reductase [C... 83 3e-15
gb|AAC67960.1| (AE001309) Dihydrodipicolinate Reductase [Ch... 79 3e-14
sp|P45415|DAPB_KLEPN DIHYDRODIPICOLINATE REDUCTASE >gi|2126... 79 4e-14
emb|CAA56219.1| (X79817) dihydrodipicolinate reductase [Kle... 79 4e-14
gb|AAD36587.1|AE001799_19 (AE001799) dihydrodipicolinate re... 77 2e-13
gi|4155000 (AE001480) DIHYDRODIPICOLINATE REDUCTASE [Helico... 60 2e-08
gi|1763301 (U75328) dihydrodipicolinate reductase [Helicoba... 59 6e-08
gb|AAD19184| (AE001685) Dihydrodipicolinate Reductase [Chla... 58 7e-08
emb|CAA10958.1| (AJ222715) DapB [Sinorhizobium meliloti] 58 7e-08
sp|P94844|DAPB_HELPY DIHYDRODIPICOLINATE REDUCTASE >gi|2313... 57 1e-07
sp|P38103|DAPB_PSEAE DIHYDRODIPICOLINATE REDUCTASE >gi|1072... 57 2e-07
sp|P42976|DAPB_BACSU DIHYDRODIPICOLINATE REDUCTASE >gi|1146234 (L47709)
dihydrodipicolinate reductase [Bacillus subtilis]
>gi|2634667|emb|CAB14165| (Z99115) dihydrodipicolinate
reductase [Bacillus subtilis]
Length = 267
Score = 260 bits (658), Expect = 8e-69
Identities = 134/267 (50%), Positives = 182/267 (67%), Gaps = 8/267 (2%)
Query: 1 MKLNKIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGV-PVFSRKEDLI 59
M IK+++AG RG+MG AV++ +F+L+ + + + V PV S
Sbjct: 1 MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYT 60
Query: 60 GFDA-------DIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKE 112
A D+ +DLT PE +T+ ALE+G RPVVGTTGF++ ++ +L + EK
Sbjct: 61 DIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKG 120
Query: 113 LGGLIAPNFALGAVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERL 172
+G +IAPNFALGA+L+M+FSK A YF DVEIIELHHD K DAPSGTA+KTAE++SE R
Sbjct: 121 IGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKLDAPSGTALKTAEMISEVRK 180
Query: 173 AHHQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSS 232
QG DEKE L GARGA+ G+R+HSVRLPGL+AHQEV+FG G+ L +RHDSY+R+S
Sbjct: 181 EKQQGHPDEKEILPGARGAEQNGIRLHSVRLPGLIAHQEVMFGMDGQTLQIRHDSYNRAS 240
Query: 233 FMTGIALGIRKVMTVSELKYGLEHFLD 259
FM+G+ L + +VM + +L YGLE+ +D
Sbjct: 241 FMSGVKLSVEQVMKIDQLVYGLENIID 267
gb|AAD50999.1|AF170923_3 (AF170923) dihydrodipicolinate reductase [Mastigocladus laminosus]
Length = 278
Score = 218 bits (550), Expect = 4e-56
Identities = 121/272 (44%), Positives = 167/272 (60%), Gaps = 19/272 (6%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEE-----------VSEAFGVPVFSR 54
I VIV G GKMG ++ ++ A + LM + E ++E VP+ +
Sbjct: 7 IPVIVNGAAGKMGRETIKAVVQAADMTLMGAVDTNPEYQGKDAGEVAGLNEPTEVPITDQ 66
Query: 55 KEDLIGFDAD-------IWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKF 107
E ++ + A + +D T P+A Y N R A+ G RPVVGTTG + ++ L F
Sbjct: 67 LEPILAYVAGERHLQPGVMVDFTHPDAVYDNVRSAIAYGIRPVVGTTGLSSKQIEQLADF 126
Query: 108 SREKELGGLIAPNFALGAVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELM 167
+ + G LI PNF++G VLL Q + A +YF VEIIELHH+ K DAPSGTA++TA+++
Sbjct: 127 AEKASTGCLIIPNFSIGMVLLQQAAIAASQYFDHVEIIELHHNQKADAPSGTAIQTAQML 186
Query: 168 SEERLAHHQGAVDEKEALAGARGADL-EGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHD 226
+E +Q AV E E L GARG+ EG+RIHSVRLPGL+AHQEVIFG+ G+ TLRHD
Sbjct: 187 AEMGKTFNQPAVKETEKLPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQIYTLRHD 246
Query: 227 SYDRSSFMTGIALGIRKVMTVSELKYGLEHFL 258
+ DR+++M G+ L IRKV+ + L YGLE L
Sbjct: 247 TSDRTAYMPGVLLAIRKVLQLKSLVYGLEKIL 278
gi|755603 (L38424) dihydropicolinate reductase [Bacillus subtilis]
Length = 247
Score = 217 bits (546), Expect = 1e-55
Identities = 119/267 (44%), Positives = 164/267 (60%), Gaps = 28/267 (10%)
Query: 1 MKLNKIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGV-PVFSRKEDLI 59
M IK+++AG RG+MG AV++ +F+L+ + + + V PV S
Sbjct: 1 MSNETIKLVIAGPRGRMGQEAVKLAERTPHFDLVGAIDHTYDQQKLSDVMPVESDAFIYT 60
Query: 60 GFDA-------DIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKE 112
A D+ +DLT PE +T+ ALE+G RPVVGTTGF++ ++ +L + EK
Sbjct: 61 DIHACFTETQPDVLIDLTTPEIGKVHTKIALEHGVRPVVGTTGFSEADLKELTSLTEEKG 120
Query: 113 LGGLIAPNFALGAVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERL 172
+G +IAPNFALGA+L+M+FSK A YF DVEIIELHHD K DAPSGTA+KTAE++SE R
Sbjct: 121 IGAIIAPNFALGAILMMKFSKMAANYFEDVEIIELHHDQKLDAPSGTALKTAEMISEVRK 180
Query: 173 AHHQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSS 232
QG DEKE L GARGA+ G+R+H L +RHDSY+R+S
Sbjct: 181 EKQQGHPDEKEILPGARGAEQNGIRLHR--------------------LQIRHDSYNRAS 220
Query: 233 FMTGIALGIRKVMTVSELKYGLEHFLD 259
FM+G+ L + +VM + +L YGLE+ +D
Sbjct: 221 FMSGVKLSVEQVMKIDQLVYGLENIID 247
sp|P72642|DAPB_SYNY3 DIHYDRODIPICOLINATE REDUCTASE >gi|1651716|dbj|BAA16644| (D90899)
dihydrodipicolinate reductase [Synechocystis sp.]
