Score E
Sequences producing significant alignments: (bits) Value
sp|P13669|FARR_ECOLI FATTY ACYL RESPONSIVE REGULATOR (P30 P... 52 4e-06
sp|P54590|YHCF_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR... 48 6e-05
dbj|BAA11271| (D78193) yydK [Bacillus subtilis] 48 6e-05
emb|CAB16050| (Z99124) similar to transcriptional regulator... 47 1e-04
gb|AAF10720.1|AE001964_4 (AE001964) conserved hypothetical ... 46 2e-04
sp|Q58752|YD57_METJA PUTATIVE POTASSIUM CHANNEL PROTEIN MJ1... 46 2e-04
gb|AAD30185.1|U86689_2 (U86689) exuR [Erwinia chrysanthemi] 45 4e-04
emb|CAA56754| (X80774) transcriptional repressor of TraB [S... 45 4e-04
gi|2649342 (AE001018) A. fulgidus predicted coding region A... 45 4e-04
emb|CAA74452.1| (Y14080) hypothetical protein [Bacillus sub... 45 4e-04
emb|CAB62259.1| (AJ243257) KORA protein [Streptomyces natal... 45 5e-04
pir||S30403 hypothetical protein L - Streptomyces clavulige... 44 9e-04
emb|CAA18320| (AL022268) hypothetical protein SC4H2.04c [St... 43 0.001
sp|P42608|EXUR_ECOLI EXU REGULON TRANSCRIPTIONAL REGULATOR ... 43 0.001
gb|AAA57898.1| (U18997) ORF_o263 [Escherichia coli] >gi|178... 43 0.001
dbj|BAA83965.1| (AB024564) YHCF [Bacillus halodurans] 43 0.002
emb|CAB45468.1| (AL079348) hypothetical protein [Streptomyc... 43 0.002
emb|CAB40317.1| (AL049573) korSA, regulatory protein [Strep... 43 0.003
gi|2984259 (AE000768) putative protein [Aquifex aeolicus] 43 0.003
gi|2293169 (AF008220) transcription regulator [Bacillus sub... 43 0.003
pir||G48652 regulatory protein korSA - Streptomyces ambofac... 43 0.003
emb|CAB15402| (Z99121) transcriptional regulator (LacI fami... 42 0.003
emb|CAA66999| (X98354) DNA-binding protein [Bacillus subtilis] 42 0.003
emb|CAB08338| (Z95121) hypothetical protein Rv3237c [Mycoba... 42 0.004
emb|CAA19916| (AL031035) transcriptional regulator [Strepto... 41 0.006
sp|P22405|KORA_STRLI KORA PROTEIN >gi|80834|pir||H31844 Kor... 41 0.006
emb|CAA70651| (Y09476) YisV [Bacillus subtilis] >gi|2633423... 41 0.010
emb|CAB08003| (Z94043) hypothetical protein [Bacillus subti... 41 0.010
dbj|BAA19371| (AB001488) SIMILAR TO THE RHIZOPINE CATABOLIS... 41 0.010
sp|P13669|FARR_ECOLI FATTY ACYL RESPONSIVE REGULATOR (P30 PROTEIN)
>gi|78627|pir||S04645 hypothetical protein, 30K -
Escherichia coli >gi|41519|emb|CAA33791| (X15790) P30
protein (AA 1-240) [Escherichia coli] >gi|1786950
(AE000176) transcriptional regulator of succinylCoA
synthetase operon [Escherichia coli]
Length = 240
Score = 51.9 bits (122), Expect = 4e-06
Identities = 27/73 (36%), Positives = 42/73 (56%)
Query: 3 IARQPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVD 62
+ +P Y+QIA +I E+I R ELK G + S L T F VS T R+A+ L + I++
Sbjct: 1 MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILE 60
Query: 63 PVHGSGVNIASKQ 75
+ GSG + ++
Sbjct: 61 SIQGSGTYVKEER 73