Length = 275
Score = 214 bits (540), Expect = 5e-55
Identities = 116/269 (43%), Positives = 167/269 (61%), Gaps = 16/269 (5%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKK-----EEVSEAFG-----VPVFSRK 55
I V+V G GKMG ++ + A + +L+ + +++ E G VPV +
Sbjct: 7 IPVVVNGAAGKMGREVIKAVAQAPDLQLVGAVDHNPSLQGQDIGEVVGIAPLEVPVLADL 66
Query: 56 EDLIGFDAD-----IWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSRE 110
+ ++ + +D T P Y N R A+ G RPVVGTTG ++ ++ DL F+ +
Sbjct: 67 QSVLVLATQEKIQGVMVDFTHPSGVYDNVRSAIAYGVRPVVGTTGLSEQQIQDLGDFAEK 126
Query: 111 KELGGLIAPNFALGAVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEE 170
G LIAPNFA+G +L+ Q + QA +YF VEIIELHH+ K DAPSGTA+KTA++++E
Sbjct: 127 ASTGCLIAPNFAIGVLLMQQAAVQACQYFDHVEIIELHHNQKADAPSGTAIKTAQMLAEM 186
Query: 171 RLAHHQGAVDEKEALAGARGADLEG-MRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYD 229
+ AV+EKE +AGA+G G + IHS+RLPGL+AHQEV+FGS G+ T+RHD+ D
Sbjct: 187 GKTFNPPAVEEKETIAGAKGGLGPGQIPIHSIRLPGLIAHQEVLFGSPGQLYTIRHDTTD 246
Query: 230 RSSFMTGIALGIRKVMTVSELKYGLEHFL 258
R+ +M G+ LGIRKV+ + L YGLE L
Sbjct: 247 RACYMPGVLLGIRKVVELKGLVYGLEKLL 275
emb|CAA20290| (AL031260) putative dihydrodipicolinate reductase [Streptomyces
coelicolor]
Length = 250
Score = 212 bits (533), Expect = 3e-54
Identities = 115/261 (44%), Positives = 168/261 (64%), Gaps = 15/261 (5%)
Query: 3 LNKIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFD 62
++K++V V G +G++G+ AV+ + A++ EL+A LG+ + + E L
Sbjct: 1 MSKLRVAVLGAKGRIGSEAVRAVEAAEDMELVAALGRGDGL------------EALAESG 48
Query: 63 ADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKF-SREKELGGLIAPNF 121
A + ++LT P + N + L +G VVGTTG+TD+ +A L + G LIAPNF
Sbjct: 49 AQVAVELTTPASVMDNLDYCLRHGIHAVVGTTGWTDERLARLNAWLDASPGTGVLIAPNF 108
Query: 122 ALGAVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDE 181
++GAVL M+F++ A YF VE++ELHH K DAPSGTA +TA+L+++ R +
Sbjct: 109 SIGAVLTMKFAQIAAPYFESVEVVELHHPNKVDAPSGTATRTAQLIAQARQKAGSAPAPD 168
Query: 182 KEALA--GARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIAL 239
A A GARGA+++G+ +H+VRL GL+AHQEV+ G++GE LT+RHDS SSFM GI L
Sbjct: 169 ATATALDGARGANVDGVPVHAVRLRGLLAHQEVLLGAEGETLTVRHDSLHHSSFMPGILL 228
Query: 240 GIRKVMTVSELKYGLEHFLDL 260
G R+V+T L +GLEHFLDL
Sbjct: 229 GARRVVTTPGLTFGLEHFLDL 249
emb|CAA15569| (AL008967) dapB [Mycobacterium tuberculosis]
Length = 245
Score = 199 bits (502), Expect = 2e-50
Identities = 111/256 (43%), Positives = 155/256 (60%), Gaps = 13/256 (5%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
++V V G +GK+GAT V+ + A + L A L + +S L + ++
Sbjct: 1 MRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSL------------LTDGNTEV 48
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREK-ELGGLIAPNFALG 124
+D T P+ N F ++NG VVGTTGFT + + + K LIAPNFA+G
Sbjct: 49 VIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIG 108
Query: 125 AVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEA 184
AVL M F+KQA ++F E+IELHH K DAPSGTA +TA+L++E R +
Sbjct: 109 AVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTS 168
Query: 185 LAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIRKV 244
L GARGAD++G+ +H+VRL GLVAHQEV+FG++GE LT+RHDS DR+SF+ G+ L +R++
Sbjct: 169 LPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRI 228
Query: 245 MTVSELKYGLEHFLDL 260
L GLE LDL
Sbjct: 229 AERPGLTVGLEPLLDL 244
sp|P72024|DAPB_MYCTU DIHYDRODIPICOLINATE REDUCTASE >gi|1513224 (U66101)
dihydrodipicolinate reductase [Mycobacterium
tuberculosis]
Length = 245
Score = 198 bits (498), Expect = 4e-50
Identities = 110/256 (42%), Positives = 154/256 (59%), Gaps = 13/256 (5%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
++V V G +GK+G T V+ + A + L A L + +S L + ++
Sbjct: 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSL------------LTDGNTEV 48
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREK-ELGGLIAPNFALG 124
+D T P+ N F ++NG VVGTTGFT + + + K LIAPNFA+G
Sbjct: 49 VIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIG 108
Query: 125 AVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEA 184
AVL M F+KQA ++F E+IELHH K DAPSGTA +TA+L++E R +
Sbjct: 109 AVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTS 168
Query: 185 LAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIRKV 244
L GARGAD++G+ +H+VRL GLVAHQEV+FG++GE LT+RHDS DR+SF+ G+ L +R++
Sbjct: 169 LPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRI 228
Query: 245 MTVSELKYGLEHFLDL 260
L GLE LDL
Sbjct: 229 AERPGLTVGLEPLLDL 244
sp|P42462|DAPB_CORGL DIHYDRODIPICOLINATE REDUCTASE >gi|288722|emb|CAA47968| (X67737)
dihydrodipicolinate reductase [Corynebacterium
glutamicum]
Length = 248
Score = 198 bits (498), Expect = 4e-50
Identities = 107/258 (41%), Positives = 160/258 (61%), Gaps = 15/258 (5%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
IKV V G +G++G T V + + + EL+A +G +++S L+ A++
Sbjct: 3 IKVGVLGAKGRVGQTIVAAVNESDDLELVAEIGVDDDLSL------------LVDNGAEV 50
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKE-LGGLIAPNFALG 124
+D T P A N F + NG VVGTTGF D + + + K+ +G LIAPNFA+
Sbjct: 51 VVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRDWLEGKDNVGVLIAPNFAIS 110
Query: 125 AVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDE--K 182
AVL M FSKQA ++F E+IELHH K DAPSGTA+ TA+ ++ R A + +
Sbjct: 111 AVLTMVFSKQAARFFESAEVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMDAQPDATE 170
Query: 183 EALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIR 242
+AL G+RGA ++G+ +H+VR+ G+VAH++VIFG++G+ LT++ DSYDR+SF G+ +G+R
Sbjct: 171 QALEGSRGASVDGIPVHAVRMSGMVAHEQVIFGTQGQTLTIKQDSYDRNSFAPGVLVGVR 230
Query: 243 KVMTVSELKYGLEHFLDL 260
+ L GLEH+L L
Sbjct: 231 NIAQHPGLVVGLEHYLGL 248
sp|P40110|DAPB_BRELA DIHYDRODIPICOLINATE REDUCTASE >gi|423822|pir||A40626
dihydrodipicolinate reductase (EC 1.3.1.26) -
Corynebacterium glutamicum >gi|311768|emb|CAA79712|
(Z21502) dihydrodipicolinate reductase [Corynebacterium
glutamicum]
Length = 248
Score = 198 bits (498), Expect = 4e-50
Identities = 107/258 (41%), Positives = 160/258 (61%), Gaps = 15/258 (5%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
IKV V G +G++G T V + + + EL+A +G +++S L+ A++
Sbjct: 3 IKVGVLGAKGRVGQTIVAAVNESDDLELVAEIGVDDDLSL------------LVDNGAEV 50
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKE-LGGLIAPNFALG 124
+D T P A N F + NG VVGTTGF D + + + K+ +G LIAPNFA+
Sbjct: 51 VVDFTTPNAVMGNLEFCINNGISAVVGTTGFDDARLEQVRAWLEGKDNVGVLIAPNFAIS 110
Query: 125 AVLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDE--K 182
AVL M FSKQA ++F E+IELHH K DAPSGTA+ TA+ ++ R A + +
Sbjct: 111 AVLTMVFSKQAARFFESAEVIELHHPNKLDAPSGTAIHTAQGIAAARKEAGMDAQPDATE 170
Query: 183 EALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIR 242
+AL G+RGA ++G+ +H+VR+ G+VAH++VIFG++G+ LT++ DSYDR+SF G+ +G+R
Sbjct: 171 QALEGSRGASVDGIPVHAVRMSGMVAHEQVIFGTQGQTLTIKQDSYDRNSFAPGVLVGVR 230
Query: 243 KVMTVSELKYGLEHFLDL 260
+ L GLEH+L L
Sbjct: 231 NIAQHPGLVVGLEHYLGL 248
sp|P24703|YSOD_COXBU HYPOTHETICAL 18.4 KD PROTEIN IN SODB 3'REGION
>gi|282117|pir||B44791 dipicolinate reductase homolog -
Coxiella burnetii >gi|145003 (M74242) ORF [Coxiella
burnetii]
Length = 170
Score = 147 bits (367), Expect = 1e-34
Identities = 71/176 (40%), Positives = 113/176 (63%), Gaps = 11/176 (6%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
I VI+ G GKMG + I + EL++ G+++++++ AD+
Sbjct: 3 INVIINGINGKMGRVVKENITAQSDLELVSGTGRQDDLAKTIQTT-----------HADV 51
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGA 125
+D + P++ + N +++G RPV+GTTG T +++A L K R K+LG ++APNF++GA
Sbjct: 52 VIDFSTPQSVFHNAEIIIQSGARPVIGTTGLTLEQIALLDKQCRNKKLGAIVAPNFSVGA 111
Query: 126 VLLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDE 181
VL+M+++K+A YFPDVEIIE+HH K DAPSGTA+KTA+++ E R HQ A ++
Sbjct: 112 VLMMKYAKEAAHYFPDVEIIEMHHSQKIDAPSGTAIKTAQMIGEMRSHPHQDAAEK 167
sp|P46829|DAPB_MYCBO DIHYDRODIPICOLINATE REDUCTASE >gi|1076014|pir||A55517 dapB protein
- Mycobacterium bovis >gi|457295 (L24366) dapB
[Mycobacterium bovis]
Length = 271
Score = 134 bits (335), Expect = 6e-31
Identities = 82/255 (32%), Positives = 135/255 (52%), Gaps = 17/255 (6%)
Query: 7 KVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADIW 66
+V + G GK+GA +I +FE +A+LG E SR+ D AD+
Sbjct: 4 RVALVGGTGKLGAIIAGVIDELDDFETVAVLGSDER----------SREIDA----ADLV 49
Query: 67 LDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGAV 126
+D + P + R A+E G +VGT+G++ + +A + G + PNF+LG+V
Sbjct: 50 VDASTPGVSIDVVRAAIERGKNVLVGTSGWSTERIALVRPLVEAAGTGAVFIPNFSLGSV 109
Query: 127 LLMQFSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEALA 186
+ + A FP +EI+E H + K D+PSGTAV+TAEL+++ R+ G V+
Sbjct: 110 VATALAAAAAPLFPSIEIVETHRETKVDSPSGTAVRTAELIADARVG--VGPVESPHVDQ 167