sp|P54590|YHCF_BACSU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN PRKA-CSPB INTERGENIC
REGION >gi|1239981|emb|CAA65689.1| (X96983) hypothetical
protein [Bacillus subtilis] >gi|2633229|emb|CAB12734|
(Z99108) similar to transcriptional regulator (GntR
family) [Bacillus subtilis]
Length = 121
Score = 48.0 bits (112), Expect = 6e-05
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 6 QPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVH 65
+P Y QIA QI R+VR EL G K+ + +A V+P T ++ + + LGIV+
Sbjct: 9 KPIYLQIADQIFYRLVRKELLPGDKLPSVREMAIQTKVNPNTIQRTYSEMERLGIVETRR 68
Query: 66 GSGVNIASKQKAQEYLAQYQEVETMQDLRTQIMQSVESQRREL 108
G G IA K + + E L ++++ Q +EL
Sbjct: 69 GQGTFIAEKAEIVD--------ELKDKLTREVLEGFVKQMKEL 103
dbj|BAA11271| (D78193) yydK [Bacillus subtilis]
Length = 238
Score = 48.0 bits (112), Expect = 6e-05
Identities = 29/89 (32%), Positives = 44/89 (48%), Gaps = 1/89 (1%)
Query: 5 RQPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPV 64
R +YQQIA +I I ++L+ G K+ TL F VS T K++ +L G + V
Sbjct: 2 RMLKYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 61
Query: 65 HGSGVNIASKQKAQEYLAQYQEVETMQDL 93
GSG+ K K + Y++ +DL
Sbjct: 62 RGSGI-FVRKHKRKGYISLLSNQGFKKDL 89
emb|CAB16050| (Z99124) similar to transcriptional regulator (GntR family)
[Bacillus subtilis]
Length = 236
Score = 47.3 bits (110), Expect = 1e-04
Identities = 28/86 (32%), Positives = 43/86 (49%), Gaps = 1/86 (1%)
Query: 8 RYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHGS 67
+YQQIA +I I ++L+ G K+ TL F VS T K++ +L G + V GS
Sbjct: 3 KYQQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS 62
Query: 68 GVNIASKQKAQEYLAQYQEVETMQDL 93
G+ K K + Y++ +DL
Sbjct: 63 GI-FVRKHKRKGYISLLSNQGFKKDL 87
gb|AAF10720.1|AE001964_4 (AE001964) conserved hypothetical protein [Deinococcus radiodurans]
Length = 175
Score = 46.5 bits (108), Expect = 2e-04
Identities = 25/69 (36%), Positives = 38/69 (54%)
Query: 126 QKINPLTPIEFELEKDSEKFGLSLGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGD 185
Q I L LE+ S G +LG+ + TG +VVA+++N + I +PGP L GD
Sbjct: 92 QDIEGLAMDWLPLERGSPFAGRALGDSQMRTRTGTSVVAVIRNEQAIPAPGPDYVLEAGD 151
Query: 186 TLYFVGASD 194
T+ VG ++
Sbjct: 152 TVVVVGTAN 160
sp|Q58752|YD57_METJA PUTATIVE POTASSIUM CHANNEL PROTEIN MJ1357 >gi|2129206|pir||D64469
potassium channel homolog - Methanococcus jannaschii
>gi|1592000 (U67575) potassium channel protein, putative
[Methanococcus jannaschii]
Length = 343
Score = 46.1 bits (107), Expect = 2e-04
Identities = 23/67 (34%), Positives = 37/67 (54%)
Query: 135 EFELEKDSEKFGLSLGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGDTLYFVGASD 194
+F +EKDSE SL + N+ TGAT++ I + E ++P P L GD +Y G +
Sbjct: 268 KFVIEKDSELAYKSLKDANIRGKTGATILGIRREKEFCINPYPEFILKPGDVIYAFGTEE 327
Query: 195 TGQIVQN 201
+ ++N
Sbjct: 328 NLKYLEN 334
gb|AAD30185.1|U86689_2 (U86689) exuR [Erwinia chrysanthemi]