Query: 187 GARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRS-SFMTGIALGIRKVM 245
ARG + + IHS+R PG++A++E I GE LT+ HD+ + + ++ GI + +
Sbjct: 168 RARGQQVASVPIHSLRRPGVIANEETILSGPGESLTIVHDTIEPARAYAPGIRIALAARA 227
Query: 246 TVSELKYGLEHFLDL 260
+ GL+ +DL
Sbjct: 228 DARGVTIGLDALIDL 242
sp|Q57865|DAPB_METJA DIHYDRODIPICOLINATE REDUCTASE >gi|2127846|pir||F64352
dihydrodipicolinate reductase (EC 1.3.1.26) -
Methanococcus jannaschii >gi|1591125 (U67494)
dihydrodipicolinate reductase (dapB) [Methanococcus
jannaschii]
Length = 290
Score = 122 bits (303), Expect = 3e-27
Identities = 86/276 (31%), Positives = 141/276 (50%), Gaps = 22/276 (7%)
Query: 1 MKLNKIKVIVAGFRGKMGATAVQMILNAQNFELMALLG------KKEEVSEAFG-----V 49
M + IKV V G G+MG+ ++ I ++ +++ K E+V E G V
Sbjct: 13 MVMIMIKVAVTGALGRMGSNIIKTITQQEDMKVVCAFEVPNHPKKGEDVGELIGIGKIGV 72
Query: 50 PVFSRKE---DLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIK 106
P+ + E L D+ +D T A +N + A +NG V+GTTGFT+++ A++ K
Sbjct: 73 PLSTADELDKVLKETKPDVLVDFTIAHACVENVKIAAKNGVNLVIGTTGFTEEQKAEIEK 132
Query: 107 FSREKELGGLIAPNFALGAVLLMQFSKQAVKYFPD--VEIIELHHDGKKDAPSGTAVKTA 164
+E + +I+ NFA+G + + + K D +EIIE+HH KKDAPSGTA++ A
Sbjct: 133 AIKENNVAAVISQNFAIGVNIFFKTLEFLAKKLGDYDIEIIEMHHRYKKDAPSGTALRAA 192
Query: 165 ELMSEERLAHHQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLR 224
E++ R V + + G R + G IH++R +V VIF GE + L
Sbjct: 193 EIIKANR-GIESVFVYGRYGMTGERKKEEIG--IHALRGGDVVGDHTVIFAGDGERIELT 249
Query: 225 HDSYDRSSFMTGIALGIRKVMTVSELKYGLEHFLDL 260
H + R +F+ G+ L IR +++ K G+ + D+
Sbjct: 250 HRASSRQAFVNGVILAIR---YIADKKEGIYNTFDV 282
gi|2649691 (AE001041) dihydrodipicolinate reductase (dapB) [Archaeoglobus
fulgidus]
Length = 257
Score = 114 bits (282), Expect = 9e-25
Identities = 82/266 (30%), Positives = 135/266 (49%), Gaps = 21/266 (7%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEA--------FGVPVFSRKED 57
++V V+G G+MG V+ + A+ +++ E +A GVP+ ++D
Sbjct: 1 MRVAVSGAAGRMGRLVVKNAV-AEGLKVVQAFDINEVGKDAGELAGVGKIGVPI---EDD 56
Query: 58 LIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLI 117
+ DAD+ +D T EAA KN A E G R V+GTTGFTD++ L + + + + ++
Sbjct: 57 ISKLDADVLIDFTTAEAAMKNAEVAAEKGVRVVMGTTGFTDEDRKRLAELAEKVPM--IV 114
Query: 118 APNFALGAVLLMQFSKQAVK--YFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHH 175
+PNF+LG + + + A K Y D EI+ELHH K+D+PSGTA+K AE++ ++
Sbjct: 115 SPNFSLGVNIFWKIVEYAAKMLYEWDAEIVELHHRHKRDSPSGTALKLAEII--RKVKEE 172
Query: 176 QG-AVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFM 234
+G D K G + E + + +R +V V F GE + L H + R F
Sbjct: 173 KGIEADLKTCREGISPRESE-IGVFGIRGGDVVGEHTVFFFGSGERIELTHRAMSRECFA 231
Query: 235 TGIALGIRKVMTVSELK-YGLEHFLD 259
G + + V + Y ++ FL+
Sbjct: 232 IGAVRAAKWIAKVDKPGFYTMDDFLE 257
gi|2621890 (AE000858) dihydrodipicolinate reductase [Methanobacterium
thermoautotrophicum]
Length = 273
Score = 113 bits (280), Expect = 2e-24
Identities = 80/254 (31%), Positives = 127/254 (49%), Gaps = 19/254 (7%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLG------KKEEVSE-----AFGVPVFSR 54
I+V V G G+MG+ ++ +L ++ EL+A + + ++ E + GV V
Sbjct: 2 IRVAVTGACGRMGSGIIRRVLEEEDMELVAAIEAPGTPLRGRDIGEFTGRGSVGVEVTDA 61
Query: 55 K---EDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREK 111
+ L + D+ +D T AA + + + E G VVGTTGF+++E+ +
Sbjct: 62 SNLADTLAETEPDVLVDFTVASAAVETIKTSTEAGVNLVVGTTGFSEEEMQTVRDCIERS 121
Query: 112 ELGGLIAPNFALGAVLLMQFSKQAVKYFPD--VEIIELHHDGKKDAPSGTAVKTAELMSE 169
+ +IAPN A+G + + + D VEIIE HH KKDAPSGTAV+ E++SE
Sbjct: 122 GVRAVIAPNMAVGVNVFFKVLRDLAPILSDYDVEIIEAHHRHKKDAPSGTAVRALEVISE 181
Query: 170 ER-LAHHQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSY 228
+ AV + L G R D G +H+VR +V V+F GE L + H ++
Sbjct: 182 ATGRRASEVAVHGRSGLTGERSRDEIG--VHAVRGGDIVGDHIVLFAGDGERLEIVHRAH 239
Query: 229 DRSSFMTGIALGIR 242
R +F+ G+ IR
Sbjct: 240 SRDAFIGGVIRAIR 253
sp|O67061|DAPB_AQUAE DIHYDRODIPICOLINATE REDUCTASE >gi|2983426 (AE000713)
dihydrodipicolinate reductase [Aquifex aeolicus]
Length = 265
Score = 99.8 bits (245), Expect = 2e-20
Identities = 74/250 (29%), Positives = 126/250 (49%), Gaps = 30/250 (12%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMAL-----------LGKKEEVSEAFGVPVFSR 54
++V+V G G+MG +++ L ++ E++ LG+ E G P+ SR
Sbjct: 3 VRVVVCGALGRMGRRIIELALQDKDVEVVGGVEHPDCVPSIDLGEALGKEELKGKPLTSR 62