Length = 259
Score = 45.3 bits (105), Expect = 4e-04
Identities = 27/105 (25%), Positives = 52/105 (48%)
Query: 9 YQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHGSG 68
YQQ+A ++ +RI VG K+ A ++ VS R+AI +L G V+ GSG
Sbjct: 10 YQQLAAELKQRIENGVYPVGDKLPAERNISEEMNVSRTVVREAIIMLEVEGYVEVRKGSG 69
Query: 69 VNIASKQKAQEYLAQYQEVETMQDLRTQIMQSVESQRRELANFSS 113
+++ S Q+ A + + + +++Q+ + +A F++
Sbjct: 70 IHVISNQQRHLLAANGSDADFLTAGPFELLQARQLIESNIAEFAA 114
emb|CAA56754| (X80774) transcriptional repressor of TraB [Streptomyces
ghanaensis]
Length = 246
Score = 45.3 bits (105), Expect = 4e-04
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 3 IARQPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVD 62
I R P Y Q+ + ++I+ ELK G +I + LAT +++S TA KA+ L G+V+
Sbjct: 5 IDRTPPYLQVVSALRKQIISGELKDGDRIPSVRDLATEWSISQATAMKAVAALRADGLVE 64
Query: 63 PVHGSGVNIASK 74
+ G G + ++
Sbjct: 65 SITGVGTIVRTQ 76
gi|2649342 (AE001018) A. fulgidus predicted coding region AF1244
[Archaeoglobus fulgidus]
Length = 161
Score = 45.3 bits (105), Expect = 4e-04
Identities = 19/46 (41%), Positives = 29/46 (62%)
Query: 146 GLSLGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGDTLYFVG 191
G S+GE+ + TGATV+A+L+ + I+SP P L GD + +G
Sbjct: 102 GKSIGELGIRSKTGATVIAVLKKEKTIISPSPETVLEPGDKVVVIG 147
emb|CAA74452.1| (Y14080) hypothetical protein [Bacillus subtilis]
>gi|2633322|emb|CAB12826| (Z99109) similar to
hypothetical proteins [Bacillus subtilis]
Length = 165
Score = 45.3 bits (105), Expect = 4e-04
Identities = 27/101 (26%), Positives = 56/101 (54%), Gaps = 5/101 (4%)
Query: 96 QIMQSVESQRRELANFSSILDKLVDQTEHFQKI----NPLTPIEFELEKDSEKFGLSLGE 151
+++ ++ E ++IL +V + + + I + L F++EK ++ G +LGE
Sbjct: 47 ELLSNISLDDSEARQIAAILGGMVYKPQALESIEMAFSDLIIEWFKVEKGAKSIGRTLGE 106
Query: 152 MNLWQNTGATVVAILQ-NAELIVSPGPYATLNQGDTLYFVG 191
+++ QN TV+AI++ N E +++PG + + + DTL G
Sbjct: 107 LDVRQNYDVTVIAIIKHNQEKLLNPGADSIIEENDTLVLSG 147
emb|CAB62259.1| (AJ243257) KORA protein [Streptomyces natalensis]
Length = 245
Score = 44.9 bits (104), Expect = 5e-04
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P Y Q+ RI+ EL G + LA + VS TA+KA+ VL G+++ V G
Sbjct: 9 PPYMQVVTHFRTRIMSGELSPGDALPTDRGLAEEWGVSRATAQKALTVLKTEGLIEAVQG 68
Query: 67 SGVNI 71
SG +
Sbjct: 69 SGTRV 73
pir||S30403 hypothetical protein L - Streptomyces clavuligerus
>gi|48762|emb|CAA38043| (X54107) ORFL [Streptomyces
clavuligerus]
Length = 248
Score = 44.1 bits (102), Expect = 9e-04
Identities = 22/65 (33%), Positives = 34/65 (51%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P Y Q+ I ++I EL+ G I + +A + +S TA+K I L G+V+ V G
Sbjct: 9 PPYMQVIAHIRDQIDSGELRAGDLIPSDRNIAQEWGISRATAQKVITALKAQGLVEAVQG 68
Query: 67 SGVNI 71
SG +
Sbjct: 69 SGTRV 73
emb|CAA18320| (AL022268) hypothetical protein SC4H2.04c [Streptomyces coelicolor]
Length = 161
Score = 43.4 bits (100), Expect = 0.001
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 137 ELEKDSEKFGLSLGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGDTLYFVGASD 194
E+ S G LG+ L +TGA++VA+L+ AE I SP P L GDTL +G +
Sbjct: 92 EVAATSRWNGRLLGDTRLRTDTGASIVAVLRRAEAIPSPAPDFRLVGGDTLIVIGTRE 149
sp|P42608|EXUR_ECOLI EXU REGULON TRANSCRIPTIONAL REGULATOR >gi|1160320|dbj|BAA02589|
(D13328) exu regulon repressor [Escherichia coli]
Length = 258
Score = 43.4 bits (100), Expect = 0.001
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 6 QPR--YQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDP 63
+PR YQQ+A + ERI + VG K+ A +A VS R+AI +L G V+
Sbjct: 5 EPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEV 64
Query: 64 VHGSGVNIASKQKAQEYLA 82
GSG+++ S Q + A
Sbjct: 65 RKGSGIHVVSNQPRHQQAA 83
gb|AAA57898.1| (U18997) ORF_o263 [Escherichia coli] >gi|1789480 (AE000391)
negative regulator of exu regulon, exuT, uxaAC, and
uxuB [Escherichia coli]
Length = 263
Score = 43.4 bits (100), Expect = 0.001
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 6 QPR--YQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDP 63
+PR YQQ+A + ERI + VG K+ A +A VS R+AI +L G V+
Sbjct: 10 EPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEV 69
Query: 64 VHGSGVNIASKQKAQEYLA 82
GSG+++ S Q + A
Sbjct: 70 RKGSGIHVVSNQPRHQQAA 88
dbj|BAA83965.1| (AB024564) YHCF [Bacillus halodurans]
Length = 126
Score = 43.0 bits (99), Expect = 0.002
Identities = 25/84 (29%), Positives = 43/84 (50%), Gaps = 1/84 (1%)
Query: 6 QPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVH 65
+P Y Q+A ++ +IVR EL++G+K+ + + V+P T ++ L L IV+
Sbjct: 9 EPIYLQLAERVKRQIVRGELRLGEKLPSVRDMGIEANVNPNTVQRTYRELEGLKIVESKR 68
Query: 66 GSGVNIA-SKQKAQEYLAQYQEVE 88
G G + +Q Q Q +E E
Sbjct: 69 GQGTFVTEDEQVLQAIREQMKETE 92
emb|CAB45468.1| (AL079348) hypothetical protein [Streptomyces coelicolor]
Length = 161
Score = 43.0 bits (99), Expect = 0.002
Identities = 26/67 (38%), Positives = 35/67 (51%), Gaps = 9/67 (13%)
Query: 137 ELEKDSEKFGLS---------LGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGDTL 187
EL +E+ GLS LG+ TG +VVA+L+ AE + SPGP L GDTL
Sbjct: 83 ELGLVAERIGLSAASHWHGRLLGDTRTRTETGVSVVAVLRRAEALPSPGPDFRLADGDTL 142
Query: 188 YFVGASD 194
+G +
Sbjct: 143 IVIGTRE 149
emb|CAB40317.1| (AL049573) korSA, regulatory protein [Streptomyces coelicolor]
Length = 259
Score = 42.6 bits (98), Expect = 0.003
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
PRY QIA +I ++I LK G + + S L + VS T RKA+ + G+V+ HG
Sbjct: 12 PRYVQIADEIVQQIRAGVLKPGDMVPSESELVDRYGVSGGTIRKAMVEVRASGLVETRHG 71
Query: 67 SG 68
G
Sbjct: 72 KG 73
gi|2984259 (AE000768) putative protein [Aquifex aeolicus]
Length = 169
Score = 42.6 bits (98), Expect = 0.003
Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 87 VETMQDLRTQIMQSVESQRRELANFSSILDKLVDQTEHFQKINPLTPIEF-ELEKDSEKF 145