Query: 55 KEDLIGFDADIWLDLTA-PEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKEL 113
E+L+ + D+ ++ + P AA + V+GTTGFT E+ + +FS+ +
Sbjct: 63 LEELLPY-TDVVIEFSGNPTAAVGHAELTTLEKKAIVIGTTGFTKQEIEQIKEFSKNAPV 121
Query: 114 GGLIAPNFALGAVLLMQFSKQAVKYFPD----VEIIELHHDGKKDAPSGTAVKTAELMSE 169
L++PN +LG LL + ++ A K D EI+E+HH KKDAPSGTA+K AE++SE
Sbjct: 122 --LLSPNMSLGVNLLFKLAEIAAKVLKDKNFDAEIMEIHHRFKKDAPSGTAMKLAEILSE 179
Query: 170 ERLAHHQGAVDEKEALAGARG---ADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHD 226
+++K + G +G + + + ++R +V V F GE + L H
Sbjct: 180 --------TLEKKNLVFGRKGEAPRKEDEIGVMALRGGDVVGDHTVYFLGFGERIELTHR 231
Query: 227 SYDRSSFMTG 236
+ R +F G
Sbjct: 232 ATSRDTFAKG 241
sp|P04036|DAPB_ECOLI DIHYDRODIPICOLINATE REDUCTASE >gi|66053|pir||RDECPD
dihydrodipicolinate reductase (EC 1.3.1.26) -
Escherichia coli >gi|1127156|pdb|1DIH| Mol_id: 1;
Molecule: Dihydrodipicolinate Reductase; Chain: Null;
Ec: 1.3.1.26; Engineered: Yes >gi|1942418|pdb|1DRU|
Escherichia Coli DhprNADH COMPLEX >gi|1942419|pdb|1DRV|
Escherichia Coli DhprACNADH COMPLEX
>gi|1942420|pdb|1DRW| Escherichia Coli DhprNHDH COMPLEX
>gi|3891980|pdb|1ARZ|A Chain A, Escherichia Coli
Dihydrodipicolinate Reductase In Complex With Nadh And
2,6 Pyridine Dicarboxylate >gi|3891981|pdb|1ARZ|B Chain
B, Escherichia Coli Dihydrodipicolinate Reductase In
Complex With Nadh And 2,6 Pyridine Dicarboxylate
>gi|3891982|pdb|1ARZ|C Chain C, Escherichia Coli
Dihydrodipicolinate Reductase In Complex With Nadh And
2,6 Pyridine Dicarboxylate >gi|3891983|pdb|1ARZ|D Chain
D, Escherichia Coli Dihydrodipicolinate Reductase In
Complex With Nadh And 2,6 Pyridine Dicarboxylate
>gi|145710 (M10611) dihydropicolinate reductase
[Escherichia coli] >gi|216458|dbj|BAA01309| (D10483)
dehydrodipicolinate reductase [Escherichia coli]
>gi|1786214 (AE000113) dihydrodipicolinate reductase
[Escherichia coli]
Length = 273
Score = 92.8 bits (227), Expect = 3e-18
Identities = 82/275 (29%), Positives = 126/275 (45%), Gaps = 33/275 (12%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKE---------EVSEA--FGVPVFSR 54
I+V +AG G+MG +Q L + +L A L ++ E++ A GV V S
Sbjct: 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSS 65
Query: 55 KEDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELG 114
D + D D+++D T PE + F ++G V+GTTGF DE ++
Sbjct: 66 L-DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGF--DEAGKQAIRDAAADIA 122
Query: 115 GLIAPNFALGAVLLMQFSKQAVKY---FPDVEIIELHHDGKKDAPSGTAVKTAELMSEER 171
+ A NF++G ++++ ++A K + D+EIIE HH K DAPSGTA L E
Sbjct: 123 IVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTA-----LAMGEA 177
Query: 172 LAH------HQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRH 225
+AH AV +E G R G +VR +V +F GE L + H
Sbjct: 178 IAHALDKDLKDCAVYSREGHTGERVPGTIGFA--TVRAGDIVGEHTAMFADIGERLEITH 235
Query: 226 DSYDRSSFMTGIALGIRKVMTVSELKYGLEHFLDL 260
+ R +F G +R + +S + GL D+
Sbjct: 236 KASSRMTFANG---AVRSALWLSGKESGLFDMRDV 267
sp|P45153|DAPB_HAEIN DIHYDRODIPICOLINATE REDUCTASE >gi|1073984|pir||G64115
dehydrodipicolinate reductase (dapB) homolog -
Haemophilus influenzae (strain Rd KW20) >gi|1574767
(U32810) dihydrodipicolinate reductase (dapB)
[Haemophilus influenzae Rd]
Length = 270
Score = 91.7 bits (224), Expect = 6e-18
Identities = 73/252 (28%), Positives = 121/252 (47%), Gaps = 32/252 (12%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKK------EEVSEAFGV---------P 50
+K+ +AG G+MG +Q + +A+ EL A +K + E G+
Sbjct: 3 LKIAIAGAGGRMGCQLIQAVHSAEGVELGAAFERKGSSLVGTDAGELAGIGHLGVAVSDD 62
Query: 51 VFSRKEDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSRE 110
+ S+K+ D+ +D T PE ++ F + N + V+GTTGF D+ IK + +
Sbjct: 63 LESQKDKF-----DLLIDFTRPEGTLEHIAFCVANNKKMVIGTTGF-DENGKVAIKAASD 116
Query: 111 KELGGLIAPNFALGAVLLMQFSKQAVKY---FPDVEIIELHHDGKKDAPSGTAVKTAELM 167
K + + A NF++G L+ + ++A K + D+E+IE HH K DAPSGTA+ E +
Sbjct: 117 K-IAIVFASNFSVGVNLVFKLLEKAAKVMGDYCDIEVIEAHHRHKVDAPSGTALSMGEHI 175
Query: 168 SE---ERLAHHQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLR 224
++ L H V +E + G R D G ++R +V V F GE + +
Sbjct: 176 AKTLGRDLKTH--GVFCREGITGERKRDEIG--FSTIRASDVVGEHSVWFADIGERVEIS 231
Query: 225 HDSYDRSSFMTG 236
H + R +F G
Sbjct: 232 HKASSRMTFANG 243
sp|Q52419|DAPB_PSESZ DIHYDRODIPICOLINATE REDUCTASE >gi|1185002 (U47017)
dihydrodipicolinate reductase [Pseudomonas syringae pv.