VE ++ + + E + REL + TE + + +E+ ++ ++S
Sbjct: 46 VEEEEEEPSCVFSLTEEEARELGFLLAGTTFQTVSTERMELLMKEIVMEWVKVGENSNFI 105
Query: 146 GLSLGEMNLWQNTGATVVAILQNAELIVSPGPY-ATLNQGDTLYFVGASD 194
G ++ ++ + + TG +++AI+++ E+I SP PY + GDTL VG +
Sbjct: 106 GKTIADLEIRRKTGVSIIAIIRDGEMIPSPDPYKEKIQAGDTLIVVGTRE 155
gi|2293169 (AF008220) transcription regulator [Bacillus subtilis]
>gi|2635530|emb|CAB15024| (Z99119) similar to
transcriptional regulator (GntR family) [Bacillus
subtilis]
Length = 130
Score = 42.6 bits (98), Expect = 0.003
Identities = 23/70 (32%), Positives = 35/70 (49%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P Y+QI Q+ E ++ +K G K+ + LAT +P T KA L GI++ + G
Sbjct: 11 PIYEQIIQQMKELCLKGIMKPGDKLPSVRELATIIIANPNTVSKAYKELEREGIIETLRG 70
Query: 67 SGVNIASKQK 76
G I+ K
Sbjct: 71 RGTYISENAK 80
pir||G48652 regulatory protein korSA - Streptomyces ambofaciens plasmid pSAM2
>gi|298043|emb|CAA79637| (Z19589) KorSA [Streptomyces
ambofaciens] >gi|3043516|emb|CAA06448| (AJ005260) KorSA
[Streptomyces ambofaciens]
Length = 259
Score = 42.6 bits (98), Expect = 0.003
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
PRY QIA +I ++I LK G + + S L + VS T RKA+ + G+V+ HG
Sbjct: 12 PRYVQIADEIVQQIRAGVLKPGDMVPSESELVDRYGVSGGTIRKAMVEVRASGLVETRHG 71
Query: 67 SG 68
G
Sbjct: 72 KG 73
emb|CAB15402| (Z99121) transcriptional regulator (LacI family) [Bacillus
subtilis]
Length = 384
Score = 42.2 bits (97), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P+Y Q+ +I+ I + ++ QKI + L F VS T RKAI L G++ V G
Sbjct: 25 PKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTIRKAIGDLVSQGLLYSVQG 84
Query: 67 SGVNIASK 74
G +AS+
Sbjct: 85 GGTFVASR 92
emb|CAA66999| (X98354) DNA-binding protein [Bacillus subtilis]
Length = 362
Score = 42.2 bits (97), Expect = 0.003
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P+Y Q+ +I+ I + ++ QKI + L F VS T RKAI L G++ V G
Sbjct: 3 PKYAQVKEEISSWINQGKILPDQKIPTENELMQQFGVSRHTIRKAIGDLVSQGLLYSVQG 62
Query: 67 SGVNIASK 74
G +AS+
Sbjct: 63 GGTFVASR 70
emb|CAB08338| (Z95121) hypothetical protein Rv3237c [Mycobacterium tuberculosis]
Length = 160
Score = 41.8 bits (96), Expect = 0.004
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 149 LGEMNLWQNTGATVVAILQNAELIVSPGPYATLNQGDTLYFVGASD 194
LG+ TGA++VAI+++ +++ SPGP L GD L +G D
Sbjct: 103 LGDTRARTRTGASIVAIVRDEDVLASPGPTDVLRAGDVLIVIGTED 148
emb|CAA19916| (AL031035) transcriptional regulator [Streptomyces coelicolor]
Length = 259
Score = 41.4 bits (95), Expect = 0.006
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
PRY Q+A +I ++I LK G + + S + + VS T RKA+ + G+V+ HG
Sbjct: 12 PRYVQVADEIVQQIRAGVLKPGDMVPSESEMVDRYGVSGGTIRKAMVEVRASGLVETRHG 71
Query: 67 SG 68
G
Sbjct: 72 KG 73
sp|P22405|KORA_STRLI KORA PROTEIN >gi|80834|pir||H31844 KorA protein - Streptomyces
lividans plasmid pIJ101 >gi|484012 (M21778) putative