tabaci]
Length = 267
Score = 91.3 bits (223), Expect = 8e-18
Identities = 72/269 (26%), Positives = 123/269 (44%), Gaps = 23/269 (8%)
Query: 7 KVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEA-----------FGVPVFSRK 55
++ V G G+MG T ++ + A L A + + + GVP+ S
Sbjct: 3 RIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPL-SGD 61
Query: 56 EDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGG 115
+ + D+ +D T P KN F + G ++GTTGF+ +E L++ K++
Sbjct: 62 LAKVADEFDVLIDFTHPSVTLKNLAFCRKAGKAMIIGTTGFSAEEKQRLVEAG--KDIPI 119
Query: 116 LIAPNFALGAVLLMQFSKQAVKYFPD---VEIIELHHDGKKDAPSGTAVKTAELMSEERL 172
+ A NF++G L ++ A + D +EI E HH K DAPSGTA++ E+++
Sbjct: 120 VFAANFSIGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKVDAPSGTALRMGEVVASALG 179
Query: 173 AH-HQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRS 231
+ AV +E GAR D + + ++R +V V+F + GE + + H + R
Sbjct: 180 RDLEKVAVYGREGQTGAR--DRQTIGFATIRAGDVVGDHTVLFAADGERVEITHKASSRM 237
Query: 232 SFMTGIALGIRKVMTVSELKYGLEHFLDL 260
+F G +R M + GL D+
Sbjct: 238 TFAKG---AVRAAMWLDGKAPGLYDMQDV 263
sp|Q9ZE14|DAPB_RICPR DIHYDRODIPICOLINATE REDUCTASE >gi|3860715|emb|CAA14616| (AJ235270)
DIHYDRODIPICOLINATE REDUCTASE (dapB) [Rickettsia
prowazekii]
Length = 239
Score = 88.5 bits (216), Expect = 5e-17
Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
I + ++G GKMG T +++I ++ ++ +++ D + ++D+
Sbjct: 2 INIGLSGSTGKMGKTIIEIIDQFKDCQISGKFNSTNNLNDL----------DNLCKNSDV 51
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGA 125
+D + PE + K +AL++ + V+GTTG D L K ++ L L + N ++GA
Sbjct: 52 IIDFSTPEVSEKLINYALKHNTKLVIGTTGLKDQHFKLLEKAAQT--LPVLYSANMSIGA 109
Query: 126 VLLMQFSKQAVKYFP--DVEIIELHHDGKKDAPSGTAVKTAELMSEER----LAHHQGAV 179
LL +K+ K DVEI+E+HH KKD+PSGTA+ A ++ + + + +
Sbjct: 110 NLLNYLAKKITKILDEYDVEILEMHHRNKKDSPSGTALMLASTIASAKGFNIIFNRDNRI 169
Query: 180 DEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTG 236
K+ + + L G +H + E+ F E +TL+H++ +++SF G
Sbjct: 170 KSKKEIG---ISSLRGGNVHGI--------HEIFFLGNDEIITLKHEALNKNSFAIG 215
emb|CAB41012.1| (AJ238308) dihydrodipicolinate reductase [Bordetella pertussis]
Length = 269
Score = 83.9 bits (204), Expect = 1e-15
Identities = 72/266 (27%), Positives = 116/266 (43%), Gaps = 16/266 (6%)
Query: 7 KVIVAGFRGKMGATAVQMILNAQNFELMALLGKK------EEVSEAFGVPVFSRKEDLIG 60
++ +AG G+MG ++ +L+ + EL L + ++ A G P D +
Sbjct: 8 RIAIAGASGRMGQMLIEAVLDTEGVELAVALDRAGSPSIGQDAGAALGRPCGVTITDQLD 67
Query: 61 F--DADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIA 118
AD +D T PE ++ + L + + V+GTTGF A+ IK + +K + + A
Sbjct: 68 ALAQADCLIDFTRPEGTLQHLQACLRHDVKMVIGTTGFDSSGRAE-IKVAAQK-IAIVFA 125
Query: 119 PNFALGAVLLMQFSKQAVKYFP---DVEIIELHHDGKKDAPSGTAVKTAE-LMSEERLAH 174
PN ++G ++ A + DVEI E HH K DAPSGTA+ E + S +A
Sbjct: 126 PNMSVGVNATLKLLDMAARILNSGYDVEIFEAHHRNKVDAPSGTALIMGETVASAWDVAL 185
Query: 175 HQGAVDEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFM 234
A + G R G + VR +V V F GE + + H S R+++
Sbjct: 186 PDVATWTRHGDTGVRKPGTIGFSV--VRGGDIVGDHTVFFCGTGERIEISHRSSSRATYA 243
Query: 235 TGIALGIRKVMTVSELKYGLEHFLDL 260
G R + Y ++ L L
Sbjct: 244 QGAVRAARFLARQDNGLYDMQAVLGL 269
emb|CAB72680.1| (AL139074) dihydrodipicolinate reductase [Campylobacter jejuni]
Length = 242
Score = 82.7 bits (201), Expect = 3e-15
Identities = 72/259 (27%), Positives = 125/259 (47%), Gaps = 22/259 (8%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDADI 65
IK+ + G +G+MG + + + + L K + E F K D+I
Sbjct: 2 IKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELF------EKSDVI------ 49
Query: 66 WLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGA 125
+D ++P ++ +A V+GTTG D+++ L++ S + + A N +LG
Sbjct: 50 -IDFSSPSGTHELLNYARTMPKPLVIGTTGL-DEKILHLMQ-SASEVMPIFYATNMSLGV 106
Query: 126 VLLMQFSKQAVKYFP--DVEIIELHHDGKKDAPSGTAVKTAELMSEER-LAHHQGAVDEK 182
+L + +A + D+EI+E+HH KKDAPSGTA+ A+ +++ R L + V +
Sbjct: 107 AVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEKVRVSGR 166
Query: 183 EALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIR 242
+ + G R D + + S+R +V V F GE L L H + R++F G A+ I
Sbjct: 167 DGIIGERSKD--EIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG-AIKIA 223
Query: 243 KVMTVSELK-YGLEHFLDL 260
++ E K Y + FL +
Sbjct: 224 IWLSKQEAKMYSINDFLGI 242
gb|AAC67960.1| (AE001309) Dihydrodipicolinate Reductase [Chlamydia trachomatis]
Length = 253
Score = 79.2 bits (192), Expect = 3e-14
Identities = 65/244 (26%), Positives = 108/244 (43%), Gaps = 27/244 (11%)
Query: 5 KIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDAD 64
K + + G G+MG Q +L + L ++ + S E+++ + D
Sbjct: 9 KKSIGLVGDTGRMGVLLTQALLCRPHCFLGKGFSRRSQTS----------LEEVVT-END 57