[Plasmid pIJ101]
Length = 241
Score = 41.4 bits (95), Expect = 0.006
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 1 MRIARQPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGI 60
M + R P Y Q+ + +IV ELK G + + LA + +S TA+K L G+
Sbjct: 1 MSLERTPPYLQVVAALKAKIVSGELKHGDTLPSVRDLAAQYEISTATAQKVHRTLKAEGL 60
Query: 61 VDPVHGSGVNIASKQ 75
+ GS +++++
Sbjct: 61 AEAKQGSATTVSTRR 75
emb|CAA70651| (Y09476) YisV [Bacillus subtilis] >gi|2633423|emb|CAB12927|
(Z99109) similar to transcriptional regulator (GntR
family) / aminotransferase (MocR-like) [Bacillus
subtilis]
Length = 237
Score = 40.6 bits (93), Expect = 0.010
Identities = 21/67 (31%), Positives = 37/67 (54%)
Query: 7 PRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHG 66
P ++QI + ++I+ E VG KI ++ TLA F V+ T AI+ L+ G+++ G
Sbjct: 15 PLHRQIEQYMKDKILHGEWAVGTKIPSQRTLADMFQVNRSTVTAAIDELTSQGLLEGRKG 74
Query: 67 SGVNIAS 73
G + +
Sbjct: 75 GGTKVVN 81
emb|CAB08003| (Z94043) hypothetical protein [Bacillus subtilis]
Length = 219
Score = 40.6 bits (93), Expect = 0.010
Identities = 29/109 (26%), Positives = 55/109 (49%), Gaps = 10/109 (9%)
Query: 20 IVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIVDPVHGSG-------VNIA 72
I ELK G K+ + LA +F VS R+A++ L +G+V+ G G +N
Sbjct: 2 IKNGELKPGDKLDSVQALAESFQVSRSAVREALSALKAMGLVEMKQGEGTYLKEFELNQI 61
Query: 73 SKQKAQEYLAQYQEVETMQDLRTQI---MQSVESQRRELANFSSILDKL 118
S+ + L + ++V+ + ++R + + S+ +++R A+ I D L
Sbjct: 62 SQPLSAALLMKKEDVKQLLEVRKLLEIGVASLAAEKRTEADLERIQDAL 110
dbj|BAA19371| (AB001488) SIMILAR TO THE RHIZOPINE CATABOLISM (MOCR) GENE OF
RHIZOBIUM MELILOTI. [Bacillus subtilis]
>gi|2632837|emb|CAB12344| (Z99106) similar to
transcriptional regulator (GntR family) /
aminotransferase (MocR-like) [Bacillus subtilis]
Length = 482
Score = 40.6 bits (93), Expect = 0.010
Identities = 22/67 (32%), Positives = 36/67 (52%)
Query: 2 RIARQPRYQQIALQIAERIVRNELKVGQKIYARSTLATTFAVSPETARKAINVLSDLGIV 61
++ + P+Y+QI I E+I E +G KI ++ TLA F V+ T A+ L G++
Sbjct: 8 KMKKLPKYRQIVHFIKEKIGNGEWPIGSKIPSQRTLAKDFQVNRSTVITALEELMADGLI 67
Query: 62 DPVHGSG 68
+ G G
Sbjct: 68 EGTMGKG 74
Posted date: Mar 2, 2000 12:24 PM
Number of letters in database: 140,871,481
Number of sequences in database: 457,798
Lambda K H
0.316 0.132 0.358
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50391415
Number of Sequences: 457798
Number of extensions: 1877735
Number of successful extensions: 6543
Number of sequences better than 1.0e-02: 29
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6515
Number of HSP's gapped (non-prelim): 30
length of query: 206
length of database: 140,871,481
effective HSP length: 60
effective length of query: 146
effective length of database: 113,403,601
effective search space: 16556925746
effective search space used: 16556925746
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 93 (40.6 bits)