Query: 65 IWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALG 124
I +D ++PE F L+ ++GTTGFT+D + + + ++ N +LG
Sbjct: 58 ILVDFSSPEVTSLLLDFLLKTPRPVIIGTTGFTNDSGVKTKLSALSEYVPVVVCANTSLG 117
Query: 125 AVLLMQFSKQAVKYFP---DVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDE 181
A + + + A K F DV I+E HH K DA SGTA+ AE + R A + +E
Sbjct: 118 AYVQKRLAAFAAKLFSTSYDVRILETHHRAKADAISGTAISLAEAI---RSAKAESYEEE 174
Query: 182 KEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGI 241
E + +H RL + EV F + E +RH+ + R F G+ L +
Sbjct: 175 PEPF----------IEMHGSRLGNVCGEHEVSFVGEDERFVIRHEVFSRRVFSGGVLLIL 224
Query: 242 RKVM 245
K+M
Sbjct: 225 EKIM 228
sp|P45415|DAPB_KLEPN DIHYDRODIPICOLINATE REDUCTASE >gi|2126130|pir||S60778
dihydrodipicolinate reductase (EC 1.3.1.26) - Klebsiella
pneumoniae (fragment)
Length = 185
Score = 78.8 bits (191), Expect = 4e-14
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 5 KIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKE---------EVSEA--FGVPVFS 53
+I+V +AG G+MG +Q L + L A L ++ E++ A GV V S
Sbjct: 5 QIRVAIAGAGGRMGRQLIQAALQMEGVALGAALEREGSSLVGSDAGELAGAGKAGVAVQS 64
Query: 54 RKEDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKEL 113
+ D D+ +D T PE + F E+G V+GTTGF DD I+ + + ++
Sbjct: 65 SLA-AVKDDFDVLIDFTRPEGTLNHLAFCREHGKGMVIGTTGF-DDAGKQAIRDAAQ-DI 121
Query: 114 GGLIAPNFALGAVLLMQFSKQAVKY---FPDVEIIELHHDGKKDAPSGTAVKTAELMS 168
+ A NF++G +L++ ++A K + D+EIIE HH K DAPSGTA+ E ++
Sbjct: 122 AIVFAANFSVGVNVLLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIA 179
emb|CAA56219.1| (X79817) dihydrodipicolinate reductase [Klebsiella pneumoniae]
Length = 186
Score = 78.8 bits (191), Expect = 4e-14
Identities = 59/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 5 KIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKE---------EVSEA--FGVPVFS 53
+I+V +AG G+MG +Q L + L A L ++ E++ A GV V S
Sbjct: 5 QIRVAIAGAGGRMGRQLIQAALQMEGVALGAALEREGSSLVGSDAGELAGAGKAGVAVQS 64
Query: 54 RKEDLIGFDADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKEL 113
+ D D+ +D T PE + F E+G V+GTTGF DD I+ + + ++
Sbjct: 65 SLA-AVKDDFDVLIDFTRPEGTLNHLAFCREHGKGMVIGTTGF-DDAGKQAIRDAAQ-DI 121
Query: 114 GGLIAPNFALGAVLLMQFSKQAVKY---FPDVEIIELHHDGKKDAPSGTAVKTAELMS 168
+ A NF++G +L++ ++A K + D+EIIE HH K DAPSGTA+ E ++
Sbjct: 122 AIVFAANFSVGVNVLLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIA 179
gb|AAD36587.1|AE001799_19 (AE001799) dihydrodipicolinate reductase [Thermotoga maritima]
Length = 216
Score = 76.9 bits (186), Expect = 2e-13
Identities = 66/237 (27%), Positives = 108/237 (44%), Gaps = 53/237 (22%)
Query: 6 IKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVPVFSRKEDLIGFDA-- 63
+K + G+ G+MG +Q + + + EL+ K D+ G +
Sbjct: 1 MKYGIVGYSGRMGQE-IQKVFSEKGHELVL-------------------KVDVNGVEELD 40
Query: 64 --DIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNF 121
D+ +D ++PEA K + V+GTT ++ + L + S KE+ + A NF
Sbjct: 41 SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELS--KEVPVVQAYNF 98
Query: 122 ALGAVLLMQFSKQAVKYFPD--VEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAV 179
++G +L +F + VK D VEI+E HH KKDAPSGTA+
Sbjct: 99 SIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAI------------------ 140
Query: 180 DEKEALAGARGADLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTG 236
L A G + + IHS+R+ G+ V+FG+ GE + ++H + R+ F G
Sbjct: 141 ----LLESALG---KSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIG 190
gi|4155000 (AE001480) DIHYDRODIPICOLINATE REDUCTASE [Helicobacter pylori J99]
Length = 254
Score = 60.1 bits (143), Expect = 2e-08
Identities = 49/151 (32%), Positives = 73/151 (47%), Gaps = 12/151 (7%)
Query: 90 VVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGAVLLMQ--FSKQAVKYFPDVEIIEL 147
V GTTG + + + K + + L L A N ++G ++L Q F D+EI+E
Sbjct: 89 VSGTTGLEKETLEKMQKLALKAPL--LHAHNMSIGIMMLNQLAFLTSLKLKDADIEIVET 146
Query: 148 HHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEALAGARGA--DLEGMRIHSVRLPG 205
HH+ KKDAPSGTA+ E ++ R DEK AL R E + I ++R
Sbjct: 147 HHNLKKDAPSGTALSLYETCTKAR------GYDEKNALITHREGLRSKESIGIATLRGGD 200
Query: 206 LVAHQEVIFGSKGEGLTLRHDSYDRSSFMTG 236
+ + F +GE + L H + +RS F G
Sbjct: 201 VAGKHTIGFYLEGEYIELSHTATNRSIFAKG 231
gi|1763301 (U75328) dihydrodipicolinate reductase [Helicobacter pylori]
Length = 254
Score = 58.6 bits (139), Expect = 6e-08
Identities = 48/151 (31%), Positives = 73/151 (47%), Gaps = 12/151 (7%)
Query: 90 VVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGAVLLMQFSKQAVKYFPD--VEIIEL 147
V GTTG + + + + + + L L N +LG ++L Q + A D +EI+E
Sbjct: 89 VSGTTGLEKETLEKMKQLALKAPL--LHVHNMSLGIMMLNQLAFLASLKLKDADIEIVET 146
Query: 148 HHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEALAGARGA--DLEGMRIHSVRLPG 205
HH+ KKDAPSGTA+ E ++ R DEK AL R E + I ++R
Sbjct: 147 HHNLKKDAPSGTALSLYETCAKAR------GYDEKNALTTHREGLRSKESIGIAALRGGD 200
Query: 206 LVAHQEVIFGSKGEGLTLRHDSYDRSSFMTG 236
+ + F +GE + L H + +RS F G
Sbjct: 201 VAGKHTIGFYLEGEYIELSHTATNRSIFAKG 231
gb|AAD19184| (AE001685) Dihydrodipicolinate Reductase [Chlamydia pneumoniae]
Length = 264
Score = 58.2 bits (138), Expect = 7e-08
Identities = 60/211 (28%), Positives = 93/211 (43%), Gaps = 25/211 (11%)
Query: 41 EEVSEAFGVPVFSRKEDLIGFDA----DIWLDLTAPEAAYKNTRFALENGFRPVVGTTGF 96
E+ SE P FSR L F D+ +D + P + L + ++GTTGF
Sbjct: 25 EQSSEYTLGPGFSRSSALTLFQVIAHNDVLVDFSHPLLTKEVVAHLLISPKPLIIGTTGF 84
Query: 97 ------TDDEVADLIKFSREKELGGLIAPNFALGAV----LLMQFSKQAVKYFPDVEIIE 146
D + +L + ++ PN +LGA L+M S+ F D+ I E
Sbjct: 85 PGKCKEAHDSLEELTHI-----VPVVVCPNASLGAYIHKRLVMLLSQLCNPQF-DIRIRE 138
Query: 147 LHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEALAGARGADLEGMRIHSVRLPGL 206
HH KKD+ SGTA +L+ + + +E E G R + + + + S R+ +
Sbjct: 139 THHRYKKDSLSGTA---QDLLDTIQQVKQEDWGEEYEV--GQRDSSKKTIEVQSSRVGDI 193
Query: 207 VAHQEVIFGSKGEGLTLRHDSYDRSSFMTGI 237
EV F S GE + +RH + R+ F GI
Sbjct: 194 PGEHEVAFISSGEQILVRHTVFSRNVFGRGI 224
emb|CAA10958.1| (AJ222715) DapB [Sinorhizobium meliloti]
Length = 233
Score = 58.2 bits (138), Expect = 7e-08
Identities = 51/184 (27%), Positives = 85/184 (45%), Gaps = 19/184 (10%)
Query: 3 LNKIKVIVAGFRGKMGATAVQMILNAQNFELMALLGKKEEVSEAFGVP-----------V 51
+++++++V G G+MG T ++ I A+N M + S A G V
Sbjct: 1 MSQMRLVVVGAAGRMGRTLIKAI--AENPGCMLSGAVERPGSAAVGQDAGFVAGMASCGV 58
Query: 52 FSRKEDLIGF-DADIWLDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSRE 110
E F +AD LD T P+A + + A + G VVGTTG + L++ +R
Sbjct: 59 LVTDEPGSAFAEADGVLDFTTPDATAEYSSLAAQVGIVHVVGTTGMEPVHFSKLVRAART 118
Query: 111 KELGGLIAPNFALGAVLLMQFSKQAVKYFP---DVEIIELHHDGKKDAPSGTAVKTAELM 167
+ + + N +LG +L ++ D+E++E+HH K DAPSG A+ E
Sbjct: 119 IPV--VQSGNMSLGVNILAALVQKVAAILDKEWDIEVLEMHHRMKVDAPSGAALLLGEAA 176
Query: 168 SEER 171
+ R
Sbjct: 177 ASGR 180
sp|P94844|DAPB_HELPY DIHYDRODIPICOLINATE REDUCTASE >gi|2313620|gb|AAD07574.1| (AE000565)
dihydrodipicolinate reductase (dapB) [Helicobacter
pylori 26695]
Length = 254
Score = 57.4 bits (136), Expect = 1e-07
Identities = 52/174 (29%), Positives = 79/174 (44%), Gaps = 12/174 (6%)
Query: 67 LDLTAPEAAYKNTRFALENGFRPVVGTTGFTDDEVADLIKFSREKELGGLIAPNFALGAV 126
+D + P+ LE V GTTG + + + + + + L L A N ++G +
Sbjct: 66 IDFSLPKGVDNLLEALLECPKILVSGTTGLEKETLEKMQQLALKAPL--LHAHNMSIGIM 123
Query: 127 LLMQ--FSKQAVKYFPDVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQGAVDEKEA 184
+L Q F D+EIIE HH+ KKD PSGTA+ E ++ R DEK A
Sbjct: 124 MLNQLAFLTSLKLKDADIEIIETHHNLKKDIPSGTALSLYETCAKAR------GYDEKNA 177
Query: 185 LAGARGA--DLEGMRIHSVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTG 236
L R E + I ++R + + F +GE + L H + +RS F G
Sbjct: 178 LITHREGLRSKESIGIAALRGGDVAGKHTIGFYLEGEYIELSHTATNRSIFAKG 231
sp|P38103|DAPB_PSEAE DIHYDRODIPICOLINATE REDUCTASE >gi|1072982|pir||A55580
dihydrodipicolinate reductase (EC 1.3.1.26) -
Pseudomonas aeruginosa (fragment) >gi|451650 (U04992)
dihydrodipicolinate reductase [Pseudomonas aeruginosa]
>gi|1750384 (U81259) dihydrodipicolinate reductase
[Pseudomonas aeruginosa]
Length = 134
Score = 57.0 bits (135), Expect = 2e-07
Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 141 DVEIIELHHDGKKDAPSGTAVKTAELMSEERLAHHQG-AVDEKEALAGARGADLEGMRIH 199
D+EIIE HH K DAPSGTA++ E++++ Q AV +E GAR + G
Sbjct: 15 DIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFA-- 72
Query: 200 SVRLPGLVAHQEVIFGSKGEGLTLRHDSYDRSSFMTGIALGIRKVMTVSELKYGLEHFLD 259
+VR +V V+F ++GE + + H + R +F G +R + + + GL D
Sbjct: 73 TVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARG---AVRAALWLEGKENGLYDMQD 129
Query: 260 L 260
+
Sbjct: 130 V 130
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.319 0.138 0.387
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67872778
Number of Sequences: 457798
Number of extensions: 2828087
Number of successful extensions: 5799
Number of sequences better than 1.0e-02: 31
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5720
Number of HSP's gapped (non-prelim): 33
length of query: 260
length of database: 140,871,481
effective HSP length: 56
effective length of query: 204
effective length of database: 115,234,793
effective search space: 23507897772
effective search space used: 23507897772
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 95 (41.4 bits)